BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039342
(248 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/248 (79%), Positives = 223/248 (89%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGLYKE +AIL +M +SGVARN D+FN VIEAFRQGG+FEEAIKAYVEMEK RCDP+E+T
Sbjct: 268 GGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQT 327
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
LEAVLSVYCFAGLV+ES+EQF EIK+ GILPSVMCYCM+LAVYAK++RWDDA+ LLDEM
Sbjct: 328 LEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMF 387
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
TNR+SNIHQV GQMI+G++DD+SNWQMVEYVF+KL EG LG+RFYN LLEALW LG +
Sbjct: 388 TNRVSNIHQVIGQMIRGDYDDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLLEALWWLGQK 447
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
ERA RVL+EATKRGLFPELFR NKLVWSVDVHRMWEG A TAISVWLN M+EMF+ G+DL
Sbjct: 448 ERATRVLNEATKRGLFPELFRKNKLVWSVDVHRMWEGAACTAISVWLNNMHEMFISGDDL 507
Query: 241 PQLATVVV 248
PQLA+ VV
Sbjct: 508 PQLASAVV 515
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 113/249 (45%), Gaps = 17/249 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + + M+E G+ + +++ ++E F + R E+ + EME P+ +
Sbjct: 24 GLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSY 83
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L + +G + E+ F++++ +G +P+ Y +LL +Y + R+DD L EM
Sbjct: 84 NVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEM-- 141
Query: 122 NRISNI--HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
++SN + T ++ F + ++ V +F + E M Y L+ A GL
Sbjct: 142 -KVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGL 200
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWS-----------VDVHRMWEGGAYTAISVWLN 228
E A ++L ++G+ P + ++ + V + M E G+ + + N
Sbjct: 201 HEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETY-N 259
Query: 229 KMYEMFMMG 237
+ +MF G
Sbjct: 260 SLIQMFAKG 268
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 65/123 (52%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ + IL M+E GV +S ++ VIEA+ Q +EEA+ A+ M +V P T
Sbjct: 198 GGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVET 257
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ ++ GL ES+ ++ SG+ + + ++ + + ++++A EM
Sbjct: 258 YNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEME 317
Query: 121 TNR 123
R
Sbjct: 318 KAR 320
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 88/201 (43%), Gaps = 9/201 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y + + + M S N+ ++N +I F +GG F+E + + +M + +PN T
Sbjct: 129 GRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETY 188
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD---AYGLLDE 118
E ++ GL +++K+ + G++PS Y ++ Y ++ +++ A+ ++E
Sbjct: 189 EGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNE 248
Query: 119 MHTNRISNIHQVTGQMI-KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ + + QM KG ES E + K+ G +N ++EA
Sbjct: 249 VGSKPTVETYNSLIQMFAKGGLYKES-----EAILLKMGQSGVARNRDTFNGVIEAFRQG 303
Query: 178 GLRERAARVLDEATKRGLFPE 198
G E A + E K P+
Sbjct: 304 GQFEEAIKAYVEMEKARCDPD 324
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE + M E V N +++ +I A +GG E+A K + M + P+ +
Sbjct: 163 GGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKA 222
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
V+ Y A L +E+ F + G P+V Y L+ ++AK + ++ +L +M
Sbjct: 223 YTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKM 281
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T +LS GL DE++ F+ + GILP + Y L+ + K NR + LL EM
Sbjct: 12 TYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEM 71
Query: 120 HT 121
+
Sbjct: 72 ES 73
>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic [Vitis vinifera]
Length = 869
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/248 (79%), Positives = 223/248 (89%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGLYKE +AIL +M +SGVARN D+FN VIEAFRQGG+FEEAIKAYVEMEK RCDP+E+T
Sbjct: 510 GGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQT 569
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
LEAVLSVYCFAGLV+ES+EQF EIK+ GILPSVMCYCM+LAVYAK++RWDDA+ LLDEM
Sbjct: 570 LEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMF 629
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
TNR+SNIHQV GQMI+G++DD+SNWQMVEYVF+KL EG LG+RFYN LLEALW LG +
Sbjct: 630 TNRVSNIHQVIGQMIRGDYDDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLLEALWWLGQK 689
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
ERA RVL+EATKRGLFPELFR NKLVWSVDVHRMWEG A TAISVWLN M+EMF+ G+DL
Sbjct: 690 ERATRVLNEATKRGLFPELFRKNKLVWSVDVHRMWEGAACTAISVWLNNMHEMFISGDDL 749
Query: 241 PQLATVVV 248
PQLA+ VV
Sbjct: 750 PQLASAVV 757
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 9/188 (4%)
Query: 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ F V + F Q G ++ +++ + M++ + C PNE ++ V GL+++ +E F
Sbjct: 111 NDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFD 170
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS----NIHQVTGQMIKGE 138
E+ S G+ PSV + L+ Y ++ ++ + LLD M R+S + V +G
Sbjct: 171 EMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGG 230
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
D W+ + +F ++ EG + YN LL A GL + A V + G+ P+
Sbjct: 231 LD----WEELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPD 286
Query: 199 LFRHNKLV 206
+ ++ LV
Sbjct: 287 ITTYSYLV 294
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 113/249 (45%), Gaps = 17/249 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + + M+E G+ + +++ ++E F + R E+ + EME P+ +
Sbjct: 266 GLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSY 325
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L + +G + E+ F++++ +G +P+ Y +LL +Y + R+DD L EM
Sbjct: 326 NVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEM-- 383
Query: 122 NRISNI--HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
++SN + T ++ F + ++ V +F + E M Y L+ A GL
Sbjct: 384 -KVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGL 442
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWS-----------VDVHRMWEGGAYTAISVWLN 228
E A ++L ++G+ P + ++ + V + M E G+ + + N
Sbjct: 443 HEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETY-N 501
Query: 229 KMYEMFMMG 237
+ +MF G
Sbjct: 502 SLIQMFAKG 510
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 65/123 (52%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ + IL M+E GV +S ++ VIEA+ Q +EEA+ A+ M +V P T
Sbjct: 440 GGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVET 499
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ ++ GL ES+ ++ SG+ + + ++ + + ++++A EM
Sbjct: 500 YNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEME 559
Query: 121 TNR 123
R
Sbjct: 560 KAR 562
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 37/206 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++CQ I M GVA + SF A+I A+ + G+++ +++ M+K R P+ T
Sbjct: 160 GLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTY 219
Query: 62 EAVLSVYCFAGLV-DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ GL +E F +++ GI ++ Y LL+ A+ D+A
Sbjct: 220 NTVINSCARGGLDWEELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEA-------- 271
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
E VF +N G + Y+ L+E L
Sbjct: 272 ----------------------------EMVFRTMNEGGILPDITTYSYLVETFGKLNRL 303
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E+ + +L E G FP++ +N L+
Sbjct: 304 EKVSELLKEMESGGSFPDITSYNVLL 329
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 88/201 (43%), Gaps = 9/201 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y + + + M S N+ ++N +I F +GG F+E + + +M + +PN T
Sbjct: 371 GRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETY 430
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD---AYGLLDE 118
E ++ GL +++K+ + G++PS Y ++ Y ++ +++ A+ ++E
Sbjct: 431 EGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNE 490
Query: 119 MHTNRISNIHQVTGQMI-KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ + + QM KG ES E + K+ G +N ++EA
Sbjct: 491 VGSKPTVETYNSLIQMFAKGGLYKES-----EAILLKMGQSGVARNRDTFNGVIEAFRQG 545
Query: 178 GLRERAARVLDEATKRGLFPE 198
G E A + E K P+
Sbjct: 546 GQFEEAIKAYVEMEKARCDPD 566
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE + M E V N +++ +I A +GG E+A K + M + P+ +
Sbjct: 405 GGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKA 464
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
V+ Y A L +E+ F + G P+V Y L+ ++AK + ++ +L +M
Sbjct: 465 YTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKM 523
>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
Length = 866
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/248 (79%), Positives = 218/248 (87%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGLYKE +AIL +M + GVAR DSFN VIE FRQGG+FEEAIKAYVEMEK R P+ERT
Sbjct: 507 GGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERT 566
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
LEAVLSVYC AGLVDES EQFQEIK+SGILP+VMCYCM+LAVYAKS+RW++AY LLDEM
Sbjct: 567 LEAVLSVYCIAGLVDESVEQFQEIKASGILPNVMCYCMMLAVYAKSDRWNEAYELLDEML 626
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
TNR SNIHQV GQMIKG+FDD+SNWQMVEYVFDKLN EG GLGMRFYN LLEALW LG +
Sbjct: 627 TNRASNIHQVIGQMIKGDFDDDSNWQMVEYVFDKLNSEGCGLGMRFYNTLLEALWWLGQK 686
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
ERA RVL EATKRG FPELFR +KLVWSVD+HRMWEG AYTAISVWLN MYE+FM +D+
Sbjct: 687 ERAVRVLGEATKRGHFPELFRKSKLVWSVDIHRMWEGSAYTAISVWLNNMYEIFMNRQDI 746
Query: 241 PQLATVVV 248
PQLA+V+V
Sbjct: 747 PQLASVIV 754
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 103/234 (44%), Gaps = 10/234 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + + M+E GV + ++ +++ F + R ++ + EM P +
Sbjct: 263 GLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSY 322
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G ++++ F+ ++ +G +P+ Y +LL +Y K R+D+ L EM
Sbjct: 323 NVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEM-- 380
Query: 122 NRISNIHQ--VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
++SN T + F + ++ V +F + E M Y L+ A GL
Sbjct: 381 -KVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGL 439
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
+ A ++L +++G+ P + ++ + M+E T LN M EM
Sbjct: 440 HDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVT-----LNTMNEM 488
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 9/188 (4%)
Query: 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ F V + F Q G ++ +++ + M++ + C PNE ++S+ GL+++ + F+
Sbjct: 108 NDFALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFE 167
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS----NIHQVTGQMIKGE 138
E+ + G+ SV Y L+ Y ++ +++ + LL+ M R+S + V +G
Sbjct: 168 EMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGG 227
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
D W+ + +F ++ EG + YN LL A GL + A V + G+ P+
Sbjct: 228 LD----WEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPD 283
Query: 199 LFRHNKLV 206
+ + LV
Sbjct: 284 ITTYTYLV 291
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 14/225 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M+ +G S+N ++EA+ + G E+A + M++ C PN T +L +Y
Sbjct: 306 LLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYG 365
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIH 128
G DE +E F E+K S P Y L+ V+ + + + L +M + N+
Sbjct: 366 KHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNME 425
Query: 129 QVTGQMI---KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G + KG D++ + + ++ +G + Y ++EA + E A
Sbjct: 426 TYEGLIFACGKGGLHDDA-----KKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALV 480
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
L+ + G P + +N L++ GG Y L KM
Sbjct: 481 TLNTMNEMGSKPTIETYNTLIY-----MFARGGLYKETEAILLKM 520
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 1/197 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y E + + M S ++ ++N +I+ F +GG F+E + + +M + +PN T
Sbjct: 368 GRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETY 427
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
E ++ GL D++K+ + G++PS Y ++ Y ++ +++A L+ M+
Sbjct: 428 EGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNE 487
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I F ++ E + K+ G +N ++E G E
Sbjct: 488 MGSKPTIETYNTLIY-MFARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFE 546
Query: 182 RAARVLDEATKRGLFPE 198
A + E K L P+
Sbjct: 547 EAIKAYVEMEKSRLVPD 563
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 37/206 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++C I M GV+R+ S+ A+I ++ + G++E +++ M+K R P+ T
Sbjct: 157 GLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTY 216
Query: 62 EAVLSVYCFAGLVDES-KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ GL E F E++ GI P ++ Y LL A SNR GL DE
Sbjct: 217 NTVINSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLC--ACSNR-----GLGDE-- 267
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
E VF +N G + Y L++ L
Sbjct: 268 ---------------------------AEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRL 300
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
++ + +L E G PE+ +N L+
Sbjct: 301 DKVSELLKEMASTGNVPEISSYNVLL 326
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE + M+E V N +++ +I A +GG ++A K + M + P+ +
Sbjct: 402 GGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKA 461
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
V+ Y A + +E+ + G P++ Y L+ ++A+ + + +L +M
Sbjct: 462 YTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKM 520
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/247 (77%), Positives = 219/247 (88%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGLYKE +AI+ +M ESGVAR+ DSFN VIE +RQGG+FEEAIK YVE+EK R P+ERT
Sbjct: 506 GGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERT 565
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
EAVLSVYC AGLVDES+EQF+EI++SGILPSVMCYCM++AVYA+SNRWDDAY +LDEM
Sbjct: 566 FEAVLSVYCTAGLVDESEEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEMV 625
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
TN++SNIHQV G+M+KG++DD SNWQMVEYVFDKLN EG GLGMRFYN LLEALW LG +
Sbjct: 626 TNKVSNIHQVVGKMMKGDYDDYSNWQMVEYVFDKLNSEGCGLGMRFYNTLLEALWWLGQK 685
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
ERAARVL EA KRGLFPELFR +KLVWSVDVHRMWEGGA TAISVWLN M+EMF+ GEDL
Sbjct: 686 ERAARVLSEAIKRGLFPELFRKSKLVWSVDVHRMWEGGACTAISVWLNNMHEMFLKGEDL 745
Query: 241 PQLATVV 247
P +A+VV
Sbjct: 746 PHVASVV 752
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 89/184 (48%), Gaps = 1/184 (0%)
Query: 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ F V + F Q G ++ +++ + M++ + C PNE ++S+ GL+++S E F+
Sbjct: 107 NDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFE 166
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDE 142
E+ + G+ SV Y L+ Y + +++ + LL+ M +++ +I
Sbjct: 167 EMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGG 226
Query: 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
NW+ + +F ++ EG + YN LL A GL + A V + G+ P++ +
Sbjct: 227 LNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTY 286
Query: 203 NKLV 206
LV
Sbjct: 287 RNLV 290
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 102/234 (43%), Gaps = 10/234 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + + M+E G+ + ++ ++E F + + E+ + EME P+ +
Sbjct: 262 GLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSY 321
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + + F++++ + +P+ + Y MLL +Y R+DD L EM
Sbjct: 322 NVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEM-- 379
Query: 122 NRISNIHQVTG--QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
++SN G ++ F + ++ V +F + E M Y L+ A GL
Sbjct: 380 -KVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGL 438
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
E A ++L ++G+ P + ++ + + +Y V N M EM
Sbjct: 439 HEDAKKILLHMDEKGIVPSTKAYTGVIEAYG-----QAASYEEALVMFNTMNEM 487
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 9/201 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M SG + S+N ++EA+ G A+ + +M++ RC PN T +L++Y
Sbjct: 305 LLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYG 364
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIH 128
G D+ +E F E+K S P V Y +L+ V+ + + + L +M N N+
Sbjct: 365 GHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMG 424
Query: 129 QVTGQMI---KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G + KG +++ + + ++ +G + Y ++EA E A
Sbjct: 425 TYEGLIYACGKGGLHEDA-----KKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALV 479
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ + + G P + +N L+
Sbjct: 480 MFNTMNEMGSKPTVETYNSLI 500
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 13/182 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y + + + M S + ++N +IE F +GG F+E + + +M + +PN T
Sbjct: 367 GRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTY 426
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA---YGLLDE 118
E ++ GL +++K+ + GI+PS Y ++ Y ++ +++A + ++E
Sbjct: 427 EGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNE 486
Query: 119 MHTN-RISNIHQVTGQMIKGEFDDESN---WQMVEYVF----DKLN--CEGYGLGMRFYN 168
M + + + + +G ES W+M E D N EGY G +F
Sbjct: 487 MGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEE 546
Query: 169 AL 170
A+
Sbjct: 547 AI 548
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 84/199 (42%), Gaps = 1/199 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE + M E V N ++ +I A +GG E+A K + M++ P+ +
Sbjct: 401 GGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKA 460
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ Y A +E+ F + G P+V Y L+ ++A+ + ++ ++ +M
Sbjct: 461 YTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMG 520
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ ++ +I+G + ++ + +L + R + A+L GL
Sbjct: 521 ESGVARDRDSFNGVIEG-YRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLV 579
Query: 181 ERAARVLDEATKRGLFPEL 199
+ + E G+ P +
Sbjct: 580 DESEEQFREIRASGILPSV 598
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERT 60
G Y+ +L RM + V + ++N VI + +GG +E + + EM P+ T
Sbjct: 191 GQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQPDIIT 250
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L+ GL DE++ F+ + G++P + Y L+ + K N+ + LL EM
Sbjct: 251 YNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEME 310
Query: 121 TN 122
++
Sbjct: 311 SS 312
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 88/209 (42%), Gaps = 2/209 (0%)
Query: 1 GGL-YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GGL ++ ++ + M G+ + ++N ++ A G +EA + M + P+
Sbjct: 225 GGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDIT 284
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T ++ + +++ E +E++SSG LP + Y +LL YA A G+ +M
Sbjct: 285 TYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQM 344
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
R + VT M+ + + V +F ++ + YN L+E G
Sbjct: 345 QEARCVP-NAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGY 403
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWS 208
+ + + + + P + + L+++
Sbjct: 404 FKEVVTLFHDMVEENVEPNMGTYEGLIYA 432
>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 857
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/248 (76%), Positives = 222/248 (89%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGLYKE +AILSRM+ESG+ R+ SFN VIEAFRQGG++EEA+K+YVEMEK C+PNE T
Sbjct: 498 GGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELT 557
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
LEAVLS+YC AGLVDE +EQFQEIK+SGILPSVMCYCM+LA+YAK++R +DAY L+D M
Sbjct: 558 LEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYAKNDRLNDAYNLIDAMI 617
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T R+S+IHQV GQMIKG+FDDESNWQ+VEYVFDKLN EG GLGMRFYNALLEALWC+ R
Sbjct: 618 TMRVSDIHQVIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWCMFQR 677
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
ERAARVL+EA+KRGLFPELFR +KLVWSVDVHRM EGGA TA+SVWLN ++EM M G+DL
Sbjct: 678 ERAARVLNEASKRGLFPELFRKSKLVWSVDVHRMSEGGALTALSVWLNNVHEMSMTGDDL 737
Query: 241 PQLATVVV 248
P++ATVVV
Sbjct: 738 PEVATVVV 745
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 96/198 (48%), Gaps = 5/198 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + + M+ESG+ + ++++ +++ F + R E+ + EME P+ +
Sbjct: 254 GLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSY 313
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E+ F++++++G + + Y +LL +Y K R+DD L EM
Sbjct: 314 NVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEM-- 371
Query: 122 NRISNIHQVTG--QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
++SN G ++ F + ++ V +F + E M+ Y L+ A GL
Sbjct: 372 -KVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGL 430
Query: 180 RERAARVLDEATKRGLFP 197
E A ++L ++G+ P
Sbjct: 431 YEDAKKILLHMNEKGVVP 448
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 94/190 (49%), Gaps = 9/190 (4%)
Query: 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ F V + F Q G ++ +++ + M++ + C PNE ++++ GL+D+ +E F
Sbjct: 99 NDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFD 158
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS----NIHQVTGQMIKGE 138
E+ S+G++ +V Y ++ Y ++ ++ + LL+ M R+S + V +G
Sbjct: 159 EMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGG 218
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
D W+ + +F ++ EG + YN LL A GL + A V + G+ P+
Sbjct: 219 LD----WEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPD 274
Query: 199 LFRHNKLVWS 208
+ ++ LV +
Sbjct: 275 INTYSYLVQT 284
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 2/194 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +C+ + M +GV R S+ A+I A+ + G+F +++ M++ R P+ T
Sbjct: 148 GLLDKCREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTY 207
Query: 62 EAVLSVYCFAGLVDES-KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ GL E F E++ GI P V+ Y LL A D+A + M+
Sbjct: 208 NTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMN 267
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ I +++ F + + V + ++ C G + YN LLEA LG
Sbjct: 268 ESGIVPDINTYSYLVQ-TFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSI 326
Query: 181 ERAARVLDEATKRG 194
+ A V + G
Sbjct: 327 KEAMGVFRQMQAAG 340
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 86/201 (42%), Gaps = 5/201 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE + M+E V N ++ +I A +GG +E+A K + M + P+ +
Sbjct: 393 GGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKA 452
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ + A L +E+ F + G P+V Y L+ +A+ + +A +L M+
Sbjct: 453 YTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMN 512
Query: 121 TNRIS-NIHQVTGQMIKGEFDDESNWQMVEYV-FDKLNCEGYGLGMRFYNALLEALWCLG 178
+ + ++H G + + + YV +K NCE L + A+L G
Sbjct: 513 ESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLE---AVLSIYCSAG 569
Query: 179 LRERAARVLDEATKRGLFPEL 199
L + E G+ P +
Sbjct: 570 LVDEGEEQFQEIKASGILPSV 590
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 89/196 (45%), Gaps = 1/196 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y + + + M S ++ ++N +I+ F +GG F+E + + +M + +PN +T
Sbjct: 359 GRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTY 418
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
E ++ GL +++K+ + G++PS Y ++ + ++ +++A + + M+
Sbjct: 419 EGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNE 478
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + +I F ++ E + ++N G + +N ++EA G E
Sbjct: 479 VGSNPTVETYNSLIHA-FARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYE 537
Query: 182 RAARVLDEATKRGLFP 197
A + E K P
Sbjct: 538 EAVKSYVEMEKANCEP 553
>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/248 (76%), Positives = 217/248 (87%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGLYKE +AILSRM E G++RN+ SF+ +IE +RQ G++EEAIKA+VEMEK+RC+ +E+T
Sbjct: 512 GGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQT 571
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
LE VL VYCFAGLVDESKEQF EIK+SGILPSV+CYCM+LAVYAK+ RWDDA LLDEM
Sbjct: 572 LEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMI 631
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
R+S+IHQV GQMIKG++DD+SNWQMVEYVFDKLN EG G GMRFYN LLEALW LG +
Sbjct: 632 KTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEGCGFGMRFYNTLLEALWWLGQK 691
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
RAARVL EATKRGLFPELFR +KLVWSVDVHRMWEGGAYTA+S+W+NKM EM M GEDL
Sbjct: 692 GRAARVLTEATKRGLFPELFRQSKLVWSVDVHRMWEGGAYTAVSLWVNKMNEMLMDGEDL 751
Query: 241 PQLATVVV 248
PQLA VVV
Sbjct: 752 PQLAAVVV 759
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 95/188 (50%), Gaps = 9/188 (4%)
Query: 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ F+ V + F G ++ +++ + M++ + C PNE ++S+ GL+++ E F
Sbjct: 113 NDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFD 172
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NI---HQVTGQMIKGE 138
E+ S G++ SV Y L+ Y ++ +++ + LL+ M R+S NI + V +G+
Sbjct: 173 EMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGD 232
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
D W+ + +F ++ EG + YN LL A GL + A V + G+ PE
Sbjct: 233 LD----WEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPE 288
Query: 199 LFRHNKLV 206
+ ++ +V
Sbjct: 289 ITTYSYIV 296
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + + M E G+ +++ ++E F + G+ E+ EME P+ +
Sbjct: 268 GLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSY 327
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + G + E+ + F++++++G +P+ Y +LL +Y K R+DD L +M
Sbjct: 328 NVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKE 387
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + T ++ F + ++ V +F L E M Y L+ A GL E
Sbjct: 388 SS-AEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHE 446
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++L +G+ P ++ L+
Sbjct: 447 DAKKILFHMNGKGIVPSSKAYSGLI 471
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 60/119 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y + + + +M ES ++ ++N +I F +GG F+E + + ++ DPN T
Sbjct: 373 GRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETY 432
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
E ++ GL +++K+ + GI+PS Y L+ Y ++ +D+A + M+
Sbjct: 433 EGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMN 491
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 9/196 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ + IL M+ G+ +S +++ +IEA+ Q ++EA+ A+ M +V T
Sbjct: 442 GGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDT 501
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ + GL E + ++ GI + + ++ Y +S ++++A EM
Sbjct: 502 YNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEME 561
Query: 121 TNRI----SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
R + V G DES Q +E + G + Y +L
Sbjct: 562 KMRCELDEQTLEGVLGVYCFAGLVDESKEQFIE-----IKASGILPSVLCYCMMLAVYAK 616
Query: 177 LGLRERAARVLDEATK 192
G + A+ +LDE K
Sbjct: 617 NGRWDDASELLDEMIK 632
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 81/232 (34%), Gaps = 72/232 (31%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++C I M+ GV R+ S+ A+I A+ + G++E +++ M++ R PN T
Sbjct: 162 GLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTY 221
Query: 62 EAV------------------------------------LSVYCFAGLVDESKEQFQEIK 85
V LS GL DE++ F+ +
Sbjct: 222 NTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMI 281
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
GI+P + Y ++ + K + + LL EM +
Sbjct: 282 EGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMES------------------------ 317
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
EGY + YN L+EA LG + A V + G P
Sbjct: 318 ------------EGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVP 357
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 58/137 (42%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE + + + + N +++ ++ A +GG E+A K M P+ +
Sbjct: 407 GGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKA 466
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y A L DE+ F + G ++ Y L+ +A+ + + +L M
Sbjct: 467 YSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMR 526
Query: 121 TNRISNIHQVTGQMIKG 137
IS + +I+G
Sbjct: 527 EYGISRNAKSFSGIIEG 543
>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/248 (76%), Positives = 217/248 (87%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGLYKE +AILSRM E G++RN+ SF+ +IE +RQ G++EEAIKA+VEMEK+RC+ +E+T
Sbjct: 512 GGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQT 571
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
LE VL VYCFAGLVDESKEQF EIK+SGILPSV+CYCM+LAVYAK+ RWDDA LLDEM
Sbjct: 572 LEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMI 631
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
R+S+IHQV GQMIKG++DD+SNWQMVEYVFDKLN EG G GMRFYN LLEALW LG +
Sbjct: 632 KTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEGCGFGMRFYNTLLEALWWLGQK 691
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
RAARVL EATKRGLFPELFR +KLVWSVDVHRMWEGGAYTA+S+W+NKM EM M GEDL
Sbjct: 692 GRAARVLTEATKRGLFPELFRQSKLVWSVDVHRMWEGGAYTAVSLWVNKMNEMLMDGEDL 751
Query: 241 PQLATVVV 248
PQLA VVV
Sbjct: 752 PQLAAVVV 759
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 95/188 (50%), Gaps = 9/188 (4%)
Query: 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ F+ V + F G ++ +++ + M++ + C PNE ++S+ GL+++ E F
Sbjct: 113 NDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFD 172
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NI---HQVTGQMIKGE 138
E+ S G++ SV Y L+ Y ++ +++ + LL+ M R+S NI + V +G+
Sbjct: 173 EMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGD 232
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
D W+ + +F ++ EG + YN LL A GL + A V + G+ PE
Sbjct: 233 LD----WEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPE 288
Query: 199 LFRHNKLV 206
+ ++ +V
Sbjct: 289 ITTYSYIV 296
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + + M E G+ +++ ++E F + G+ E+ EME P+ +
Sbjct: 268 GLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSY 327
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + G + E+ + F++++++G +P+ Y +LL +Y K R+DD L +M
Sbjct: 328 NVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKE 387
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + T ++ F + ++ V +F L E M Y L+ A GL E
Sbjct: 388 SS-AEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHE 446
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++L +G+ P ++ L+
Sbjct: 447 DAKKILFHMNGKGIVPSSKAYSGLI 471
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 60/119 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y + + + +M ES ++ ++N +I F +GG F+E + + ++ DPN T
Sbjct: 373 GRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETY 432
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
E ++ GL +++K+ + GI+PS Y L+ Y ++ +D+A + M+
Sbjct: 433 EGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMN 491
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 9/196 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ + IL M+ G+ +S +++ +IEA+ Q ++EA+ A+ M +V T
Sbjct: 442 GGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDT 501
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ + GL E + ++ GI + + ++ Y +S ++++A EM
Sbjct: 502 YNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEME 561
Query: 121 TNRI----SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
R + V G DES Q +E + G + Y +L
Sbjct: 562 KMRCELDEQTLEGVLGVYCFAGLVDESKEQFIE-----IKASGILPSVLCYCMMLAVYAK 616
Query: 177 LGLRERAARVLDEATK 192
G + A+ +LDE K
Sbjct: 617 NGRWDDASELLDEMIK 632
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 94/267 (35%), Gaps = 77/267 (28%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++C I M+ GV R+ S+ A+I A+ + G++E +++ M++ R PN T
Sbjct: 162 GLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTY 221
Query: 62 EAV------------------------------------LSVYCFAGLVDESKEQFQEIK 85
V LS GL DE++ F+ +
Sbjct: 222 NTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMI 281
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
GI+P + Y ++ + K + + LL EM +
Sbjct: 282 EGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMES------------------------ 317
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
EGY + YN L+EA LG + A V + G P N
Sbjct: 318 ------------EGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVP-----NAS 360
Query: 206 VWSVDVHRMWEGGAYTAISVWLNKMYE 232
+S+ ++ + G Y + +M E
Sbjct: 361 TYSILLNLYGKHGRYDDVRELFLQMKE 387
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 58/137 (42%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE + + + + N +++ ++ A +GG E+A K M P+ +
Sbjct: 407 GGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKA 466
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y A L DE+ F + G ++ Y L+ +A+ + + +L M
Sbjct: 467 YSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMR 526
Query: 121 TNRISNIHQVTGQMIKG 137
IS + +I+G
Sbjct: 527 EYGISRNAKSFSGIIEG 543
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/248 (76%), Positives = 219/248 (88%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGLYKE +AILSRM+ESG+ R+ SFN VI+AFRQGG++EEA+K+YVEMEK C+PNE T
Sbjct: 500 GGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELT 559
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
LE VLSVYC AGLVDES+EQFQEIK+SGILPSVMCYC++LA+YAK++R +DAY L+DEM
Sbjct: 560 LEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYAKNDRLNDAYNLIDEMI 619
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T R+S+IHQ GQMIKG+FDDESNWQ+VEYVFDKLN EG GLGMRFYNALLEALW + R
Sbjct: 620 TMRVSDIHQGIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWWMFQR 679
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
ERAARVL+EA+KRGLFPELFR +KLVWSVDVHRM EGGA TA+SVWLN M+EM G DL
Sbjct: 680 ERAARVLNEASKRGLFPELFRKSKLVWSVDVHRMSEGGALTALSVWLNNMHEMSRTGNDL 739
Query: 241 PQLATVVV 248
P+LATVVV
Sbjct: 740 PELATVVV 747
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 96/198 (48%), Gaps = 5/198 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + + M+ESG+ + ++++ +++ F + R E+ + EME P+ +
Sbjct: 256 GLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSY 315
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E+ + F++++++G + + Y +LL +Y K R+DD + EM
Sbjct: 316 NVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEM-- 373
Query: 122 NRISNIHQVTG--QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
++SN G ++ F + ++ V +F + E M Y L+ A GL
Sbjct: 374 -KVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGL 432
Query: 180 RERAARVLDEATKRGLFP 197
E A ++L ++G+ P
Sbjct: 433 YEDAKKILLHMNEKGIVP 450
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ F V + F Q G ++ +++ + M++ + C PNE ++++ GL+D+ +E F
Sbjct: 101 NDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREVFD 160
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS----NIHQVTGQMIKGE 138
E+ S+G+ +V Y ++ Y ++ ++ + LL+ M R+S + V +G
Sbjct: 161 EMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGG 220
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
D W+ + +F ++ EG + YN LL A GL + A V + G+ P+
Sbjct: 221 LD----WEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPD 276
Query: 199 LFRHNKLVWS 208
+ ++ LV +
Sbjct: 277 INTYSYLVQT 286
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 96/219 (43%), Gaps = 6/219 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + +M +G N+ +++ ++ + + GR+++ ++EM+ DP+ T
Sbjct: 326 GSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTY 385
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ V+ G E F ++ + P++ Y L+ K ++DA +L M+
Sbjct: 386 NILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNE 445
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I + +I+ F + ++ VF+ +N G + YN+ + A GL +
Sbjct: 446 KGIVPSSKAYTGVIEA-FGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYK 504
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
A +L + GL ++ N ++ + +GG Y
Sbjct: 505 EAEAILSRMNESGLKRDVHSFNGVIKA-----FRQGGQY 538
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 88/197 (44%), Gaps = 3/197 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y + + I M S ++ ++N +I+ F +GG F+E + + +M + +PN T
Sbjct: 361 GRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETY 420
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
E ++ GL +++K+ + GI+PS Y ++ + ++ +++A + + M
Sbjct: 421 EGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTM-- 478
Query: 122 NRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + SN T F ++ E + ++N G + +N +++A G
Sbjct: 479 NEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQY 538
Query: 181 ERAARVLDEATKRGLFP 197
E A + E K P
Sbjct: 539 EEAVKSYVEMEKANCEP 555
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 5/201 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE + M E V N +++ +I A +GG +E+A K + M + P+ +
Sbjct: 395 GGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKA 454
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ + A L +E+ F + G P+V Y + +A+ + +A +L M+
Sbjct: 455 YTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMN 514
Query: 121 TNRIS-NIHQVTGQMIKGEFDDESNWQMVEYV-FDKLNCEGYGLGMRFYNALLEALWCLG 178
+ + ++H G + + + YV +K NCE L + +L G
Sbjct: 515 ESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLE---VVLSVYCSAG 571
Query: 179 LRERAARVLDEATKRGLFPEL 199
L + + E G+ P +
Sbjct: 572 LVDESEEQFQEIKASGILPSV 592
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 2/194 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +C+ + M +GVAR + AVI A+ + G+F +++ M++ R P+ T
Sbjct: 150 GLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTY 209
Query: 62 EAVLSVYCFAGLVDES-KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ GL E F E++ GI P V+ Y LL A D+A + M+
Sbjct: 210 NTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMN 269
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ I +++ F + + V + ++ G + YN LLEA LG
Sbjct: 270 ESGIVPDINTYSYLVQ-TFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSI 328
Query: 181 ERAARVLDEATKRG 194
+ A V + G
Sbjct: 329 KEAMDVFRQMQAAG 342
>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
Length = 863
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/247 (74%), Positives = 215/247 (87%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL KE +AILSR+ +SG+ RN D+FNA IEA++QGG+FEEA+K YV+MEK RCDP+ERT
Sbjct: 505 GGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERT 564
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
LEAVLSVY FA LVDE +EQF+E+K+S ILPS+MCYCM+LAVY K+ RWDD LL+EM
Sbjct: 565 LEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEML 624
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+NR+SNIHQV GQMIKG++DD+SNWQ+VEYV DKLN EG GLG+RFYNALL+ALW LG +
Sbjct: 625 SNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQK 684
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
ERAARVL+EATKRGLFPELFR NKLVWSVDVHRM EGG YTA+SVWLN M +M + GEDL
Sbjct: 685 ERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDMNDMLLNGEDL 744
Query: 241 PQLATVV 247
PQLA VV
Sbjct: 745 PQLAVVV 751
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 9/188 (4%)
Query: 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ F V + F G ++ +++ + M++ + C PNE ++S+ GL+D+ E F
Sbjct: 106 NDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFD 165
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS----NIHQVTGQMIKGE 138
E+ S G+ SV Y L+ Y ++ R++ + LLD M ++IS + V +G
Sbjct: 166 EMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGG 225
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
D W+ + +F ++ EG + YN LL A GL + A V G+ P+
Sbjct: 226 LD----WEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPD 281
Query: 199 LFRHNKLV 206
L ++ LV
Sbjct: 282 LTTYSHLV 289
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 94/203 (46%), Gaps = 9/203 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M+ G + S+N ++EA+ + G +EA+ + +M+ C PN T +L+++
Sbjct: 304 LLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFG 363
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G D+ ++ F E+KSS P Y +L+ V+ + + + L +M I +
Sbjct: 364 QSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDME 423
Query: 130 VTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+I KG +++ ++++Y + + Y ++EA L E A
Sbjct: 424 TYEGIIFACGKGGLHEDAR-KILQY----MTANDIVPSSKAYTGVIEAFGQAALYEEALV 478
Query: 186 VLDEATKRGLFPELFRHNKLVWS 208
+ + G P + ++ L++S
Sbjct: 479 AFNTMHEVGSNPSIETYHSLLYS 501
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 65/123 (52%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ + IL M+ + + +S ++ VIEAF Q +EEA+ A+ M +V +P+ T
Sbjct: 435 GGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIET 494
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L + GLV ES+ + SGI + + + Y + ++++A +M
Sbjct: 495 YHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDME 554
Query: 121 TNR 123
+R
Sbjct: 555 KSR 557
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 94/219 (42%), Gaps = 6/219 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + +M +G N+++++ ++ F Q GR+++ + ++EM+ DP+ T
Sbjct: 331 GSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATY 390
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ V+ G E F ++ I P + Y ++ K +DA +L M
Sbjct: 391 NILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTA 450
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N I + +I+ F + ++ F+ ++ G + Y++LL + GL +
Sbjct: 451 NDIVPSSKAYTGVIEA-FGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVK 509
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
+ +L G+ N+ ++ + +GG +
Sbjct: 510 ESEAILSRLVDSGI-----PRNRDTFNAQIEAYKQGGKF 543
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 7/223 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +C + M GV+R+ S+ A+I A+ + GR+E +++ M+ + P+ T
Sbjct: 155 GLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTY 214
Query: 62 EAVLSVYCFAGLVDES-KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ GL E F E++ GI P ++ Y LL+ A D+A + M+
Sbjct: 215 NTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMN 274
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I +++ F + V + ++ G + YN LLEA G
Sbjct: 275 DGGIVPDLTTYSHLVE-TFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSI 333
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAI 223
+ A V + G P N +SV ++ + G Y +
Sbjct: 334 KEAMGVFHQMQAAGCTP-----NANTYSVLLNLFGQSGRYDDV 371
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 94/233 (40%), Gaps = 9/233 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERT 60
G Y+ +L RM ++ + ++N VI A +GG +E + + EM P+ T
Sbjct: 190 GRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVT 249
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+LS GL DE++ F+ + GI+P + Y L+ + K R + LL EM
Sbjct: 250 YNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMA 309
Query: 121 TNRISNIHQVTGQMIKGE-FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ ++ +T + E + + + VF ++ G Y+ LL G
Sbjct: 310 SG--GSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGR 367
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ ++ E P+ +N L + EGG + + + M E
Sbjct: 368 YDDVRQLFLEMKSSNTDPDAATYNIL-----IEVFGEGGYFKEVVTLFHDMVE 415
>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74850, chloroplastic; AltName: Full=Protein PLASTID
TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
Length = 862
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/247 (73%), Positives = 214/247 (86%), Gaps = 1/247 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL KE +AILSR+ +SG+ RN D+FNA IEA++QGG+FEEA+K YV+MEK RCDP+ERT
Sbjct: 505 GGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERT 564
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
LEAVLSVY FA LVDE +EQF+E+K+S ILPS+MCYCM+LAVY K+ RWDD LL+EM
Sbjct: 565 LEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEML 624
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+NR+SNIHQV GQMIKG++DD+SNWQ+VEYV DKLN EG GLG+RFYNALL+ALW LG +
Sbjct: 625 SNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQK 684
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
ERAARVL+EATKRGLFPELFR NKLVWSVDVHRM EGG YTA+SVWLN + +M + G DL
Sbjct: 685 ERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDINDMLLKG-DL 743
Query: 241 PQLATVV 247
PQLA VV
Sbjct: 744 PQLAVVV 750
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 9/188 (4%)
Query: 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ F V + F G ++ +++ + M++ + C PNE ++S+ GL+D+ E F
Sbjct: 106 NDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFD 165
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS----NIHQVTGQMIKGE 138
E+ S G+ SV Y L+ Y ++ R++ + LLD M +IS + V +G
Sbjct: 166 EMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGG 225
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
D W+ + +F ++ EG + YN LL A GL + A V G+ P+
Sbjct: 226 LD----WEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPD 281
Query: 199 LFRHNKLV 206
L ++ LV
Sbjct: 282 LTTYSHLV 289
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 65/123 (52%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ + IL M+ + + +S ++ VIEAF Q +EEA+ A+ M +V +P+ T
Sbjct: 435 GGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIET 494
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L + GLV ES+ + SGI + + + Y + ++++A +M
Sbjct: 495 FHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDME 554
Query: 121 TNR 123
+R
Sbjct: 555 KSR 557
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L K C +L M+ G + S+N ++EA+ + G +EA+ + +M+ C PN T
Sbjct: 298 LEKVCD-LLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYS 356
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L+++ +G D+ ++ F E+KSS P Y +L+ V+ + + + L +M
Sbjct: 357 VLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDM 413
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 94/219 (42%), Gaps = 6/219 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + +M +G N+++++ ++ F Q GR+++ + ++EM+ DP+ T
Sbjct: 331 GSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATY 390
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ V+ G E F ++ I P + Y ++ K +DA +L M
Sbjct: 391 NILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTA 450
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N I + +I+ F + ++ F+ ++ G + +++LL + GL +
Sbjct: 451 NDIVPSSKAYTGVIEA-FGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVK 509
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
+ +L G+ N+ ++ + +GG +
Sbjct: 510 ESEAILSRLVDSGI-----PRNRDTFNAQIEAYKQGGKF 543
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 7/223 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +C + M GV+R+ S+ A+I A+ + GR+E +++ M+ + P+ T
Sbjct: 155 GLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTY 214
Query: 62 EAVLSVYCFAGLVDES-KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ GL E F E++ GI P ++ Y LL+ A D+A + M+
Sbjct: 215 NTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMN 274
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I +++ F + V + ++ G + YN LLEA G
Sbjct: 275 DGGIVPDLTTYSHLVE-TFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSI 333
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAI 223
+ A V + G P N +SV ++ + G Y +
Sbjct: 334 KEAMGVFHQMQAAGCTP-----NANTYSVLLNLFGQSGRYDDV 371
>gi|115456295|ref|NP_001051748.1| Os03g0824100 [Oryza sativa Japonica Group]
gi|113550219|dbj|BAF13662.1| Os03g0824100, partial [Oryza sativa Japonica Group]
Length = 691
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 146/249 (58%), Positives = 194/249 (77%), Gaps = 1/249 (0%)
Query: 1 GGLYKECQAILSRMSE-SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GGL++E +AI SRM+ + + ++ DSF+A+IEA+ QG + ++A+KAY+EM K R +P+ER
Sbjct: 331 GGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDER 390
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+LE VL+ YC AG++DESKEQF+E++S +PS++ YCM+L++YA+++RW DAY LL+EM
Sbjct: 391 SLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 450
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
TNR S+ HQV MIKGE+DD+SNWQMVEYV D N EG +RF+NALL+ LW G
Sbjct: 451 KTNRASSTHQVIASMIKGEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQ 510
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239
+ RAARVLD+A K GLFPELFR KLVWS DVHRM GG+ A+SVWLNK+Y+ ED
Sbjct: 511 KGRAARVLDQALKYGLFPELFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDED 570
Query: 240 LPQLATVVV 248
LPQLA+VVV
Sbjct: 571 LPQLASVVV 579
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 3/220 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L M E+GV ++ S+ +++AF G + + EM P+ ++
Sbjct: 92 QSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLM 151
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ G E+ +++++ G P+ Y +LL +Y + R+D L EM T
Sbjct: 152 EAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTTVPP 211
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ T ++ F D ++ V +F + + ++ A GL E A
Sbjct: 212 DT--ATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDARE 269
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
VLD T G+ P + LV ++ M+E AY A ++
Sbjct: 270 VLDYITTEGMVPTAKAYTGLVEALGHAAMYE-EAYVAFNM 308
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ + +L ++ G+ + ++ ++EA +EEA A+ M ++ P T
Sbjct: 261 GGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIET 320
Query: 61 LEAVLSVYCFAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+ + + GL E++ F + ++ I + L+ Y + + DDA EM
Sbjct: 321 YNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEM 380
Query: 120 HTNRIS 125
+R +
Sbjct: 381 RKSRFN 386
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 77/193 (39%), Gaps = 2/193 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L +M G + ++ +++ + + GRF+ + + EM + P+ T
Sbjct: 158 GATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREM-RTTVPPDTATY 216
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ V+ G E E FQ++ S + P + ++ + +DA +LD + T
Sbjct: 217 NVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITT 276
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + +++ + ++ F+ + G + YNAL A GL +
Sbjct: 277 EGMVPTAKAYTGLVEA-LGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQ 335
Query: 182 RAARVLDEATKRG 194
A + T
Sbjct: 336 EAEAIFSRMTNNA 348
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEA--IKAYVEMEKVRCDPNE 58
GG +KE + M S V + D+ V+ A +GG E+A + Y+ E + P
Sbjct: 226 GGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMV--PTA 283
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+ ++ A + +E+ F + G LP++ Y L +AK + +A +
Sbjct: 284 KAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSR 343
Query: 119 MHTN 122
M N
Sbjct: 344 MTNN 347
>gi|222626074|gb|EEE60206.1| hypothetical protein OsJ_13175 [Oryza sativa Japonica Group]
Length = 789
Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 146/249 (58%), Positives = 194/249 (77%), Gaps = 1/249 (0%)
Query: 1 GGLYKECQAILSRMSE-SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GGL++E +AI SRM+ + + ++ DSF+A+IEA+ QG + ++A+KAY+EM K R +P+ER
Sbjct: 309 GGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDER 368
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+LE VL+ YC AG++DESKEQF+E++S +PS++ YCM+L++YA+++RW DAY LL+EM
Sbjct: 369 SLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 428
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
TNR S+ HQV MIKGE+DD+SNWQMVEYV D N EG +RF+NALL+ LW G
Sbjct: 429 KTNRASSTHQVIASMIKGEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQ 488
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239
+ RAARVLD+A K GLFPELFR KLVWS DVHRM GG+ A+SVWLNK+Y+ ED
Sbjct: 489 KGRAARVLDQALKYGLFPELFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDED 548
Query: 240 LPQLATVVV 248
LPQLA+VVV
Sbjct: 549 LPQLASVVV 557
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 3/220 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L M E+GV ++ S+ +++AF G + + EM P+ ++
Sbjct: 70 QSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLM 129
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ G E+ +++++ G P+ Y +LL +Y + R+D L EM T
Sbjct: 130 EAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTTVPP 189
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ T ++ F D ++ V +F + + ++ A GL E A
Sbjct: 190 DT--ATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDARE 247
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
VLD T G+ P + LV ++ M+E AY A ++
Sbjct: 248 VLDYITTEGMVPTAKAYTGLVEALGHAAMYE-EAYVAFNM 286
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ + +L ++ G+ + ++ ++EA +EEA A+ M ++ P T
Sbjct: 239 GGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIET 298
Query: 61 LEAVLSVYCFAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+ + + GL E++ F + ++ I + L+ Y + + DDA EM
Sbjct: 299 YNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEM 358
Query: 120 HTNRIS 125
+R +
Sbjct: 359 RKSRFN 364
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 77/191 (40%), Gaps = 2/191 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L +M G + ++ +++ + + GRF+ + + EM + P+ T
Sbjct: 136 GATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREM-RTTVPPDTATY 194
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ V+ G E E FQ++ S + P + ++ + +DA +LD + T
Sbjct: 195 NVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITT 254
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + +++ + ++ F+ + G + YNAL A GL +
Sbjct: 255 EGMVPTAKAYTGLVEA-LGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQ 313
Query: 182 RAARVLDEATK 192
A + T
Sbjct: 314 EAEAIFSRMTN 324
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEA--IKAYVEMEKVRCDPNE 58
GG +KE + M S V + D+ V+ A +GG E+A + Y+ E + P
Sbjct: 204 GGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMV--PTA 261
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+ ++ A + +E+ F + G LP++ Y L +AK + +A +
Sbjct: 262 KAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSR 321
Query: 119 MHTN 122
M N
Sbjct: 322 MTNN 325
>gi|218194011|gb|EEC76438.1| hypothetical protein OsI_14128 [Oryza sativa Indica Group]
Length = 669
Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 146/249 (58%), Positives = 194/249 (77%), Gaps = 1/249 (0%)
Query: 1 GGLYKECQAILSRMSE-SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GGL++E +AI SRM+ + + ++ DSF+A+IEA+ QG + ++A+KAY+EM K R +P+ER
Sbjct: 309 GGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDER 368
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+LE VL+ YC AG++DESKEQF+E++S +PS++ YCM+L++YA+++RW DAY LL+EM
Sbjct: 369 SLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 428
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
TNR S+ HQV MIKGE+DD+SNWQMVEYV D N EG +RF+NALL+ LW G
Sbjct: 429 KTNRASSTHQVIASMIKGEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQ 488
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239
+ RAARVLD+A K GLFPELFR KLVWS DVHRM GG+ A+SVWLNK+Y+ ED
Sbjct: 489 KGRAARVLDQALKYGLFPELFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDED 548
Query: 240 LPQLATVVV 248
LPQLA+VVV
Sbjct: 549 LPQLASVVV 557
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 3/220 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L M E+GV ++ S+ +++AF G + + EM P+ ++
Sbjct: 70 QSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMAATGHTPDPSAYLGLM 129
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ G E+ +++++ G P+ Y +LL +Y + R+D L EM T
Sbjct: 130 EAHTRVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTTVPP 189
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ T ++ F D ++ V +F + + ++ A GL E A
Sbjct: 190 DT--ATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDARE 247
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
VLD T G+ P + LV ++ M+E AY A ++
Sbjct: 248 VLDYITTEGMVPTAKAYTGLVEALGHAAMYE-EAYVAFNM 286
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ + +L ++ G+ + ++ ++EA +EEA A+ M ++ P T
Sbjct: 239 GGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIET 298
Query: 61 LEAVLSVYCFAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+ + + GL E++ F + ++ I + L+ Y + + DDA EM
Sbjct: 299 YNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEM 358
Query: 120 HTNRIS 125
+R +
Sbjct: 359 RKSRFN 364
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 77/193 (39%), Gaps = 2/193 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L +M G + ++ +++ + + GRF+ + + EM + P+ T
Sbjct: 136 GATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREM-RTTVPPDTATY 194
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ V+ G E E FQ++ S + P + ++ + +DA +LD + T
Sbjct: 195 NVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITT 254
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + +++ + ++ F+ + G + YNAL A GL +
Sbjct: 255 EGMVPTAKAYTGLVEA-LGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQ 313
Query: 182 RAARVLDEATKRG 194
A + T
Sbjct: 314 EAEAIFSRMTNNA 326
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEA--IKAYVEMEKVRCDPNE 58
GG +KE + M S V + D+ V+ A +GG E+A + Y+ E + P
Sbjct: 204 GGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMV--PTA 261
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+ ++ A + +E+ F + G LP++ Y L +AK + +A +
Sbjct: 262 KAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSR 321
Query: 119 MHTN 122
M N
Sbjct: 322 MTNN 325
>gi|27545040|gb|AAO18446.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
gi|108711829|gb|ABF99624.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 863
Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 146/249 (58%), Positives = 194/249 (77%), Gaps = 1/249 (0%)
Query: 1 GGLYKECQAILSRMSE-SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GGL++E +AI SRM+ + + ++ DSF+A+IEA+ QG + ++A+KAY+EM K R +P+ER
Sbjct: 503 GGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDER 562
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+LE VL+ YC AG++DESKEQF+E++S +PS++ YCM+L++YA+++RW DAY LL+EM
Sbjct: 563 SLEGVLNAYCIAGVIDESKEQFEELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEM 622
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
TNR S+ HQV MIKGE+DD+SNWQMVEYV D N EG +RF+NALL+ LW G
Sbjct: 623 KTNRASSTHQVIASMIKGEYDDDSNWQMVEYVLDNSNLEGCDYSLRFFNALLDVLWWFGQ 682
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239
+ RAARVLD+A K GLFPELFR KLVWS DVHRM GG+ A+SVWLNK+Y+ ED
Sbjct: 683 KGRAARVLDQALKYGLFPELFRDTKLVWSADVHRMSVGGSLVAVSVWLNKLYDRLKGDED 742
Query: 240 LPQLATVVV 248
LPQLA+VVV
Sbjct: 743 LPQLASVVV 751
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 3/220 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L M E+GV ++ S+ +++AF G + + EM P+ ++
Sbjct: 264 QSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLM 323
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ G E+ +++++ G P+ Y +LL +Y + R+D L EM T
Sbjct: 324 EAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTTVPP 383
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ T ++ F D ++ V +F + + ++ A GL E A
Sbjct: 384 DT--ATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDARE 441
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
VLD T G+ P + LV ++ M+E AY A ++
Sbjct: 442 VLDYITTEGMVPTAKAYTGLVEALGHAAMYE-EAYVAFNM 480
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ + +L ++ G+ + ++ ++EA +EEA A+ M ++ P T
Sbjct: 433 GGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIET 492
Query: 61 LEAVLSVYCFAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+ + + GL E++ F + ++ I + L+ Y + + DDA EM
Sbjct: 493 YNALANAFAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEM 552
Query: 120 HTNRIS 125
+R +
Sbjct: 553 RKSRFN 558
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 77/191 (40%), Gaps = 2/191 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L +M G + ++ +++ + + GRF+ + + EM + P+ T
Sbjct: 330 GATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREM-RTTVPPDTATY 388
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ V+ G E E FQ++ S + P + ++ + +DA +LD + T
Sbjct: 389 NVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITT 448
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + +++ + ++ F+ + G + YNAL A GL +
Sbjct: 449 EGMVPTAKAYTGLVEA-LGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQ 507
Query: 182 RAARVLDEATK 192
A + T
Sbjct: 508 EAEAIFSRMTN 518
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEA--IKAYVEMEKVRCDPNE 58
GG +KE + M S V + D+ V+ A +GG E+A + Y+ E + P
Sbjct: 398 GGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVLDYITTEGMV--PTA 455
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+ ++ A + +E+ F + G LP++ Y L +AK + +A +
Sbjct: 456 KAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSR 515
Query: 119 MHTN 122
M N
Sbjct: 516 MTNN 519
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 18/141 (12%)
Query: 1 GGLYKECQAILSRMS----ESGVARNSDS---------FNAVIEAFRQGGRFEEAIKAYV 47
GG E ++++ R+S +AR ++ F AV F + G ++ +++ +
Sbjct: 63 GGHSYEVESLIDRLSNLPPRGSIARCLETARHRLTLQDFAAVYREFSRRGDWQRSLRLFK 122
Query: 48 EMEKVR-CDPNERTLEAVLSVYCFAG--LVDESKEQFQEIKSSGILPSVMCYCMLLAVYA 104
M++ C P+E V+ V G L+D+ E F ++ S + + Y L+A YA
Sbjct: 123 YMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPSESR--TALSYTSLIAAYA 180
Query: 105 KSNRWDDAYGLLDEMHTNRIS 125
++ ++A LLD+M + ++
Sbjct: 181 RNALHEEARELLDQMKASGVA 201
>gi|414888268|tpg|DAA64282.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
Length = 868
Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 148/249 (59%), Positives = 194/249 (77%), Gaps = 1/249 (0%)
Query: 1 GGLYKECQAILSRMSE-SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GGL++E +AI SRMS +G+ ++ DSF+A+IEA+ QG R ++A+KAY+EM K R +P+ER
Sbjct: 508 GGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDER 567
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+LE VL+ YC AG++DESKEQF+E++SS +PSV+ YCM+L++YA+++RW DAY LL+EM
Sbjct: 568 SLEGVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 627
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
TNR S+ HQV +IKGE+DD SNWQMVEYV + EG RF+NALL LW G
Sbjct: 628 KTNRASSTHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQ 687
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239
+ RAARVLD+A K GLFPEL+R KLVWS+DVHRM GGA A+SVWLNK+Y+ + ED
Sbjct: 688 KGRAARVLDQAVKFGLFPELYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDED 747
Query: 240 LPQLATVVV 248
LPQLA+VVV
Sbjct: 748 LPQLASVVV 756
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 11/243 (4%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L + + +L M E+GV+ ++ S+ +++AF G A + + EM +
Sbjct: 266 LADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYL 325
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ + G ++ +++++ G P+ Y +LL +Y + R+D L EM T
Sbjct: 326 GLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA 385
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ T ++ F D ++ V +F + G M ++ A GL
Sbjct: 386 VPPDT--ATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGD 443
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQ 242
A VL+ T+ G+ P + LV ++ M+E AY A N M E+ LP
Sbjct: 444 AREVLEYMTREGMVPTADAYTGLVEALGHAAMYE-EAYVA----FNMMTEI----GSLPT 494
Query: 243 LAT 245
L T
Sbjct: 495 LET 497
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+ + + +L M+ G+ +D++ ++EA +EEA A+ M ++ P T
Sbjct: 438 GGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLET 497
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIK-SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+ Y GL E++ F + ++GI S + L+ Y + +R DDA EM
Sbjct: 498 YNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEM 557
Query: 120 HTNRIS 125
+R +
Sbjct: 558 RKSRFN 563
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSVYCFAG--LVDESKEQFQ 82
F AV F + G ++ +++ + M++ C P+E V+ V G L+D+ E F
Sbjct: 106 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFH 165
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG---EF 139
++ + + + Y L+A YA++ ++A LLD+M ++ ++
Sbjct: 166 DLPAESR--TALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARAT 223
Query: 140 DDESNWQMVEYVFDKLNCEGYG---LGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
D + M+ +F ++ + + YN LL A L +++ +L + G+
Sbjct: 224 DPPVPFDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVS 283
Query: 197 PELFRHNKLV 206
P+ + +V
Sbjct: 284 PDTVSYRHIV 293
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+L +M G A + ++ +++ + + GRF+ + + EM + P+ T
Sbjct: 335 GATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREM-RTAVPPDTATY 393
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ V+ G E E F ++ +G+ P ++ ++A DA +L+ M
Sbjct: 394 NVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYM 451
>gi|414888270|tpg|DAA64284.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
Length = 890
Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 148/249 (59%), Positives = 194/249 (77%), Gaps = 1/249 (0%)
Query: 1 GGLYKECQAILSRMSE-SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GGL++E +AI SRMS +G+ ++ DSF+A+IEA+ QG R ++A+KAY+EM K R +P+ER
Sbjct: 530 GGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDER 589
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+LE VL+ YC AG++DESKEQF+E++SS +PSV+ YCM+L++YA+++RW DAY LL+EM
Sbjct: 590 SLEGVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 649
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
TNR S+ HQV +IKGE+DD SNWQMVEYV + EG RF+NALL LW G
Sbjct: 650 KTNRASSTHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQ 709
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239
+ RAARVLD+A K GLFPEL+R KLVWS+DVHRM GGA A+SVWLNK+Y+ + ED
Sbjct: 710 KGRAARVLDQAVKFGLFPELYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDED 769
Query: 240 LPQLATVVV 248
LPQLA+VVV
Sbjct: 770 LPQLASVVV 778
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 11/243 (4%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L + + +L M E+GV+ ++ S+ +++AF G A + + EM +
Sbjct: 288 LADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYL 347
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ + G ++ +++++ G P+ Y +LL +Y + R+D L EM T
Sbjct: 348 GLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA 407
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ T ++ F D ++ V +F + G M ++ A GL
Sbjct: 408 VPPDT--ATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGD 465
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQ 242
A VL+ T+ G+ P + LV ++ M+E AY A N M E+ LP
Sbjct: 466 AREVLEYMTREGMVPTADAYTGLVEALGHAAMYE-EAYVA----FNMMTEI----GSLPT 516
Query: 243 LAT 245
L T
Sbjct: 517 LET 519
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+ + + +L M+ G+ +D++ ++EA +EEA A+ M ++ P T
Sbjct: 460 GGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLET 519
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIK-SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+ Y GL E++ F + ++GI S + L+ Y + +R DDA EM
Sbjct: 520 YNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEM 579
Query: 120 HTNRIS 125
+R +
Sbjct: 580 RKSRFN 585
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSVYCFAG--LVDESKEQFQ 82
F AV F + G ++ +++ + M++ C P+E V+ V G L+D+ E F
Sbjct: 128 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFH 187
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG---EF 139
++ + + + Y L+A YA++ ++A LLD+M ++ ++
Sbjct: 188 DLPAESR--TALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARAT 245
Query: 140 DDESNWQMVEYVFDKLNCEGYG---LGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
D + M+ +F ++ + + YN LL A L +++ +L + G+
Sbjct: 246 DPPVPFDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVS 305
Query: 197 PELFRHNKLV 206
P+ + +V
Sbjct: 306 PDTVSYRHIV 315
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+L +M G A + ++ +++ + + GRF+ + + EM + P+ T
Sbjct: 357 GATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREM-RTAVPPDTATY 415
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ V+ G E E F ++ +G+ P ++ ++A DA +L+ M
Sbjct: 416 NVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYM 473
>gi|242032435|ref|XP_002463612.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
gi|241917466|gb|EER90610.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
Length = 638
Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 145/249 (58%), Positives = 195/249 (78%), Gaps = 1/249 (0%)
Query: 1 GGLYKECQAILSRMSE-SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GGL++E +AI SRMS +G+ +N DSF+A+IEA+ QG + ++A+KAY+EM K R +P+ER
Sbjct: 278 GGLFQEAEAIFSRMSNNAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDER 337
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+LE VL+ YC AG++DESKEQF+E++SS LPS++ YCM+L++YA+++RW DAY +L+EM
Sbjct: 338 SLEGVLNAYCIAGVIDESKEQFEELQSSVTLPSIIAYCMMLSLYARNDRWADAYDMLEEM 397
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
TNR S+ HQV +IKGE+DD SNWQMVEY + EG +RF+NALL+ LW G
Sbjct: 398 KTNRASSTHQVIASLIKGEYDDSSNWQMVEYALENSTMEGCDYSLRFFNALLDVLWWFGQ 457
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239
+ RAARVLD+A + GLFPEL+R KLVWS+DVHRM GGA A+SVWLNK+Y+ + ED
Sbjct: 458 KGRAARVLDQAVQFGLFPELYRDTKLVWSLDVHRMSVGGALVAVSVWLNKLYDRLVEDED 517
Query: 240 LPQLATVVV 248
LPQLA+VVV
Sbjct: 518 LPQLASVVV 526
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 11/243 (4%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L + + +L M E+GV+ ++ S+ +++AF G + + EM + +
Sbjct: 36 LADQSEMLLRTMLEAGVSPDTVSYRYIVDAFASAGNLSRVAELFSEMAVMGNTADASAYL 95
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ + G E+ +++++ G P+ Y +LL +Y + R+D L EM T
Sbjct: 96 GLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRTA 155
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ T ++ + D ++ V +F + G M ++ A GL E
Sbjct: 156 VPPDT--ATYNVLFRVYGDGGFFKEVVELFHDMLETGVEPDMVTCENVMAACGRGGLHED 213
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQ 242
A VL+ T+ G+ P + LV ++ M+E AY A N M E+ LP
Sbjct: 214 AREVLEYMTREGMVPTADAYTGLVEALGHAAMYE-EAYVA----FNMMTEI----GSLPT 264
Query: 243 LAT 245
L T
Sbjct: 265 LET 267
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L +M G A + ++ +++ + + GRF+ + + EM + P+ T
Sbjct: 105 GATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREM-RTAVPPDTATY 163
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ VY G E E F ++ +G+ P ++ ++A + +DA +L+ M
Sbjct: 164 NVLFRVYGDGGFFKEVVELFHDMLETGVEPDMVTCENVMAACGRGGLHEDAREVLEYM 221
>gi|414888267|tpg|DAA64281.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
Length = 873
Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 147/248 (59%), Positives = 193/248 (77%), Gaps = 1/248 (0%)
Query: 1 GGLYKECQAILSRMSE-SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GGL++E +AI SRMS +G+ ++ DSF+A+IEA+ QG R ++A+KAY+EM K R +P+ER
Sbjct: 508 GGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDER 567
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+LE VL+ YC AG++DESKEQF+E++SS +PSV+ YCM+L++YA+++RW DAY LL+EM
Sbjct: 568 SLEGVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEM 627
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
TNR S+ HQV +IKGE+DD SNWQMVEYV + EG RF+NALL LW G
Sbjct: 628 KTNRASSTHQVIASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQ 687
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239
+ RAARVLD+A K GLFPEL+R KLVWS+DVHRM GGA A+SVWLNK+Y+ + ED
Sbjct: 688 KGRAARVLDQAVKFGLFPELYRDTKLVWSLDVHRMSMGGALVAVSVWLNKLYDRLVEDED 747
Query: 240 LPQLATVV 247
LPQLA+VV
Sbjct: 748 LPQLASVV 755
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 11/243 (4%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L + + +L M E+GV+ ++ S+ +++AF G A + + EM +
Sbjct: 266 LADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYL 325
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ + G ++ +++++ G P+ Y +LL +Y + R+D L EM T
Sbjct: 326 GLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA 385
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ T ++ F D ++ V +F + G M ++ A GL
Sbjct: 386 VPPDT--ATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGD 443
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQ 242
A VL+ T+ G+ P + LV ++ M+E AY A N M E+ LP
Sbjct: 444 AREVLEYMTREGMVPTADAYTGLVEALGHAAMYE-EAYVA----FNMMTEI----GSLPT 494
Query: 243 LAT 245
L T
Sbjct: 495 LET 497
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+ + + +L M+ G+ +D++ ++EA +EEA A+ M ++ P T
Sbjct: 438 GGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLET 497
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIK-SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+ Y GL E++ F + ++GI S + L+ Y + +R DDA EM
Sbjct: 498 YNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEM 557
Query: 120 HTNRIS 125
+R +
Sbjct: 558 RKSRFN 563
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSVYCFAG--LVDESKEQFQ 82
F AV F + G ++ +++ + M++ C P+E V+ V G L+D+ E F
Sbjct: 106 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFH 165
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG---EF 139
++ + + + Y L+A YA++ ++A LLD+M ++ ++
Sbjct: 166 DLPAESR--TALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARAT 223
Query: 140 DDESNWQMVEYVFDKLNCEGYG---LGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
D + M+ +F ++ + + YN LL A L +++ +L + G+
Sbjct: 224 DPPVPFDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVS 283
Query: 197 PELFRHNKLV 206
P+ + +V
Sbjct: 284 PDTVSYRHIV 293
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+L +M G A + ++ +++ + + GRF+ + + EM + P+ T
Sbjct: 335 GATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREM-RTAVPPDTATY 393
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ V+ G E E F ++ +G+ P ++ ++A DA +L+ M
Sbjct: 394 NVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYM 451
>gi|357123530|ref|XP_003563463.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Brachypodium distachyon]
Length = 862
Score = 316 bits (809), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 145/249 (58%), Positives = 191/249 (76%), Gaps = 1/249 (0%)
Query: 1 GGLYKECQAILSRMSES-GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GGL++E ++I SRM+ S G+ +N DSF+A+IEA+ QG + ++A+KAY+EM K R +P+ER
Sbjct: 502 GGLFQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDER 561
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+LE VL+ YC AG++DESKEQF+EI+S+ +PS++ YCM+L++YA+++RW DAY LL+EM
Sbjct: 562 SLEGVLNAYCIAGVIDESKEQFEEIQSNMAVPSIIAYCMMLSLYARNDRWADAYDLLEEM 621
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
TNR S+ HQV MI+GE+DD SNWQMVEY D N EG +RF+NALL+ LW G
Sbjct: 622 KTNRASSTHQVIASMIQGEYDDSSNWQMVEYALDSSNLEGCDYSLRFFNALLDVLWWFGQ 681
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239
+ RAARVLD A GLFPEL R KLVWS+DVHRM GGA A+SVWLNK+Y +D
Sbjct: 682 KARAARVLDHAVNSGLFPELSRDTKLVWSLDVHRMSVGGALVAVSVWLNKLYARLKGEKD 741
Query: 240 LPQLATVVV 248
LPQLA+VVV
Sbjct: 742 LPQLASVVV 750
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 3/223 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L + + +L M E+GV ++ S+ +++AF + G + + EM P+
Sbjct: 260 LNDQAEMLLRAMLEAGVLPDTASYRHIVDAFARAGDLSRVAELFREMADTGHTPDPSAYL 319
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ + G E+ +++++ G P+ Y +LL +Y + R+D L EM T
Sbjct: 320 GLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRTA 379
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ T ++ F D ++ V +F + G M +L A GL E
Sbjct: 380 VPPDT--ATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHED 437
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
A VLD TK G+ P + LV ++ M+E AY A ++
Sbjct: 438 AREVLDYITKEGMVPTAKAYTGLVEALGHAAMYE-EAYVAFNM 479
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ + +L +++ G+ + ++ ++EA +EEA A+ M ++ P T
Sbjct: 432 GGLHEDAREVLDYITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIET 491
Query: 61 LEAVLSVYCFAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +V+ GL E++ F + S+GI + + L+ Y + + DDA EM
Sbjct: 492 YNSLANVFAKGGLFQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEM 551
Query: 120 HTNRIS 125
+R +
Sbjct: 552 RKSRFN 557
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 45/227 (19%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFE--------------------- 40
G E A+L +M G A + ++ +++ + + GRF+
Sbjct: 329 GATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRTAVPPDTATYN 388
Query: 41 -------------EAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87
E ++ + +M + +P+ T E VL GL ++++E I
Sbjct: 389 VLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVLDYITKE 448
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV-TGQMIKGEFDDESNWQ 146
G++P+ Y L+ + +++AY + M I ++ + T + F +Q
Sbjct: 449 GMVPTAKAYTGLVEALGHAAMYEEAYVAFNMM--TEIGSLPTIETYNSLANVFAKGGLFQ 506
Query: 147 MVEYVFDKL-NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
E +F ++ N G ++AL+EA +C G + LD+A K
Sbjct: 507 EAESIFSRMTNSAGIQKNKDSFDALIEA-YCQGAQ------LDDAVK 546
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 82/188 (43%), Gaps = 13/188 (6%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSVYCFAG--LVDESKEQFQ 82
F AV F + G ++ +++ + M++ C P+E V+ V G L+D+ E F
Sbjct: 100 FAAVYREFSRRGDWQRSVRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFH 159
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG---EF 139
++ + + + Y L+A YA++ ++A LLD+M ++ ++
Sbjct: 160 DLPADS--RTALSYTSLIAAYARNALHEEARALLDQMKAAGVAPTAATYNTVLAACARAT 217
Query: 140 DDESNWQMVEYVFDKLN---CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
D + M+ +F ++ + YN LL A L ++A +L + G+
Sbjct: 218 DPPVPFDMLLGLFAEMRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVL 277
Query: 197 PEL--FRH 202
P+ +RH
Sbjct: 278 PDTASYRH 285
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE + M +G+ + ++ V+ A QGG E+A + + K P +
Sbjct: 397 GGFFKEVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVLDYITKEGMVPTAKA 456
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ A + +E+ F + G LP++ Y L V+AK + +A + M
Sbjct: 457 YTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNSLANVFAKGGLFQEAESIFSRM 515
>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 779
Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 120/248 (48%), Positives = 162/248 (65%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGLY E + M + G++ + ++N++IEAF +GG F++AI+ +ME+ RC PN T
Sbjct: 438 GGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHT 497
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
EA++ VYC AGL DE+K QF +++ G LPSV YC+LL+V A+ NRWDDA +L+EM
Sbjct: 498 YEALMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSYCLLLSVCARRNRWDDASKVLEEML 557
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +I+ V G ++KGE DD +NWQ VEY FD L +G G +RFYNALLEALWCLG R
Sbjct: 558 EPNMPSIYGVVGGILKGEMDDGTNWQRVEYAFDGLKVDGVGSNLRFYNALLEALWCLGQR 617
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
ERA RV EA KRG+ E F + L+W++DVHRM G A T + VWL M
Sbjct: 618 ERACRVFAEARKRGVLAEAFSRSDLMWAIDVHRMSVGAAMTTLIVWLADMKAEIDNKSTF 677
Query: 241 PQLATVVV 248
P L ++V
Sbjct: 678 PPLLSIVT 685
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 4/207 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERT 60
G ++ +L+RM V N ++N VI A +GG +E + + +M P+ T
Sbjct: 123 GQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQPDIIT 182
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+LS GLV+E+ F+ + +G++P + Y L+ +Y +++R + LL EM
Sbjct: 183 YNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREME 242
Query: 121 TNRISNIHQVTGQMIKGE-FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ N V I E + ++ +F ++ G + ++ LLEA G
Sbjct: 243 --QAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGC 300
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ + + +RG P++ +N L+
Sbjct: 301 YDEVRLLFTDMKERGTEPDVNTYNTLI 327
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 15/192 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E + M+E+GV +S ++NA+++ + Q R E + EME+ P+
Sbjct: 194 GLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAY 253
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
++ Y AG + + F++++ +G P V+ + LL Y K +D+ L +M
Sbjct: 254 NILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKE 313
Query: 121 ------TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
N + + QV GQ G F ES + +D L+ G M Y LL +
Sbjct: 314 RGTEPDVNTYNTLIQVFGQ---GGFFQES----INLFWDLLDG-GVEPDMSTYAGLLYSC 365
Query: 175 WCLGLRERAARV 186
GL + A ++
Sbjct: 366 GKGGLHKAAKKI 377
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 5/146 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+K + I M +S V +D F +I A+ + EA A+ M++ C P+ T
Sbjct: 368 GGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLET 427
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ + GL E+ + + GI V Y L+ + + +DDA +M
Sbjct: 428 YNALIGAHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDME 487
Query: 121 TNRIS-NIHQVTGQM----IKGEFDD 141
R S N H M G FD+
Sbjct: 488 EARCSPNRHTYEALMGVYCTAGLFDE 513
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 85/184 (46%), Gaps = 1/184 (0%)
Query: 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ F+ + F Q +++A++ + M++ + C PNE ++ + G++D++ E F+
Sbjct: 39 NDFSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASELFE 98
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDE 142
++ + + +V + L+ Y ++ + + + LL M +++ +I
Sbjct: 99 DMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGG 158
Query: 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
W+ + +F ++ EG + YN LL A GL E A V + G+ P+ +
Sbjct: 159 LEWEGLLGLFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITY 218
Query: 203 NKLV 206
N LV
Sbjct: 219 NALV 222
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 12/196 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y E + + + M E G + +++N +I+ F QGG F+E+I + ++ +P+ T
Sbjct: 299 GCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTY 358
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L GL +K+ + + S + P+ + L+ Y + + +A + M
Sbjct: 359 AGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKE 418
Query: 122 N----RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ + + + G G E+ + + EG + YN+L+EA
Sbjct: 419 SGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMI-----DEGISADVSTYNSLIEAFGRG 473
Query: 178 GLRERA---ARVLDEA 190
GL + A +R ++EA
Sbjct: 474 GLFDDAIEFSRDMEEA 489
>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
Length = 773
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 149/249 (59%), Gaps = 7/249 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNER 59
GGLY E + L M+++G S N+V+EA+ + G +EA++ + E++ K + +ER
Sbjct: 446 GGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVDER 505
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T E +L VYC GL++E+KE+F IK + +P YC+LL++ + ++WD A LLDEM
Sbjct: 506 THETLLGVYCDMGLLEEAKEEFVIIKETSKVPGARVYCLLLSLCVRRSKWDYATQLLDEM 565
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+HQV +++G +D + +WQ+VEY FD L M FYNAL+E L
Sbjct: 566 IA--AGGLHQVVVGIVRGTYDADFSWQVVEYAFDGLKLRDMEESMDFYNALVELLVYCNQ 623
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239
+ RAARVL +A +RG FPE F + VWSV+VHRM G TA+S W N + E E
Sbjct: 624 KARAARVLADAMQRGAFPEAFIKTRRVWSVNVHRMSAGATVTALSTWFNDLQEC----EK 679
Query: 240 LPQLATVVV 248
LP + ++VV
Sbjct: 680 LPFMTSIVV 688
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 2/206 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++C I M E+ V N +F A+I A+ + G++E ++ M+K + +PN T
Sbjct: 96 GLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITY 155
Query: 62 EAVLSVYCFAGLVDES-KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
VL+ GL E F +++ GI P ++ Y LL+ + + A + M+
Sbjct: 156 NTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMN 215
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + VT + + F + VE + ++ EG + YN+L+EA G
Sbjct: 216 ESGVV-ADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNV 274
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
AA V + + G P++ ++ L+
Sbjct: 275 HGAAGVFKQMQRGGCAPDVETYSTLL 300
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 89/196 (45%), Gaps = 9/196 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ +++ S M + ++N++I+ F +GG F+E+I + +M P++ T
Sbjct: 307 GCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATY 366
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLLD 117
A+LSV GL E+ + Q + ++ PS+ L++ Y K + DA Y + +
Sbjct: 367 SALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIRE 426
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
++S + KG E+ + +N G+ + N+++EA +
Sbjct: 427 AGLDPQVSAYDALIQGYAKGGLYVEAGSTLY-----AMNKAGFQAPVSSVNSVMEAYSKV 481
Query: 178 GLRERAARVLDEATKR 193
GL + A E ++
Sbjct: 482 GLHDEALEFFSELQQK 497
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 94/239 (39%), Gaps = 18/239 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAF---RQGGRFEEAIKAYVEMEKVRCDPNE 58
GL ++ + M+ESGV ++ ++ ++++ F Q GR EE ++ EME P+
Sbjct: 202 GLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLR---EMEDEGNPPDI 258
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+++ Y AG V + F++++ G P V Y LL +Y ++ L +
Sbjct: 259 AGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSD 318
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M +I+ F + +Q +F + G Y+ALL G
Sbjct: 319 MKDLSTPPTVATYNSLIQ-VFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGG 377
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWS-----------VDVHRMWEGGAYTAISVW 226
L AA++ P L L+ S V +R+ E G +S +
Sbjct: 378 LTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAY 436
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 82/186 (44%), Gaps = 9/186 (4%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
F+ + F + A++ + M++ + C P E ++ + GL+++ E F+++
Sbjct: 49 FSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDM 108
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS----NIHQVTGQMIKGEFD 140
+ + +V + L+ Y ++ +++ + LL M ++ + V KG D
Sbjct: 109 PENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSKGGLD 168
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
W+ + +F ++ EG + YN LL A GL E+AA V + G+ +
Sbjct: 169 ----WEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAV 224
Query: 201 RHNKLV 206
+ LV
Sbjct: 225 TYKSLV 230
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 11/199 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++E + M +SGV + +++A++ +GG EA K + M P+
Sbjct: 341 GGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEA 400
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S Y + ++ + I+ +G+ P V Y L+ YAK + +A L M+
Sbjct: 401 SAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMN 460
Query: 121 T----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+S+++ V K DE+ +E+ + EG + R + LL
Sbjct: 461 KAGFQAPVSSVNSVMEAYSKVGLHDEA----LEFFSELQQKEGSEVDERTHETLLGVYCD 516
Query: 177 LGLRERAAR---VLDEATK 192
+GL E A ++ E +K
Sbjct: 517 MGLLEEAKEEFVIIKETSK 535
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/187 (19%), Positives = 77/187 (41%), Gaps = 1/187 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ +M G A + ++++ ++ + G FE+ + +M+ + P T +++ V+
Sbjct: 279 GVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVF 338
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G ES F ++ SG+ P Y LL+V + +A + M TN +
Sbjct: 339 GEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSL 398
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ + +I + + ++ + ++ G + Y+AL++ GL A L
Sbjct: 399 EASAGLISS-YGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLY 457
Query: 189 EATKRGL 195
K G
Sbjct: 458 AMNKAGF 464
>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
Length = 773
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 149/249 (59%), Gaps = 7/249 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNER 59
GGLY E + L M+++G S N+V+EA+ + G +EA++ + E++ K + +ER
Sbjct: 446 GGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVDER 505
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T E +L VYC GL++E+KE+F IK + +P YC+LL++ + ++WD A LLDEM
Sbjct: 506 THETLLGVYCDMGLLEEAKEEFVIIKETSKVPGARVYCLLLSLCVRRSKWDYATQLLDEM 565
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+HQV +++G +D + +WQ+VEY FD L M FYNAL+E L
Sbjct: 566 IA--AGGLHQVVVGIVRGTYDADFSWQVVEYAFDGLKLRDMEESMDFYNALVELLVYCNQ 623
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239
+ RAARVL +A +RG FPE F + VWSV+VHRM G TA+S W N + E E
Sbjct: 624 KARAARVLADAMQRGAFPEAFIKTRRVWSVNVHRMSAGATVTALSTWFNDLQEC----EK 679
Query: 240 LPQLATVVV 248
LP + ++VV
Sbjct: 680 LPFMTSIVV 688
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 95/206 (46%), Gaps = 2/206 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++C I M E+ V N +F A+I A+ + G++E ++ M+K R +PN T
Sbjct: 96 GLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITY 155
Query: 62 EAVLSVYCFAGLVDES-KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
VL+ GL E F +++ GI P ++ Y LL+ + + A + M+
Sbjct: 156 NTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMN 215
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + VT + + F + VE + ++ EG + YN+L+EA G
Sbjct: 216 ESGVV-ADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNV 274
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
AA V + + G P++ ++ L+
Sbjct: 275 HGAAGVFKQMQRGGCAPDVETYSTLL 300
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 9/196 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ +++ S M E ++N++I+ F +GG F+E+I + +M P++ T
Sbjct: 307 GCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATY 366
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLLD 117
A+LSV GL E+ + Q + ++ PS+ L++ Y K + DA Y + +
Sbjct: 367 SALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIRE 426
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
++S + KG E+ + +N G+ + N+++EA +
Sbjct: 427 AGLDPQVSAYDALIQGYAKGGLYVEAGSTLY-----AMNKAGFQAPVSSVNSVMEAYSKV 481
Query: 178 GLRERAARVLDEATKR 193
GL + A E ++
Sbjct: 482 GLHDEALEFFSELQQK 497
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 82/186 (44%), Gaps = 9/186 (4%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
F+ + F + A++ + M++ + C P E ++ + GL+++ E F+++
Sbjct: 49 FSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDM 108
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS----NIHQVTGQMIKGEFD 140
+ + +V + L+ Y ++ +++ + LL M R+ + V KG D
Sbjct: 109 PENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACSKGGLD 168
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
W+ + +F ++ EG + YN LL A GL E+AA V + G+ +
Sbjct: 169 ----WEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAV 224
Query: 201 RHNKLV 206
+ LV
Sbjct: 225 TYKSLV 230
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + G + + +N++IEA+ G A + +M++ C P+ T +L +Y
Sbjct: 245 LLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYG 304
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G ++ + F ++K P+V Y L+ V+ + + ++ L +M
Sbjct: 305 NQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDM 354
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 94/239 (39%), Gaps = 18/239 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAF---RQGGRFEEAIKAYVEMEKVRCDPNE 58
GL ++ + M+ESGV ++ ++ ++++ F Q GR EE ++ EME P+
Sbjct: 202 GLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLR---EMEDEGNSPDI 258
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+++ Y AG V + F++++ G P V Y LL +Y ++ L +
Sbjct: 259 AGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSD 318
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M +I+ F + +Q +F + G Y+ALL G
Sbjct: 319 MKELSTPPTVATYNSLIQ-VFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGG 377
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWS-----------VDVHRMWEGGAYTAISVW 226
L AA++ P L L+ S V +R+ E G +S +
Sbjct: 378 LTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAY 436
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 11/199 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++E + M +SGV + +++A++ +GG EA K + M P+
Sbjct: 341 GGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEA 400
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S Y + ++ + I+ +G+ P V Y L+ YAK + +A L M+
Sbjct: 401 SAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMN 460
Query: 121 T----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+S+++ V K DE+ +E+ + EG + R + LL
Sbjct: 461 KAGFQAPVSSVNSVMEAYSKVGLHDEA----LEFFSELQQKEGSEVDERTHETLLGVYCD 516
Query: 177 LGLRERAAR---VLDEATK 192
+GL E A ++ E +K
Sbjct: 517 MGLLEEAKEEFVIIKETSK 535
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/187 (19%), Positives = 78/187 (41%), Gaps = 1/187 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ +M G A + ++++ ++ + G FE+ + +M+++ P T +++ V+
Sbjct: 279 GVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVF 338
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G ES F ++ SG+ P Y LL+V + +A + M TN +
Sbjct: 339 GEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSL 398
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ + +I + + ++ + ++ G + Y+AL++ GL A L
Sbjct: 399 EASAGLISS-YGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLY 457
Query: 189 EATKRGL 195
K G
Sbjct: 458 AMNKAGF 464
>gi|414888269|tpg|DAA64283.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
Length = 616
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 91/109 (83%), Gaps = 1/109 (0%)
Query: 1 GGLYKECQAILSRMSE-SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GGL++E +AI SRMS +G+ ++ DSF+A+IEA+ QG R ++A+KAY+EM K R +P+ER
Sbjct: 508 GGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDER 567
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108
+LE VL+ YC AG++DESKEQF+E++SS +PSV+ YCM+L++YA+++R
Sbjct: 568 SLEGVLNAYCIAGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDR 616
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 11/243 (4%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L + + +L M E+GV+ ++ S+ +++AF G A + + EM +
Sbjct: 266 LADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYL 325
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ + G ++ +++++ G P+ Y +LL +Y + R+D L EM T
Sbjct: 326 GLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTA 385
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ T ++ F D ++ V +F + G M ++ A GL
Sbjct: 386 VPPDT--ATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGD 443
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQ 242
A VL+ T+ G+ P + LV ++ M+E AY A N M E+ LP
Sbjct: 444 AREVLEYMTREGMVPTADAYTGLVEALGHAAMYE-EAYVA----FNMMTEI----GSLPT 494
Query: 243 LAT 245
L T
Sbjct: 495 LET 497
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+ + + +L M+ G+ +D++ ++EA +EEA A+ M ++ P T
Sbjct: 438 GGLHGDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLET 497
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIK-SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+ Y GL E++ F + ++GI S + L+ Y + +R DDA EM
Sbjct: 498 YNALAFAYARGGLFQEAEAIFSRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEM 557
Query: 120 HTNRIS 125
+R +
Sbjct: 558 RKSRFN 563
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSVYCFAG--LVDESKEQFQ 82
F AV F + G ++ +++ + M++ C P+E V+ V G L+D+ E F
Sbjct: 106 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFH 165
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG---EF 139
++ + + + Y L+A YA++ ++A LLD+M ++ ++
Sbjct: 166 DLPAESR--TALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAACARAT 223
Query: 140 DDESNWQMVEYVFDKLNCEGYG---LGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
D + M+ +F ++ + + YN LL A L +++ +L + G+
Sbjct: 224 DPPVPFDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVS 283
Query: 197 PELFRHNKLV 206
P+ + +V
Sbjct: 284 PDTVSYRHIV 293
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+L +M G A + ++ +++ + + GRF+ + + EM + P+ T
Sbjct: 335 GATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREM-RTAVPPDTATY 393
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ V+ G E E F ++ +G+ P ++ ++A DA +L+ M
Sbjct: 394 NVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYM 451
>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g41170, mitochondrial; Flags: Precursor
gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 107/208 (51%), Gaps = 4/208 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ ++L M++ + + +FNA+I+AF + G+F +A + Y EM ++ PN T
Sbjct: 226 GRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTY 285
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C G VDE+++ F +++ G P V+ Y L+ + K + DDA + EM
Sbjct: 286 TSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQ 345
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ +I+G F + + VF + G +R YN LL L G +
Sbjct: 346 KGLTGNTITYTTLIQG-FGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVK 404
Query: 182 RAARVLDEATKR---GLFPELFRHNKLV 206
+A + ++ KR G+ P ++ +N L+
Sbjct: 405 KALMIFEDMQKREMDGVAPNIWTYNVLL 432
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 1/199 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ L +M + G + +F ++I F G R EEA+ +M ++ P+ ++
Sbjct: 127 SSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDS 186
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G V+ + F ++++ GI P V+ Y L+ S RW DA LL M T R
Sbjct: 187 LCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGM-TKRKIKP 245
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+T + F E + E +++++ + Y +L+ G + A ++
Sbjct: 246 DVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMF 305
Query: 188 DEATKRGLFPELFRHNKLV 206
+G FP++ + L+
Sbjct: 306 YLMETKGCFPDVVAYTSLI 324
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/189 (18%), Positives = 80/189 (42%), Gaps = 1/189 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV+ + + N ++ F Q + A +M K+ +P+ T ++++ +C ++E+
Sbjct: 102 GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEA 161
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
++ GI P V+ Y ++ K+ + A L D+M I + ++ G
Sbjct: 162 MSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ W+ + + + + +NAL++A G A + +E + + P
Sbjct: 222 -LCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAP 280
Query: 198 ELFRHNKLV 206
+F + L+
Sbjct: 281 NIFTYTSLI 289
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 89/207 (42%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E +++++M E G+ + + +I++ + G A+ + +ME P+
Sbjct: 155 GNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVM 214
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++++ C +G ++ + + I P V+ + L+ + K ++ DA L +EM
Sbjct: 215 YTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMI 274
Query: 121 TNRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
I+ NI T +I G F E +F + +G + Y +L+
Sbjct: 275 RMSIAPNIFTYT-SLING-FCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKK 332
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A ++ E +++GL + L+
Sbjct: 333 VDDAMKIFYEMSQKGLTGNTITYTTLI 359
>gi|42573413|ref|NP_974803.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122214363|sp|Q3E9F0.1|PP392_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18475
gi|110737103|dbj|BAF00503.1| hypothetical protein [Arabidopsis thaliana]
gi|332005185|gb|AED92568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 506
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 7/212 (3%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+S+ G++ + +FN +I F + G E A K M+K C+PN A+++ +C G
Sbjct: 259 ISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGK 318
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E+K+ F E+K +G+ + Y L+ + ++ D+A LL EM +R +T
Sbjct: 319 IQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASR-CRADTLTYN 377
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I E + + D+ EG L Y +L AL C G E+A + L ++R
Sbjct: 378 VILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSER 437
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
G++P + W+ V R+ E G YT I V
Sbjct: 438 GIWP-----HHATWNELVVRLCESG-YTEIGV 463
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 92/201 (45%), Gaps = 3/201 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERTLEAVLSV 67
AIL +M F ++ F + ++ ++ + ++ + R P+ + L++
Sbjct: 110 AILHQMKYETCRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAISTCLNL 169
Query: 68 YCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+G V+ S++ K + G+ P+ + +L+ + K+ + A+ +++EM + IS
Sbjct: 170 LIDSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISY 229
Query: 127 IHQVT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +T ++ F + + VE D ++ EG +N ++ G ERA +
Sbjct: 230 PNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKK 289
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+LD K G P ++ ++ L+
Sbjct: 290 ILDFMKKNGCNPNVYNYSALM 310
>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
[Oryza sativa Japonica Group]
Length = 571
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + G+A + ++N++I G+ EE +K EME + PNE T VL +C
Sbjct: 286 VFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFC 345
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G++ ++ + + + P V+ Y +L+ VY + + +DA + + M IS
Sbjct: 346 KKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVT 405
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G F +W+ + D++ +G + YN L+ AL C G +A ++LDE
Sbjct: 406 TYNCLITG-FSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDE 464
Query: 190 ATKRGLFPELFRHNKLV 206
++ GL P +N ++
Sbjct: 465 MSEVGLEPNHLTYNTII 481
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 9/214 (4%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
++ S NA++ R + A KA+ + R P+ T V+S C G + ++ +
Sbjct: 155 STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVA 214
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG---LLDEMHTNRISNIHQVTGQMIKGE 138
++IK+ G+ PSV Y L+ Y K + Y LL EM IS G +I G
Sbjct: 215 KDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING- 273
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+ SN VF+++ +G + YN+L+ L G E ++++E GL P
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSP- 332
Query: 199 LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
N++ + + + G + W++ M E
Sbjct: 333 ----NEITFGCVLKGFCKKGMMADANDWIDGMTE 362
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 1/184 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+E V + +N +I+ +R+ G+ E+A+ M K PN T +++ + +G
Sbjct: 360 MTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGD 419
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E+K GI V+ Y +L+ A LLDEM + H
Sbjct: 420 WRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT 479
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I+G F D+ N + + ++ + YN ++ +G + A +L+E +
Sbjct: 480 IIQG-FCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDK 538
Query: 194 GLFP 197
L P
Sbjct: 539 CLVP 542
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +L M E G+ + ++N +I A G +A+K EM +V +PN T
Sbjct: 418 GDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTY 477
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +C G + + E ++ +V+ Y + + + + + D+A LL+EM
Sbjct: 478 NTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEM 535
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +L MSE G+ N ++N +I+ F G + A + MEK R N T
Sbjct: 453 GEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTY 512
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
+ +C G +DE+ + E+ ++P+ + Y
Sbjct: 513 NVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITY 547
>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
Length = 578
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + G+A + ++N++I G+ EE +K EME + PNE T VL +C
Sbjct: 286 VFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFC 345
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G++ ++ + + + P V+ Y +L+ VY + + +DA + + M IS
Sbjct: 346 KKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVT 405
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G F +W+ + D++ +G + YN L+ AL C G +A ++LDE
Sbjct: 406 TYNCLITG-FSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDE 464
Query: 190 ATKRGLFPELFRHNKLV 206
++ GL P +N ++
Sbjct: 465 MSEVGLEPNHLTYNTII 481
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 9/214 (4%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
++ S NA++ R + A KA+ + R P+ T V+S C G + ++ +
Sbjct: 155 STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVA 214
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG---LLDEMHTNRISNIHQVTGQMIKGE 138
++IK+ G+ PSV Y L+ Y K + Y LL EM IS G +I G
Sbjct: 215 KDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING- 273
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+ SN VF+++ +G + YN+L+ L G E ++++E GL P
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSP- 332
Query: 199 LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
N++ + + + G + W++ M E
Sbjct: 333 ----NEITFGCVLKGFCKKGMMADANDWIDGMTE 362
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 1/184 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+E V + +N +I+ +R+ G+ E+A+ M K PN T +++ + +G
Sbjct: 360 MTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGD 419
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E+K GI V+ Y +L+ A LLDEM + H
Sbjct: 420 WRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT 479
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I+G F D+ N + + ++ + YN ++ +G + A +L+E +
Sbjct: 480 IIQG-FCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDK 538
Query: 194 GLFP 197
L P
Sbjct: 539 CLVP 542
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +L M E G+ + ++N +I A G +A+K EM +V +PN T
Sbjct: 418 GDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTY 477
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +C G + + E ++ +V+ Y + + + + + D+A LL+EM
Sbjct: 478 NTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEM 535
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +L MSE G+ N ++N +I+ F G + A + MEK R N T
Sbjct: 453 GEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTY 512
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
+ +C G +DE+ + E+ ++P+ + Y
Sbjct: 513 NVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITY 547
>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
Length = 578
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + G+A + ++N++I G+ EE +K EME + PNE T VL +C
Sbjct: 286 VFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFC 345
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G++ ++ + + + P V+ Y +L+ Y + + +DA + + M IS
Sbjct: 346 KKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVT 405
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G F +W+ + D++ +G + YN L+ AL C G +A ++LDE
Sbjct: 406 TYNCLITG-FSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDE 464
Query: 190 ATKRGLFPELFRHNKLV 206
++ GL P +N ++
Sbjct: 465 MSEVGLEPNHLTYNTII 481
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 9/214 (4%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
++ S NA++ R + A KA+ + R P+ T V+S C G + ++ +
Sbjct: 155 STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVA 214
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG---LLDEMHTNRISNIHQVTGQMIKGE 138
++IK+ G+ PSV Y L+ Y K + Y LL EM IS G +I G
Sbjct: 215 KDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING- 273
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+ SN VF+++ +G + YN+L+ L G E ++++E GL P
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSP- 332
Query: 199 LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
N++ + + + G + W++ M E
Sbjct: 333 ----NEITFGCVLKGFCKKGMMADANDWIDGMTE 362
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +L M E G+ + ++N +I A G +A+K EM +V +PN T
Sbjct: 418 GDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTY 477
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +C G + + E ++ +V+ Y + + + + + D+A LL+EM
Sbjct: 478 NTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEM 535
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 1/184 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+E V + + +I+ +R+ G+ E+A+ M K PN T +++ + +G
Sbjct: 360 MTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGD 419
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E+K GI V+ Y +L+ A LLDEM + H
Sbjct: 420 WRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT 479
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I+G F D+ N + + ++ + YN ++ +G + A +L+E +
Sbjct: 480 IIQG-FCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDK 538
Query: 194 GLFP 197
L P
Sbjct: 539 CLVP 542
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +L MSE G+ N ++N +I+ F G + A + MEK R N T
Sbjct: 453 GEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTY 512
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
+ +C G +DE+ + E+ ++P+ + Y
Sbjct: 513 NVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITY 547
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 20/200 (10%)
Query: 18 GVARNSDSFNAVIEAF-RQGG-----RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
G+A + ++N++I+ + ++GG + +K EM + P T +++ YC
Sbjct: 221 GLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLK---EMVEAGISPTAVTFGVLINGYCKN 277
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISN 126
+ F+E+K GI SV+ Y L++ + ++ L++EM N I+
Sbjct: 278 SNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITF 337
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ G KG D ++W D + + Y L++ LG E A V
Sbjct: 338 GCVLKGFCKKGMMADANDW------IDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAV 391
Query: 187 LDEATKRGLFPELFRHNKLV 206
+ K+G+ P + +N L+
Sbjct: 392 KEAMAKKGISPNVTTYNCLI 411
>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
Length = 784
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 22/241 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
LYKE + M SG + +FN++++ + + R +EAI+ EME+V C P+ T
Sbjct: 257 ALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTY 316
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+++S Y GL++++ QE++ GI P V+ Y L++ ++ + D A DEM
Sbjct: 317 NSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVR 376
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N + + ++G+F + + VFD+L G+ + +N LL
Sbjct: 377 NGCKPNLCTYNALIKMHGVRGKFPE------MMAVFDELRSAGFVPDIVTWNTLLAVFGQ 430
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAISV 225
GL + V E K G PE + L+ S RM E G Y +S
Sbjct: 431 NGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVST 490
Query: 226 W 226
+
Sbjct: 491 Y 491
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ I RM E+G+ + ++NAV+ A +GGR+E+A K + EME+ C P+E +
Sbjct: 467 GLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSY 526
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L Y A +D+ K +I S I P L+ V +K N +A E+
Sbjct: 527 SSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQ 586
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R S V M+ + + VE + + L YN+L+ LG E
Sbjct: 587 KRCSLDINVLNAMV-SIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCE 645
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
+ +L E G+ P+ + +N ++++
Sbjct: 646 KCENILTEIKSSGVRPDRYSYNTVIYA 672
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 3/204 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+KE +++ M E GVA + ++N +I R+ ++EA + + EM+ +P++ T +
Sbjct: 224 WKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNS 283
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L VY A DE+ E QE++ G PSV+ Y L++ Y K + A L EM
Sbjct: 284 LLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKG 343
Query: 124 ISNIHQVTGQMIKG-EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
I +I G + + + +VEY D++ G + YNAL++ G
Sbjct: 344 IKPDVVTYTTLISGLDRAGKIDAAIVEY--DEMVRNGCKPNLCTYNALIKMHGVRGKFPE 401
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
V DE G P++ N L+
Sbjct: 402 MMAVFDELRSAGFVPDIVTWNTLL 425
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 98/212 (46%), Gaps = 11/212 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ A+ M G+ + ++ +I + G+ + AI Y EM + C PN T
Sbjct: 327 GLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTY 386
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
A++ ++ G E F E++S+G +P ++ + LLAV+ ++ + G+ EM
Sbjct: 387 NALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKK 446
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
R + + ++ G FD + ++ ++ G + YNA+L AL
Sbjct: 447 AGYIPERDTYVSLISSYSRCGLFD------LAMQIYKRMMEAGIYPDVSTYNAVLSALAR 500
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
G E+A ++ E +R P+ + ++ L+ +
Sbjct: 501 GGRWEQAEKLFAEMEERDCKPDEYSYSSLLHA 532
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 66/135 (48%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ ++ + ILS M ES + ++ ++N+++ + + G E+ E++ P+ +
Sbjct: 608 MVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYN 667
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ Y G + E+ F E+K SG+ P V+ Y + + Y ++ +++A L+ M T
Sbjct: 668 TVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQ 727
Query: 123 RISNIHQVTGQMIKG 137
+ +++G
Sbjct: 728 GCKPNERTYNSIVEG 742
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 6/192 (3%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV + I + GR EA + P+ A++S + AG ++
Sbjct: 136 GVLHHPRVLATAIRVMARAGRLAEA----SALLDAAPGPDAGAYTALVSAFSRAGRFRDA 191
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAK-SNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136
F+ + SG+ P+++ Y ++L VY+K + W + L+ M + ++ +I
Sbjct: 192 VAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLIS 251
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
+ ++ VFD++ G+ +N+LL+ + A V+ E + G
Sbjct: 252 C-CRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCP 310
Query: 197 PELFRHNKLVWS 208
P + +N L+ S
Sbjct: 311 PSVVTYNSLISS 322
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + S M SG+ + ++N ++++ FEEAI+ M C PNERT
Sbjct: 677 GQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTY 736
Query: 62 EAVLSVYCFAGLVDESK 78
+++ YC G + ++K
Sbjct: 737 NSIVEGYCRNGKLTDAK 753
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 55/108 (50%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++C+ IL+ + SGV + S+N VI A+ + G+ +EA + + EM+ P+ T
Sbjct: 645 EKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIF 704
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+ Y + +E+ E + + + G P+ Y ++ Y ++ + DA
Sbjct: 705 VKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDA 752
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 11/171 (6%)
Query: 41 EAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
EA KA++E+ + RC + L A++S+Y +V + ++ +K S I S Y L+
Sbjct: 576 EAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLM 635
Query: 101 AVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI-----KGEFDDESNWQMVEYVFDKL 155
+Y++ + +L E+ ++ + +I KG+ + S +F ++
Sbjct: 636 HMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASR------LFSEM 689
Query: 156 NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
C G + YN +++ + E A ++ +G P +N +V
Sbjct: 690 KCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIV 740
>gi|297812025|ref|XP_002873896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319733|gb|EFH50155.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 6/205 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+S+ G++ + FN +I F + G E A M+K C+PN A+++ +C G
Sbjct: 260 ISKRGISPDPVIFNVMINGFCRSGEVERAKMILDFMKKNGCNPNVYNYSALMNGFCKEGK 319
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E+K+ F E+K +G+ + Y L+ ++ D+A LL EM +R
Sbjct: 320 IQEAKQVFDEVKKTGLKLDTVGYTTLMNCLCRNGEIDEAMKLLGEMKASRCRADALTYNV 379
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+++G E + + D+ CEG L Y +L AL C G E+A + L +KR
Sbjct: 380 ILRG-LSSEGRSEEALQMLDQWGCEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSKR 438
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGG 218
G++P + W+ V R+ E G
Sbjct: 439 GIWP-----HHATWNELVVRLCESG 458
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 7/183 (3%)
Query: 19 VARNSDSFNAV---IEAFRQGGRFEEAIKAYV-EMEKVRCDPNERTLEAVLSVYCFAGLV 74
+AR S NA+ + G + A K + + PN ++ +C G +
Sbjct: 154 IARVKPSLNAISTCLNLLIDSGEVDLARKLLLYAKHNLALQPNTCIFNILVKHHCKNGDI 213
Query: 75 DESKEQFQEIKSSGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR-ISNIHQVTG 132
D + +E+K SGI P+ + Y L+ +R +A L ++M + R IS +
Sbjct: 214 DSAFRVVEEMKRSGISYPNSITYSTLMDCLFAQSRSKEAVELFEDMISKRGISPDPVIFN 273
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
MI G F + + + D + G + Y+AL+ G + A +V DE K
Sbjct: 274 VMING-FCRSGEVERAKMILDFMKKNGCNPNVYNYSALMNGFCKEGKIQEAKQVFDEVKK 332
Query: 193 RGL 195
GL
Sbjct: 333 TGL 335
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 53 RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAKSNRWDD 111
R P+ + L++ +G VD +++ K + + P+ + +L+ + K+ D
Sbjct: 156 RVKPSLNAISTCLNLLIDSGEVDLARKLLLYAKHNLALQPNTCIFNILVKHHCKNGDIDS 215
Query: 112 AYGLLDEMHTNRISNIHQVT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
A+ +++EM + IS + +T ++ F + + VE D ++ G +N +
Sbjct: 216 AFRVVEEMKRSGISYPNSITYSTLMDCLFAQSRSKEAVELFEDMISKRGISPDPVIFNVM 275
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ G ERA +LD K G P ++ ++ L+
Sbjct: 276 INGFCRSGEVERAKMILDFMKKNGCNPNVYNYSALM 311
>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 577
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 5/199 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M E + N +FNA+I+AF + G+ EA K Y EM K DP+ T ++++ +C
Sbjct: 317 LLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 376
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+DE+K F+ + S P+V+ Y L+ + K+ R D+ L EM +
Sbjct: 377 MHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTV 436
Query: 130 VTGQMIKGEFD--DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+I G F D N QM VF ++ +G + YN LL+ L G E+A V
Sbjct: 437 TYTTLIHGFFQARDCDNAQM---VFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 493
Query: 188 DEATKRGLFPELFRHNKLV 206
+ + + P ++ +N ++
Sbjct: 494 EYLQRSKMEPTIYTYNIMI 512
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM + G N ++ V+ + G + A +ME + + N V+
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVI 267
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C D++ F E+++ G+ P+V+ Y L++ RW DA LL +M +I
Sbjct: 268 DSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKI- 326
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E E ++D++ + Y++L+ +C+ R + A
Sbjct: 327 NPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING-FCMHDRLDEAK 385
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ + + FP + +N L+
Sbjct: 386 HMFELMISKDCFPNVVTYNTLI 407
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 98/237 (41%), Gaps = 10/237 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ +M E G ++ +F +I + EA+ M + C PN T V++
Sbjct: 176 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 235
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G +D + +++++ I +V+ Y ++ K DDA L EM N+ +
Sbjct: 236 CKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME-NKGVRPN 294
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+T + + W + + + +NAL++A G A ++ D
Sbjct: 295 VITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYD 354
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLAT 245
E KR + P++F ++ L+ +H + + M+E+ + + P + T
Sbjct: 355 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH---------MFELMISKDCFPNVVT 402
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 7/180 (3%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N ++N +I F + R +E ++ + EM + N T ++ + A D ++ F
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 458
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+++ S G+ P++M Y LL K+ + + A + + + +++ MI+G
Sbjct: 459 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 518
Query: 142 ---ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
E W + F L+ +G + YN ++ GL+E A + + + G P+
Sbjct: 519 GKVEDGWDL----FCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPD 574
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 56/128 (43%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ MS+ G+ N+ ++ +I F Q + A + +M PN T +L C
Sbjct: 422 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC 481
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++++ F+ ++ S + P++ Y +++ K+ + +D + L + +
Sbjct: 482 KNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVI 541
Query: 130 VTGQMIKG 137
+ MI G
Sbjct: 542 IYNTMISG 549
>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
Length = 384
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 108/216 (50%), Gaps = 1/216 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++C+ + M + G + NS ++NA+I+ + + G F+EA++ Y EM+ V C + T
Sbjct: 101 AGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHT 160
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++Y GL+++ + E+ + G+ P + Y LL VYAK + + A+ +L EM
Sbjct: 161 YNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMT 220
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
M+ ++S + + +F+ L +G + Y+A+L GL
Sbjct: 221 EAGYRPNIWTYNIMLSSARKEQSVAEATQ-LFENLKSKGVVPNIVTYSAMLSLYGRHGLY 279
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
AA++ DE + G P + ++ L+ S H M++
Sbjct: 280 TEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQ 315
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + +L M GV + ++N +++ + + F +A + EM + PN T
Sbjct: 172 GLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTY 231
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
+LS V E+ + F+ +KS G++P+++ Y +L++Y + + +A L DEM
Sbjct: 232 NIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIE 291
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I I +G + + +Q F + G + Y AL++A G
Sbjct: 292 AGCIPCIIAYSGLI--ESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRC 349
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A + E TK G P+ + LV
Sbjct: 350 REAELLYFEMTKEGFVPDGITYGILV 375
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 3/200 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M ESG + +N ++ GR E A K +M++ + N T ++ Y
Sbjct: 40 LLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYA 99
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-TNRISNIH 128
AG + + ++ FQE+K G P+ Y L+ Y + + +A L DEM ++H
Sbjct: 100 NAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVH 159
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
T + + + +E + D+++ +G YN LL+ +A +L
Sbjct: 160 --TYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILR 217
Query: 189 EATKRGLFPELFRHNKLVWS 208
E T+ G P ++ +N ++ S
Sbjct: 218 EMTEAGYRPNIWTYNIMLSS 237
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY E + M E+G +++ +IE++ G ++EA+ + +M K P+ +
Sbjct: 277 GLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIY 336
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108
A++ Y AG E++ + E+ G +P + Y +L+ +A + R
Sbjct: 337 TALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANAGR 383
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 89/199 (44%), Gaps = 2/199 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
++ RM + G ++ +I + RQ + + A++ M++ P+E +++
Sbjct: 3 SLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNG 62
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+G ++ +++ ++K + +++ Y L+ YA + R D L EM S
Sbjct: 63 LVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGESPN 122
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+I+G + + ++ ++D+++ G + YN + GL E R+L
Sbjct: 123 SWTYNALIQG-YGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLL 181
Query: 188 DEATKRGLFPELFRHNKLV 206
DE +G+ P+ +N L+
Sbjct: 182 DEMDTKGVPPDQVTYNTLL 200
>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
Length = 384
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 108/215 (50%), Gaps = 1/215 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++C+ + M + G + NS ++NA+I+ + + G F+EA++ Y EM+ V C + T
Sbjct: 102 GRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTY 161
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++Y GL+++ + E+ + G+ P + Y LL VYAK + + A+ +L EM
Sbjct: 162 NIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTE 221
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
M+ ++S + + +F+ L +G + Y+A+L GL
Sbjct: 222 AGYRPNIWTYNIMLSSARKEQSVAEATQ-LFENLKSKGVVPNIVTYSAMLSLYGRHGLYT 280
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
AA++ DE + G P + ++ L+ S H M++
Sbjct: 281 EAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQ 315
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + +L M GV + ++N +++ + + F +A + EM + PN T
Sbjct: 172 GLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTY 231
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
+LS V E+ + F+ +KS G++P+++ Y +L++Y + + +A L DEM
Sbjct: 232 NIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIE 291
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I I +G + + +Q F + G + Y AL++A G
Sbjct: 292 AGCIPCIIAYSGLI--ESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKAGRC 349
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A + E TK G P+ + LV
Sbjct: 350 REAELLYFEMTKEGFVPDGITYGILV 375
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 3/200 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M ESG + +N ++ GR E A K +M++ + N T ++ Y
Sbjct: 40 LLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYA 99
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-TNRISNIH 128
G + + ++ FQE+K G P+ Y L+ Y + + +A L DEM ++H
Sbjct: 100 NTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVH 159
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
T + + + +E + D+++ +G YN LL+ +A +L
Sbjct: 160 --TYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILR 217
Query: 189 EATKRGLFPELFRHNKLVWS 208
E T+ G P ++ +N ++ S
Sbjct: 218 EMTEAGYRPNIWTYNIMLSS 237
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY E + M E+G +++ +IE++ G ++EA+ + +M K P+ +
Sbjct: 277 GLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIY 336
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108
A++ Y AG E++ + E+ G +P + Y +L+ +A + R
Sbjct: 337 TALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANAGR 383
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 89/199 (44%), Gaps = 2/199 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
++ RM + G ++ +I + RQ + + A++ M++ P+E +++
Sbjct: 3 SLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKESGKKPDEILYNCLVNG 62
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+G ++ +++ ++K + +++ Y L+ YA + R D L EM S
Sbjct: 63 LVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGESPN 122
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+I+G + + ++ ++D+++ G + YN + GL E R+L
Sbjct: 123 SWTYNALIQG-YGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLL 181
Query: 188 DEATKRGLFPELFRHNKLV 206
DE +G+ P+ +N L+
Sbjct: 182 DEMDTKGVPPDQVTYNTLL 200
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +F+A+I+AF + G+ EA K Y EM K DP+ T
Sbjct: 304 GRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+K F+ + S P+V+ Y L+ + K+ R ++ L EM
Sbjct: 364 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQ 423
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F + M + +F K+ +G + Y+ LL+ L G E
Sbjct: 424 RGLVGNTVTYNTLIQGLF-QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 482
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V + K + P+++ +N ++
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMI 507
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 105/244 (43%), Gaps = 24/244 (9%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ +M E G ++ +FN +I + EA+ +M + C P+ T AV++
Sbjct: 171 ALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGL 230
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G +D + ++++ I V+ Y ++ K DDA+ L ++M T I
Sbjct: 231 CKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDV 290
Query: 129 QVTGQMIK-----GEFDDESNW--QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+I G + D S M+E K+N + ++AL++A G
Sbjct: 291 FTYNSLISCLCNYGRWSDASRLLSNMIER---KINPN-----VVTFSALIDAFVKEGKLV 342
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLP 241
A ++ DE KR + P++F ++ L+ +H + + M+E+ + + P
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH---------MFELMISKDCFP 393
Query: 242 QLAT 245
+ T
Sbjct: 394 NVVT 397
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 90/202 (44%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ +M + G + ++ AV+ + G + A+ +MEK + + + ++
Sbjct: 203 EAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTII 262
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C +D++ F ++++ GI P V Y L++ RW DA LL M +I
Sbjct: 263 DGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKI- 321
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E E ++D++ + Y++L+ +C+ R + A
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING-FCMHDRLDEAK 380
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ + + FP + +N L+
Sbjct: 381 HMFELMISKDCFPNVVTYNTLI 402
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +IE + G+ E+ + + PN ++S +C GL +E+ F+E+
Sbjct: 502 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
K G LP CY L+ + + L+ EM +
Sbjct: 562 KEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRS 598
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 82/185 (44%), Gaps = 1/185 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + MS+ G+ N+ ++N +I+ Q G + A K + +M P+ T +
Sbjct: 412 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L C G ++++ F+ ++ S + P + Y +++ K+ + +D + L + +
Sbjct: 472 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 531
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ MI G F + + + +F ++ +G YN L+ A G + +A
Sbjct: 532 KPNVIIYTTMISG-FCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASA 590
Query: 185 RVLDE 189
++ E
Sbjct: 591 ELIKE 595
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 101/207 (48%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ Q + + M G+ ++ +FN +I+A +GG+ E A M PN T
Sbjct: 319 GGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVT 378
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y G +E+ + ++K SG+ P + Y L+ +YAK R+DDA +M
Sbjct: 379 YSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDME 438
Query: 121 TNRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
R+ VT + + + ++ +FDK+ EG + Y+AL+++ G+
Sbjct: 439 --RVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGM 496
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ + V E + GL P++ ++ L+
Sbjct: 497 HQDVSNVFTEFKRAGLKPDVVLYSSLI 523
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 126/265 (47%), Gaps = 33/265 (12%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFE--EAIKAYV----------EM 49
GL ++ +L M+++G+ N ++N++I+A+ + G+ + EA+KA + M
Sbjct: 530 GLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGERSM 589
Query: 50 EKVRCDP----NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
E VR P N VL+ F E++ G+ P+V+ + +L ++
Sbjct: 590 EVVRKPPPSQQNASDHTGVLAAVSV----------FHEMQQFGLKPNVVTFSAILNACSR 639
Query: 106 SNRWDDAYGLLDEMHTNRISN--IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG 163
+A LL++M R + ++ + ++ G E W + +FD+++ Y G
Sbjct: 640 CASLQEASVLLEQM---RFFDGWVYGIAHGLLMGL--REQVWVEAQRLFDEISRMDYATG 694
Query: 164 MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAI 223
FYNAL + LW G R+ A V+ A +R ++ + ++ + +D+H M G A +
Sbjct: 695 AAFYNALTDVLWHFGQRQGAQEVVVAAKRRQVWENAWWRSEQQFCLDLHLMSVGAAQAML 754
Query: 224 SVWLNKMYEMFMMGEDLPQLATVVV 248
VWL + + G LP++ +++
Sbjct: 755 HVWLLDLRALVWDGHALPRVLSILT 779
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 93/203 (45%), Gaps = 12/203 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +R ++G N +++A++ A+ + GR EA+K + M+K C PN T ++ C
Sbjct: 222 VFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDA-C 280
Query: 70 FAGLVD--ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-- 125
G VD ++ + F E++ G+ P + + L+AV ++ W+D+ + EM I
Sbjct: 281 GKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQD 340
Query: 126 --NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ + + KG ++ + + + + Y+ +++ LG E A
Sbjct: 341 IFTFNTLIDAVCKG-----GQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEA 395
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+ + + G+ P+ +N L+
Sbjct: 396 ISLYHDMKESGVRPDRVSYNTLI 418
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G YK+ + +M G+ N +++A+I+++ + G ++ + E ++ P+
Sbjct: 460 GKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLY 519
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C GLV+++ QE+ +GI P+++ Y L+ Y + + D + M
Sbjct: 520 SSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANM-P 578
Query: 122 NRISNIHQVTGQMIKGEFDDESN 144
N + I + + ++++ + N
Sbjct: 579 NSVQKIGERSMEVVRKPPPSQQN 601
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 35/153 (22%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV--RCD---- 55
G ++E ++ M ESGV + S+N +I+ + + GRF++A+ A +ME+V + D
Sbjct: 390 GCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTY 449
Query: 56 -----------------------------PNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
PN T A++ Y AG+ + F E K
Sbjct: 450 NALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKR 509
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+G+ P V+ Y L+ K +DA LL EM
Sbjct: 510 AGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEM 542
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 35/181 (19%)
Query: 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG 88
+I + G+ E A+ + +K N A++S Y +G E+ + FQ +K +G
Sbjct: 206 MISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAG 265
Query: 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMV 148
P+++ Y ++ K G +K D
Sbjct: 266 CKPNLITYNTIIDACGKG-------------------------GVDLKQALD-------- 292
Query: 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
+FD++ EG +N+L+ GL E + RV E +RG+ ++F N L+ +
Sbjct: 293 --IFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDA 350
Query: 209 V 209
V
Sbjct: 351 V 351
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +F+A+I+AF + G+ EA K Y EM K DP+ T
Sbjct: 304 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+K F+ + S P+V+ Y L+ + K+ R ++ L EM
Sbjct: 364 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQ 423
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F + M + +F K+ +G + Y+ LL+ L G E
Sbjct: 424 RGLVGNTVTYNTLIQGLF-QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 482
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V + K + P+++ +N ++
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMI 507
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM G + ++ V+ + G + A+ +MEK + + + ++
Sbjct: 203 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTII 262
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C V+++ F E+ + GI P+V+ Y L+ RW DA LL +M +I
Sbjct: 263 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI- 321
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E E ++D++ + Y++L+ +C+ R + A
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING-FCMHDRLDEAK 380
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ + + FP + +N L+
Sbjct: 381 HMFELMISKDCFPNVVTYNTLI 402
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/250 (20%), Positives = 99/250 (39%), Gaps = 20/250 (8%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E A++ +M N+ +FN +I + EA+ M C P+ T
Sbjct: 163 GKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFT 222
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ C G +D + ++++ I V+ Y ++ +DA L EM
Sbjct: 223 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMD 282
Query: 121 TNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
I +I+ G + D S + + + K+N + ++AL++A
Sbjct: 283 NKGIRPNVVTYNSLIRCLCNYGRWSDASRL-LSDMIERKINP-----NVVTFSALIDAFV 336
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFM 235
G A ++ DE KR + P++F ++ L+ +H + + M+E+ +
Sbjct: 337 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH---------MFELMI 387
Query: 236 MGEDLPQLAT 245
+ P + T
Sbjct: 388 SKDCFPNVVT 397
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 83/201 (41%), Gaps = 7/201 (3%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L +M + G + + ++++ + G R EA+ +M + PN T ++
Sbjct: 136 AVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGL 195
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
E+ + + G P + Y ++ K D A LL +M +I
Sbjct: 196 FLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADV 255
Query: 129 QVTGQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +I D N++ V +F +++ +G + YN+L+ L G A+R
Sbjct: 256 VIYTTII----DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 311
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+L + +R + P + + L+
Sbjct: 312 LLSDMIERKINPNVVTFSALI 332
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 82/185 (44%), Gaps = 1/185 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + MS+ G+ N+ ++N +I+ Q G + A K + +M P+ T +
Sbjct: 412 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L C G ++++ F+ ++ S + P + Y +++ K+ + +D + L + +
Sbjct: 472 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 531
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ MI G F + + + +F ++ +G YN L+ A G + +A
Sbjct: 532 KPNVIIYTTMISG-FCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 590
Query: 185 RVLDE 189
++ E
Sbjct: 591 ELIKE 595
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +IE + G+ E+ + + PN ++S +C GL +E+ F+E+
Sbjct: 502 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
K G LP+ Y L+ + + L+ EM +
Sbjct: 562 KEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS 598
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +F+A+I+AF + G+ EA K Y EM K DP+ T
Sbjct: 288 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 347
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+K F+ + S P+V+ Y L+ + K+ R ++ L EM
Sbjct: 348 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQ 407
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F + M + +F K+ +G + Y+ LL+ L G E
Sbjct: 408 RGLVGNTVTYNTLIQGLF-QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 466
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V + K + P+++ +N ++
Sbjct: 467 KALVVFEYLQKSKMEPDIYTYNIMI 491
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM G + ++ V+ + G + A+ +MEK + + + ++
Sbjct: 187 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTII 246
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C V+++ F E+ + GI P+V+ Y L+ RW DA LL +M +I
Sbjct: 247 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI- 305
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E E ++D++ + Y++L+ +C+ R + A
Sbjct: 306 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING-FCMHDRLDEAK 364
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ + + FP + +N L+
Sbjct: 365 HMFELMISKDCFPNVVTYNTLI 386
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/250 (20%), Positives = 99/250 (39%), Gaps = 20/250 (8%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E A++ +M N+ +FN +I + EA+ M C P+ T
Sbjct: 147 GKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFT 206
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ C G +D + ++++ I V+ Y ++ +DA L EM
Sbjct: 207 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMD 266
Query: 121 TNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
I +I+ G + D S + + + K+N + ++AL++A
Sbjct: 267 NKGIRPNVVTYNSLIRCLCNYGRWSDASRL-LSDMIERKINP-----NVVTFSALIDAFV 320
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFM 235
G A ++ DE KR + P++F ++ L+ +H + + M+E+ +
Sbjct: 321 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH---------MFELMI 371
Query: 236 MGEDLPQLAT 245
+ P + T
Sbjct: 372 SKDCFPNVVT 381
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 83/201 (41%), Gaps = 7/201 (3%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L +M + G + + ++++ + G R EA+ +M + PN T ++
Sbjct: 120 AVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGL 179
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
E+ + + G P + Y ++ K D A LL +M +I
Sbjct: 180 FLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADV 239
Query: 129 QVTGQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +I D N++ V +F +++ +G + YN+L+ L G A+R
Sbjct: 240 VIYTTII----DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 295
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+L + +R + P + + L+
Sbjct: 296 LLSDMIERKINPNVVTFSALI 316
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 82/185 (44%), Gaps = 1/185 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + MS+ G+ N+ ++N +I+ Q G + A K + +M P+ T +
Sbjct: 396 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 455
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L C G ++++ F+ ++ S + P + Y +++ K+ + +D + L + +
Sbjct: 456 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 515
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ MI G F + + + +F ++ +G YN L+ A G + +A
Sbjct: 516 KPNVIIYTTMISG-FCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 574
Query: 185 RVLDE 189
++ E
Sbjct: 575 ELIKE 579
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +IE + G+ E+ + + PN ++S +C GL +E+ F+E+
Sbjct: 486 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 545
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
K G LP+ Y L+ + + L+ EM +
Sbjct: 546 KEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS 582
>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 793
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 104/242 (42%), Gaps = 22/242 (9%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LYKE + M +G + +FN++++ + + +EAI EME C P+ T
Sbjct: 262 GALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVT 321
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++S Y GL+ E+ E +E++ GI P V+ Y L++ ++ + D A G DEM
Sbjct: 322 YNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEML 381
Query: 121 TNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
N +IK G+F + + VFD L G+ + +N LL
Sbjct: 382 RNGCKPNLCTYNALIKLHGVRGKFPE------MMAVFDDLRSAGFVPDVVTWNTLLAVFG 435
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAIS 224
GL + V E K G PE + L+ S RM E G Y IS
Sbjct: 436 QNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDIS 495
Query: 225 VW 226
+
Sbjct: 496 TY 497
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + I RM E+G+ + ++NAV+ A +GGR+E+A K + EME + C P+E +
Sbjct: 473 GLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSY 532
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L Y A +D+ K ++I + I L+ V +K N + E+
Sbjct: 533 SSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGR 592
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R S V M+ + + VE + + L YN+L+ LG E
Sbjct: 593 RRCSLDINVLNAMV-SVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCE 651
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
+ +L E G P+ + +N ++++
Sbjct: 652 KCENILTEIKSSGARPDRYSYNTMIYA 678
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E A+ + +G + ++N ++ F Q G E + EM+K P T
Sbjct: 403 GKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTY 462
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++S Y GL D+S E ++ + +GI P + Y +L+ A+ RW+ A L EM
Sbjct: 463 VSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEM 520
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 62/119 (52%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ K+ + ILS M S + ++ ++N+++ + + G E+ E++ P+ +
Sbjct: 614 MVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYN 673
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G + E+ F E+KSSG++P ++ Y + + Y ++ +++A L+ M T
Sbjct: 674 TMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVT 732
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Query: 55 DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK-SNRWDDAY 113
+P+ A++S + A ++ F+ + ++GI P+++ Y ++L VY+K + W D
Sbjct: 175 EPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVV 234
Query: 114 GLLDEMHTNRISNIHQVTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNA 169
L+D M + I +I +G ++ VFD++ G+ +N+
Sbjct: 235 ALVDSMKNDGIPLDRYTYNTLISCCRRGAL-----YKEAAKVFDEMRAAGFEPDKVTFNS 289
Query: 170 LLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
LL+ + + A VL E G P + +N L+ S
Sbjct: 290 LLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISS 328
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + S M SG+ + ++N ++++ FEEAI M C PNERT
Sbjct: 683 GQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTY 742
Query: 62 EAVLSVYCFAGLVDESK 78
++L YC G + ++K
Sbjct: 743 NSILQEYCRHGKIADAK 759
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 55/115 (47%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++C+ IL+ + SG + S+N +I A+ + G+ +EA + + EM+ P+ T
Sbjct: 651 EKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIF 710
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ Y + +E+ + + + + G P+ Y +L Y + + DA L +
Sbjct: 711 VKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNL 765
>gi|125558386|gb|EAZ03922.1| hypothetical protein OsI_26055 [Oryza sativa Indica Group]
Length = 658
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 1/197 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE A+ RM +SG+ +S ++ ++ + G+ +EA+ + ++ N
Sbjct: 380 GREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFY 439
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ + AG+VD+SKE F+E+ + G +P CY +L+ AKS R DDA L M
Sbjct: 440 TSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMED 499
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G F + N + +++ +D + +G + L L G
Sbjct: 500 DGCDQTVYTYTILIDGLFKEHKNEEALKF-WDAMIDKGITPTAAAFRTLASGLCLSGKFS 558
Query: 182 RAARVLDEATKRGLFPE 198
RA R+LDE G+ PE
Sbjct: 559 RACRILDELAPMGVIPE 575
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 8/184 (4%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM---EKVRCDPNERTLEAVLSVYCF 70
M +GV + +N +++ G + A+ + M ++VR P+ + ++ YC
Sbjct: 213 MRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVR--PDVVSYNILIKGYCR 270
Query: 71 AGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN-IH 128
AG ++ + E++ L P + Y L+ + + GL EM + N I
Sbjct: 271 AGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIP 330
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
Q ++ G + VF+++ G Y AL++++ G RE+ A L
Sbjct: 331 QHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFG-REKEAMALF 389
Query: 189 EATK 192
E K
Sbjct: 390 ERMK 393
>gi|297725689|ref|NP_001175208.1| Os07g0491500 [Oryza sativa Japonica Group]
gi|255677777|dbj|BAH93936.1| Os07g0491500, partial [Oryza sativa Japonica Group]
Length = 654
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 1/197 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE A+ RM +SG+ +S ++ ++ + G+ +EA+ + ++ N
Sbjct: 376 GREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFY 435
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ + AG+VD+SKE F+E+ + G +P CY +L+ AKS R DDA L M
Sbjct: 436 TSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMED 495
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G F + N + +++ +D + +G + L L G
Sbjct: 496 DGCDQTVYTYTILIDGLFKEHKNEEALKF-WDAMIDKGITPTAAAFRTLASGLCLSGKFS 554
Query: 182 RAARVLDEATKRGLFPE 198
RA R+LDE G+ PE
Sbjct: 555 RACRILDELAPMGVIPE 571
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 8/184 (4%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM---EKVRCDPNERTLEAVLSVYCF 70
M +GV + +N +++ G + A+ + M ++VR P+ + ++ YC
Sbjct: 209 MRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVR--PDVVSYNILIKGYCR 266
Query: 71 AGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN-IH 128
AG ++ + E++ L P + Y L+ + + GL EM + N I
Sbjct: 267 AGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIP 326
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
Q ++ G + VF+++ G Y AL++++ G RE+ A L
Sbjct: 327 QHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFG-REKEAMALF 385
Query: 189 EATK 192
E K
Sbjct: 386 ERMK 389
>gi|34393621|dbj|BAC83297.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 657
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 1/197 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE A+ RM +SG+ +S ++ ++ + G+ +EA+ + ++ N
Sbjct: 379 GREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFY 438
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ + AG+VD+SKE F+E+ + G +P CY +L+ AKS R DDA L M
Sbjct: 439 TSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMED 498
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G F + N + +++ +D + +G + L L G
Sbjct: 499 DGCDQTVYTYTILIDGLFKEHKNEEALKF-WDAMIDKGITPTAAAFRTLASGLCLSGKFS 557
Query: 182 RAARVLDEATKRGLFPE 198
RA R+LDE G+ PE
Sbjct: 558 RACRILDELAPMGVIPE 574
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 8/184 (4%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM---EKVRCDPNERTLEAVLSVYCF 70
M +GV + +N +++ G + A+ + M ++VR P+ + ++ YC
Sbjct: 212 MRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVR--PDVVSYNILIKGYCR 269
Query: 71 AGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN-IH 128
AG ++ + E++ L P + Y L+ + + GL EM + N I
Sbjct: 270 AGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIP 329
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
Q ++ G + VF+++ G Y AL++++ G RE+ A L
Sbjct: 330 QHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFG-REKEAMALF 388
Query: 189 EATK 192
E K
Sbjct: 389 ERMK 392
>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
Length = 796
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 105/241 (43%), Gaps = 22/241 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY+E + M +G + +FN++++ + + R EEAI +ME C P+ T
Sbjct: 270 GLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTY 329
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++S Y GL++E+ E QE++ G+ P V+ Y L++ + + D A EM
Sbjct: 330 NSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVR 389
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N S +IK G+F + M+ VFD L GY + +N LL
Sbjct: 390 NGCSPNLCTYNALIKMHGVRGKFTE----MMI--VFDDLRSAGYVPDVVTWNTLLAVFGQ 443
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAISV 225
GL + V E K G PE + L+ S RM E G Y IS
Sbjct: 444 NGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDIST 503
Query: 226 W 226
+
Sbjct: 504 Y 504
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + I RM E+G+ + ++NAV+ A +GGR+ +A K + EME C P+E +
Sbjct: 480 GLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSY 539
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L Y A +D+ K ++I + I P L+ V K N + E+
Sbjct: 540 SSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRR 599
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R S V M+ + + VE V + YN+L+ LG E
Sbjct: 600 RRCSLDINVLNAMV-SIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCE 658
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
+ +L E G+ P+ + +N ++++
Sbjct: 659 KCEAILTEIKSSGMRPDRYSYNTVIYA 685
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + + +G + ++N ++ F Q G E + EM+K P T
Sbjct: 410 GKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTY 469
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++S Y GL D++ E ++ + +GI P + Y +L+ A+ RW A L EM
Sbjct: 470 VSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEM 527
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + M ++G D++ ++I ++ + G F++A++ Y M + P+ T
Sbjct: 445 GLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTY 504
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
AVLS G ++++ F E++ P + Y LL YA + + D L ++++
Sbjct: 505 NAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYA 564
Query: 122 NRI 124
RI
Sbjct: 565 QRI 567
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 37/223 (16%)
Query: 20 ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC---------- 69
A ++ ++ A++ F + GRF +A+ + M P T VL VY
Sbjct: 182 APDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVV 241
Query: 70 --------------------------FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103
GL E+ + F E+K++G P + + LL VY
Sbjct: 242 VLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVY 301
Query: 104 AKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG 163
K+ R ++A G+L +M + +I D + +E + ++ G
Sbjct: 302 GKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALE-LKQEMEFRGMKPD 360
Query: 164 MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ Y L+ L +G + A E + G P L +N L+
Sbjct: 361 VVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALI 403
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 58/114 (50%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ K+ + +L+ M E+ + ++ ++N+++ + + G E+ E++ P+ +
Sbjct: 621 MVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYN 680
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
V+ Y G + E+ F E+K SG+ P ++ Y + + Y + +++A L+
Sbjct: 681 TVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLV 734
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + S M SGV + ++N I+++ FEEAI + C PNERT
Sbjct: 690 GQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTY 749
Query: 62 EAVLSVYCFAGLVDESK 78
++L YC G + E+K
Sbjct: 750 NSILEGYCRHGRMVEAK 766
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 57/115 (49%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++C+AIL+ + SG+ + S+N VI A+ + G+ +EA + + EM+ P+ T
Sbjct: 658 EKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIF 717
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ Y + +E+ + + + + G P+ Y +L Y + R +A L +
Sbjct: 718 IKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCRHGRMVEAKSFLSNL 772
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 36/241 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL++ + + S M G+ ++ ++N +++A +GG+ + A + EM + PN T
Sbjct: 304 GGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVT 363
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ Y AG +DE+ F E+K + I + Y LL++YAK R+++A + EM
Sbjct: 364 YSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEME 423
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE---------------------- 158
++ I VT + G + + ++ V+ VF+++ E
Sbjct: 424 SSGIKK-DAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLY 482
Query: 159 -------------GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
G + Y+AL++AL GL E A LDE TK G+ P + +N +
Sbjct: 483 QEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSI 542
Query: 206 V 206
+
Sbjct: 543 I 543
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 122/276 (44%), Gaps = 36/276 (13%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME---------KV 52
GL + + L M++ G+ N ++N++I+AF + G E I E KV
Sbjct: 515 GLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSKMSSSSLKV 574
Query: 53 RCDPNERTL-----EAVLSVY--------CFAGLVDESKEQ-------FQEIKSSGILPS 92
D E + ++ ++ C A + +++ F ++ I P+
Sbjct: 575 VEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPN 634
Query: 93 VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVF 152
V+ + +L ++ N ++DA LL+E+ + ++ V ++ G D+ W + +F
Sbjct: 635 VVTFSAILNACSRCNSFEDASMLLEELRLFD-NQVYGVAHGLLMGYGDNV--WVQAQSLF 691
Query: 153 DKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
D++ FYNAL + LW G R A V+ E +R ++ ++ ++ L D+H
Sbjct: 692 DEVKQMDSSTASAFYNALTDMLWHFGQRRGAQLVVLEGKRRHVWENMWSNSCL----DLH 747
Query: 213 RMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
M G A + WL + + G +LPQL +++
Sbjct: 748 LMSSGAARAMVHAWLLNIRSIVFEGHELPQLLSILT 783
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 7/221 (3%)
Query: 1 GGL-YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GG+ + I M +GV + +FN+++ +GG +E A + EM + +
Sbjct: 268 GGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIF 327
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T +L C G +D + + E+ I+P+V+ Y ++ YAK+ R D+A L +EM
Sbjct: 328 TYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEM 387
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
I + +V+ + + ++ V ++ G YNALL G
Sbjct: 388 KFASIG-LDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGK 446
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
E RV +E +FP L ++ L +DV+ +GG Y
Sbjct: 447 YEEVKRVFEEMKAERIFPNLLTYSTL---IDVYS--KGGLY 482
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 12/211 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERT 60
G E + M SG+ N ++NAVI+A +GG F A + + EM + P+ T
Sbjct: 234 GYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRIT 293
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L+V GL + ++ F E+ GI + Y LL K + D A+ ++ EM
Sbjct: 294 FNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMP 353
Query: 121 -----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
N ++ + G G D+ N +F+++ GL YN LL
Sbjct: 354 RKHIMPNVVTYSTVIDGYAKAGRLDEALN------LFNEMKFASIGLDRVSYNTLLSIYA 407
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
LG E A V E G+ + +N L+
Sbjct: 408 KLGRFEEALNVCKEMESSGIKKDAVTYNALL 438
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 77/161 (47%), Gaps = 8/161 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y+E + + M + N +++ +I+ + +GG ++EA++ + E +K +
Sbjct: 445 GKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLY 504
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C GLV+ + E+ GI P+V+ Y ++ + +S A ++D +
Sbjct: 505 SALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSG---SAECVIDPPYE 561
Query: 122 NRISNIH----QVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158
+S + +V + E D+ + Q+++ +F +L E
Sbjct: 562 TNVSKMSSSSLKVVEDATESEVGDKEDNQIIK-IFGQLAAE 601
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD--ESKEQFQ 82
+F+A+I A+ + G +EAIK + M+ PN T AV+ C G VD + E F
Sbjct: 222 AFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDA-CGKGGVDFNRAAEIFD 280
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ +G+ P + + LLAV + W+ A L EM
Sbjct: 281 EMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEM 317
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 71/147 (48%), Gaps = 2/147 (1%)
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN-RWDDAYGLLDEM 119
A++S Y +G DE+ + F+ +KSSG+ P+++ Y ++ K ++ A + DEM
Sbjct: 223 FSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEM 282
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
N + ++T + W+ +F ++ G + YN LL+A+ G
Sbjct: 283 LRNGVQP-DRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQ 341
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A +++ E ++ + P + ++ ++
Sbjct: 342 MDLAFQIMSEMPRKHIMPNVVTYSTVI 368
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + + +F+A+I+AF + G+ EA K Y EM K DP+ T
Sbjct: 305 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 364
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+K+ F+ + S P V+ Y L+ + K+ R D+ L EM
Sbjct: 365 SSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQ 424
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F + M + +F ++ +G + YN LL+ L G E
Sbjct: 425 RGLVGNTVTYTTLIQGLF-QAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLE 483
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V + + + P ++ +N ++
Sbjct: 484 KAMVVFEYLQRSKMEPTIYTYNIMI 508
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 91/202 (45%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM G + ++ V+ + G + A +ME+ + +P ++
Sbjct: 204 EAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTII 263
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C +D++ F+E+++ GI P+V+ Y L++ RW DA LL +M +I
Sbjct: 264 DGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI- 322
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N T + F E E ++D++ + Y++L+ +C+ R + A
Sbjct: 323 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLING-FCMHDRLDEAK 381
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ + + FP++ ++ L+
Sbjct: 382 QMFEFMVSKHCFPDVVSYSTLI 403
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 11/212 (5%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ +M +G N+ +FN +I + EA+ M C P+ T V+
Sbjct: 169 EAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVV 228
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ C G D + +++ + P V+ Y ++ K+ DDA L EM T I
Sbjct: 229 NGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIR 288
Query: 126 NIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I G + D S + + + K+N + + ++AL++A G
Sbjct: 289 PNVVTYSSLISCLCNYGRWSDASRL-LSDMIERKINPDVFT-----FSALIDAFVKEGKL 342
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
A ++ DE KR + P + ++ L+ +H
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 7/185 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S++ +I+ F + R +E ++ + EM + N T ++ AG D ++E F+E+
Sbjct: 398 SYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEM 457
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD--- 141
S G+ P++M Y LL K+ + + A + + + +++ MI+G
Sbjct: 458 VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 517
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
E W + F L+ +G + YN ++ G +E A + E + G P
Sbjct: 518 EDGWDL----FCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 573
Query: 202 HNKLV 206
+N L+
Sbjct: 574 YNTLI 578
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 82/184 (44%), Gaps = 1/184 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + MS+ G+ N+ ++ +I+ Q G + A + + EM PN T +L
Sbjct: 414 EGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 473
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G ++++ F+ ++ S + P++ Y +++ K+ + +D + L + +
Sbjct: 474 DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 533
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
MI G F + + + + +F ++ +G YN L+ A G RE +A
Sbjct: 534 PDVVAYNTMISG-FCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAE 592
Query: 186 VLDE 189
++ E
Sbjct: 593 LIKE 596
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 85/203 (41%), Gaps = 11/203 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L +M + G N + ++++ + R EA+ +M PN T ++
Sbjct: 137 AVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGL 196
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
E+ + + G P ++ Y +++ K D A+ LL++M ++
Sbjct: 197 FLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGV 256
Query: 129 QVTGQMIKG-----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +I G DD N +F ++ +G + Y++L+ L G A
Sbjct: 257 LIYTTIIDGLCKNKHMDDALN------LFKEMETKGIRPNVVTYSSLISCLCNYGRWSDA 310
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+R+L + +R + P++F + L+
Sbjct: 311 SRLLSDMIERKINPDVFTFSALI 333
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/207 (17%), Positives = 86/207 (41%), Gaps = 1/207 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M G+ N +++ +I F + + A+ +M K+ +PN TL ++L+ YC +
Sbjct: 106 QMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ E+ ++ +G P+ + + L+ N+ +A L+D M G
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYG 225
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ G + + + +K+ G+ Y +++ L + A + E
Sbjct: 226 VVVNG-LCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMET 284
Query: 193 RGLFPELFRHNKLVWSVDVHRMWEGGA 219
+G+ P + ++ L+ + + W +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDAS 311
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +IE + G+ E+ + + P+ ++S +C G +E+ F+E+
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----NRISNIHQVTGQMIKGEFD 140
K G LP+ CY L+ + + + L+ EM + S I VT + G D
Sbjct: 563 KEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLD 622
>gi|125606474|gb|EAZ45510.1| hypothetical protein OsJ_30168 [Oryza sativa Japonica Group]
Length = 651
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 1/197 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE A+ RM +SG+ +S ++ ++ + G+ +EA+ + ++ N
Sbjct: 425 GREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFY 484
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ + AG+VD+SKE F+E+ + G +P CY +L+ AKS R DDA L M
Sbjct: 485 TSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMED 544
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G F + N + +++ +D + +G + L L G
Sbjct: 545 DGCDQTVYTYTILIDGLFKEHKNEEALKF-WDAMIDKGITPTAAAFRTLASGLCLSGKFS 603
Query: 182 RAARVLDEATKRGLFPE 198
RA R+LDE G+ PE
Sbjct: 604 RACRILDELAPMGVIPE 620
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 8/184 (4%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM---EKVRCDPNERTLEAVLSVYCF 70
M +GV + +N +++ G + A+ + M ++VR P+ + ++ YC
Sbjct: 258 MRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVR--PDVVSYNILIKGYCR 315
Query: 71 AGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN-IH 128
AG ++ + E++ L P + Y L+ + + GL EM + N I
Sbjct: 316 AGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIP 375
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
Q ++ G + VF+++ G Y AL++++ G RE+ A L
Sbjct: 376 QHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFG-REKEAMALF 434
Query: 189 EATK 192
E K
Sbjct: 435 ERMK 438
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +FNA+I+AF + G+F EA K Y +M K DP+ T
Sbjct: 271 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTY 330
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +D++K+ F+ + S P V+ Y L+ + KS R +D L EM
Sbjct: 331 NSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSH 390
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F D + + VF ++ +G + Y+ LL+ L G E
Sbjct: 391 RGLVGDTVTYTTLIQGLFHD-GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 449
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V D K + +++ + ++
Sbjct: 450 KALEVFDYMQKSEIKLDIYIYTTMI 474
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 95/202 (47%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM + G N ++ V+ + G + A+ +ME + + + ++
Sbjct: 170 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTII 229
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C VD++ F+E+++ GI P+V+ Y L++ RW DA LL +M +I
Sbjct: 230 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI- 288
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E + E ++D + + YN+L+ +C+ R ++A
Sbjct: 289 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNG-FCMHDRLDKAK 347
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ + + FP++ +N L+
Sbjct: 348 QMFEFMVSKDCFPDVVTYNTLI 369
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 22/243 (9%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ +M E G ++ +F +I + EA+ M + C PN T V++
Sbjct: 138 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 197
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G D + +++++ I V+ + ++ K DDA L EM T I
Sbjct: 198 CKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 257
Query: 129 QVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+I G + D S + + + K+N + +NAL++A G A
Sbjct: 258 VTYSSLISCLCSYGRWSDASQL-LSDMIEKKINPN-----LVTFNALIDAFVKEGKFVEA 311
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED-LPQ 242
++ D+ KR + P++F +N LV +H + +M+E FM+ +D P
Sbjct: 312 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKA---------KQMFE-FMVSKDCFPD 361
Query: 243 LAT 245
+ T
Sbjct: 362 VVT 364
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/154 (18%), Positives = 64/154 (41%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +M GV + +++ +++ G+ E+A++ + M+K + ++
Sbjct: 417 QKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 476
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C AG VD+ + F + G+ P+V+ Y +++ +AY LL +M +
Sbjct: 477 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPN 536
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
+I+ D E + + +C G
Sbjct: 537 SGTYNTLIRAHLRDGDKAASAELIREMRSCRFVG 570
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +FNA+I+AF + G+F EA K Y +M K DP+ T
Sbjct: 309 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTY 368
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +D++K+ F+ + S P V+ Y L+ + KS R +D L EM
Sbjct: 369 NSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSH 428
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F D + + VF ++ +G + Y+ LL+ L G E
Sbjct: 429 RGLVGDTVTYTTLIQGLFHD-GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 487
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V D K + +++ + ++
Sbjct: 488 KALEVFDYMQKSEIKLDIYIYTTMI 512
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 95/202 (47%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM + G N ++ V+ + G + A+ +ME + + + ++
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTII 267
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C VD++ F+E+++ GI P+V+ Y L++ RW DA LL +M +I
Sbjct: 268 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI- 326
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E + E ++D + + YN+L+ +C+ R ++A
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNG-FCMHDRLDKAK 385
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ + + FP++ +N L+
Sbjct: 386 QMFEFMVSKDCFPDVVTYNTLI 407
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 22/243 (9%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ +M E G ++ +F +I + EA+ M + C PN T V++
Sbjct: 176 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 235
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G D + +++++ I V+ + ++ K DDA L EM T I
Sbjct: 236 CKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 295
Query: 129 QVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+I G + D S + + + K+N + +NAL++A G A
Sbjct: 296 VTYSSLISCLCSYGRWSDASQL-LSDMIEKKINPN-----LVTFNALIDAFVKEGKFVEA 349
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED-LPQ 242
++ D+ KR + P++F +N LV +H + +M+E FM+ +D P
Sbjct: 350 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKA---------KQMFE-FMVSKDCFPD 399
Query: 243 LAT 245
+ T
Sbjct: 400 VVT 402
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/154 (18%), Positives = 64/154 (41%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +M GV + +++ +++ G+ E+A++ + M+K + ++
Sbjct: 455 QKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 514
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C AG VD+ + F + G+ P+V+ Y +++ +AY LL +M +
Sbjct: 515 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPN 574
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
+I+ D E + + +C G
Sbjct: 575 SGTYNTLIRAHLRDGDKAASAELIREMRSCRFVG 608
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L M G A N S+N +I + + R EA + EM + P+ T ++
Sbjct: 359 EAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLM 418
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G E+ F+E+ SSG+LP +M Y +LL + K D+A LL EMH RI
Sbjct: 419 QGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIK 478
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +I+G F ++ + +F KL+ +G + YN +++ L GL + A
Sbjct: 479 PNIILYTILIRGMF-IAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYE 537
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ G P+ +N ++
Sbjct: 538 FFRKMEDDGFLPDSCSYNVII 558
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + + M SG N S+N VI + G A++ + +ME+ R PN T
Sbjct: 180 GKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTY 239
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C LV+E+ E E+ GI P V+ Y +L + + ++A L EM
Sbjct: 240 NTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEM-V 298
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R VT ++ E V + + +G YNAL++ +
Sbjct: 299 GRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMD 358
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +VL +G P L +N L+
Sbjct: 359 EAIKVLGIMIGKGCAPNLSSYNILI 383
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M V ++ +FN +++ + G EA M + +PN T
Sbjct: 285 GQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTY 344
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ YC +DE+ + + G P++ Y +L+ Y KS R ++A LL EM
Sbjct: 345 NALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSE 404
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ +++G + + +F ++ G + Y+ LL+ G +
Sbjct: 405 KNLTPDTVTYSTLMQGLCQVGRPREALN-LFKEMCSSGLLPDLMAYSILLDGFCKHGHLD 463
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++L E +R + P + + L+
Sbjct: 464 EALKLLKEMHERRIKPNIILYTILI 488
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 82/203 (40%), Gaps = 1/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y ++ ++M GV N S N +I + + A+ +M K+ P+ T
Sbjct: 112 YSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNT 171
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ C G + E+ F E+ SG P+V+ Y ++ K+ A + +M NR
Sbjct: 172 LINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNR 231
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+I D + VE++ + ++ G + YN +L LG A
Sbjct: 232 GKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVD-RGIPPDVVTYNTILHGFCSLGQLNEA 290
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
R+ E R + P+ N LV
Sbjct: 291 TRLFKEMVGRNVMPDTVTFNILV 313
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M SG+ + +++ +++ F + G +EA+K EM + R PN
Sbjct: 425 GRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILY 484
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ AG ++ +KE F ++ + GI P + Y +++ K D+AY +M
Sbjct: 485 TILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKM 542
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 58/141 (41%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M E + N + +I G+ E A + + ++ P+ T
Sbjct: 460 GHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTY 519
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ GL DE+ E F++++ G LP Y +++ + ++ A L+DEM
Sbjct: 520 NVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVG 579
Query: 122 NRISNIHQVTGQMIKGEFDDE 142
R S ++ E DE
Sbjct: 580 KRFSADSSTFQMLLDLESHDE 600
>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
Length = 766
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 22/241 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
LYKE + M SG + +FN++++ + + R +EAI+ EME+V C P+ T
Sbjct: 239 ALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTY 298
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+++S Y GL++++ QE++ G+ P V+ Y L++ ++ + D A DEM
Sbjct: 299 NSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVR 358
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N + + ++G+F + + VFD+ G+ + +N LL
Sbjct: 359 NGCKPNLCTYNALIKMHGVRGKFPE------MMAVFDEFRSAGFVPDIVTWNTLLAVFGQ 412
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAISV 225
GL + V E K G PE + L+ S RM E G Y +S
Sbjct: 413 NGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVST 472
Query: 226 W 226
+
Sbjct: 473 Y 473
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ I RM E+G+ + ++NAV+ A +GGR+E+A K + EME+ C P+E +
Sbjct: 449 GLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSY 508
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L Y A +D+ K +I S I P L+ V +K N +A E+
Sbjct: 509 SSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQ 568
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R S V M+ + + VE + + L YN+L+ LG E
Sbjct: 569 KRCSLDINVLNAMV-SIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCE 627
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
+ +L E G+ P+ + +N ++++
Sbjct: 628 KCENILTEIKSSGVRPDRYSYNTVIYA 654
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 3/204 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+KE +++ M E GVA + ++N +I R+ ++EA + + EM+ +P++ T +
Sbjct: 206 WKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNS 265
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L VY A DE+ E QE++ G PSV+ Y L++ Y K + A L EM
Sbjct: 266 LLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKG 325
Query: 124 ISNIHQVTGQMIKG-EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ +I G + + + +VEY D++ G + YNAL++ G
Sbjct: 326 MKPDVVTYTTLISGLDRAGKIDAAIVEY--DEMVRNGCKPNLCTYNALIKMHGVRGKFPE 383
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
V DE G P++ N L+
Sbjct: 384 MMAVFDEFRSAGFVPDIVTWNTLL 407
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 11/212 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ A+ M G+ + ++ +I + G+ + AI Y EM + C PN T
Sbjct: 309 GLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTY 368
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
A++ ++ G E F E +S+G +P ++ + LLAV+ ++ + G+ EM
Sbjct: 369 NALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKK 428
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
R + + ++ G FD + ++ ++ G + YNA+L AL
Sbjct: 429 AGYIPERDTYVSLISSYSRCGLFD------LAMQIYKRMMEAGIYPDVSTYNAVLSALAR 482
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
G E+A ++ E +R P+ + ++ L+ +
Sbjct: 483 GGRWEQAEKLFAEMEERDCKPDEYSYSSLLHA 514
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 66/135 (48%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ ++ + ILS M ES + ++ ++N+++ + + G E+ E++ P+ +
Sbjct: 590 MVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYN 649
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ Y G + E+ F E+K SG+ P V+ Y + + Y ++ +++A L+ M T
Sbjct: 650 TVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQ 709
Query: 123 RISNIHQVTGQMIKG 137
+ +++G
Sbjct: 710 GCKPNERTYNSIVEG 724
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 7/205 (3%)
Query: 6 ECQAILSR-MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
E A+ +R + GV + I + GR EA + P+ A+
Sbjct: 105 ELAAVAARELHGEGVLHHPRVLATAIRVMARAGRLAEA----SALLDAAPGPDAGAYTAL 160
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK-SNRWDDAYGLLDEMHTNR 123
+S + AG ++ F+ + SG+ P+++ Y ++L VY+K + W + L+ M +
Sbjct: 161 VSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHG 220
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
++ +I + ++ VFD++ G+ +N+LL+ + A
Sbjct: 221 VAPDRYTYNTLISC-CRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEA 279
Query: 184 ARVLDEATKRGLFPELFRHNKLVWS 208
V+ E + G P + +N L+ S
Sbjct: 280 IEVIQEMERVGCPPSVVTYNSLISS 304
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + S M SG+ + ++N ++++ FEEAI+ M C PNERT
Sbjct: 659 GQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTY 718
Query: 62 EAVLSVYCFAGLVDESK 78
+++ YC G + ++K
Sbjct: 719 NSIVEGYCRNGKLTDAK 735
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 55/108 (50%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++C+ IL+ + SGV + S+N VI A+ + G+ +EA + + EM+ P+ T
Sbjct: 627 EKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIF 686
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+ Y + +E+ E + + + G P+ Y ++ Y ++ + DA
Sbjct: 687 VKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDA 734
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 11/171 (6%)
Query: 41 EAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
EA KA++E+ + RC + L A++S+Y +V + ++ +K S I S Y L+
Sbjct: 558 EAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLM 617
Query: 101 AVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI-----KGEFDDESNWQMVEYVFDKL 155
+Y++ + +L E+ ++ + +I KG+ + S +F ++
Sbjct: 618 HMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASR------LFSEM 671
Query: 156 NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
C G + YN +++ + E A ++ +G P +N +V
Sbjct: 672 KCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIV 722
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 6/228 (2%)
Query: 1 GGLYKECQAILSRM-SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
G KE + M S+ + ++ ++NA+I F G + + A+K M+K C+PN
Sbjct: 249 SGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVF 308
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++ +C G ++E+KE F E+KS G+ P + Y L+ + ++ R D+A LL +M
Sbjct: 309 NYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDM 368
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
N+ VT +I G E ++ + ++L EG L Y +L +L G
Sbjct: 369 RENK-CRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGE 427
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227
++A +++ RG+ P N+L+ VH G A+ L
Sbjct: 428 LQKATQLVGLMLGRGVLPHFATSNELL----VHLCEAGKVGDAVMALL 471
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +FN++I+AF + G+ EA K + EM + DPN T
Sbjct: 305 GRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 364
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+++ F + S LP V+ Y L+ + K+ R ++ L EM
Sbjct: 365 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQ 424
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F + M + +F K+ +G + Y+ LL+ L G E
Sbjct: 425 RGLVGNTVTYNTLIQGLF-QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 483
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V + K + P ++ +N ++
Sbjct: 484 KALVVFEYLQKSKMEPNIYTYNIMI 508
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 90/202 (44%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM G + ++ V+ + G + A+ +MEK + + N ++
Sbjct: 204 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTII 263
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C +D++ + F ++++ GI P V Y L++ RW DA LL +M +I
Sbjct: 264 DGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKI- 322
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E E +FD++ + YN+L+ +C+ R + A
Sbjct: 323 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLING-FCMHDRLDEAQ 381
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ + P++ +N L+
Sbjct: 382 QIFTLMVSKDCLPDVVTYNTLI 403
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 11/217 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E A++ +M E G ++ +FN +I + EA+ M C P+ T
Sbjct: 164 GKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFT 223
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ C G +D + ++++ I +V+ Y ++ K DDA+ L ++M
Sbjct: 224 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKME 283
Query: 121 TNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
T I +I G + D S + + + K+N + +N+L++A
Sbjct: 284 TKGIKPDVFTYNSLISCLCNYGRWSDASRL-LSDMIERKINPN-----VVTFNSLIDAFA 337
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
G A ++ DE +R + P + +N L+ +H
Sbjct: 338 KEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 374
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 58/112 (51%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q I +M GV + +++ +++ + G+ E+A+ + ++K + +PN T ++
Sbjct: 451 QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEG 510
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C AG V++ + F + G+ P+V+ Y +++ + + ++A L EM
Sbjct: 511 MCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 562
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 83/203 (40%), Gaps = 11/203 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L +M + G + + ++++ + G R EA+ +M ++ P+ T ++
Sbjct: 137 AVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGL 196
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
E+ + + G P + Y ++ K D A LL +M +I
Sbjct: 197 FLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANV 256
Query: 129 QVTGQMIKG-----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +I G DD + +F+K+ +G + YN+L+ L G A
Sbjct: 257 VIYNTIIDGLCKYKHMDDAFD------LFNKMETKGIKPDVFTYNSLISCLCNYGRWSDA 310
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+R+L + +R + P + N L+
Sbjct: 311 SRLLSDMIERKINPNVVTFNSLI 333
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 53/120 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + + +S + N ++N +IE + G+ E+ + + PN
Sbjct: 480 GKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 539
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S +C GL +E+ F+E+K G LP CY L+ + + L+ EM +
Sbjct: 540 TTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRS 599
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 83/185 (44%), Gaps = 1/185 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + MS+ G+ N+ ++N +I+ Q G + A K + +M P+ T +
Sbjct: 413 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 472
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L C G ++++ F+ ++ S + P++ Y +++ K+ + +D + L + +
Sbjct: 473 LDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 532
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ MI G F + + + +F ++ +G YN L+ A G + +A
Sbjct: 533 KPNVIIYTTMISG-FCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASA 591
Query: 185 RVLDE 189
++ E
Sbjct: 592 ELIKE 596
>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
Length = 784
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 22/241 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
LYKE + M SG + +FN++++ + + R +EAI+ EME+V C P+ T
Sbjct: 257 ALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTY 316
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+++S Y GL++++ QE++ G+ P V+ Y L++ ++ + D A DEM
Sbjct: 317 NSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVR 376
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N + + ++G+F + + VFD+ G+ + +N LL
Sbjct: 377 NGCKPNLCTYNALIKMHGVRGKFPE------MMAVFDEFRSAGFVPDIVTWNTLLAVFGQ 430
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAISV 225
GL + V E K G PE + L+ S RM E G Y +S
Sbjct: 431 NGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVST 490
Query: 226 W 226
+
Sbjct: 491 Y 491
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ I RM E+G+ + ++NAV+ A +GGR+E+A K + EME+ C P+E +
Sbjct: 467 GLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSY 526
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L Y A +D+ K +I S I P L+ V +K N +A E+
Sbjct: 527 SSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQ 586
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R S V M+ + + VE + + L YN+L+ LG E
Sbjct: 587 KRCSLDINVLNAMV-SIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCE 645
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
+ +L E G+ P+ + +N ++++
Sbjct: 646 KCENILTEIKSSGVRPDRYSYNTVIYA 672
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 3/204 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+KE +++ M E GVA + ++N +I R+ ++EA + + EM+ +P++ T +
Sbjct: 224 WKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNS 283
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L VY A DE+ E QE++ G PSV+ Y L++ Y K + A L EM
Sbjct: 284 LLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKG 343
Query: 124 ISNIHQVTGQMIKG-EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ +I G + + + +VEY D++ G + YNAL++ G
Sbjct: 344 MKPDVVTYTTLISGLDRAGKIDAAIVEY--DEMVRNGCKPNLCTYNALIKMHGVRGKFPE 401
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
V DE G P++ N L+
Sbjct: 402 MMAVFDEFRSAGFVPDIVTWNTLL 425
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 11/212 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ A+ M G+ + ++ +I + G+ + AI Y EM + C PN T
Sbjct: 327 GLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTY 386
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
A++ ++ G E F E +S+G +P ++ + LLAV+ ++ + G+ EM
Sbjct: 387 NALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKK 446
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
R + + ++ G FD + ++ ++ G + YNA+L AL
Sbjct: 447 AGYIPERDTYVSLISSYSRCGLFD------LAMQIYKRMMEAGIYPDVSTYNAVLSALAR 500
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
G E+A ++ E +R P+ + ++ L+ +
Sbjct: 501 GGRWEQAEKLFAEMEERDCKPDEYSYSSLLHA 532
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 66/135 (48%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ ++ + ILS M ES + ++ ++N+++ + + G E+ E++ P+ +
Sbjct: 608 MVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYN 667
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ Y G + E+ F E+K SG+ P V+ Y + + Y ++ +++A L+ M T
Sbjct: 668 TVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQ 727
Query: 123 RISNIHQVTGQMIKG 137
+ +++G
Sbjct: 728 GCKPNERTYNSIVEG 742
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 6/192 (3%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV + I + GR EA + P+ A++S + AG ++
Sbjct: 136 GVLHHPRVLATAIRVMARAGRLAEA----SALLDAAPGPDAGAYTALVSAFSRAGRFRDA 191
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAK-SNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136
F+ + SG+ P+++ Y ++L VY+K + W + L+ M + ++ +I
Sbjct: 192 VAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLIS 251
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
+ ++ VFD++ G+ +N+LL+ + A V+ E + G
Sbjct: 252 C-CRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCP 310
Query: 197 PELFRHNKLVWS 208
P + +N L+ S
Sbjct: 311 PSVVTYNSLISS 322
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + S M SG+ + ++N ++++ FEEAI+ M C PNERT
Sbjct: 677 GQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTY 736
Query: 62 EAVLSVYCFAGLVDESK 78
+++ YC G + ++K
Sbjct: 737 NSIVEGYCRNGKLTDAK 753
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 55/108 (50%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++C+ IL+ + SGV + S+N VI A+ + G+ +EA + + EM+ P+ T
Sbjct: 645 EKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIF 704
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+ Y + +E+ E + + + G P+ Y ++ Y ++ + DA
Sbjct: 705 VKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDA 752
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 11/171 (6%)
Query: 41 EAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
EA KA++E+ + RC + L A++S+Y +V + ++ +K S I S Y L+
Sbjct: 576 EAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLM 635
Query: 101 AVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI-----KGEFDDESNWQMVEYVFDKL 155
+Y++ + +L E+ ++ + +I KG+ + S +F ++
Sbjct: 636 HMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASR------LFSEM 689
Query: 156 NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
C G + YN +++ + E A ++ +G P +N +V
Sbjct: 690 KCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIV 740
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 2/207 (0%)
Query: 1 GGLYKECQAILSRM-SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
G KE + M S+ + ++ ++NA+I F G + + A+K M+K C+PN
Sbjct: 292 SGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVF 351
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++ +C G ++E+KE F E+KS G+ P + Y L+ + ++ R D+A LL +M
Sbjct: 352 NYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDM 411
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
N+ VT +I G E ++ + ++L EG L Y +L +L G
Sbjct: 412 XENK-CRADTVTFNVILGGLCREGRFEEAXGMLERLPYEGVYLNKASYRIVLNSLCREGE 470
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
++A +++ RG+ P N+L+
Sbjct: 471 LQKATQLVGLMLGRGVLPHFATSNELL 497
>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 917
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL++M + N S++ VI+ F + GRF+EA+ + EM + + + +LS+Y
Sbjct: 396 ILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYT 455
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +E+ + +E+ S GI V+ Y LL Y K ++D+ + EM +
Sbjct: 456 KVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLL 515
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G + ++ VF + G + Y+AL++AL GL A ++DE
Sbjct: 516 TYSTLIDG-YSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDE 574
Query: 190 ATKRGLFPELFRHNKLV 206
TK G+ P + +N ++
Sbjct: 575 MTKEGISPNVVTYNSII 591
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 12/211 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERT 60
GL++E ++ + M E G+ N ++NAVI+A +GG F++ K + EM++ P+ T
Sbjct: 282 GLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRIT 341
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L+V GL + ++ F E+ + I V Y LL K + D A+ +L +M
Sbjct: 342 FNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMP 401
Query: 121 TNRI-----SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
RI S + G G FD+ N +F ++ L YN LL
Sbjct: 402 AKRIMPNVVSYSTVIDGFAKAGRFDEALN------LFGEMRYLNIALDRVSYNTLLSIYT 455
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G E A +L E G+ ++ +N L+
Sbjct: 456 KVGRSEEALDILREMASVGIKKDVVTYNALL 486
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 123/278 (44%), Gaps = 48/278 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFE---------------EAIKAY 46
GL +++ M++ G++ N ++N++I+AF + E A+
Sbjct: 563 GLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSADYSNGGSLPFSSSALSEL 622
Query: 47 VEMEKVR---------CDPNERTLEAVLSVYCFAGLVDES--KEQFQEIKSSGILPSVMC 95
E E R + N R ++ C G+ + S E F+++ I P+V+
Sbjct: 623 TETEGNRVIQLFGQLTSEGNNR-----MTKDCKEGMQELSCILEVFRKMHQLEIKPNVVT 677
Query: 96 YCMLLAVYAKSNRWDDAYGLLDEMHTNRI--SNIHQVTGQMIKGEFDDESNWQMVEYVFD 153
+ +L ++ N ++DA LL+E+ R+ + ++ V ++ G+ E+ W + +FD
Sbjct: 678 FSAILNACSRCNSFEDASMLLEEL---RLFDNKVYGVVHGLLMGQ--RENVWLQAQSLFD 732
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS---VD 210
K+N FYNAL + LW G + A V E R ++ VWS +D
Sbjct: 733 KVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWEN-------VWSDSCLD 785
Query: 211 VHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
+H M G A + WL + + G +LP++ +++
Sbjct: 786 LHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILT 823
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E IL M+ G+ ++ ++NA++ + + G+++E K + EM++ PN T
Sbjct: 458 GRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTY 517
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y GL E+ E F+E KS+G+ V+ Y L+ K+ A L+DEM
Sbjct: 518 STLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTK 577
Query: 122 NRIS 125
IS
Sbjct: 578 EGIS 581
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL-VDESKEQFQE 83
+F+A+I A+ + G EEAI + M++ PN T AV+ G+ + + F E
Sbjct: 270 AFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDE 329
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
++ + + P + + LLAV ++ W+ A L DEM RI
Sbjct: 330 MQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRI 370
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 51/105 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y E + + + M V N +++ +I+ + +GG ++EA++ + E + +
Sbjct: 493 GKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLY 552
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
A++ C GLV + E+ GI P+V+ Y ++ + +S
Sbjct: 553 SALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRS 597
>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 99/206 (48%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G L+++ Q + + M G+ ++ ++N +I+A +GG+ E A M PN T
Sbjct: 318 GSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVT 377
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y G +E+ + ++K SG+ P + Y L+ +YAK R+DDA +M
Sbjct: 378 YSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDME 437
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ VT + + + ++ +FDK+ EG + Y+AL++A G+
Sbjct: 438 RVGL-KADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMH 496
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A + E + GL P++ ++ L+
Sbjct: 497 QDATSIFVEFKRAGLKPDVVLYSSLI 522
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 127/255 (49%), Gaps = 12/255 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFE--EAIKAYVEME---KVRCDP 56
GL ++ +L M+++G+ N ++N++I+A+ + G+ + EA K + + KV
Sbjct: 529 GLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVGDRS 588
Query: 57 NE---RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
E +TL + + G++ + F E++ G+ P+V+ + +L ++ + +A
Sbjct: 589 TEIICKTLTSQQNANDHTGVL-AAVSVFHEMQQFGLKPNVVTFSAILNACSRCSSLQEAS 647
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
LL++M S ++ + ++ G E W + +FD++ Y G FYNAL +
Sbjct: 648 VLLEQMRFFD-SWVYGIAHGLLMGL--REHVWVEAQRLFDEIARMDYATGAAFYNALTDV 704
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
LW G R+ A V+ A +R ++ + ++ + +D+H M G A + VWL + +
Sbjct: 705 LWHFGQRQGAQEVVVAAKRRQVWENAWWRSEQQFCLDLHLMSVGAAQAMLHVWLLDLRAL 764
Query: 234 FMMGEDLPQLATVVV 248
G LP++ +++
Sbjct: 765 VWDGHALPRVLSILT 779
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 94/203 (46%), Gaps = 12/203 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +R ++G N +++A++ A+ + GR EA+K + M+K C PN T ++ C
Sbjct: 221 VFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDA-C 279
Query: 70 FAGLVDESK--EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-- 125
G VD K + F+E++ G+ P + + L+AV ++ + W+D+ + EM I
Sbjct: 280 GKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQD 339
Query: 126 --NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ + + KG ++ + + + + Y+ +++ LG E A
Sbjct: 340 IFTYNTLIDAVCKG-----GQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEA 394
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+ + + G+ P+ +N L+
Sbjct: 395 IGLYHDMKESGVRPDRVSYNTLI 417
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 70/143 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G YK+ + +M G+ N +++A+I+A+ + G ++A +VE ++ P+
Sbjct: 459 GKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLY 518
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C GLV+++ QE+ +GI P+++ Y L+ Y ++ + D+ M
Sbjct: 519 SSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPI 578
Query: 122 NRISNIHQVTGQMIKGEFDDESN 144
N + + + ++I + N
Sbjct: 579 NVFNKVGDRSTEIICKTLTSQQN 601
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + M G+ + ++NA+I+A+ + G++++A + +M+ PN T
Sbjct: 424 GRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTY 483
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ Y AG+ ++ F E K +G+ P V+ Y L+ K +DA LL EM
Sbjct: 484 SALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEM 541
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 103/241 (42%), Gaps = 22/241 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL++E + M +G + +FN++++ + + + EEAI ME C P+ T
Sbjct: 269 GLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTY 328
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++S Y GL++E+ E QE++ G+ P V+ Y L++ + + D A EM
Sbjct: 329 NSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVR 388
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N S +IK G+F + + VFD L GY + +N LL
Sbjct: 389 NGCSPNLCTYNALIKLHGVRGKFTE------MMAVFDDLRSAGYVPDVVTWNTLLSVFGQ 442
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAISV 225
GL + V E K G PE + L+ S RM E G Y IS
Sbjct: 443 NGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDIST 502
Query: 226 W 226
+
Sbjct: 503 Y 503
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + I RM E+G+ + ++NAV+ A +GGR+E+A K + EM C P+E +
Sbjct: 479 GLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSY 538
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L Y A +D+ K ++I + I L+ V K N + E+
Sbjct: 539 SSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRR 598
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R S V M+ + + VE V + YN+L+ LG E
Sbjct: 599 RRCSLDINVLNAMV-SIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCE 657
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
+ +L E G+ P+ + +N ++++
Sbjct: 658 KCESILTEIKSSGMRPDRYSYNTVIYA 684
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E A+ + +G + ++N ++ F Q G E + EM+K P T
Sbjct: 409 GKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTY 468
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++S Y GL D++ E ++ + +GI P + Y +L+ A+ RW+ A L EM
Sbjct: 469 VSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEM 526
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + M ++G D++ ++I ++ + G F++A++ Y M + P+ T
Sbjct: 444 GLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTY 503
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
AVLS G +++++ F E+ P + Y LL YA + + D L ++++
Sbjct: 504 NAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYA 563
Query: 122 NRI 124
RI
Sbjct: 564 ERI 566
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 87/236 (36%), Gaps = 37/236 (15%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
C A S + E+ A ++ ++ A++ AF + GRF +A+ + M P T V
Sbjct: 168 CLAEASAILEAAPAPDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFH 227
Query: 67 VYC--------FAGLVDESKEQ----------------------------FQEIKSSGIL 90
Y LVD KE F E+K++G
Sbjct: 228 AYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFE 287
Query: 91 PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150
P + + LL VY K+ + ++A G+L M + +I D + +E
Sbjct: 288 PDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALE- 346
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ ++ G + Y L+ L +G + A E + G P L +N L+
Sbjct: 347 LKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALI 402
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 58/114 (50%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ K+ + +LS M E+ + ++ ++N+++ + + G E+ E++ P+ +
Sbjct: 620 MVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYN 679
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
V+ Y G + E+ F E+K SG+ P ++ Y + + Y + +++A L+
Sbjct: 680 TVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLV 733
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 58/115 (50%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++C++IL+ + SG+ + S+N VI A+ + G+ +EA + + EM+ P+ T
Sbjct: 657 EKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIF 716
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ Y + +E+ + + + + G P+ + +L Y++ R +A L +
Sbjct: 717 IKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRMVEAKSFLSNL 771
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + S M SGV + ++N I+++ FEEAI + C PNERT
Sbjct: 689 GQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTF 748
Query: 62 EAVLSVYCFAGLVDESK 78
++L Y G + E+K
Sbjct: 749 NSILQGYSRHGRMVEAK 765
>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
Length = 844
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 1/218 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+Y E IL M ++ +S ++N ++ A+ + G +EE M + PN T
Sbjct: 351 AGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVT 410
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ Y AG ++ + F ++K SG +P+V Y +LA+ K +R ++ +L +M
Sbjct: 411 YTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMR 470
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N +++T + D+ + V +VF ++ G+ G +N L+ A G
Sbjct: 471 INGCPP-NRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSE 529
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
AA++ DE K G P +N L+ ++ W+
Sbjct: 530 LDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAA 567
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 99/206 (48%), Gaps = 2/206 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR-FEEAIKAYVEMEKVRCDPNERT 60
G YK+ A+ RM + G++ + ++N +++ + + GR +++ + EM +E T
Sbjct: 246 GKYKQAIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRNEGLQFDEFT 305
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+S GL++E+KE F E+KSSG P + Y LL V+ K+ + +A +L EM
Sbjct: 306 CSTVISACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEME 365
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + + VT + + ++ V D + +G Y ++ A G
Sbjct: 366 DNNCT-LDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKE 424
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+A ++ ++ K G P + +N ++
Sbjct: 425 VKALQLFNQMKKSGCVPNVCTYNSIL 450
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +K + M G D+FN +I A+ + G +A K Y EM K P T
Sbjct: 492 GKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTY 551
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+L+ G ++ ++++ G P+ + ++L YAK + +++
Sbjct: 552 NALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYD 611
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+I + +I F + M E F++L GY M +N++L + E
Sbjct: 612 GQIFPSWVLLRTLILANFKCRAVRGM-ERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYE 670
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA ++LD + GL P+L +N L+
Sbjct: 671 RAQKMLDLIRESGLQPDLVTYNSLM 695
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 2/211 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++S V +S + +I + ++ A+K ++ + + R +L Y
Sbjct: 184 VVSNSVSGDVKLDSKAVELMIRILGRESKYSIALKLLDKIPIDKYSLDVRACTTILHAYS 243
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR-WDDAYGLLDEMHTNRISNIH 128
G ++ F+ +K G+ PS++ Y ++L VY K R WD LLDEM N
Sbjct: 244 RNGKYKQAIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMR-NEGLQFD 302
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ T + E + F +L GY G YNALL+ G+ A +L
Sbjct: 303 EFTCSTVISACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILK 362
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
E + +N+LV + +E GA
Sbjct: 363 EMEDNNCTLDSVTYNELVAAYVRAGFYEEGA 393
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +K +++L M G N SF+ ++ + +GG + ++ + P+ L
Sbjct: 562 GDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLL 621
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ V + F+E+ +G P ++ + +L+++AK+N ++ A +LD +
Sbjct: 622 RTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRE 681
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + VT + + E + L G + YN +++ GL +
Sbjct: 682 SGLQP-DLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQ 740
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A RV+ E T RG+ P +F +N V
Sbjct: 741 EAIRVMSEMTTRGICPCIFTYNTFV 765
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 13/151 (8%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + IL + +SG + + S+N +I+ F + G +EAI+ EM P T +
Sbjct: 706 KAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFV 765
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S Y G+ E E + P+ + Y +++ Y K+ ++ DA + +
Sbjct: 766 SGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKARKYQDAMDFIFGIKN---- 821
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLN 156
I FD+ S ++ +V D +N
Sbjct: 822 ---------IDDSFDNHSTQRLASHVRDMMN 843
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E ++S M+ G+ ++N + + G F E + M + C PNE T
Sbjct: 737 GLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTY 796
Query: 62 EAVLSVYCFA 71
+ ++ YC A
Sbjct: 797 KIIVDGYCKA 806
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 9/209 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + +++ ++ G + S+N ++ AF G+++E K EM C+PN+ T
Sbjct: 266 GMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTY 325
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S C G +DE+ + + + P Y L++ K R D A G++D M +
Sbjct: 326 SILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMIS 385
Query: 122 N----RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
N I N + + + K N +F+KL G + YN ++ ALW
Sbjct: 386 NGCLPDIVNYNTILAALCK-----NGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSC 440
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G R RA ++ +G+ P+ +N L+
Sbjct: 441 GDRSRALGMVPAMISKGIDPDEITYNSLI 469
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I +++ G N S+N +I A G A+ M DP+E T +++S C
Sbjct: 414 IFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLC 473
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
GLV+E+ +++ SG P+V+ Y ++L K R DDA G+ EM
Sbjct: 474 RDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEM 523
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 16/214 (7%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +IEA G EA+K EM P+ T A++ C G+V+ + E +
Sbjct: 219 TYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSL 278
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF----- 139
S G P V+ Y +LL + +WD+ L+ EM + R ++VT ++
Sbjct: 279 TSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFS-RGCEPNKVTYSILISSLCRFGR 337
Query: 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
DE+ + + +L + Y Y+ L+ AL G + A ++D G P++
Sbjct: 338 IDEAISVLKVMIEKELTPDTYS-----YDPLISALCKEGRLDLAIGIMDYMISNGCLPDI 392
Query: 200 FRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
+N ++ ++ G A A+ ++ NK+ M
Sbjct: 393 VNYNTILAAL----CKNGNANQALEIF-NKLRGM 421
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 90/195 (46%), Gaps = 12/195 (6%)
Query: 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG 88
+I+ F E+A + +E+ + +P+ AV+S +C ++ + + +K+ G
Sbjct: 119 LIKGFFNFKNIEKASRV-MEILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARG 177
Query: 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR-----ISNIHQVTGQMIKGEFDDES 143
LP ++ Y +++ + A +LD++ + I+ + +++G ++
Sbjct: 178 FLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEA- 236
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+++E + + G M YNA++ + G+ ERAA ++ T +G P++ +N
Sbjct: 237 -MKLLEEMLAR----GLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYN 291
Query: 204 KLVWSVDVHRMWEGG 218
L+ + W+ G
Sbjct: 292 ILLRAFLNQGKWDEG 306
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 51/111 (45%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
I+ M +G + ++N ++ A + G +A++ + ++ + C PN + ++S
Sbjct: 378 GIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISAL 437
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G + + S GI P + Y L++ + ++A GLLD+M
Sbjct: 438 WSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDM 488
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E +L M +SG S+N V+ + R ++AI + EM + C PNE T
Sbjct: 476 GLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTY 535
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGIL 90
++ FAG E+ E + S ++
Sbjct: 536 ILLIEGIGFAGWRTEAMELANSLFSRDVI 564
>gi|356557983|ref|XP_003547289.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 707
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 116/272 (42%), Gaps = 37/272 (13%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERT 60
G+YKE M +G+ +D +N ++ + G + A++ + EM C P+ T
Sbjct: 366 GVYKE-------MKGNGMDMTADLYNKLLAMYADMGYIDRAVEIFYEMNSSGTCQPDSWT 418
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-------- 112
+++++Y +G V E++ E+ SG P++ L+ Y K+ R DD
Sbjct: 419 FASLIAIYSRSGKVSEAEGMLNEMIQSGFQPTIFVLTSLVHCYGKAKRTDDVVKVFKQLL 478
Query: 113 -YGLLDEMH--------------------TNRISNIHQVTGQMIKGEFDDESNWQMVEYV 151
G++ H T+ I + G ++K ++E + V
Sbjct: 479 ELGIVPNDHFCCSLLNVLTQAPKEELGKLTDCIEKANTKLGSVVKYLVEEEGDGDFRNEV 538
Query: 152 FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDV 211
+ LN + M N L++ L + ERA +LD ++ + ++ WS+ +
Sbjct: 539 SEFLNSIDAEVKMPLCNCLIDLCVKLNVPERACDLLDLGLMLEIYKNIQSKSQTQWSLHL 598
Query: 212 HRMWEGGAYTAISVWLNKMYEMFMMGEDLPQL 243
+ G A TA+ VW+N + + GEDLP L
Sbjct: 599 KELSVGAAMTALHVWINDLSKALESGEDLPPL 630
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 2/186 (1%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
++ +F+A+I+ + G ++ +K Y EM+ + PN T +L A ++K +
Sbjct: 274 DAAAFSALIKMYSMAGNYDRCLKIYQEMKVLGVKPNVVTYNTLLGAMLKAEKHRQAKAIY 333
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+E++S+G+ P + Y LL VY ++ +DA G+ EM N + + +++ D
Sbjct: 334 KEMRSNGVSPDFITYACLLEVYTIAHYSEDALGVYKEMKGNGMDMTADLYNKLLAMYADM 393
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC-LGLRERAARVLDEATKRGLFPELF 200
+ VE +F ++N G + A L A++ G A +L+E + G P +F
Sbjct: 394 GYIDRAVE-IFYEMNSSGTCQPDSWTFASLIAIYSRSGKVSEAEGMLNEMIQSGFQPTIF 452
Query: 201 RHNKLV 206
LV
Sbjct: 453 VLTSLV 458
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ +AI M +GV+ + ++ ++E + E+A+ Y EM+ D
Sbjct: 326 HRQAKAIYKEMRSNGVSPDFITYACLLEVYTIAHYSEDALGVYKEMKGNGMDMTADLYNK 385
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L++Y G +D + E F E+ SSG P + L+A+Y++S + +A G+L+EM
Sbjct: 386 LLAMYADMGYIDRAVEIFYEMNSSGTCQPDSWTFASLIAIYSRSGKVSEAEGMLNEM 442
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y C I M GV N ++N ++ A + + +A Y EM P+ T
Sbjct: 288 AGNYDRCLKIYQEMKVLGVKPNVVTYNTLLGAMLKAEKHRQAKAIYKEMRSNGVSPDFIT 347
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L VY A +++ ++E+K +G+ + Y LLA+YA D A + EM+
Sbjct: 348 YACLLEVYTIAHYSEDALGVYKEMKGNGMDMTADLYNKLLAMYADMGYIDRAVEIFYEMN 407
Query: 121 TN 122
++
Sbjct: 408 SS 409
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 9/209 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + +++ ++ G + S+N ++ AF G+++E K EM C+PN+ T
Sbjct: 256 GMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTY 315
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S C G +DE+ + + + P Y L++ K R D A G++D M +
Sbjct: 316 SILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMIS 375
Query: 122 N----RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
N I N + + + K N +F+KL G + YN ++ ALW
Sbjct: 376 NGCLPDIVNYNTILAALCK-----NGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSC 430
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G R RA ++ +G+ P+ +N L+
Sbjct: 431 GDRSRALGMVPAMISKGVDPDEITYNSLI 459
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I +++ G N S+N +I A G A+ M DP+E T +++S C
Sbjct: 404 IFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLC 463
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
GLV+E+ +++ SG P+V+ Y ++L K R DDA G+ EM
Sbjct: 464 RDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEM 513
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 16/214 (7%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +IEA G EA+K EM P+ T A++ C G+V+ + E +
Sbjct: 209 TYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSL 268
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF----- 139
S G P V+ Y +LL + +WD+ L+ EM + R ++VT ++
Sbjct: 269 TSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFS-RGCEPNKVTYSILISSLCRFGR 327
Query: 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
DE+ + + +L + Y Y+ L+ AL G + A ++D G P++
Sbjct: 328 IDEAISVLKVMIEKELTPDTYS-----YDPLISALCKEGRLDLAIGIMDYMISNGCLPDI 382
Query: 200 FRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
+N ++ ++ G A A+ ++ NK+ M
Sbjct: 383 VNYNTILAAL----CKNGNANQALEIF-NKLRGM 411
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 90/195 (46%), Gaps = 12/195 (6%)
Query: 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG 88
+I+ F E+A + +E+ + +P+ AV+S +C ++ + + +K+ G
Sbjct: 109 LIKGFFNFKNIEKASRV-MEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARG 167
Query: 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR-----ISNIHQVTGQMIKGEFDDES 143
LP ++ Y +++ + A +LD++ + I+ + +++G ++
Sbjct: 168 FLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEA- 226
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+++E + + G M YNA++ + G+ ERAA ++ T +G P++ +N
Sbjct: 227 -MKLLEEMLAR----GLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYN 281
Query: 204 KLVWSVDVHRMWEGG 218
L+ + W+ G
Sbjct: 282 ILLRAFLNQGKWDEG 296
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/200 (18%), Positives = 87/200 (43%), Gaps = 1/200 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+RM G + ++N +I + + A+K ++ C P T ++
Sbjct: 159 VLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATI 218
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++E+ + +E+ + G+LP + Y ++ K + A L+ + T++
Sbjct: 219 VEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSL-TSKGCKPDV 277
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ ++ F ++ W E + ++ G Y+ L+ +L G + A VL
Sbjct: 278 ISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKV 337
Query: 190 ATKRGLFPELFRHNKLVWSV 209
++ L P+ + ++ L+ ++
Sbjct: 338 MIEKELTPDTYSYDPLISAL 357
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 51/112 (45%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
I+ M +G + ++N ++ A + G +A++ + ++ + C PN + ++S
Sbjct: 368 GIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISAL 427
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
G + + S G+ P + Y L++ + ++A GLLD+M
Sbjct: 428 WSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDME 479
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E +L M +SG S+N V+ + R ++AI + EM + C PNE T
Sbjct: 466 GLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTY 525
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGIL 90
++ FAG E+ E + S ++
Sbjct: 526 ILLIEGIGFAGWRTEAMELANSLFSRDVI 554
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 84/211 (39%), Gaps = 7/211 (3%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
ES + ++NAVI F + R E A + M+ P+ T ++ C +
Sbjct: 130 ESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLG 189
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
+ + ++ +P+V+ Y +L+ ++A LL+EM + +I
Sbjct: 190 LALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAII 249
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+G E + + L +G + YN LL A G + +++ E RG
Sbjct: 250 RG-MCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGC 308
Query: 196 FPELFRHNKLVWSVDVHRMWEGGAYT-AISV 225
P NK+ +S+ + + G AISV
Sbjct: 309 EP-----NKVTYSILISSLCRFGRIDEAISV 334
>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
Length = 730
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 124/289 (42%), Gaps = 48/289 (16%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGLY+E + ++G+ + ++A+I+A + G E A+ EM K PN T
Sbjct: 365 GGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVT 424
Query: 61 LEAVLSVYCFAGLVDESKEQ---------------------------------------- 80
+++ + +G+V+++ E
Sbjct: 425 YNSIIDAFGRSGIVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILA 484
Query: 81 -FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF 139
F ++ I P+V+ + +L ++ N ++DA LL+E+ + ++ V ++ G
Sbjct: 485 VFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFD-NQVYGVAHGLLMGYG 543
Query: 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
D+ W + +FD++ FYNAL + LW G R A V+ E +R ++ +
Sbjct: 544 DNV--WVQAQSLFDEVKQMDSSTASAFYNALTDMLWHFGQRRGAQLVVLEGKRRHVWENM 601
Query: 200 FRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
+ ++ L D+H M G A + WL + + G +LPQL +++
Sbjct: 602 WSNSCL----DLHLMSSGAARAMVHAWLLNIRSIVFEGHELPQLLSILT 646
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG I+S M + N +++ VI+ + + GR +EA+ + EM+ + +
Sbjct: 225 GGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVS 284
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+LS+Y G +E+ +E++SSGI + Y LL Y K ++++ + +EM
Sbjct: 285 YNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMK 344
Query: 121 TNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
RI N+ +T + + +Q VF + G + Y+AL++AL GL
Sbjct: 345 AERIFPNL--LTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGL 402
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
E A LDE TK G+ P + +N ++
Sbjct: 403 VESAVSFLDEMTKEGIRPNVVTYNSII 429
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 13/217 (5%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVR------CDPNERTLEA 63
L +SG+ N ++NAVI+A +GG F A + + EM + + T
Sbjct: 158 LGNRGDSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNT 217
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L C G +D + + E+ I+P+V+ Y ++ YAK+ R D+A L +EM
Sbjct: 218 LLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFAS 277
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I + +V+ + + ++ V ++ G YNALL G E
Sbjct: 278 IG-LDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEV 336
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
RV +E +FP L ++ L +DV+ +GG Y
Sbjct: 337 KRVFEEMKAERIFPNLLTYSTL---IDVYS--KGGLY 368
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 56/111 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y+E + + M + N +++ +I+ + +GG ++EA++ + E +K +
Sbjct: 331 GKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLY 390
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
A++ C GLV+ + E+ GI P+V+ Y ++ + +S +DA
Sbjct: 391 SALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDA 441
>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Brachypodium distachyon]
Length = 791
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 22/241 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
LYKE + M +G + + N++++ + + R++EAI EME+ C P+ T
Sbjct: 261 ALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTY 320
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++S Y GL++E+ + +E++ GI P V+ Y L++ ++ + D A G +EM
Sbjct: 321 NSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLR 380
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N +IK G+F + M+ VFD++ G+ + +N LL
Sbjct: 381 NGCKPNLCTYNALIKLHGVRGKFPE----MMI--VFDEIRSAGFVPDVVTWNTLLAVFGQ 434
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAISV 225
GL + V E K G PE + L+ S RM E G + IS
Sbjct: 435 NGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDIST 494
Query: 226 W 226
+
Sbjct: 495 Y 495
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 1/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+KE A++ M + G+ + ++N +I R+ ++EA K + EM +P++ TL +
Sbjct: 228 WKEVLALVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNS 287
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L VY A DE+ +E++ G PSV+ Y L++ Y K ++A L +EM
Sbjct: 288 LLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKG 347
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I ++ G D ++++ G + YNAL++ G
Sbjct: 348 IEPDVITYTTLVSG-LDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEM 406
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
V DE G P++ N L+
Sbjct: 407 MIVFDEIRSAGFVPDVVTWNTLL 429
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 11/212 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E + M G+ + ++ ++ + G+ + AI Y EM + C PN T
Sbjct: 331 GLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTY 390
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ ++ G E F EI+S+G +P V+ + LLAV+ ++ + G+ EM
Sbjct: 391 NALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKK 450
Query: 122 N-----RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ R + + ++ G FD Q +E ++ ++ G + YNA+L AL
Sbjct: 451 SGYVPERDTYVSLISSYSRCGLFD-----QAME-IYKRMIEAGIHPDISTYNAVLSALAR 504
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
G E+A ++ E P+ ++ L+ +
Sbjct: 505 GGRWEQAEKLFAEMENLDSRPDELSYSSLLHA 536
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + M +SG D++ ++I ++ + G F++A++ Y M + P+ T
Sbjct: 436 GLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTY 495
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
AVLS G +++++ F E+++ P + Y LL YA + + D L ++++
Sbjct: 496 NAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYA 555
Query: 122 NRI 124
RI
Sbjct: 556 ERI 558
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 65/121 (53%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ K+ + ILS M ES + ++ ++N+++ + + G E+ E++ R P+ +
Sbjct: 611 GMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSY 670
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G + E+ F E+K SG++P ++ Y + + Y ++ +++A L+ M T
Sbjct: 671 NTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVT 730
Query: 122 N 122
+
Sbjct: 731 H 731
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 16/222 (7%)
Query: 11 LSRMSESGVARNSDSFNAVIEAF----RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
+ +SE A +S N +++ + + KA++E+ + RC + L A++S
Sbjct: 546 MKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMIS 605
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+Y G+V + +E +K S I S Y L+ +Y++ + +L E+ ++R
Sbjct: 606 IYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARP 665
Query: 127 IHQVTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
MI KG+ + S +F ++ C G + YN +++ + E
Sbjct: 666 DRYSYNTMIYAYGRKGQMKEASR------LFSEMKCSGLVPDIVTYNIFVKSYVANSMFE 719
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVH-RMWEGGAYTA 222
A ++ G P +N ++ H R+ +G ++ +
Sbjct: 720 EAIDLVRYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFIS 761
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + S M SG+ + ++N ++++ FEEAI M C PNERT
Sbjct: 681 GQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTY 740
Query: 62 EAVLSVYCFAGLVDESK 78
+L YC G + + K
Sbjct: 741 NTILQEYCSHGRIADGK 757
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++C+ IL+ + S + S+N +I A+ + G+ +EA + + EM+ P+ T
Sbjct: 649 EKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIF 708
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL---LDEMH 120
+ Y + +E+ + + + + G P+ Y +L Y R D L E+H
Sbjct: 709 VKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFISNLPELH 767
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL++M + N S++ VI+ F + GRF+EA+ + EM + + + +LS+Y
Sbjct: 396 ILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYT 455
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +E+ + +E+ S GI V+ Y LL Y K ++D+ + EM +
Sbjct: 456 KVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLL 515
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G + ++ +F + G + Y+AL++AL GL A ++DE
Sbjct: 516 TYSTLIDG-YSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDE 574
Query: 190 ATKRGLFPELFRHNKLV 206
TK G+ P + +N ++
Sbjct: 575 MTKEGISPNVVTYNSII 591
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 12/211 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERT 60
GL++E ++ + M E G+ N ++NAVI+A +GG F++ K + EM++ P+ T
Sbjct: 282 GLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRIT 341
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L+V GL + ++ F E+ + I V Y LL K + D A+ +L +M
Sbjct: 342 FNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMP 401
Query: 121 TNRI-----SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
RI S + G G FD+ N +F ++ G L YN LL
Sbjct: 402 VKRIMPNVVSYSTVIDGFAKAGRFDEALN------LFGEMRYLGIALDRVSYNTLLSIYT 455
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G E A +L E G+ ++ +N L+
Sbjct: 456 KVGRSEEALDILREMASVGIKKDVVTYNALL 486
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 48/278 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAF------------RQGGRF---EEAIKAY 46
GL +++ M++ G++ N ++N++I+AF GG A+ A
Sbjct: 563 GLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSAL 622
Query: 47 VEMEKVR---------CDPNERTLEAVLSVYCFAGLVDES--KEQFQEIKSSGILPSVMC 95
E E R + N RT + C G+ + S E F+++ I P+V+
Sbjct: 623 TETEGNRVIQLFGQLTTESNNRTTKD-----CEEGMQELSCILEVFRKMHQLEIKPNVVT 677
Query: 96 YCMLLAVYAKSNRWDDAYGLLDEMHTNRI--SNIHQVTGQMIKGEFDDESNWQMVEYVFD 153
+ +L ++ N ++DA LL+E+ R+ + ++ V ++ G+ E+ W + +FD
Sbjct: 678 FSAILNACSRCNSFEDASMLLEEL---RLFDNKVYGVVHGLLMGQ--RENVWLQAQSLFD 732
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS---VD 210
K+N FYNAL + LW G + A V E R ++ VWS +D
Sbjct: 733 KVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWEN-------VWSDSCLD 785
Query: 211 VHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
+H M G A + WL + + G +LP++ +++
Sbjct: 786 LHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILT 823
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E IL M+ G+ ++ ++NA++ + + G+++E K + EM++ PN T
Sbjct: 458 GRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTY 517
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y GL E+ E F+E KS+G+ V+ Y L+ K+ A L+DEM
Sbjct: 518 STLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTK 577
Query: 122 NRIS 125
IS
Sbjct: 578 EGIS 581
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 2/207 (0%)
Query: 1 GGL-YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GG+ +K+ M +GV + +FN+++ +GG +E A + EM R + +
Sbjct: 316 GGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVF 375
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ +L C G +D + E ++ I+P+V+ Y ++ +AK+ R+D+A L EM
Sbjct: 376 SYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEM 435
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
I+ + +V+ + + + + ++ G + YNALL G
Sbjct: 436 RYLGIA-LDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGK 494
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ +V E + + P L ++ L+
Sbjct: 495 YDEVKKVFTEMKREHVLPNLLTYSTLI 521
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL-VDESKEQFQE 83
+F+A+I A+ + G EEAI + M++ PN T AV+ G+ + + F E
Sbjct: 270 AFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDE 329
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
++ +G+ P + + LLAV ++ W+ A L DEM RI
Sbjct: 330 MQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRI 370
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 52/109 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y E + + + M V N +++ +I+ + +GG ++EA++ + E + +
Sbjct: 493 GKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLY 552
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110
A++ C GLV + E+ GI P+V+ Y ++ + +S D
Sbjct: 553 SALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMD 601
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGLYKE I +G+ + ++A+I+A + G A+ EM K PN T
Sbjct: 527 GGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVT 586
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ + + +D S + + G LP + + NR +G L
Sbjct: 587 YNSIIDAFGRSATMDRSA----DYSNGGSLP-FSSSALSALTETEGNRVIQLFGQLTTES 641
Query: 121 TNRIS 125
NR +
Sbjct: 642 NNRTT 646
>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63080, mitochondrial; Flags: Precursor
gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 614
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 5/204 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +FN++I+AF + G+ EA K + EM + DPN T
Sbjct: 289 GRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 348
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+++ F + S LP V+ Y L+ + K+ + D L +M
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408
Query: 122 NRISNIHQVTGQMIKGEF--DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +I G F D N QM VF ++ +G + YN LL+ L G
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQM---VFKQMVSDGVHPNIMTYNTLLDGLCKNGK 465
Query: 180 RERAARVLDEATKRGLFPELFRHN 203
E+A V + K + P+++ +N
Sbjct: 466 LEKAMVVFEYLQKSKMEPDIYTYN 489
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM G + ++ AVI + G + A+ +MEK + + + V+
Sbjct: 188 EAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVI 247
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C VD++ F E+ + GI P V Y L++ RW DA LL +M +I
Sbjct: 248 DSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKI- 306
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E E +FD++ + YN+L+ +C+ R + A
Sbjct: 307 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLING-FCMHDRLDEAQ 365
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ + P++ +N L+
Sbjct: 366 QIFTLMVSKDCLPDVVTYNTLI 387
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 57/112 (50%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +M GV N ++N +++ + G+ E+A+ + ++K + +P+ T +
Sbjct: 435 QMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEG 494
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C AG V++ + F + G+ P V+ Y +++ + K ++AY L +M
Sbjct: 495 MCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKM 546
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 11/217 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E A++ +M E G ++ +F ++ Q + EA+ M C P+ T
Sbjct: 148 GNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVT 207
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AV++ C G D + +++ I V+ Y ++ K DDA L EM
Sbjct: 208 YGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMD 267
Query: 121 TNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
I +I G + D S + + + K+N + +N+L++A
Sbjct: 268 NKGIRPDVFTYSSLISCLCNYGRWSDASRL-LSDMLERKINPN-----VVTFNSLIDAFA 321
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
G A ++ DE +R + P + +N L+ +H
Sbjct: 322 KEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 358
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 90/206 (43%), Gaps = 11/206 (5%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E Q I + M + ++N +I F + + + ++ + +M + N T ++
Sbjct: 363 EAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLI 422
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI- 124
+ A D ++ F+++ S G+ P++M Y LL K+ + + A + + + +++
Sbjct: 423 HGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKME 482
Query: 125 SNIHQVT----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I+ G G+ +D W + F L+ +G + YN ++ GL+
Sbjct: 483 PDIYTYNIMSEGMCKAGKVED--GWDL----FCSLSLKGVKPDVIAYNTMISGFCKKGLK 536
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E A + + + G P+ +N L+
Sbjct: 537 EEAYTLFIKMKEDGPLPDSGTYNTLI 562
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 84/203 (41%), Gaps = 11/203 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
AIL +M + G + + N+++ F G R EA+ +M ++ P+ T ++
Sbjct: 121 AILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGL 180
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
E+ + + G P ++ Y ++ K D A LL++M +I
Sbjct: 181 FQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADV 240
Query: 129 QVTGQMIKG-----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +I DD N +F +++ +G + Y++L+ L G A
Sbjct: 241 VIYSTVIDSLCKYRHVDDALN------LFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDA 294
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+R+L + +R + P + N L+
Sbjct: 295 SRLLSDMLERKINPNVVTFNSLI 317
>gi|356577949|ref|XP_003557083.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 700
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 117/272 (43%), Gaps = 37/272 (13%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERT 60
G+YKE M +G+ +D +N ++ G + A + + EM+ C P+ T
Sbjct: 362 GVYKE-------MKGNGMDMTADLYNKLLAMCADVGYTDRAAEIFYEMKSSGTCQPDSWT 414
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-------- 112
+++++Y +G V E++ E+ SG P++ L+ Y K+ R DD
Sbjct: 415 FSSMITMYSRSGKVSEAEGMLNEMIQSGFQPTIFVLTSLVHCYGKAKRTDDVVKVFKQLL 474
Query: 113 -YGLLDEMH--------------------TNRISNIHQVTGQMIKGEFDDESNWQMVEYV 151
G++ H T+ I + G ++K ++E + +
Sbjct: 475 DLGIVPNDHFCCSLLNVLTQTPKEEYGKLTDCIEKANTKLGSVVKYLVEEEGDGDFKKEA 534
Query: 152 FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDV 211
+ LN + M N L++ L + ERA +LD ++P + ++ WS+ +
Sbjct: 535 SEFLNSIDAKVKMPLCNCLIDLCVKLNVPERACDLLDLGLVLEIYPNIQSKSQTQWSLHL 594
Query: 212 HRMWEGGAYTAISVWLNKMYEMFMMGEDLPQL 243
+ G A TA+ VW+N++ + GEDLP L
Sbjct: 595 KELSVGAAMTALHVWINELSKALESGEDLPPL 626
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
++ +F+A+I+ + G +++ +K Y EM+ + PN T +L A ++K +
Sbjct: 270 DAATFSALIKMYSMAGNYDKCLKVYQEMKVLGAKPNVVTYNTLLGAMLKAQKHRQAKAIY 329
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+E+KS+G+ P + Y LL VY ++ ++A G+ EM N
Sbjct: 330 KEMKSNGVSPDFITYACLLEVYTIAHCSEEALGVYKEMKGN 370
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ +AI M +GV+ + ++ ++E + EEA+ Y EM+ D
Sbjct: 322 HRQAKAIYKEMKSNGVSPDFITYACLLEVYTIAHCSEEALGVYKEMKGNGMDMTADLYNK 381
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L++ G D + E F E+KSSG P + ++ +Y++S + +A G+L+EM
Sbjct: 382 LLAMCADVGYTDRAAEIFYEMKSSGTCQPDSWTFSSMITMYSRSGKVSEAEGMLNEM 438
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 79/185 (42%), Gaps = 1/185 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +MS G + + +A++ A+ ++A+ Y + + T A++ +Y
Sbjct: 223 LFEKMSGFGYEPDGITCSAMVYAYALSNNVDKAVSLYDRAIAEKWCLDAATFSALIKMYS 282
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG D+ + +QE+K G P+V+ Y LL K+ + A + EM +N +S
Sbjct: 283 MAGNYDKCLKVYQEMKVLGAKPNVVTYNTLLGAMLKAQKHRQAKAIYKEMKSNGVSPDF- 341
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T + + + V+ ++ G + YN LL +G +RAA + E
Sbjct: 342 ITYACLLEVYTIAHCSEEALGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDRAAEIFYE 401
Query: 190 ATKRG 194
G
Sbjct: 402 MKSSG 406
>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 102/197 (51%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I+S M + N +++ +I+ + + GR ++A+ + EM+ + + + +LSVY
Sbjct: 353 IMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYA 412
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +++ + +E++++GI V+ Y LLA Y K R+D+ + +EM R+S +
Sbjct: 413 KLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSP-NL 471
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T + + ++ VF + G + Y+AL++AL GL E + +LDE
Sbjct: 472 LTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDE 531
Query: 190 ATKRGLFPELFRHNKLV 206
TK G+ P + +N ++
Sbjct: 532 MTKEGIRPNVVTYNSII 548
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 122/279 (43%), Gaps = 44/279 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFE--------------EAIKAYV 47
GL + +L M++ G+ N ++N++I+AF + + E++ + V
Sbjct: 520 GLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQVESLSSIV 579
Query: 48 EMEKVRCDPNERTLEAVLSVYCFAGLVDE-------SKEQ--------FQEIKSSGILPS 92
E + ++ ++ + F L E S +Q FQ++ I P+
Sbjct: 580 VQEAIESQAADKEDNRIIEI--FGKLAAEKACEAKNSGKQEILCILGVFQKMHELKIKPN 637
Query: 93 VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVF 152
V+ + +L ++ + ++DA LL+E+ + ++ V ++ G E+ W + +F
Sbjct: 638 VVTFSAILNACSRCDSFEDASMLLEELRLFD-NQVYGVAHGLLMGY--RENVWLQAQSLF 694
Query: 153 DKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS---V 209
D++ FYNAL + LW G + A V+ E +R ++ +WS +
Sbjct: 695 DEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWEN-------IWSDSCL 747
Query: 210 DVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
D+H M G A + WL + + G +LP+L +++
Sbjct: 748 DLHLMSSGAARAMVHAWLLNIRSIVFEGHELPKLLSILT 786
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 63/118 (53%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + M +G+ ++ ++NA++ + + R++E + + EM++ R PN T
Sbjct: 415 GRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTY 474
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ VY GL E+ E F+E K +G+ V+ Y L+ K+ + + LLDEM
Sbjct: 475 STLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEM 532
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 7/221 (3%)
Query: 1 GGL-YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GG+ +K+ I M +GV + +FN+++ +GG +E A + + M D +
Sbjct: 273 GGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIF 332
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T +L C G +D + E E+ + ILP+V+ Y ++ YAK R DDA + +EM
Sbjct: 333 TYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEM 392
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + +V+ + + ++ V ++ G + YNALL
Sbjct: 393 KFLGV-GLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYR 451
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
+ RV +E + + P L ++ L +DV+ +GG Y
Sbjct: 452 YDEVRRVFEEMKRGRVSPNLLTYSTL---IDVYS--KGGLY 487
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y E + + M V+ N +++ +I+ + +GG ++EA++ + E ++ + A
Sbjct: 452 YDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSA 511
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD---DAYGLLDEMH 120
++ C GLV+ S E+ GI P+V+ Y ++ + +S D G +
Sbjct: 512 LIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQ 571
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158
+S+I V + I+ + D+ + +++E +F KL E
Sbjct: 572 VESLSSI--VVQEAIESQAADKEDNRIIE-IFGKLAAE 606
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 93/241 (38%), Gaps = 47/241 (19%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-------------------- 46
+A+ + G + +F+A+I A+ + G EAIK +
Sbjct: 209 AKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVID 268
Query: 47 ------VEMEKV----------RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGIL 90
VE +KV P+ T ++L+V GL + ++ F + GI
Sbjct: 269 ACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGID 328
Query: 91 PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRISNIHQVTGQMIKGEFDDESNW 145
+ Y LL K + D A+ ++ EM T N ++ + G G DD N
Sbjct: 329 QDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALN- 387
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+F+++ G GL YN LL LG E+A V E G+ ++ +N L
Sbjct: 388 -----MFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNAL 442
Query: 206 V 206
+
Sbjct: 443 L 443
>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
Length = 695
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 113/250 (45%), Gaps = 14/250 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + ++S M +SG A + ++NA+I F + GR E+A + EM++ N T
Sbjct: 249 GDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTF 308
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
+ +C GLV E+ + F +++ G++P+ Y L+ K+ R DDA LLDEM H
Sbjct: 309 STFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVH 368
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ N+ VT ++ E + V + G Y L+ +
Sbjct: 369 QGLVPNV--VTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNS 426
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVW------SVD-----VHRMWEGGAYTAISVWLNK 229
ERA +L++ +G+ ++ + L+W VD +H+M G ++
Sbjct: 427 ERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTI 486
Query: 230 MYEMFMMGED 239
M +F G++
Sbjct: 487 MDALFKAGKE 496
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 92/201 (45%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +++L +M+ G+ N+ + +++A + G+ EA+ ++ PN T A++
Sbjct: 463 EAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALI 522
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C AG + E+ F +++ G+ P+V Y L+ + K + A L++EM +S
Sbjct: 523 DGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMS 582
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V +I G + ++N Q + K+ G L + Y + + + + A
Sbjct: 583 LDKVVYTSLIDG-YMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARG 641
Query: 186 VLDEATKRGLFPELFRHNKLV 206
VL E G+ P+ +N L+
Sbjct: 642 VLSEMIGTGITPDKTVYNCLI 662
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 15/215 (6%)
Query: 5 KECQAILSRMS---ESGVAR---------NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV 52
+ C IL R++ + G+ R N +FN VI+ + G EA +V M+ +
Sbjct: 170 RTCNHILLRLARNRQGGLVRRLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAM 229
Query: 53 RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
C P+ T +++ Y G ++E ++ E++ SG V+ Y L+ ++K R + A
Sbjct: 230 GCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKA 289
Query: 113 YGLLDEM-HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
Y EM ++N+ VT F E Q +F ++ G Y +L+
Sbjct: 290 YSYFGEMKRQGVVANV--VTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLV 347
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ G + A +LDE +GL P + + +V
Sbjct: 348 DGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMV 382
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 96/232 (41%), Gaps = 6/232 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E + ++M G+ N ++ ++++ + GR ++AI EM PN T
Sbjct: 319 GLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTY 378
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G V E+ ++ G+ + + Y L+ + +N + A LL++M
Sbjct: 379 TVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKN 438
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + G +I G D+ + + C G Y +++AL+ G
Sbjct: 439 KGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGC-GLRPNTVIYTTIMDALFKAGKES 497
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
A +L + G F+ N + + + + + G+ + NKM E+
Sbjct: 498 EAVALLHKILDSG-----FQPNVVTYCALIDGLCKAGSISEAISHFNKMREL 544
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E A+L ++ +SG N ++ A+I+ + G EAI + +M ++ DPN +
Sbjct: 493 AGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQA 552
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ +C G ++++ E+ G+ + Y L+ Y K DA+ L +M
Sbjct: 553 YTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKM 611
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 1/209 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + +M + GV N+ ++N +I + G++EE ++ EM +P+ T +L
Sbjct: 385 EGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDY 444
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G +E++ F + GI PSV Y ++L Y K + + LL+ M N IS
Sbjct: 445 LCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPN 504
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
H++ +I + + V ++F K+ +G + Y L++AL LG + A
Sbjct: 505 HRIFNTVICA-YAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQF 563
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWE 216
++ G+ P N LV+ + WE
Sbjct: 564 NQMINEGVTPNNVVFNSLVYGLCTVDKWE 592
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L+ M +G++ N FN VI A+ + +E + +++M++ PN T
Sbjct: 484 GALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTY 543
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G VD++ QF ++ + G+ P+ + + L+ ++W+ L EM
Sbjct: 544 GTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLN 603
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
I V + E + D + C G + YN L++ C R
Sbjct: 604 QGIRP-DIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDG-HCFASRM 661
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A ++LD GL P + +N L+
Sbjct: 662 DEAVKLLDGMVSAGLKPNIVSYNTLL 687
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 7/204 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + ++ M G+ + S+N +I+ R +EA+K M PN +
Sbjct: 624 GRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSY 683
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L YC AG +D + F+E+ G+ P V Y +L +S R+ +A E++
Sbjct: 684 NTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAR----ELYV 739
Query: 122 NRISNIHQ---VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
N I + T +I F + + +F L L + +N +++ L+ G
Sbjct: 740 NMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGG 799
Query: 179 LRERAARVLDEATKRGLFPELFRH 202
+E A + GL P + +
Sbjct: 800 RKEDAMDLFAAIPANGLVPSVVTY 823
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 9/213 (4%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E GV+ + ++N +I+ + + A + +M + PN T ++ C A VD
Sbjct: 218 EMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVD 277
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
++ FQ++ G+ PS + Y ++ K+ D A G+ +M + H +I
Sbjct: 278 MAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTII 337
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
G ++ E VF ++ +G Y +++ L +RA V + +G+
Sbjct: 338 DGLCKAQA-IDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGV 396
Query: 196 FPELFRHNKLV--------WSVDVHRMWEGGAY 220
P +N L+ W V R+ E A+
Sbjct: 397 KPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAH 429
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + FN V+ + GR EA + M + P+ + ++ +CFA
Sbjct: 601 MLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASR 660
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+DE+ + + S+G+ P+++ Y LL Y K+ R D+AY L EM ++ +
Sbjct: 661 MDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNT 720
Query: 134 MIKGEF 139
++ G F
Sbjct: 721 ILNGLF 726
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 83/191 (43%), Gaps = 4/191 (2%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
+S + + S+N VI F G+ ++A ++EM P+ T ++ C A VD
Sbjct: 186 DSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEMG---VSPDVVTYNTIIDGLCKAQEVD 242
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
+++ FQ++ G+ P+ + Y ++ K+ D A G+ +M + + +I
Sbjct: 243 RAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTII 302
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
G ++ E VF ++ G YN +++ L ++A V + +G+
Sbjct: 303 DGLCKAQA-VDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGV 361
Query: 196 FPELFRHNKLV 206
P+ + ++
Sbjct: 362 KPDNLTYTIII 372
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 52/112 (46%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + +M + GV + ++N +I+ + ++A + +M P+ T ++
Sbjct: 315 EGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDG 374
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C A VD ++ FQ++ G+ P+ Y L+ Y + +W++ + EM
Sbjct: 375 LCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEM 426
>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 11/213 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + M + G + + N + + R+ + EEA + + M + PN +
Sbjct: 120 GLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSY 179
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +YC G E+K+ FQE+K +G P+ + Y +L+ ++K R +AY L DEM
Sbjct: 180 TTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRA 239
Query: 122 NRI-SNIHQVT----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
I +I+ T G+ I G+ DD VE +F+++ +G L + Y A++ L
Sbjct: 240 KGIFPDIYTYTSLLHGECIFGKLDD-----AVE-LFNEVRQKGLPLNVVTYTAIISGLSK 293
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
G E A ++ DE T+ GL P+ + LV S+
Sbjct: 294 EGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSL 326
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 72/139 (51%), Gaps = 11/139 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + + M ++G N+ ++N +I+ + GR +EA + EM P+ T
Sbjct: 190 GNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTY 249
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
++L C G +D++ E F E++ G+ +V+ Y +++ +K R ++A+ L DEM
Sbjct: 250 TSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTE 309
Query: 120 ---------HTNRISNIHQ 129
+T+ +S++H+
Sbjct: 310 AGLTPDDRVYTSLVSSLHK 328
>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
Length = 600
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 91/197 (46%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + +G + N ++ AVI+ + GR E+ +K + EM C P T V+ C
Sbjct: 130 LFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLC 189
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A ++ ++ + F+++ G +P + Y L+ ++K+++ D+A LLD M T
Sbjct: 190 KAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAV 249
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
G ++ G F + V ++ G G+ + +LL G E A +VL E
Sbjct: 250 TYGSIVHG-FCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTE 308
Query: 190 ATKRGLFPELFRHNKLV 206
T RG P++ + L+
Sbjct: 309 MTARGCAPDVILYTSLI 325
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 85/208 (40%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L+ M+ G A + + ++I+ GR EA + M + C P+ T
Sbjct: 297 GRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTY 356
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + G V+ + E + + SG+ P Y L+ Y K R D A+G+ D M
Sbjct: 357 GTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVA 416
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I ++ G F D + + L E + Y L++ L G
Sbjct: 417 SGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVS 476
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
A E RG+ PE + L++S+
Sbjct: 477 EAFLQFQEMIDRGIIPECHTYTSLIYSL 504
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 4/145 (2%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLEAVLSV 67
+ RM SG+ N+ +FN ++ + G+ + A + EM EK P + ++
Sbjct: 409 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDG 468
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
AG V E+ QFQE+ GI+P Y L+ AK+ R +A L+++M ++
Sbjct: 469 LGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPD 528
Query: 128 HQVTGQMIKGEFDD---ESNWQMVE 149
Q +I G D ++ W + +
Sbjct: 529 VQAYSALITGLIDSSMVDTAWDVFQ 553
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 90/213 (42%), Gaps = 6/213 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +L M G + ++ +++ F + EA + +M + C+P ++L
Sbjct: 231 EARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLL 290
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S Y G +E+ + E+ + G P V+ Y L+ + + R +A + D M +
Sbjct: 291 SYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCA 350
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G +I+ F N + + + + G G YN+L++ L ++A
Sbjct: 351 PDALTYGTIIQ-NFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFG 409
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
V D G+ P N + ++V +H +++ G
Sbjct: 410 VYDRMVASGIKP-----NAVTFNVLMHGLFKDG 437
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 49/98 (50%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G+ ++ ++I + + GR EA K +M K+ +P+ + A+++ + +
Sbjct: 485 MIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSM 544
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111
VD + + FQE+ G P+ + Y +L + + R D
Sbjct: 545 VDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALD 582
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+ +I+ + GR EA + EM P T +++ AG + E+K+ +++
Sbjct: 461 SYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDM 520
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G+ P V Y L+ S+ D A+ + EM
Sbjct: 521 VKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEM 555
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +F+A+I+AF + G+ EA K Y EM K DP+ T
Sbjct: 307 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 366
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+K F+ + S P+V+ Y L+ + K+ R ++ L EM
Sbjct: 367 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQ 426
Query: 122 NRISNIHQVTGQMIKGEFD--DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +I G F D N QM VF ++ G + YN LL+ L G
Sbjct: 427 RGLVGNTVTYTTLIHGFFQARDCDNAQM---VFKQMVSVGVHPNILTYNILLDGLCKNGK 483
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+A V + + + P+++ +N ++
Sbjct: 484 LAKAMVVFEYLQRSTMEPDIYTYNIMI 510
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ +M + G + ++ V+ + G + A+ +MEK + + + ++
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTII 265
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C +D++ F E+ + GI P V Y L++ RW DA LL +M +I
Sbjct: 266 DGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKI- 324
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E E ++D++ + Y++L+ +C+ R + A
Sbjct: 325 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING-FCMHDRLDEAK 383
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ + + FP + ++ L+
Sbjct: 384 HMFELMISKDCFPNVVTYSTLI 405
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 100/242 (41%), Gaps = 20/242 (8%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ +M E G ++ +F +I + EA+ +M + C P+ T V++
Sbjct: 174 ALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGL 233
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G +D + ++++ I V+ Y ++ K DDA L EM I
Sbjct: 234 CKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDV 293
Query: 129 QVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+I G + D S + + + K+N + ++AL++A G A
Sbjct: 294 FTYSSLISCLCNYGRWSDASRL-LSDMIERKINPN-----VVTFSALIDAFVKEGKLVEA 347
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQL 243
++ DE KR + P++F ++ L+ +H + + M+E+ + + P +
Sbjct: 348 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH---------MFELMISKDCFPNV 398
Query: 244 AT 245
T
Sbjct: 399 VT 400
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +IE + G+ E+ + + + PN ++S +C G +E+ +++
Sbjct: 505 TYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----NRISNIHQVTGQMIKGEFD 140
K G LP+ Y L+ + + + L+ EM + S I VT + G D
Sbjct: 565 KEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLD 624
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ ++ +G + N ++ AVI+ + GR E+ +K + +M C P T V+ C
Sbjct: 385 LFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLC 444
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A ++ ++ + F+++ G +P + Y L+ ++K+++ D+A LLD M T
Sbjct: 445 KAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAV 504
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
G ++ G F + V ++ G G+ + +LL G E A +VL E
Sbjct: 505 TYGSIVHG-FCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTE 563
Query: 190 ATKRGLFPELFRHNKLV 206
T RG P++ + L+
Sbjct: 564 MTARGCAPDVILYTSLI 580
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 85/208 (40%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L+ M+ G A + + ++I+ GR EA + M + C P+ T
Sbjct: 552 GRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTY 611
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + G V+ + E + + SG+ P Y L+ Y K R D A+G+ D M
Sbjct: 612 GTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVA 671
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I ++ G F D + + L + + Y L++ L G
Sbjct: 672 SGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVS 731
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
A E RG+ PE + L++S+
Sbjct: 732 EAFSQFQEMIDRGIIPECHTYTSLIYSL 759
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 3/190 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + RM +SG + +F +IEA G+ +EA + Y EM + +P
Sbjct: 173 GRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQ 232
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
++++ C AG VDE+ E +Q + + + S + Y L+ Y K R DD LL +M
Sbjct: 233 DSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVE 292
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +I T ++ F + +F L+ G Y +++ L+
Sbjct: 293 CDNFPDIQ--TYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRM 350
Query: 181 ERAARVLDEA 190
E A DEA
Sbjct: 351 EEAKAFFDEA 360
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLEAVLSV 67
+ RM SG+ N+ +FN ++ + G+ + A + EM EK P + ++
Sbjct: 664 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDG 723
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
AG V E+ QFQE+ GI+P Y L+ AK+ R +A L+++M ++
Sbjct: 724 LGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPD 783
Query: 128 HQVTGQMIKGEFD 140
Q +I G D
Sbjct: 784 VQAYSALITGLID 796
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 90/213 (42%), Gaps = 6/213 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +L M G + ++ +++ F + EA + +M + C+P ++L
Sbjct: 486 EARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLL 545
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S Y G +E+ + E+ + G P V+ Y L+ + + R +A + D M +
Sbjct: 546 SYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCA 605
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G +I+ F N + + + + G G YN+L++ L ++A
Sbjct: 606 PDALTYGTIIQ-NFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFG 664
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
V D G+ P N + ++V +H +++ G
Sbjct: 665 VYDRMVASGIKP-----NAVTFNVLMHGLFKDG 692
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 9/185 (4%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+ +VI + + G + K EM C P+ ++ C G VDE+ E F+ ++
Sbjct: 127 YTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMR 186
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI----KGEFDD 141
SG L + + L+ + + D+A L EM +V +I K D
Sbjct: 187 KSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVD 246
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
E+N ++ + + YN+L++ LG + ++L + + FP++
Sbjct: 247 EANE-----IYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQT 301
Query: 202 HNKLV 206
+N LV
Sbjct: 302 YNILV 306
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 40 EEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99
EEA+ EM P+ VL+ C A +D++ E F E+ S G P+++ Y +
Sbjct: 2 EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTV 61
Query: 100 LAVYAKSNRWDDAYGLLDEMHTN 122
++ A ++ D+AY + M N
Sbjct: 62 ISGLASIDKMDEAYKFFNSMIDN 84
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 53/108 (49%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L M +G+ + + N V+ + + ++AI+ ++EM + C+P + V+S
Sbjct: 8 LKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLAS 67
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+DE+ + F + +G P V+ + L+ + K+ + + LL++
Sbjct: 68 IDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQ 115
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 52/111 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + M + G+ ++ ++I + + GR EA K +M K+ +P+ +
Sbjct: 727 AGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQA 786
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111
A+++ + +VD + + FQE+ G P+ + Y +L + + R D
Sbjct: 787 YSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALD 837
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+ +I+ + GR EA + EM P T +++ AG + E+K+ +++
Sbjct: 716 SYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDM 775
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF 139
G+ P V Y L+ S+ D A+ + EM R ++VT ++++ F
Sbjct: 776 VKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEM-MKRGCAPNEVTYKVLRRGF 829
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 16/219 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL M +G ++ ++ +I+ + GR +EA + + M K C + T ++
Sbjct: 146 ILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALS 205
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD-----EMHTNRI 124
G +DE+ E ++E+ G P + L+ K+ + D+A + ++ T+R+
Sbjct: 206 NHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRV 265
Query: 125 SNIHQVTGQMIKGEFDDESN--WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ + G G DD QMVE C+ + ++ YN L+ +
Sbjct: 266 AYNSLMDGYCKLGRVDDGLKLLLQMVE-------CDNFP-DIQTYNILVAGFSRANRLDD 317
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSV-DVHRMWEGGAY 220
A + + G P + ++ + D RM E A+
Sbjct: 318 ALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAF 356
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +FNA+I+AF + G+F EA K + +M K DP+ T
Sbjct: 233 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY 292
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +D++K+ F+ + S P + Y L+ + KS R +D L EM
Sbjct: 293 NSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSH 352
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F D + + VF ++ +G + Y+ LL+ L G E
Sbjct: 353 RGLVGDTVTYTTLIQGLFHD-GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 411
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V D K + +++ + ++
Sbjct: 412 KALEVFDYMQKSEIKLDIYIYTTMI 436
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM + G N ++ V+ + G + A +ME + + + ++
Sbjct: 132 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTII 191
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C VD++ F+E+++ GI P+V+ Y L++ RW DA LL +M +I
Sbjct: 192 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI- 250
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E + E + D + + YN+L+ +C+ R ++A
Sbjct: 251 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLING-FCMHDRLDKAK 309
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ + + FP+L +N L+
Sbjct: 310 QMFEFMVSKDCFPDLDTYNTLI 331
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 22/243 (9%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ +M E G ++ +F +I + EA+ M + C PN T V++
Sbjct: 100 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 159
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G +D + +++++ I V+ + ++ K DDA L EM T I
Sbjct: 160 CKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 219
Query: 129 QVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+I G + D S + + + K+N + +NAL++A G A
Sbjct: 220 VTYSSLISCLCSYGRWSDASQL-LSDMIEKKINPN-----LVTFNALIDAFVKEGKFVEA 273
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED-LPQ 242
++ D+ KR + P++F +N L+ +H + +M+E FM+ +D P
Sbjct: 274 EKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKA---------KQMFE-FMVSKDCFPD 323
Query: 243 LAT 245
L T
Sbjct: 324 LDT 326
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/154 (18%), Positives = 64/154 (41%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +M GV + +++ +++ G+ E+A++ + M+K + ++
Sbjct: 379 QKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 438
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C AG VD+ + F + G+ P+V+ Y +++ +AY LL +M +
Sbjct: 439 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPD 498
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
+I+ D E + + +C G
Sbjct: 499 SGTYNTLIRAHLRDGDKAASAELIREMRSCRFVG 532
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 1/199 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M G+ N ++N++I G+ +EA+ +M + PN T A+++
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+C ++ E++E +I G+ P+V+ + L+ Y K+ R DDA+ L M +
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPN 438
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+I G F E N + + ++ G + YN L++AL G +A R+L
Sbjct: 439 VSTYNCLIVG-FCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLL 497
Query: 188 DEATKRGLFPELFRHNKLV 206
DE + GL P +N L+
Sbjct: 498 DEMFEVGLNPSHLTYNALI 516
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 6/216 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ KE + +L + + G+A N +FN +I+A+ + GR ++A M PN T
Sbjct: 384 MLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYN 443
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ +C G V E+++ +E++ +G+ ++ Y +L+ K A LLDEM
Sbjct: 444 CLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEV 503
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
++ H +I G F E N V + +G + YN L++ G E
Sbjct: 504 GLNPSHLTYNALIDGYF-REGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEE 562
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A R+L+E ++GL P N+ + + M E G
Sbjct: 563 ANRLLNEMLEKGLIP-----NRTTYDILRDEMMEKG 593
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 1/194 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
R + G ++ S N ++ + + GR Y EM + R N T + V++ C G
Sbjct: 184 RAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVG 243
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++ + +++K+ G PSV+ Y ++ Y K+ + A LL EM RI + +++T
Sbjct: 244 KFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRI-HPNEITF 302
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ F + N + VF+++ +G + YN+L+ L G + A + D+ +
Sbjct: 303 NILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSG 362
Query: 193 RGLFPELFRHNKLV 206
GL P + +N L+
Sbjct: 363 MGLKPNVVTYNALI 376
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 87/209 (41%), Gaps = 44/209 (21%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ ++ M G + + ++N +I+ + + G+ +A EM R PNE T
Sbjct: 243 GKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITF 302
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C V +K+ F+E++ G+ P+V+ Y L+ + + D+A GL D+M
Sbjct: 303 NILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMS- 361
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR----FYNALLEALWCL 177
G+G++ YNAL+
Sbjct: 362 ---------------------------------------GMGLKPNVVTYNALINGFCKK 382
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
+ + A +LD+ KRGL P + N L+
Sbjct: 383 KMLKEAREMLDDIGKRGLAPNVITFNTLI 411
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +L M E G+ + ++NA+I+ + + G A+ MEK N T
Sbjct: 488 GETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTY 547
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99
++ +C G ++E+ E+ G++P+ Y +L
Sbjct: 548 NVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 585
>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
Length = 694
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 114/250 (45%), Gaps = 14/250 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + ++S M +SG A + ++NA+I F + G E+A + EM+++ N TL
Sbjct: 248 GELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTL 307
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
+ +C GLV E+ + F +++ G++P+ Y L+ K+ R DDA LLDEM H
Sbjct: 308 STFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVH 367
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ N+ VT ++ E + + V + G Y L+ +
Sbjct: 368 QGLVPNV--VTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNS 425
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAISVWLNK 229
ERA +L+E +G+ ++ + L+W + +H+M + G ++
Sbjct: 426 ERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTI 485
Query: 230 MYEMFMMGED 239
M F G++
Sbjct: 486 MDAFFKAGKE 495
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 90/201 (44%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +++L +M + G+ N+ + +++AF + G+ EA+ ++ PN T A++
Sbjct: 462 EAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALI 521
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C AG + E+ F +++ G+ P+V Y L+ + K A L++EM +S
Sbjct: 522 DGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMS 581
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V +I G + + Q + K+ G L + Y + + + + A
Sbjct: 582 LDKVVYTSLIDGHM-KQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARG 640
Query: 186 VLDEATKRGLFPELFRHNKLV 206
VL E G+ P+ +N L+
Sbjct: 641 VLSEMIGTGITPDKTAYNCLI 661
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 3/199 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ R+ E A N +FN VI+ + G EA +V M+ + C P+ T +++ Y
Sbjct: 185 GLVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGY 244
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNI 127
G ++E + E++ SG V+ Y L+ ++K + AY EM ++N+
Sbjct: 245 GKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANV 304
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
VT F E + +F ++ G Y +L++ G + A +L
Sbjct: 305 --VTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLL 362
Query: 188 DEATKRGLFPELFRHNKLV 206
DE +GL P + + +V
Sbjct: 363 DEMVHQGLVPNVVTYTVMV 381
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E A+L ++ +SG+ N ++ A+I+ + G EAI + +M ++ DPN +
Sbjct: 492 AGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQV 551
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +C G + ++ E+ G+ + Y L+ + K A+ L +M
Sbjct: 552 YTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKM 610
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 68/164 (41%), Gaps = 1/164 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M G+ + + +I + + +EA +M+ PN ++ +
Sbjct: 431 LLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFF 490
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG E+ +I SG+ P+V+ YC L+ K+ +A D+M + Q
Sbjct: 491 KAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQ 550
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
V +I G F + ++ +++ +G L Y +L++
Sbjct: 551 VYTTLIDG-FCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDG 593
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E +L M E G+ +S S+N +I A + G+ EE K EM + P+ T
Sbjct: 455 AGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYT 514
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L C G ++E+ + E K +G P Y +++ Y K+NR ++ L EM
Sbjct: 515 YNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMV 574
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T +I V G +I+ + + N + + D + G Y++L+ L +GL
Sbjct: 575 TMKIEQNAVVYGTLIRA-YCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLV 633
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A ++LDE K GL P + + L+
Sbjct: 634 DSANQLLDEMRKEGLSPNVVCYTALI 659
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 1/181 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M GV + F+ ++ AF GGR ++AI+ + +MEKV PN T ++ C G
Sbjct: 188 MCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGR 247
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+DE+ + ++++ + PS++ Y +L+ K R+D+A +L EM + + V
Sbjct: 248 LDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNT 307
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G + N + D + G N+L++ E A +L+E
Sbjct: 308 LIDG-YCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTG 366
Query: 194 G 194
G
Sbjct: 367 G 367
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 90/201 (44%), Gaps = 9/201 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ S ++ G+ + + N ++ + + + + + + M P+ +++ +C
Sbjct: 149 LFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFC 208
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VD++ E F++++ G+ P+V+ Y ++ K+ R D+A+ ++M R+
Sbjct: 209 TGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLV 268
Query: 130 VTGQMIKG----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G +I G E DE+N + +++ GY YN L++ +G A +
Sbjct: 269 TYGVLINGLVKLERFDEANC-----ILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQ 323
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ D+ G+ P N L+
Sbjct: 324 IRDDMISNGISPNSVTCNSLI 344
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 11/196 (5%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + + M + +N+ + +I A+ + G EA + +M T ++
Sbjct: 564 EEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSL 623
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----- 119
+ GLVD + + E++ G+ P+V+CY L+ Y K + +L EM
Sbjct: 624 IHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNV 683
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
H N+I+ + G G N + + +++ +G YNAL G
Sbjct: 684 HPNKITYTIMINGHCKLG------NMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGK 737
Query: 180 RERAARVLDEATKRGL 195
E A +V D + G+
Sbjct: 738 MEEALKVCDLMSTGGI 753
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 101/228 (44%), Gaps = 9/228 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + +M + GVA N ++N +I + GR +EA + +MEK R P+ T
Sbjct: 210 GGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVT 269
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ DE+ +E+ G P+ + Y L+ Y + A + D+M
Sbjct: 270 YGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMI 329
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+N IS +I+G + + + E++ +++ G + + +++ L CL R
Sbjct: 330 SNGISPNSVTCNSLIQG-YCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRL-CLKCR 387
Query: 181 -ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYT-AISVW 226
+ A + E R F+ N + ++ V + + G + AI +W
Sbjct: 388 FDSALLFIMEMLLRN-----FKPNDGLLTLLVSGLCQNGKQSEAIELW 430
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +L M + G++ N + A+I + + G+ + EM PN+ T
Sbjct: 631 GLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITY 690
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C G + + + E+ GI+P + Y L + K + ++A + D M T
Sbjct: 691 TIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMST 750
Query: 122 NRIS 125
IS
Sbjct: 751 GGIS 754
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 1/160 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + S +++++I G + A + EM K PN A++ YC G
Sbjct: 608 MRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQ 667
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ + QE+ + + P+ + Y +++ + K A LL+EM I VT
Sbjct: 668 MHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVP-DAVTYN 726
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
+ F E + V D ++ G L Y L++
Sbjct: 727 ALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDG 766
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 11/204 (5%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ +L M G N +F +VI RF+ A+ +EM PN+ L ++S
Sbjct: 357 EHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSG 416
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TN 122
C G E+ E + + G + + L+ ++ ++A LL EM +
Sbjct: 417 LCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLD 476
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
IS + +G+ E +++ E + + G M YN LL L +G E
Sbjct: 477 SISYNTLILACCKEGKV--EEGFKLKEEMVRR----GIQPDMYTYNMLLHGLCNMGKIEE 530
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A + E K G FP+ + + ++
Sbjct: 531 AGGLWHECKKNGNFPDAYTYGIMI 554
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 1/209 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + +M + GV ++D++N +I + G+++E ++ EM P+ T ++L+
Sbjct: 258 EGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNY 317
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G E++ F + GI P+V Y +L+ YA + + LL+ M N +S
Sbjct: 318 LCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPD 377
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
H + +I + ++ ++F+K+ +G + Y AL++AL LG + A
Sbjct: 378 HHIF-NIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKF 436
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWE 216
++ G+ P +F N LV+ + WE
Sbjct: 437 NQMMNEGVAPNIFVFNSLVYGLCTVDKWE 465
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 14/233 (6%)
Query: 7 CQA---ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---CDPNERT 60
C+A ++ RM E G + S+N +++ F R EEA++ M + C PN +
Sbjct: 146 CEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVS 205
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ + G VD++ F E+ GI P+V+ Y ++ K+ D A G+ +M
Sbjct: 206 YAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMI 265
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + +I G + W+ V + ++++ G Y +LL L C R
Sbjct: 266 DKGVKPDNDTYNCLIHG-YLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYL-CNNGR 323
Query: 181 ERAARVL-DEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
R AR L D ++G+ P N ++ + +H GA + + LN M E
Sbjct: 324 CREARFLFDSMIRKGIKP-----NVAIYGILIHGYATKGALSEMHDLLNLMVE 371
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 17/209 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + Q ++ M G S+ +I GR +EA K+ M V P+E T
Sbjct: 497 GQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTY 556
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L YC AG +D++ F+E+ +GI P V+ Y +L + R+ +A E++
Sbjct: 557 NTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEA----KELYL 612
Query: 122 NRISNIHQ--------VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
N I++ Q + + K DE+ +F L + + L + +N ++ A
Sbjct: 613 NMITSGKQWNIWIYNIILNGLSKNNCVDEA-----FKLFQSLCSKDFQLEITTFNIMIGA 667
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRH 202
L+ G E A + + GL P++F +
Sbjct: 668 LFKSGRNEDAMHLFATISSYGLVPDVFTY 696
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 84/205 (40%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + M G+ N + +I + G E M + P+
Sbjct: 322 GRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIF 381
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ + Y ++DE+ F ++K G+ P V+ Y L+ K R DDA ++M
Sbjct: 382 NIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMN 441
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ V ++ G + + E+ F+ LN +G + F+N +L L G
Sbjct: 442 EGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLN-QGIRPDVVFFNTILCNLCTKGQVM 500
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A R++D + G P + + L+
Sbjct: 501 KAQRLIDLMERVGTRPGVISYTTLI 525
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L+ M E+G++ + FN + A+ + +EA+ + +M++ P+
Sbjct: 357 GALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNY 416
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C G VD++ +F ++ + G+ P++ + L+ ++W+ A EM
Sbjct: 417 GALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLN 476
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I V I + + + D + G G+ Y L+ +G +
Sbjct: 477 QGIRP-DVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRID 535
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
AA+ LD GL P+ + +N L+
Sbjct: 536 EAAKSLDVMLSVGLKPDEWTYNTLL 560
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 4/197 (2%)
Query: 5 KECQAILSRMSES---GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
+E +L M++S N S+ VI F G+ ++A ++EM PN T
Sbjct: 182 EEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTY 241
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ C A +VD ++ FQ++ G+ P Y L+ Y +W + +L+EM
Sbjct: 242 TTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSA 301
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + G ++ + + ++FD + +G + Y L+ G
Sbjct: 302 HGLKPDCYTYGSLLN-YLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALS 360
Query: 182 RAARVLDEATKRGLFPE 198
+L+ + GL P+
Sbjct: 361 EMHDLLNLMVENGLSPD 377
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 109/241 (45%), Gaps = 36/241 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL++ +++ M G+ ++ ++N +++A +GG+ + A + EM PN T
Sbjct: 196 GGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVT 255
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y AG +D+++ F E+K GI + Y LL++YAK R+++A + EM
Sbjct: 256 YSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREME 315
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE---------------------- 158
+ I VT + G + + + +V VF+++
Sbjct: 316 NSGIRK-DVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLY 374
Query: 159 -------------GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
G + Y+AL++AL GL E A +LDE TK G+ P + +N +
Sbjct: 375 REAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSI 434
Query: 206 V 206
+
Sbjct: 435 I 435
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 124/277 (44%), Gaps = 40/277 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAI-----KAYVEMEKVRCDP 56
GL + ++L M++ G+ N ++N++I+AF + E + + ++++ +
Sbjct: 407 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTESVVDDAGQTSELQIDSLSSSA 466
Query: 57 NERTLEAVLS-------VYCFAGLVDESKEQ---------------FQEIKSSGILPSVM 94
E+ +++++ + F L E Q F ++ I P+V+
Sbjct: 467 VEKATKSLVADREDNRIIKIFGQLAAEKAGQAKNSGGQEMMCILGVFHKMHELEIKPNVV 526
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
+ +L ++ N +++A LL+E+ + ++ V ++ G E+ W+ + +FD+
Sbjct: 527 TFSAILNACSRCNSFEEASMLLEELRLFD-NQVYGVAHGLLMGY--RENVWEQAQSLFDE 583
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS---VDV 211
+ FYNAL + LW G + A V+ E +R ++ VWS +D+
Sbjct: 584 VKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWEN-------VWSESCLDL 636
Query: 212 HRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
H M G A + WL + + G ++P+L + VV
Sbjct: 637 HLMSSGAARAMVHAWLLNVRAIVFEGHEVPKLLSKVV 673
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 7/221 (3%)
Query: 1 GGL-YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GG+ +K I M +G+ + +FN+++ +GG +E A EM D +
Sbjct: 160 GGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIF 219
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T +L C G +D + E E+ + ILP+V+ Y ++ YAK+ R DDA L +EM
Sbjct: 220 TYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEM 279
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
IS + +V+ + + ++ V ++ G + YNALL
Sbjct: 280 KFLGIS-LDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYK 338
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
+ +V +E R + P L ++ L +DV+ +GG Y
Sbjct: 339 YDVVRKVFEEMKARHVSPNLLTYSTL---IDVYS--KGGLY 374
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 86/224 (38%), Gaps = 49/224 (21%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK--EQFQ 82
+F+A+I A+ + G EAIK + M+ PN T AV+ C G V+ + E F
Sbjct: 114 AFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDA-CGKGGVEFKRVLEIFD 172
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRW--------------------------------- 109
E+ +G+ P + + LLAV +K W
Sbjct: 173 EMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGG 232
Query: 110 --DDAYGLLDEMHT-----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL 162
D A+ ++ EM N ++ + G G DD N +F+++ G L
Sbjct: 233 QLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARN------LFNEMKFLGISL 286
Query: 163 GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
YN LL LG E A V E G+ ++ +N L+
Sbjct: 287 DRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALL 330
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 72/163 (44%), Gaps = 10/163 (6%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y + + M V+ N +++ +I+ + +GG + EA+ + E +K + A
Sbjct: 339 YDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSA 398
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD---DAYGLLDEMH 120
++ C GLV+ + E+ GI P+V+ Y ++ + + + D G E+
Sbjct: 399 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTESVVDDAGQTSELQ 458
Query: 121 TNRISN--IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
+ +S+ + + T ++ D E N + +F +L E G
Sbjct: 459 IDSLSSSAVEKATKSLVA---DREDN--RIIKIFGQLAAEKAG 496
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +FNA+I+AF + G+F EA K + +M K DP+ T
Sbjct: 234 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY 293
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +D++K+ F+ + S P + Y L+ + KS R +D L EM
Sbjct: 294 NSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSH 353
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F D + + VF ++ +G + Y+ LL+ L G E
Sbjct: 354 RGLVGDTVTYTTLIQGLFHD-GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 412
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V D K + +++ + ++
Sbjct: 413 KALEVFDYMQKSEIKLDIYIYTTMI 437
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM + G N ++ V+ + G + A +ME + + + ++
Sbjct: 133 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTII 192
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C VD++ F+E+++ GI P+V+ Y L++ RW DA LL +M +I
Sbjct: 193 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI- 251
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E + E + D + + YN+L+ +C+ R ++A
Sbjct: 252 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLING-FCMHDRLDKAK 310
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ + + FP+L +N L+
Sbjct: 311 QMFEFMVSKDCFPDLDTYNTLI 332
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 22/243 (9%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ +M E G ++ +F +I + EA+ M + C PN T V++
Sbjct: 101 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 160
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G +D + +++++ I V+ + ++ K DDA L EM T I
Sbjct: 161 CKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 220
Query: 129 QVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+I G + D S + + + K+N + +NAL++A G A
Sbjct: 221 VTYSSLISCLCSYGRWSDASQL-LSDMIEKKINPN-----LVTFNALIDAFVKEGKFVEA 274
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED-LPQ 242
++ D+ KR + P++F +N L+ +H + +M+E FM+ +D P
Sbjct: 275 EKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKA---------KQMFE-FMVSKDCFPD 324
Query: 243 LAT 245
L T
Sbjct: 325 LDT 327
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/154 (18%), Positives = 64/154 (41%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +M GV + +++ +++ G+ E+A++ + M+K + ++
Sbjct: 380 QKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 439
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C AG VD+ + F + G+ P+V+ Y +++ +AY LL +M +
Sbjct: 440 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPD 499
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
+I+ D E + + +C G
Sbjct: 500 SGTYNTLIRAHLRDGDKAASAELIREMRSCRFVG 533
>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
gi|238014984|gb|ACR38527.1| unknown [Zea mays]
gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
Length = 623
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 4/207 (1%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M GVA+++ + N +++ + + A A+ + K P+E + ++ +C A
Sbjct: 257 KMDRFGVAKDTKAMNVLLDTLCKERSVKRARGAFQAL-KGTIPPDESSFNTLVHGWCKAR 315
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIHQVT 131
++ E++E +E++ G PSV Y L+ Y + G+LDEMHT + NI +T
Sbjct: 316 MLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNI--IT 373
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
++ Q FDK+ +G L FYN L+ L G + A V++E
Sbjct: 374 YTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMH 433
Query: 192 KRGLFPELFRHNKLVWSVDVHRMWEGG 218
+ G+ P L N L+ + H + E
Sbjct: 434 RTGISPNLTTFNTLISAACDHSLAENA 460
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ KE + + M G + + ++ +IEA+ F+ EM C PN T
Sbjct: 316 MLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYT 375
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ AG E+ + F ++K G Y L+ + ++ R DA +++EMH
Sbjct: 376 IVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRT 435
Query: 123 RIS 125
IS
Sbjct: 436 GIS 438
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 56/116 (48%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ IL M G N ++ V+ A + GR +EA+ + ++++ C +
Sbjct: 352 FQTVDGILDEMHTKGCTPNIITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNC 411
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ + C AG + ++ +E+ +GI P++ + L++ + ++A LL +M
Sbjct: 412 LIYILCRAGRLQDANFVVEEMHRTGISPNLTTFNTLISAACDHSLAENALKLLVQM 467
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ ++ M +G++ N +FN +I A E A+K V+ME+ C+P+ +T
Sbjct: 419 AGRLQDANFVVEEMHRTGISPNLTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKT 478
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L + C V + I P Y +L+ ++ R + L+EM
Sbjct: 479 YTPLLKLCCRRKWVKTLLFLICHMFRKDITPDFSTYTLLVCWLCRNGRLTQSCLFLEEM 537
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E ++ + G A ++ +N +I + GR ++A EM + PN T
Sbjct: 384 AGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGISPNLTT 443
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRW 109
++S C L + + + +++ P + Y LL + + +W
Sbjct: 444 FNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCR-RKW 491
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + + +F+A+I+AF + G+ EA K Y EM K DP+ T
Sbjct: 100 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 159
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+K+ F+ + S P V+ Y L+ + K R ++ + EM
Sbjct: 160 SSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ 219
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F + M + +F ++ +G + YN LL+ L G E
Sbjct: 220 RGLVGNTVTYNILIQGLF-QAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLE 278
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V + + + P ++ +N ++
Sbjct: 279 KAMVVFEYLQRSKMEPTIYTYNIMI 303
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 94/211 (44%), Gaps = 3/211 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ RM G + ++ V+ + G + A +ME+ + +P ++
Sbjct: 2 ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 61
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +D++ F+E+++ GI P+V+ Y L++ RW DA LL +M +I N
Sbjct: 62 CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI-NPD 120
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVL 187
T + F E E ++D++ + Y++L+ +C+ R + A ++
Sbjct: 121 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLING-FCMHDRLDEAKQMF 179
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+ + FP++ +N L+ ++ E G
Sbjct: 180 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEG 210
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 7/185 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I+ F + R EE ++ + EM + N T ++ AG D ++E F+E+
Sbjct: 193 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 252
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD--- 141
S G+ P++M Y LL K+ + + A + + + +++ MI+G
Sbjct: 253 VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 312
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
E W + F L+ +G + YN ++ G +E A + E + G P
Sbjct: 313 EDGWDL----FCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 368
Query: 202 HNKLV 206
+N L+
Sbjct: 369 YNTLI 373
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 1/191 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + MS+ G+ N+ ++N +I+ Q G + A + + EM PN T +
Sbjct: 208 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 267
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L C G ++++ F+ ++ S + P++ Y +++ K+ + +D + L + +
Sbjct: 268 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV 327
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
MI G F + + + + +F ++ +G YN L+ A G RE +A
Sbjct: 328 KPDVVAYNTMISG-FCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 386
Query: 185 RVLDEATKRGL 195
++ E G
Sbjct: 387 ELIKEMRSCGF 397
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +IE + G+ E+ + + P+ ++S +C G +E+ F+E+
Sbjct: 298 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 357
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----NRISNIHQVTGQMIKGEFD 140
K G LP+ CY L+ + + + L+ EM + S I VT + G D
Sbjct: 358 KEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLD 417
>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
Length = 1035
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 7/217 (3%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ +A+ +M ++GV N D++N +I + G+++E ++ EM PN T
Sbjct: 253 LFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYG 312
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++L+ C G E++ F + GI PSV Y ++L YA + + LL+ M N
Sbjct: 313 SLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVAN 372
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEY---VFDKLNCEGYGLGMRFYNALLEALWCLGL 179
IS H + F + +++ +F+K+ +G Y AL++AL LG
Sbjct: 373 GISPNHHIFNIF----FSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGR 428
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ A ++ G+ P++ + LV+ + WE
Sbjct: 429 VDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWE 465
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L+ M +G++ N FN A+ + G ++A+ + +M + P+ +
Sbjct: 357 GALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSY 416
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C G VD+++ +F ++ + G+ P ++ + L+ ++W+ L EM
Sbjct: 417 GALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLN 476
Query: 122 NRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I NI V I E + + D + C G + YN L++ G
Sbjct: 477 VGIHPNI--VFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTI 534
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A+++L+ GL P+ F +N L+
Sbjct: 535 DEASKLLEGMVSVGLKPDSFSYNTLL 560
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M G+ + ++N ++ Q GRF EA + Y+ M R N T +L+
Sbjct: 812 SLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGL 871
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C + VDE+ + FQ + S G+ +++ + +++ K R +DA L + N +
Sbjct: 872 CKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVP-D 930
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT +++ +E + + + +F + G L R NAL+ L G RA L
Sbjct: 931 VVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAYLS 990
Query: 189 EATKRGLFPELFRHNKLV 206
+ ++ E ++L+
Sbjct: 991 KLDEKNFSLEASTTSELI 1008
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 6/205 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ N FN ++ + GR E + +E + P+ + ++ +C AG
Sbjct: 474 MLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGT 533
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+DE+ + + + S G+ P Y LL Y K+ R D AY +M +N I+
Sbjct: 534 IDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNT 593
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ G F + + E + +N G + YN +L L + A ++ +
Sbjct: 594 ILHGLFQTKRFSEAKELYLNMIN-SGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSK 652
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGG 218
GL + N + +++ + + +GG
Sbjct: 653 GL-----QLNIITFNIMIGALLKGG 672
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 22/226 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E Q ++ + GV + S+N +I+ G +EA K M V P+ +
Sbjct: 497 GRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSY 556
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L YC AG +D + F+++ S+GI P V+ Y +L ++ R+ +A E++
Sbjct: 557 NTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEA----KELYL 612
Query: 122 NRISN--------IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
N I++ + + + K DE+ +F L +G L + +N ++ A
Sbjct: 613 NMINSGTKWDIYTYNIILNGLCKSNCVDEA-----IKMFQNLCSKGLQLNIITFNIMIGA 667
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
L G +E A + GL N + + + V + E G+
Sbjct: 668 LLKGGRKEDAMDLFAAIPANGLV-----QNVVTYRLVVENLIEEGS 708
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 95/225 (42%), Gaps = 11/225 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---CDPNERTLEAVLS 66
+L RM E G ++ S+N +++ R EEA++ M + C PN + V++
Sbjct: 152 LLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVIN 211
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+ G VD+ F E+ GI P V+ Y ++ K+ +D A + +M N +
Sbjct: 212 GFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKP 271
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR- 185
+I G + W+ V + ++++ G Y +LL L C R R AR
Sbjct: 272 NIDTYNCLIHG-YLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYL-CKNGRCREARF 329
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
D +G+ P + + + +H GA + + LN M
Sbjct: 330 FFDSMIGKGIKPSV-----TTYGIMLHGYATKGALSEMHDLLNLM 369
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 92/240 (38%), Gaps = 36/240 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEA-----------IKAYV--- 47
G +KE +L MS G N ++ +++ + GR EA IK V
Sbjct: 287 GKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTY 346
Query: 48 --------------EMEKVR-------CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
EM + PN S Y G++D++ + F +++
Sbjct: 347 GIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQ 406
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
G+ P + Y L+ K R DDA ++M ++ V ++ G W+
Sbjct: 407 QGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYG-LCTVDKWE 465
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
VE +F ++ G + F+N +L L G R++D G+ P++ +N L+
Sbjct: 466 KVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLI 525
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + + +F+A+I+AF + G+ EA K Y EM K DP+ T
Sbjct: 305 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 364
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+K+ F+ + S P V+ Y L+ + K R ++ + EM
Sbjct: 365 SSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ 424
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F + M + +F ++ +G + YN LL+ L G E
Sbjct: 425 RGLVGNTVTYNILIQGLF-QAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLE 483
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V + + + P ++ +N ++
Sbjct: 484 KAMVVFEYLQRSKMEPTIYTYNIMI 508
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 95/214 (44%), Gaps = 3/214 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM G + ++ V+ + G + A +ME+ + +P ++
Sbjct: 204 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTII 263
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C +D++ F+E+++ GI P+V+ Y L++ RW DA LL +M +I
Sbjct: 264 DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI- 322
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N T + F E E ++D++ + Y++L+ +C+ R + A
Sbjct: 323 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLING-FCMHDRLDEAK 381
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
++ + + FP++ +N L+ ++ E G
Sbjct: 382 QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEG 415
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 11/212 (5%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ +M +G N+ +FN +I + EA+ M C P+ T V+
Sbjct: 169 EAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVV 228
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ C G D + +++ + P V+ Y ++ K DDA L EM T I
Sbjct: 229 NGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIR 288
Query: 126 NIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I G + D S + + + K+N + + ++AL++A G
Sbjct: 289 PNVVTYSSLISCLCNYGRWSDASRL-LSDMIERKINPDVFT-----FSALIDAFVKEGKL 342
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
A ++ DE KR + P + ++ L+ +H
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 7/185 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I+ F + R EE ++ + EM + N T ++ AG D ++E F+E+
Sbjct: 398 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 457
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD--- 141
S G+ P++M Y LL K+ + + A + + + +++ MI+G
Sbjct: 458 VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 517
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
E W + F L+ +G + YN ++ G +E A + E + G P
Sbjct: 518 EDGWDL----FCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 573
Query: 202 HNKLV 206
+N L+
Sbjct: 574 YNTLI 578
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 84/185 (45%), Gaps = 1/185 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + MS+ G+ N+ ++N +I+ Q G + A + + EM PN T +
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L C G ++++ F+ ++ S + P++ Y +++ K+ + +D + L + +
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV 532
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
MI G F + + + + +F ++ +G YN L+ A G RE +A
Sbjct: 533 KPDVVAYNTMISG-FCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591
Query: 185 RVLDE 189
++ E
Sbjct: 592 ELIKE 596
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 85/203 (41%), Gaps = 11/203 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L +M + G N + ++++ + R EA+ +M PN T ++
Sbjct: 137 AVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGL 196
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
E+ + + G P ++ Y +++ K D A+ LL++M ++
Sbjct: 197 FLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGV 256
Query: 129 QVTGQMIKG-----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +I G DD N +F ++ +G + Y++L+ L G A
Sbjct: 257 LIYNTIIDGLCKYKHMDDALN------LFKEMETKGIRPNVVTYSSLISCLCNYGRWSDA 310
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+R+L + +R + P++F + L+
Sbjct: 311 SRLLSDMIERKINPDVFTFSALI 333
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/212 (18%), Positives = 91/212 (42%), Gaps = 11/212 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M G+ N +++ +I F + + A+ +M K+ +PN TL ++L+ YC +
Sbjct: 106 QMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNI 127
+ E+ ++ +G P+ + + L+ N+ +A L+D M + ++
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 225
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
V G +G+ D N + +K+ G+ YN +++ L + A +
Sbjct: 226 VVVNGLCKRGDTDLAFN------LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLF 279
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
E +G+ P + ++ L+ + + W +
Sbjct: 280 KEMETKGIRPNVVTYSSLISCLCNYGRWSDAS 311
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +IE + G+ E+ + + P+ ++S +C G +E+ F+E+
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----NRISNIHQVTGQMIKGEFD 140
K G LP+ CY L+ + + + L+ EM + S I VT + G D
Sbjct: 563 KEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLD 622
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E Q +L M + G A S+N +I + + R +EA VEM + P+ T ++
Sbjct: 355 EAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLM 414
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G E+ F+E+ SSG+LP +M Y LL K D+A LL M ++I
Sbjct: 415 QGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIE 474
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +I+G F ++ + +F KL +G +R Y +++ L GL + A
Sbjct: 475 PDIVLYNILIEGMF-IAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYE 533
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ + G P +N ++
Sbjct: 534 LFRKMEDDGFLPNSCSYNVII 554
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 9/208 (4%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L + +LS M + G+ + +++ ++ F G EA + EM PN T
Sbjct: 247 LVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFT 306
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ C G+V E++ F+ + G P+ Y L+ Y +N+ D+A +LD M
Sbjct: 307 ILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDK 366
Query: 123 RISNIHQVTGQMIKGEFD----DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ + +I G DE+ +VE +L + Y+ L++ L +G
Sbjct: 367 GCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVT-----YSTLMQGLCQVG 421
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
+ A + E GL P+L ++ L+
Sbjct: 422 RPQEALNLFKEMCSSGLLPDLMTYSTLL 449
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + M V N+ +F +++ + G EA + M K +PN T
Sbjct: 281 GHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTY 340
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ YC +DE+++ + G P V Y +L+ Y K R D+A LL EM
Sbjct: 341 NALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSE 400
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ +++G Q +F ++ G + Y+ LL+ L G +
Sbjct: 401 KELTPDTVTYSTLMQG-LCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLD 459
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++L + + P++ +N L+
Sbjct: 460 EALKLLKSMQESKIEPDIVLYNILI 484
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + + M G + S++ VI + G A++ +ME+ C PN
Sbjct: 176 GEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAY 235
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C LV+++ + E+ GI P V+ Y +L + ++A L +EM
Sbjct: 236 TTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEM-V 294
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
R + VT ++ E VF+ + +G YNAL++ +CL +
Sbjct: 295 GRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDG-YCLNNQM 353
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A +VLD +G P + +N L+
Sbjct: 354 DEAQKVLDIMVDKGCAPVVHSYNILI 379
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 87/198 (43%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L +M + G+ ++ +FN +I G +EA+ + EM + P+ + V++
Sbjct: 148 SVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGL 207
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +G + + ++++ G P+++ Y ++ K +DA LL EM +R
Sbjct: 208 CKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEM-VDRGIPPD 266
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT I F + +F+++ + L++ L G+ A V +
Sbjct: 267 VVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFE 326
Query: 189 EATKRGLFPELFRHNKLV 206
TK+G P + +N L+
Sbjct: 327 AMTKKGAEPNAYTYNALM 344
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M SG+ + +++ +++ + G +EA+K M++ + +P+
Sbjct: 421 GRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLY 480
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ AG ++ +KE F ++ + GI P++ Y +++ K D+AY L +M
Sbjct: 481 NILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKM 538
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M ES + + +N +IE G+ E A + + ++ P RT
Sbjct: 456 GHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTY 515
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ GL DE+ E F++++ G LP+ Y +++ + ++ A L+DEM
Sbjct: 516 TIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVG 575
Query: 122 NRIS 125
R S
Sbjct: 576 KRFS 579
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 77/207 (37%), Gaps = 9/207 (4%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y ++ ++M GV N S N +I + AI +M K+ P+ T
Sbjct: 108 YSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNT 167
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN- 122
+++ C G + E+ F E+ G P V+ Y ++ KS A LL +M
Sbjct: 168 LINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKG 227
Query: 123 ---RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + + K +++ + E V D+ G + Y+ +L LG
Sbjct: 228 CKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMV-DR----GIPPDVVTYSTILHGFCSLGH 282
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
A + +E R + P LV
Sbjct: 283 LNEATILFNEMVGRNVMPNTVTFTILV 309
>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Brachypodium distachyon]
Length = 571
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 98/197 (49%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + G+A + +++A++ G+ EE +K EM+ + PN TL +VL+ +C
Sbjct: 280 VFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFC 339
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G++ +++ ++ + P+V+ Y +L+ Y + ++ DA + + M + +
Sbjct: 340 KKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNAR 399
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ +I G F +W+ V + D++ +G + YN L+ AL G +A ++LDE
Sbjct: 400 IYNCLIAG-FTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDE 458
Query: 190 ATKRGLFPELFRHNKLV 206
GL P +N ++
Sbjct: 459 MLMVGLEPVHLTYNTII 475
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 4/185 (2%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S N ++ A R + A +A+ + R P+ T V+S C G + ++ + ++I
Sbjct: 152 SVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDVAKDI 211
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAY---GLLDEMHTNRISNIHQVTGQMIKGEFDD 141
++ G+ PSV+ Y ++ Y K R Y LL EM IS ++VT ++ +
Sbjct: 212 RAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISP-NEVTFNVLVNGYCK 270
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+SN VF+++ +G + Y+AL+ L G E +++DE GL P L
Sbjct: 271 DSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLAT 330
Query: 202 HNKLV 206
N ++
Sbjct: 331 LNSVL 335
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/196 (17%), Positives = 80/196 (40%), Gaps = 1/196 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + + + M + V N ++ +++ +R+ + ++A+ M PN R
Sbjct: 342 GMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIY 401
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ + G E++ G+ ++ Y +L+ A LLDEM
Sbjct: 402 NCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLM 461
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +H +I G + ++ N + + ++ + YN ++ L +G E
Sbjct: 462 VGLEPVHLTYNTIING-YCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKME 520
Query: 182 RAARVLDEATKRGLFP 197
+L+E ++GL P
Sbjct: 521 ETNELLNEMLEKGLVP 536
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 101/257 (39%), Gaps = 45/257 (17%)
Query: 18 GVARNSDSFNAVIEAF---RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74
G+A + ++N +I+ + + GR EM + PNE T +++ YC
Sbjct: 215 GLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNT 274
Query: 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----TNRISNIHQV 130
+ F+E+K GI SV+ Y L+ + ++ L+DEM ++ ++ V
Sbjct: 275 AAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSV 334
Query: 131 -TGQMIKGEFDDESNW-----------QMVEY------------------VFDKLNCEGY 160
G KG D W +V Y V + ++ +G
Sbjct: 335 LNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGV 394
Query: 161 GLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
R YN L+ G + +LDE +G+ ++ +N L+ ++ V +G
Sbjct: 395 RPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCV----KGEVR 450
Query: 221 TAISVWLNKMYEMFMMG 237
A+ + + EM M+G
Sbjct: 451 KAVKL----LDEMLMVG 463
>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
Length = 768
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 7/212 (3%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M + GV N+ ++ +I + G+++E ++ EM P+ +L
Sbjct: 222 KGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDY 281
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G E++ F + GI P V Y +LL YA + + LD M N +S
Sbjct: 282 LCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPD 341
Query: 128 HQVTGQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
H + M F+ + M++ ++FDK+ + G+ Y AL++AL LG + A
Sbjct: 342 HHIFNIM----FNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAV 397
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
++ G+ P++F + LV+ + WE
Sbjct: 398 LKFNQMINEGVTPDIFVFSSLVYGLCTVDKWE 429
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 9/202 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E Q ++ M V + S+N +++ GR +EA K M + P+E T
Sbjct: 461 GRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTY 520
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L YC A +D++ F+E+ G+ P V+ Y +L + R+ +A L M
Sbjct: 521 NTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMIN 580
Query: 122 NR----ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
NR I + + + F DE+ ++M F L + L + N ++ AL
Sbjct: 581 NRRKCDIYTYTIILNGLCRNNFVDEA-FKM----FQSLCSKDLQLDIFTINIMIGALLKG 635
Query: 178 GLRERAARVLDEATKRGLFPEL 199
G +E A + + GL P++
Sbjct: 636 GRKEDAMDLFATISAYGLVPDV 657
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 22/201 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-------PNERTLE 62
+L RM E G N S+N +++ R EEA+ E+ + D PN T
Sbjct: 151 LLRRMPEFGCTLNVISYNILLKGLCNEKRAEEAL----ELMHMMADDGDGSHTPNVVTYT 206
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ C A +VD +K FQ + G+ P+ Y L+ Y + +W + +L EM T+
Sbjct: 207 TVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTH 266
Query: 123 RISNIHQVTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ + ++ G + N +FD L +G + Y LL
Sbjct: 267 GLQPDCVIYAVLLDYLCKNGRCTEARN------IFDSLIRKGIKPHVTIYGILLHGYATE 320
Query: 178 GLRERAARVLDEATKRGLFPE 198
G LD + G+ P+
Sbjct: 321 GALSEMHSFLDLMVRNGVSPD 341
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + L M +GV+ + FN + A+ + +EA+ + +M + P
Sbjct: 321 GALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNY 380
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C G VD++ +F ++ + G+ P + + L+ ++W+ A L E+
Sbjct: 381 GALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLD 440
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I ++ ++ E + + D + + YN L++ G +
Sbjct: 441 QGI-RLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRID 499
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
AA++LD GL P+ F +N L+
Sbjct: 500 EAAKLLDVMVSIGLKPDEFTYNTLL 524
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
+ G+ N+ FN ++ + GR EA + M +V P+ + ++ +C G +D
Sbjct: 440 DQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRID 499
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ + + S G+ P Y LL Y K+ R DDAY L EM
Sbjct: 500 EAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREM 543
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + + +F+A+I+AF + G+ EA K Y EM K DP+ T
Sbjct: 919 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 978
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+K+ F+ + S P V+ Y L+ + K R ++ + EM
Sbjct: 979 SSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ 1038
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F + M + +F ++ +G + YN LL+ L G E
Sbjct: 1039 RGLVGNTVTYNILIQGLF-QAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLE 1097
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V + + + P ++ +N ++
Sbjct: 1098 KAMVVFEYLQRSKMEPTIYTYNIMI 1122
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 96/197 (48%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M + + N +++A+++AF + G+ EA + + EM ++ DP+ T ++++ C
Sbjct: 350 LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLC 409
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+DE+ + F + S G L V+ Y L+ + K+ R +D L EM + +
Sbjct: 410 LHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTV 469
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I+G F + E+ F +++ G + YN LL L G E+A + ++
Sbjct: 470 TYNTLIQGFFQAGDVDKAQEF-FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 528
Query: 190 ATKRGLFPELFRHNKLV 206
KR + ++ + ++
Sbjct: 529 MQKREMDLDIVTYTTVI 545
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 91/202 (45%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM G + ++ V+ + G + A +ME+ + +P ++
Sbjct: 818 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTII 877
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C +D++ F+E+++ GI P+V+ Y L++ RW DA LL +M +I
Sbjct: 878 DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI- 936
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N T + F E E ++D++ + Y++L+ +C+ R + A
Sbjct: 937 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLING-FCMHDRLDEAK 995
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ + + FP++ +N L+
Sbjct: 996 QMFEFMVSKHCFPDVVTYNTLI 1017
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 94/199 (47%), Gaps = 3/199 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+IL +M + G + + +++ F + R +A+ +M ++ P+ A++
Sbjct: 244 SILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSL 303
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C V+++ + F+EI+ GI P+V+ Y L+ S+RW DA LL +M +I+ +
Sbjct: 304 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP-N 362
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVL 187
+T + F + +F+++ + Y++L+ L CL R + A ++
Sbjct: 363 VITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGL-CLHDRIDEANQMF 421
Query: 188 DEATKRGLFPELFRHNKLV 206
D +G ++ +N L+
Sbjct: 422 DLMVSKGCLADVVSYNTLI 440
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 7/185 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I+ F + R EE ++ + EM + N T ++ AG D ++E F+E+
Sbjct: 1012 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 1071
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD--- 141
S G+ P++M Y LL K+ + + A + + + +++ MI+G
Sbjct: 1072 VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 1131
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
E W + F L+ +G + YN ++ G +E A + E + G P
Sbjct: 1132 EDGWDL----FCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 1187
Query: 202 HNKLV 206
+N L+
Sbjct: 1188 YNTLI 1192
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 11/212 (5%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ +M +G N+ +FN +I + EA+ M C P+ T V+
Sbjct: 783 EAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVV 842
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ C G D + +++ + P V+ Y ++ K DDA L EM T I
Sbjct: 843 NGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIR 902
Query: 126 NIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I G + D S + + + K+N + + ++AL++A G
Sbjct: 903 PNVVTYSSLISCLCNYGRWSDASRL-LSDMIERKINPDVFT-----FSALIDAFVKEGKL 956
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
A ++ DE KR + P + ++ L+ +H
Sbjct: 957 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 988
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 84/185 (45%), Gaps = 1/185 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + MS+ G+ N+ ++N +I+ Q G + A + + EM PN T +
Sbjct: 1027 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 1086
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L C G ++++ F+ ++ S + P++ Y +++ K+ + +D + L + +
Sbjct: 1087 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV 1146
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
MI G F + + + + +F ++ +G YN L+ A G RE +A
Sbjct: 1147 KPDVVAYNTMISG-FCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 1205
Query: 185 RVLDE 189
++ E
Sbjct: 1206 ELIKE 1210
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 85/203 (41%), Gaps = 11/203 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L +M + G N + ++++ + R EA+ +M PN T ++
Sbjct: 751 AVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGL 810
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
E+ + + G P ++ Y +++ K D A+ LL++M ++
Sbjct: 811 FLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGV 870
Query: 129 QVTGQMIKG-----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +I G DD N +F ++ +G + Y++L+ L G A
Sbjct: 871 LIYNTIIDGLCKYKHMDDALN------LFKEMETKGIRPNVVTYSSLISCLCNYGRWSDA 924
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+R+L + +R + P++F + L+
Sbjct: 925 SRLLSDMIERKINPDVFTFSALI 947
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/212 (18%), Positives = 91/212 (42%), Gaps = 11/212 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M G+ N +++ +I F + + A+ +M K+ +PN TL ++L+ YC +
Sbjct: 720 QMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 779
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNI 127
+ E+ ++ +G P+ + + L+ N+ +A L+D M + ++
Sbjct: 780 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 839
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
V G +G+ D N + +K+ G+ YN +++ L + A +
Sbjct: 840 VVVNGLCKRGDTDLAFN------LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLF 893
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
E +G+ P + ++ L+ + + W +
Sbjct: 894 KEMETKGIRPNVVTYSSLISCLCNYGRWSDAS 925
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +IE + G+ E+ + + P+ ++S +C G +E+ F+E+
Sbjct: 1117 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 1176
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----NRISNIHQVTGQMIKGEFD 140
K G LP+ CY L+ + + + L+ EM + S I VT + G D
Sbjct: 1177 KEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLD 1236
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 74/155 (47%), Gaps = 11/155 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ MS+ G+ N+ ++N +I+ F Q G ++A + + +M+ P+ T +L C
Sbjct: 455 LFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLC 514
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL-----LDEMHTNRI 124
G ++++ F++++ + ++ Y ++ K+ + ++A+ L L + + +
Sbjct: 515 DNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIV 574
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159
+ ++G KG + VE ++ K+ EG
Sbjct: 575 TYTTMMSGLCTKGLLHE------VEALYTKMKQEG 603
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 100/209 (47%), Gaps = 1/209 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + +M + GV ++D++N +I + G+++E ++ EM P+ T ++L+
Sbjct: 258 EGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNY 317
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G E++ F + GI P+V Y +L+ YA + + LL+ M N +S
Sbjct: 318 LCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPD 377
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
H + +I + ++ ++F+K+ +G + + AL++AL LG + A
Sbjct: 378 HHIF-NIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKF 436
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWE 216
++ G+ P +F N LV+ + WE
Sbjct: 437 NQMMNEGVAPNIFVFNSLVYGLCTVDKWE 465
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 11/227 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---CDPNERTLEAVLS 66
++ RM E G + S+N +++ F R EEA++ M + C PN + V++
Sbjct: 152 LIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVIN 211
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+ G VD++ F E+ GI P+V+ Y ++ K+ D A G+ +M +
Sbjct: 212 GFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKP 271
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR- 185
+ +I G + W+ V + ++++ G Y +LL L C R R AR
Sbjct: 272 DNDTYNCLIHG-YLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYL-CNNGRCREARF 329
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
D ++G+ P N ++ + +H GA + + LN M E
Sbjct: 330 FFDSMIRKGIKP-----NVAIYGILIHGYATKGALSEMHDLLNLMVE 371
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 17/209 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + Q ++ M G + S+ +I GR +EA K+ M V P+E T
Sbjct: 497 GQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTY 556
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L YC AG +D++ F+E+ +GI P V+ Y +L + R+ +A E++
Sbjct: 557 NTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEA----KELYL 612
Query: 122 NRISNIHQ--------VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
N I++ Q + + K DE+ +F L + + L + +N ++ A
Sbjct: 613 NMITSGKQWNIWIYNIILNGLSKNNCVDEA-----FKLFQSLCSKDFQLEITTFNIMIGA 667
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRH 202
L+ G E A + + GL P++F +
Sbjct: 668 LFKSGRNEDAMHLFATISSYGLVPDVFTY 696
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M G+ N + +I + G E M + P+
Sbjct: 322 GRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIF 381
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ + Y ++DE+ F ++K G+ P V+ + L+ K R DDA ++M
Sbjct: 382 NIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMN 441
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ V ++ G + + E+ F+ LN +G + F+N +L L G
Sbjct: 442 EGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLN-QGIRPDVVFFNTILCNLCTKGQVM 500
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A R++D + G P++ + L+
Sbjct: 501 KAQRLIDLMERVGTRPDVISYTTLI 525
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 4/197 (2%)
Query: 5 KECQAILSRMSES---GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
+E +L M++S N S+ VI F G+ ++A ++EM PN T
Sbjct: 182 EEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTY 241
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ C A +VD ++ FQ++ G+ P Y L+ Y +W + +L+EM
Sbjct: 242 TTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSA 301
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + G ++ + + + FD + +G + Y L+ G
Sbjct: 302 HGLKPDCYTYGSLLN-YLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALS 360
Query: 182 RAARVLDEATKRGLFPE 198
+L+ + GL P+
Sbjct: 361 EMHDLLNLMVENGLSPD 377
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 103/206 (50%), Gaps = 2/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + C+A L +M+++ V + +N++I+ GR EEA + Y +++K P+E T
Sbjct: 502 GNISLACEA-LEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFT 560
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ YC G ++++ + +++ +SG+ P+ Y LL Y KSN ++ +L M
Sbjct: 561 YSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSML 620
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + + G +I+ N ++ V ++ G + Y++L+ L +
Sbjct: 621 GSGDKPDNHIYGIVIR-NLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADM 679
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E+A +LDE K GL P + +N L+
Sbjct: 680 EKAVGLLDEMAKEGLEPGIVCYNALI 705
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 12/228 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE +A+L MS SG+ N + +++ F + G+ EA EM PN+
Sbjct: 326 GSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIM 385
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ ++ C G + + + +E+ G+ P Y L+ + + + D A+ LL+EM
Sbjct: 386 YDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMR 445
Query: 121 TNRI-SNIHQ----VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
+ I N++ + G GE + N + +++ EG Y L+
Sbjct: 446 NSGILPNVYSYGIMINGLCQNGESKEAGN------LLEEMISEGLKPNAFMYAPLIIGHS 499
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVD-VHRMWEGGAYTA 222
G A L++ TK + P+LF +N L+ + V RM E Y A
Sbjct: 500 KEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYA 547
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 36/203 (17%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + + M A N ++N +I + G EEA EM P+ T A
Sbjct: 259 FDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGA 318
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ C + E+K E+ SG+ P+++ Y L+ + K + +A+ +L EM +
Sbjct: 319 LMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAG 378
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ + N M Y+ L+ L +G RA
Sbjct: 379 V-----------------QPNKIM-------------------YDNLIRGLCKIGQLGRA 402
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+++L E K GL P+ F +N L+
Sbjct: 403 SKLLKEMIKVGLRPDTFTYNPLM 425
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 83/205 (40%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E M + G++ ++ ++ A++ +G R +EA EM PN
Sbjct: 292 GAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVY 351
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + G E+ + +E+ S+G+ P+ + Y L+ K + A LL EM
Sbjct: 352 GTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIK 411
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +++G F E + +++ G + Y ++ L G +
Sbjct: 412 VGLRPDTFTYNPLMQGHFQQHDKDGAFE-LLNEMRNSGILPNVYSYGIMINGLCQNGESK 470
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +L+E GL P F + L+
Sbjct: 471 EAGNLLEEMISEGLKPNAFMYAPLI 495
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic; AltName: Full=Protein PROTON GRADIENT
REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 36/206 (17%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY E + + M + G N +N +I F + G + A + M K P+ +T
Sbjct: 905 GRLY-EAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKT 963
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G VDE F+E+K SG+ P V+CY +++ KS+R ++A L +EM
Sbjct: 964 YSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMK 1023
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T+R G + YN+L+ L G+
Sbjct: 1024 TSR-----------------------------------GITPDLYTYNSLILNLGIAGMV 1048
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E A ++ +E + GL P +F N L+
Sbjct: 1049 EEAGKIYNEIQRAGLEPNVFTFNALI 1074
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 91/210 (43%), Gaps = 2/210 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + RM G + ++++++ + + + EME + PN T +
Sbjct: 206 EAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICI 265
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
V AG ++E+ E + + G P V+ Y +L+ + + D A + ++M T R
Sbjct: 266 RVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGR-H 324
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+VT + F D + V+ + ++ +G+ + + L++AL G A
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 384
Query: 186 VLDEATKRGLFPELFRHNKLVWS-VDVHRM 214
LD +G+ P L +N L+ + VHR+
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICGLLRVHRL 414
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 94/212 (44%), Gaps = 3/212 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + ++ +G + ++N +++A+ + G+ +E + Y EM C+ N T V+S
Sbjct: 805 QDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISG 864
Query: 68 YCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
AG VD++ + + ++ S P+ Y L+ +KS R +A L + M
Sbjct: 865 LVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRP 924
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ +I G F +F ++ EG ++ Y+ L++ L +G +
Sbjct: 925 NCAIYNILING-FGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHY 983
Query: 187 LDEATKRGLFPELFRHNKLVWSV-DVHRMWEG 217
E + GL P++ +N ++ + HR+ E
Sbjct: 984 FKELKESGLNPDVVCYNLIINGLGKSHRLEEA 1015
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 9/200 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M GV + ++ I+ + + G A++ + +M+ PN A L
Sbjct: 420 LFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 479
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RIS 125
AG E+K+ F +K G++P + Y M++ Y+K D+A LL EM N +
Sbjct: 480 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVI 539
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
++ + + K + DE+ W+M F ++ + YN LL L G + A
Sbjct: 540 VVNSLINTLYKADRVDEA-WKM----FMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIE 594
Query: 186 VLDEATKRGLFPELFRHNKL 205
+ + ++G P N L
Sbjct: 595 LFEGMVQKGCPPNTITFNTL 614
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 63/119 (52%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E + I + + G+ +S ++N +++ + + G +EAIK EM + C+P+
Sbjct: 481 AGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIV 540
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ ++++ A VDE+ + F +K + P+V+ Y LLA K+ + +A L + M
Sbjct: 541 VNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGM 599
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 16/203 (7%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD----PNERTLEAVLSVY 68
R+ +G+ R+ DS ++ R + A EK D P T ++
Sbjct: 738 RLVANGICRDGDSI--LVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGL 795
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NR 123
A +++ +++ F ++KS+G +P V Y LL Y KS + D+ + L EM T N
Sbjct: 796 LEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANT 855
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I++ ++G + G DD ++ +D ++ + Y L++ L G A
Sbjct: 856 ITHNIVISGLVKAGNVDDA-----LDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEA 910
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
++ + G P +N L+
Sbjct: 911 KQLFEGMLDYGCRPNCAIYNILI 933
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +LS M E+G + N++I + R +EA K ++ M++++ P T
Sbjct: 517 GEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTY 576
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L+ G + E+ E F+ + G P+ + + L K++ A +L +M
Sbjct: 577 NTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM 634
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M + G N+ +FN + + + A+K +M + C P+ T
Sbjct: 587 GKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTY 646
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
++ G V E+ F ++K + P + C LL K++ +DAY ++
Sbjct: 647 NTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLIEDAYKII 700
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 45/107 (42%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM E + ++N ++ + G+ +EAI+ + M + C PN T + C
Sbjct: 563 RMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKND 622
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
V + + ++ G +P V Y ++ K+ + +A +M
Sbjct: 623 EVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM 669
>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +F+A+I+AF + G+ EA K Y EM K DP+ T
Sbjct: 305 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 364
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+K F+ + S P+V+ Y L+ + K+ R D+ L EM
Sbjct: 365 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQ 424
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G F + VF ++ +G + Y+ LL+ L G E
Sbjct: 425 RGLVGNTVTYTTLIHGFF-QARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVE 483
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A V + + + P+++ +N ++
Sbjct: 484 TALVVFEYLQRSKMEPDIYTYNIMI 508
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM G + ++ V+ + G + A+ +ME+ + +P ++
Sbjct: 204 EAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTII 263
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C V+++ F E+ + GI P+V+ Y L+ RW DA LL +M +I
Sbjct: 264 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI- 322
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E E ++D++ + Y++L+ +C+ R + A
Sbjct: 323 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING-FCMHDRLDEAK 381
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ + + FP + +N L+
Sbjct: 382 HMFELMISKDCFPNVVTYNTLI 403
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 103/250 (41%), Gaps = 20/250 (8%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + +++ +M E G +S +FN +I + R EA+ M C P+ T
Sbjct: 164 GNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVT 223
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ C G +D + ++++ I P V+ Y ++ +DA L EM
Sbjct: 224 YGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMD 283
Query: 121 TNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
I +I+ G + D S + + + K+N + ++AL++A
Sbjct: 284 NKGIRPNVVTYNSLIRCLCNYGRWSDASRL-LSDMIERKINPN-----VVTFSALIDAFV 337
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFM 235
G A ++ DE KR + P++F ++ L+ +H + + M+E+ +
Sbjct: 338 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH---------MFELMI 388
Query: 236 MGEDLPQLAT 245
+ P + T
Sbjct: 389 SKDCFPNVVT 398
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 83/188 (44%), Gaps = 7/188 (3%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N ++N +I+ F + R +E ++ + EM + N T ++ + A D ++ F
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF 454
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+++ S G+LP +M Y +LL + + + A + + + +++ MI+G
Sbjct: 455 KQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKA 514
Query: 142 ---ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
E W + F L+ +G + Y ++ GL+E A + E + G P+
Sbjct: 515 GKVEDGWDL----FCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPD 570
Query: 199 LFRHNKLV 206
+N L+
Sbjct: 571 SGTYNTLI 578
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +IE + G+ E+ + + PN T ++S +C GL +E+ F+E+
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREM 562
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI----SNIHQVTGQMIKGEFD 140
K G LP Y L+ + + + L+ EM + R S I VT + G D
Sbjct: 563 KEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNMLHDGRLD 622
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 86/201 (42%), Gaps = 7/201 (3%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L++M + G + + N+++ F G R +A+ +M ++ P+ T ++
Sbjct: 137 AVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGL 196
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
E+ + G P ++ Y +++ K D A LL +M +I
Sbjct: 197 FRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGV 256
Query: 129 QVTGQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +I D N++ V +F +++ +G + YN+L+ L G A+R
Sbjct: 257 VIYNTII----DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 312
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+L + +R + P + + L+
Sbjct: 313 LLSDMIERKINPNVVTFSALI 333
>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62914, mitochondrial; Flags: Precursor
gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats. EST gb|AA728420 comes from this gene
[Arabidopsis thaliana]
gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 528
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 6/226 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +F+A+I+AF + G+ +A K Y EM K DPN T
Sbjct: 302 GRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTY 361
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C + E+K+ + + LP+V+ Y L+ + K+ R D L EM
Sbjct: 362 SSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQ 421
Query: 122 NRISNIHQVTGQMIKGEFD--DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +I G F D N QM VF ++ G + YN LL+ L G
Sbjct: 422 RGLVGNTVTYTTLIHGFFQARDCDNAQM---VFKQMVSVGVHPNILTYNILLDGLCKNGK 478
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE-GGAYTAIS 224
+A V + + + P+++ +N ++ + W+ GG Y S
Sbjct: 479 LAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWKMGGIYFVAS 524
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 89/201 (44%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM + G + ++ AV+ + G + A+ +ME + + N V+
Sbjct: 201 EAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVI 260
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C D++ F E+++ G+ P+V+ Y L++ RW DA LL +M +I
Sbjct: 261 DSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKI- 319
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
N + VT + F + E +++++ + Y++L+ L A +
Sbjct: 320 NPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQ 379
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+L+ ++ P + +N L+
Sbjct: 380 MLELMIRKDCLPNVVTYNTLI 400
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 87/206 (42%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + A++ +M E G ++ +F +I + EA+ M + C P+ T
Sbjct: 161 GNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVT 220
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AV++ C G D + +++++ I +V+ Y ++ K DDA L EM
Sbjct: 221 YGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 280
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N+ + +T + + W + + + ++AL++A G
Sbjct: 281 -NKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKL 339
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+A ++ +E KR + P +F ++ L+
Sbjct: 340 VKAEKLYEEMIKRSIDPNIFTYSSLI 365
>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 526
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 4/208 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ +L M + + + +FNA+I+AF + G+ +A + Y EM ++ PN T
Sbjct: 225 GRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTY 284
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ C G +DE+++ F +++ G P V+ Y L+ + K + +DA + EM
Sbjct: 285 TSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQ 344
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ +I+G F + + VF + G +R YN LL L G
Sbjct: 345 KGLTGNTITYTTLIQG-FGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVN 403
Query: 182 RAARVLDEATKR---GLFPELFRHNKLV 206
+A + ++ KR G+ P + +N L+
Sbjct: 404 KALMIFEDMQKREIDGVPPNIRTYNVLL 431
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 1/199 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ L ++ + G + +F ++I F G R EEA+ +M ++ P+ ++
Sbjct: 126 SSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDS 185
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G VD + F ++++ GI P V+ Y L+ S RW DA LL M +I
Sbjct: 186 LCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKP- 244
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+T + F E + +++++ + Y +L+ L G + A ++
Sbjct: 245 DVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMF 304
Query: 188 DEATKRGLFPELFRHNKLV 206
+G FP++ + L+
Sbjct: 305 YLMETKGCFPDVVAYTSLI 323
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/189 (17%), Positives = 81/189 (42%), Gaps = 1/189 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV+ + + N ++ F Q + A ++ K+ +P+ T ++++ +C ++E+
Sbjct: 101 GVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEA 160
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
++ GI P V+ Y ++ K+ D+A L ++M I + ++ G
Sbjct: 161 MSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNG 220
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ W+ + + + + +NAL++A G A + +E + + P
Sbjct: 221 -LCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAP 279
Query: 198 ELFRHNKLV 206
+F + L+
Sbjct: 280 NIFTYTSLI 288
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 90/211 (42%), Gaps = 11/211 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E +++++M E G+ + + +I++ + G + A+ + +ME P+
Sbjct: 154 GNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVM 213
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++++ C +G ++ + + I P V+ + L+ + K + DA L +EM
Sbjct: 214 YTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMI 273
Query: 121 TNRIS-NIHQVT----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
I+ NI T G ++G D+ +F + +G + Y +L+
Sbjct: 274 QMSIAPNIFTYTSLINGLCMEGRLDE------ARQMFYLMETKGCFPDVVAYTSLINGFC 327
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
E A ++ E +++GL + L+
Sbjct: 328 KCKKVEDAMKIFYEMSQKGLTGNTITYTTLI 358
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD---PNERTLEAV 64
Q + M GV N ++N ++ G+ +A+ + +M+K D PN RT +
Sbjct: 371 QEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVL 430
Query: 65 LSVYCFAGLVDESKEQFQEIK 85
L C+ G ++++ F +++
Sbjct: 431 LHGLCYNGKLEKALMVFGDMQ 451
>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
Length = 646
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 19/223 (8%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + M E+G N ++NA+++ + +GG +EA + VEME PN T +
Sbjct: 162 QEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNEL 221
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-TNR 123
++ Y AGL DE+ + + S G+ P YC L++ + ++ R++ A EM TN
Sbjct: 222 IAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNC 281
Query: 124 ISNIHQVTGQM---IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
NI VT + I G + + V + NC + +N+LL++ G+
Sbjct: 282 TPNI--VTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTP---DLVTWNSLLKSFGNCGML 336
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV----------WSVDVHR 213
+ V E + G P + N L+ +SVD+++
Sbjct: 337 TEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYK 379
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 64/115 (55%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + Q++ M + ++ + ++N +I A Q +EA++ + EM++ C PN T
Sbjct: 123 GDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVT 182
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
A+L VY G+ E+ E E++++GI P+++ Y L+A YA++ D+A L
Sbjct: 183 YNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAAL 237
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E Q L+++ ++G + + FNA+I + G E A+K E+ K + P+ T ++
Sbjct: 479 EAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLM 538
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
S+Y G+ +++E E++ +G P+++ Y LL Y K R DDA + +M R+
Sbjct: 539 SMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARV 597
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 2/208 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++C+ + M+E+G+ + +I ++ G+F + K E+EK P L
Sbjct: 404 GRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGIL 463
Query: 62 -EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ + YC + +E++ ++ +G P + + ++++ AK + A LL+E+
Sbjct: 464 CKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIR 523
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ VT + + E + E V ++ G + YN LL + G
Sbjct: 524 KAQLKP-DGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRM 582
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWS 208
+ AARV + + P+ F N LV S
Sbjct: 583 DDAARVFGDMVAARVRPDNFTFNTLVGS 610
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 92/210 (43%), Gaps = 10/210 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + M +G D+FN +IE + + G + ++ Y + + P T
Sbjct: 334 GMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTF 393
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ G + ++ QE+ +G+ S C+ L+ YA S ++ +DE+
Sbjct: 394 AALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEK 453
Query: 122 NRISNIHQVTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ + + + K D+E+ + ++L G+ ++ +NA++
Sbjct: 454 SAKQPLSGILCKTFVLAYCKCCMDNEA-----QLALNQLYDNGHSPDIKVFNAMISMCAK 508
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G ERA ++L+E K L P+ +N L+
Sbjct: 509 RGWIERAVKLLEEIRKAQLKPDGVTYNCLM 538
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 51/102 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+Y + + ++S M +G A N ++N ++ ++ + GR ++A + + +M R P+ T
Sbjct: 545 GMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTF 604
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103
++ Y GL E+ + + G P+ + + LL Y
Sbjct: 605 NTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGY 646
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 85/216 (39%), Gaps = 36/216 (16%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL E A+ + G+ + ++ +I AF + R+E+A++ + EM K C PN T
Sbjct: 228 AGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVT 287
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ +Y +D+ + F+ ++ P ++ + LL + G+L E
Sbjct: 288 YNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNC-------GMLTE-- 338
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+SN VF ++ GY G+ +N L+E G
Sbjct: 339 ---VSN------------------------VFREMKRAGYMPGVDTFNILIECYGRCGYV 371
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ + + + GL P + L+ S+ W+
Sbjct: 372 DYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQ 407
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 39/215 (18%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ E + M G N+ ++N +++ + ++G ++ + EM+ + P++ T
Sbjct: 90 FDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYN 149
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ E+ FQE+K +G P+ + Y LL VY K +A LL EM
Sbjct: 150 TMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAA 209
Query: 123 RIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
IS NI VT YN L+ A GL +
Sbjct: 210 GISPNI--VT-----------------------------------YNELIAAYARAGLCD 232
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
AA + +GL P+ F + L+ + + +E
Sbjct: 233 EAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYE 267
>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
Length = 713
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 93/193 (48%), Gaps = 1/193 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++C + R+ G++ + ++ +++ F + G +A+ EM+K PN+ +
Sbjct: 288 EKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMI 347
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ Y G + + ++++ S+G+ P ++ Y +L+ + K+ R D A G+L+ + NR+
Sbjct: 348 MDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRL 407
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ ++ G + + Q VFD++ G G+ YN+LL L E A
Sbjct: 408 LPTIETYTSILDG-YVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENAR 466
Query: 185 RVLDEATKRGLFP 197
+LDE G+ P
Sbjct: 467 LMLDEMLANGVVP 479
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 100/207 (48%), Gaps = 6/207 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + M +G+ + ++N ++ AF + GR ++A+ ++ R P T
Sbjct: 354 GGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIET 413
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L Y G + ++ E F IK++G+ P V+ Y LL+ AK+ + ++A +LDEM
Sbjct: 414 YTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEML 473
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + + + +G + + + +F ++ E + + Y ALL+A G
Sbjct: 474 ANGVVPNERSYTALTEG-YARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAM 532
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVW 207
+RA V + T GL +HN++ +
Sbjct: 533 QRAVEVFQQITDAGL-----KHNRITY 554
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +GV N S+ A+ E + + G E+A + M+K + A+L C
Sbjct: 468 MLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACC 527
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+G + + E FQ+I +G+ + + YC +L +A+ A LL +M +
Sbjct: 528 KSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKH 580
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 5/176 (2%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK--EQFQE 83
+N++++A+ Q G E +ME+ N VL+ FA + DE K F
Sbjct: 239 YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLN--GFAEIRDEEKCLSFFHR 296
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143
+K+ G+ P+ Y ++ ++ K+ A +L+EM + +S + ++ G +
Sbjct: 297 LKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDG-YARGG 355
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
++ V++ + G + YN L+ A G ++A VL+ L P +
Sbjct: 356 DFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTI 411
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Query: 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
G + + + A+ ++K P R ++ Y G ++ F+ +++S I P+V Y
Sbjct: 114 GNWHKIVNAFQVIDK----PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIY 169
Query: 97 CMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN 156
L+ YA++ + A +EM + I V +I G + N + E+ F+K
Sbjct: 170 TSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISG-YASAGNNEAAEHWFEKFK 228
Query: 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
E G YN++++A G E +L + + G
Sbjct: 229 AENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGF 267
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ L M E+G+ N+ ++ A I + + F A K EM + PN+ ++
Sbjct: 505 EARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLI 564
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ YC G V E+ ++ + GIL Y +L+ K+++ DDA + EM I+
Sbjct: 565 NEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIA 624
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G +I G F N Q +FD++ EG + YN LL G E+A
Sbjct: 625 PDVFSYGVLING-FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+LDE + +GL P + ++
Sbjct: 684 LLDEMSVKGLHPNAVTYCTII 704
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%)
Query: 2 GLYK-----ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GL+K + + I M G+A + S+ +I F + G ++A + EM + P
Sbjct: 601 GLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP 660
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
N +L +C +G ++++KE E+ G+ P+ + YC ++ Y KS +A+ L
Sbjct: 661 NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLF 720
Query: 117 DEMHTNRISNIHQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
DEM + V ++ G +D + +F N +G +NAL+ +
Sbjct: 721 DEMKLKGLVPDSFVYTTLVDGCCRLND---VERAITIFGT-NKKGCASSTAPFNALINWV 776
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234
+ G E VL+ G F + N + +++ + + + G A ++M
Sbjct: 777 FKFGKTELKTEVLNRLMD-GSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNAN 835
Query: 235 MM 236
+M
Sbjct: 836 LM 837
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 10/221 (4%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYV-EMEKVRCDPNERTLEA 63
++ +++L M GV+ ++ +++ +I+ +G R +A K V EM + +
Sbjct: 294 EDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG-RNADAAKGLVHEMVSHGINIKPYMYDC 352
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+ V G+++++K F + +SG++P Y L+ Y + Y LL EM
Sbjct: 353 CICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRN 412
Query: 124 ISNIHQVTGQMIKG---EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I G ++KG D + + +V+ ++ G + Y L++
Sbjct: 413 IVISPYTYGTVVKGMCSSGDLDGAYNIVK----EMIASGCRPNVVIYTTLIKTFLQNSRF 468
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVD-VHRMWEGGAY 220
A RVL E ++G+ P++F +N L+ + RM E ++
Sbjct: 469 GDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSF 509
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 5/176 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ ++ +A+ M SG+ + ++ ++IE + + + + VEM+K + T
Sbjct: 361 GVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTY 420
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ C +G +D + +E+ +SG P+V+ Y L+ + +++R+ DA +L EM
Sbjct: 421 GTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKE 480
Query: 122 NRIS-NIHQVTGQMI---KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
I+ +I +I K + DE+ +VE V + L + G F + +EA
Sbjct: 481 QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA-FISGYIEA 535
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD----PNERTLEAVLSVYCF 70
++ G A ++ FNA+I + G+ E + + D PN+ T ++ C
Sbjct: 758 NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G ++ +KE F +++++ ++P+V+ Y LL Y K R + + + DE I H +
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIM 877
Query: 131 TGQMIKGEFDDESNWQ---MVEYVFDKLNC-EGYGLGMRFYNALLEALWCLGLRERAARV 186
+I + + +V+ +F K +G L + ALL +G E A +V
Sbjct: 878 YSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 937
Query: 187 LDEATKRGLFPE 198
++ + P+
Sbjct: 938 MENMVRLQYIPD 949
>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
Length = 720
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 4/203 (1%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
LS + SG+ + +F AVI A GR EEA + EM++ P + A+L Y
Sbjct: 304 LSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYAR 363
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G + E++ E++ SG+ P Y +L+ YA RW+ A LL +M + +
Sbjct: 364 KGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFI 423
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+++ + D WQ V ++ FYN +++ + A D
Sbjct: 424 FSRIL-ASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRM 482
Query: 191 TKRGLFPELFRHNKLVWSVDVHR 213
G+ P++ N L +D HR
Sbjct: 483 LSEGIEPDVVTWNTL---IDCHR 502
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 103/232 (44%), Gaps = 12/232 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +AI M E G+ +FNA+++ + + G +EA EMEK P+E T
Sbjct: 330 GRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTY 389
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G + ++ +++++ + P+ + +LA Y W + +L EM
Sbjct: 390 GLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKN 449
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEY---VFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ + MI D + +++ +D++ EG + +N L++ G
Sbjct: 450 SNVKPDRHFYNVMI----DTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHG 505
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+RAA + +E +RG P +N ++ S+ W+ + + L KM
Sbjct: 506 YHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWD-----EVKILLGKM 552
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ +L M S V + +N +I+ F + + A++ Y M +P+ T
Sbjct: 435 GEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTW 494
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + G D + E F+E++ G LP Y +++ + +WD+ LL +M +
Sbjct: 495 NTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQS 554
Query: 122 -----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N ++ V G F+D + + + G YNAL+ A
Sbjct: 555 QGLLPNVVTYTTLVDIYGHSGRFNDAID------CLEAMKSAGLKPSATMYNALINAFAQ 608
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
GL E+A GL P L N L+
Sbjct: 609 RGLSEQAVNAYRVMISDGLRPSLLALNSLI 638
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + L M +G+ ++ +NA+I AF Q G E+A+ AY M P+
Sbjct: 574 SGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLA 633
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
L ++++ + E+ Q +K + + P V+ Y L+ + +++D + +EM
Sbjct: 634 LNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIRVDKFDKVPAVYEEM 692
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/209 (16%), Positives = 92/209 (44%), Gaps = 3/209 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAI--KAYVEMEKVRCDPNERTLEAVLSV 67
++SRM + G + +++ +I++ + + + + K Y E+E + + + L ++
Sbjct: 231 LMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILG 290
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ AG + + +++SG+ P + +++ R ++A + +EM +
Sbjct: 291 FAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPR 350
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ ++KG + + + + E + ++ G Y L++A +G E A +L
Sbjct: 351 IKAFNALLKG-YARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLL 409
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ R + P F ++++ S W+
Sbjct: 410 KQMEARNVQPNTFIFSRILASYRDRGEWQ 438
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ L M E+G+ N+ ++ A I + + F A K EM + PN+ ++
Sbjct: 505 EARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLI 564
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ YC G V E+ ++ + GIL Y +L+ K+++ DDA + EM I+
Sbjct: 565 NEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIA 624
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G +I G F N Q +FD++ EG + YN LL G E+A
Sbjct: 625 PDVFSYGVLING-FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+LDE + +GL P + ++
Sbjct: 684 LLDEMSVKGLHPNAVTYCTII 704
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%)
Query: 2 GLYK-----ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GL+K + + I M G+A + S+ +I F + G ++A + EM + P
Sbjct: 601 GLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP 660
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
N +L +C +G ++++KE E+ G+ P+ + YC ++ Y KS +A+ L
Sbjct: 661 NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLF 720
Query: 117 DEMHTNRISNIHQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
DEM + V ++ G +D + +F N +G +NAL+ +
Sbjct: 721 DEMKLKGLVPDSFVYTTLVDGCCRLND---VERAITIFGT-NKKGCASSTAPFNALINWV 776
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234
+ G E VL+ G F + N + +++ + + + G A ++M
Sbjct: 777 FKFGKTELKTEVLNRLMD-GSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNAN 835
Query: 235 MM 236
+M
Sbjct: 836 LM 837
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 10/221 (4%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYV-EMEKVRCDPNERTLEA 63
++ +++L M GV+ ++ +++ +I+ +G R +A K V EM + +
Sbjct: 294 EDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG-RNADAAKGLVHEMVSHGINIKPYMYDC 352
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+ V G+++++K F + +SG++P Y L+ Y + Y LL EM
Sbjct: 353 CICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRN 412
Query: 124 ISNIHQVTGQMIKG---EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I G ++KG D + + +V+ ++ G + Y L++
Sbjct: 413 IVISPYTYGTVVKGMCSSGDLDGAYNIVK----EMIASGCRPNVVIYTTLIKTFLQNSRF 468
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVD-VHRMWEGGAY 220
A RVL E ++G+ P++F +N L+ + RM E ++
Sbjct: 469 GDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSF 509
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 5/176 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ ++ +A+ M SG+ + ++ ++IE + + + + VEM+K + T
Sbjct: 361 GVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTY 420
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ C +G +D + +E+ +SG P+V+ Y L+ + +++R+ DA +L EM
Sbjct: 421 GTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKE 480
Query: 122 NRIS-NIHQVTGQMI---KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
I+ +I +I K + DE+ +VE V + L + G F + +EA
Sbjct: 481 QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA-FISGYIEA 535
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD----PNERTLEAVLSVYCF 70
++ G A ++ FNA+I + G+ E + + D PN+ T ++ C
Sbjct: 758 NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G ++ +KE F +++++ ++P+V+ Y LL Y K R + + + DE I H +
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIM 877
Query: 131 TGQMIKGEFDDESNWQ---MVEYVFDKLNC-EGYGLGMRFYNALLEALWCLGLRERAARV 186
+I + + +V+ +F K +G L + ALL +G E A +V
Sbjct: 878 YSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 937
Query: 187 LDEATKRGLFPE 198
++ + P+
Sbjct: 938 MENMVRLQYIPD 949
>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Vitis vinifera]
Length = 879
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ K+ A ++RM + +A + +++ VI+ + + + A K + EM K++C PN T
Sbjct: 533 GMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTY 592
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C G + S + F+E+++ G++P+V+ Y +L+ + K + DA +EM
Sbjct: 593 TSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLM 652
Query: 122 NR-----------ISNIHQVTGQMI--KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYN 168
N+ ++ + + I KG E+ M F ++ +G+ YN
Sbjct: 653 NKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYN 712
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPE 198
++L L G+ A ++ ++ T +G P+
Sbjct: 713 SILICLCQYGMFRTALQLSNKMTSKGCIPD 742
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 15/212 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +K +L M+ G+ N +N +I+A + G +A++ M + C P+ T
Sbjct: 288 GDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTY 347
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S C G V E+ + ++ G++P+ Y L+ Y K +D A L EM T
Sbjct: 348 NTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEM-T 406
Query: 122 NRISNIHQVT------GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
R VT G ++ GE D + + +K+ G YN L+ L
Sbjct: 407 ERGHKPDLVTYGALVHGLVVAGEVD------VALTIREKMLERGVFPDAGIYNILMSGL- 459
Query: 176 CLGLRERAAR-VLDEATKRGLFPELFRHNKLV 206
C + AA+ +L E + + P+ F + LV
Sbjct: 460 CKKFKLPAAKLLLAEMLDQSVLPDAFVYATLV 491
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 6/204 (2%)
Query: 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG 88
+++ + G+ EE K + C PN ++ YC G ++ + F E+K G
Sbjct: 210 MVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKG 269
Query: 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMV 148
LP+V Y ++ + K + LL EM++ ++ QV +I + + V
Sbjct: 270 FLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAV 329
Query: 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
E + + C G + YN L+ G A ++L++A +GL P NK ++
Sbjct: 330 ETIEGMIEC-GCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMP-----NKFSYT 383
Query: 209 VDVHRMWEGGAYTAISVWLNKMYE 232
+H + G Y S WL +M E
Sbjct: 384 PLIHAYCKQGGYDRASNWLIEMTE 407
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 83/196 (42%), Gaps = 15/196 (7%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G +++ A+I F + G F+ + +EM N + ++ G + ++
Sbjct: 269 GFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKA 328
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE-----MHTNRISNIHQVTG 132
E + + G P ++ Y L++ + + +A LL++ + N+ S +
Sbjct: 329 VETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHA 388
Query: 133 QMIKGEFDDESNW--QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+G +D SNW +M E G+ + Y AL+ L G + A + ++
Sbjct: 389 YCKQGGYDRASNWLIEMTE--------RGHKPDLVTYGALVHGLVVAGEVDVALTIREKM 440
Query: 191 TKRGLFPELFRHNKLV 206
+RG+FP+ +N L+
Sbjct: 441 LERGVFPDAGIYNILM 456
>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 606
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 2/194 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + V N ++N++I GG+ EAI +M PN T ++++ +C
Sbjct: 318 VFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFC 377
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G++ E+ + F +K G P+ Y ML+ Y K + DD + L +EM I
Sbjct: 378 KNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVG 437
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G N + + +FD+L +G + F+ L+E G +AA +L E
Sbjct: 438 TYNCLIAG-LCRNGNIEAAKKLFDQLTNKGLPDLVTFH-ILMEGYCSRGESRKAAMLLKE 495
Query: 190 ATKRGLFPELFRHN 203
+K GL P +N
Sbjct: 496 MSKMGLKPRHLTYN 509
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 22/222 (9%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +YK A+L M E+ V+ N +FN +I+ F + ++K + EM PN T
Sbjct: 275 GKMYK-ADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVIT 333
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++++ C G ++E+ ++ S+G+ P+++ Y L+ + K+ +A + D +
Sbjct: 334 YNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVK 393
Query: 121 TNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
++ +I G+ DD + +++ EG + YN L+ L
Sbjct: 394 GQGTRPTTRMYNMLIDAYCKLGKIDDGFALK------EEMEREGIVPDVGTYNCLIAGLC 447
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEG 217
G E A ++ D+ T +GL P+L V H + EG
Sbjct: 448 RNGNIEAAKKLFDQLTNKGL-PDL---------VTFHILMEG 479
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 8/218 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + + G + +N +I+A+ + G+ ++ EME+ P+ T
Sbjct: 380 GMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTY 439
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G ++ +K+ F ++ + G LP ++ + +L+ Y A LL EM
Sbjct: 440 NCLIAGLCRNGNIEAAKKLFDQLTNKG-LPDLVTFHILMEGYCSRGESRKAAMLLKEMSK 498
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG-YGLGMRFYNALLEALWCLGLR 180
+ H M+KG + E N + + ++ E + + YN LL+ G
Sbjct: 499 MGLKPRHLTYNIMMKG-YCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKL 557
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
E A +L+E ++GL P N++ + + M + G
Sbjct: 558 EDANMLLNEMLEKGLVP-----NRITYEIVKEEMVDKG 590
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 4/164 (2%)
Query: 46 YVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
Y EM + + PN T V++ C G ++++++ +++K G P+V+ Y L+ Y K
Sbjct: 211 YKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCK 270
Query: 106 ---SNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL 162
+ + A +L EM N +S +I G + D+ N VF ++ +
Sbjct: 271 LGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDD-NLPGSLKVFKEMLDQDVIP 329
Query: 163 GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ YN+L+ L G A + D+ G+ P L ++ L+
Sbjct: 330 NVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLI 373
>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
Length = 599
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 93/193 (48%), Gaps = 1/193 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++C + R+ G++ + ++ +++ F + G +A+ EM+K PN+ +
Sbjct: 174 EKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMI 233
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ Y G + + ++++ S+G+ P ++ Y +L+ + K+ R D A G+L+ + NR+
Sbjct: 234 MDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRL 293
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ ++ G + N Q VFD++ G G+ YN+LL L E A
Sbjct: 294 LPTIETYTSILDG-YVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENAR 352
Query: 185 RVLDEATKRGLFP 197
+L+E G+ P
Sbjct: 353 LMLNEMLANGVVP 365
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 100/207 (48%), Gaps = 6/207 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + M +G+ + +N ++ AF + GR ++A+ +E R P T
Sbjct: 240 GGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIET 299
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L Y G + ++ E F IK++G+ P V+ Y LL+ AK+ + ++A +L+EM
Sbjct: 300 YTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEML 359
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + + + +G + + + +F ++ E + + Y ALL+A G
Sbjct: 360 ANGVVPNERSYTALTEG-YARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAM 418
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVW 207
+RAA V + T GL +HN++ +
Sbjct: 419 QRAAEVFQQITDAGL-----KHNRITY 440
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M +GV N S+ A+ E + + G E+A + M+K + A+L C
Sbjct: 354 MLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACC 413
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+G + + E FQ+I +G+ + + YC +L +A+ A LL++M +
Sbjct: 414 KSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKH 466
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 80/183 (43%), Gaps = 5/183 (2%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK--EQFQE 83
+N++++A+ Q G E +ME+ N VL+ FA + DE K F
Sbjct: 125 YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLN--GFAEIRDEEKCLSFFHR 182
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143
+K+ G+ P+ Y ++ ++ K+ A +L+EM + +S + ++ G +
Sbjct: 183 LKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDG-YARGG 241
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
++ V++ + G + YN L+ A G ++A VL+ L P + +
Sbjct: 242 DFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYT 301
Query: 204 KLV 206
++
Sbjct: 302 SIL 304
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136
++ F+ +++S I P+V Y L+ YA++ + A +EM + I V +I
Sbjct: 36 ARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIIS 95
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
G + N + E+ F+K E G YN++++A G E +L + + G
Sbjct: 96 G-YASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGF 153
>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
[Arabidopsis thaliana]
gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 2/194 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + V N S+N++I GG+ EAI +M PN T A+++ +C
Sbjct: 318 VFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFC 377
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
++ E+ + F +K G +P+ Y ML+ Y K + DD + L +EM I
Sbjct: 378 KNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVG 437
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G N + + +FD+L +G + F+ L+E G +AA +L E
Sbjct: 438 TYNCLIAG-LCRNGNIEAAKKLFDQLTSKGLPDLVTFH-ILMEGYCRKGESRKAAMLLKE 495
Query: 190 ATKRGLFPELFRHN 203
+K GL P +N
Sbjct: 496 MSKMGLKPRHLTYN 509
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 8/217 (3%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ KE + + G + +N +I+A+ + G+ ++ EME+ P+ T
Sbjct: 381 MLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYN 440
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ C G ++ +K+ F ++ S G LP ++ + +L+ Y + A LL EM
Sbjct: 441 CLIAGLCRNGNIEAAKKLFDQLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKM 499
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG-YGLGMRFYNALLEALWCLGLRE 181
+ H ++KG + E N + + ++ E + + YN LL+ G E
Sbjct: 500 GLKPRHLTYNIVMKG-YCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLE 558
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A +L+E ++GL P N++ + + M + G
Sbjct: 559 DANMLLNEMLEKGLVP-----NRITYEIVKEEMVDQG 590
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 61/127 (48%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG E ++ +M +GV N ++NA+I F + +EA+ + ++ P R
Sbjct: 344 GGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRM 403
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ YC G +D+ +E++ GI+P V Y L+A ++ + A L D++
Sbjct: 404 YNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT 463
Query: 121 TNRISNI 127
+ + ++
Sbjct: 464 SKGLPDL 470
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%)
Query: 46 YVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
Y EM + + PN T V++ C G ++++++ +++K G P+V+ Y L+ Y K
Sbjct: 211 YKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCK 270
Query: 106 ---SNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL 162
+ + A +L EM N +S +I G + D+ N VF ++ +
Sbjct: 271 LGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDD-NLPGSMKVFKEMLDQDVKP 329
Query: 163 GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ YN+L+ L G A + D+ G+ P L +N L+
Sbjct: 330 NVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALI 373
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/239 (18%), Positives = 91/239 (38%), Gaps = 39/239 (16%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + + M + N +FN VI A + G+ +A +M+ C PN + ++
Sbjct: 206 DVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLI 265
Query: 66 SVYCFAG-----------------------------LVD---------ESKEQFQEIKSS 87
YC G L+D S + F+E+
Sbjct: 266 DGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQ 325
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
+ P+V+ Y L+ + +A + D+M + + +I G ++ +
Sbjct: 326 DVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEA 385
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
++ +F + +G R YN L++A LG + + +E + G+ P++ +N L+
Sbjct: 386 LD-MFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLI 443
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + IL RM E G+ + +N++I F + R EEA +EM + R PN T
Sbjct: 465 GRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTY 524
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A + Y AG ++ + F E+ S G+LP+V Y L+ + K +A+ + + +
Sbjct: 525 GAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILS 584
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEY--VFDKLNCEGYGLGMRFYNALLEALWCLGL 179
R+ Q +I G N +M E +F +L +G YN+L+ G
Sbjct: 585 RRVLQDVQTYSVLIHGL---SRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGN 641
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
++A+++L+E +G+ P++ +N L+
Sbjct: 642 VDKASQLLEEMCIKGINPDIVTYNILI 668
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 2/217 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + +L M + G+ ++NA+I+ F + G E+A + EM + N +
Sbjct: 293 REAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTL 352
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L+ C AG ++++ E QE+ G+ P Y +L+ + + A+ LLDEM ++
Sbjct: 353 LNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKL 412
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G N Q + ++ G Y L+ A G E +
Sbjct: 413 APTVLTYSVIING-LCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESR 471
Query: 185 RVLDEATKRGLFPELFRHNKLVWS-VDVHRMWEGGAY 220
+L+ ++G+ P++F +N L+ RM E Y
Sbjct: 472 MILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTY 508
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 8/208 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E I S + E G+ N+ ++N++I + G ++A + EM +P+ T
Sbjct: 605 GKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTY 664
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C AG ++ +K F +I+ G+ P+ + Y ++ Y KS A+ LL+EM
Sbjct: 665 NILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLL 724
Query: 122 NRISN---IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ I+ V E E + + + +K G+ + F N L+E G
Sbjct: 725 RGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEK----GFASTVSF-NTLIEGYCKSG 779
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
+ A +L+E ++ P + L+
Sbjct: 780 KLQEANHLLEEMIEKQFIPNHVTYTSLI 807
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 36/199 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK-----------------V 52
I+ M E GV +S +++ +IE +G A + EM+K
Sbjct: 368 IMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLC 427
Query: 53 RC------------------DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM 94
RC PN +++ + G V+ES+ + ++ GILP V
Sbjct: 428 RCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVF 487
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
CY L+ + K+ R ++A L EM R+ G I G + ++ + F++
Sbjct: 488 CYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDG-YSKAGEMEIADRYFNE 546
Query: 155 LNCEGYGLGMRFYNALLEA 173
+ G + Y AL+E
Sbjct: 547 MLSCGVLPNVGIYTALIEG 565
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M E G A ++ SFN +IE + + G+ +EA EM + + PN T +++ C
Sbjct: 753 LFQEMLEKGFA-STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNC 811
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
AG++ E+K + E++ ++P+ Y LL Y + L +EM
Sbjct: 812 KAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 861
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
ILSR V ++ +++ +I + G+ EA + E+++ PN T +++S C
Sbjct: 582 ILSRR----VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSC 637
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G VD++ + +E+ GI P ++ Y +L+ K+ + A L D++
Sbjct: 638 KQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDI 687
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L M E N ++ ++I+ + G EA + ++EM++ P +T
Sbjct: 779 GKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTY 838
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++L Y G + E F+E+ + GI P M Y +++ Y + +A L DE+
Sbjct: 839 TSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEI 896
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 11/213 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +L M G + +++++I + G +A K + EM++ P+ T
Sbjct: 163 GRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITF 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ AG VD++ E E+K G+ P V+ Y L+A + K +AY LLDEM
Sbjct: 223 TALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKR 282
Query: 122 NR-----ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N ++ +TG + + D+ V K+ EG YN L+ L
Sbjct: 283 NGCKPDVVTYSCLITGLIKASQLDEACQ------VLKKMEKEGCPPDTITYNTLINGLGK 336
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
GL A R+ D +G P++ ++ L+ ++
Sbjct: 337 AGLLNDAGRLFDRMKSKGCNPDVVTYSTLITAL 369
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+++ M G N ++N +++ + G+F+EA++ EM C P+ RT ++S
Sbjct: 66 VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG + E+ F E++ G +P Y L+ K R A LL+EM +
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVM 185
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G D + + +F ++ G + AL++AL G + A +LDE
Sbjct: 186 TYSSLITGLGKDGETVKAFK-LFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDE 244
Query: 190 ATKRGLFPELFRHNKLV 206
+RG+ P + +N L+
Sbjct: 245 MKERGVKPGVVTYNALI 261
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 15/211 (7%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L M +G + +++ +I + + +EA + +MEK C P+ T ++
Sbjct: 272 EAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLI 331
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ AGL++++ F +KS G P V+ Y L+ K+ R + A L +EM + I
Sbjct: 332 NGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQ 391
Query: 126 -------NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+I V G+ G+ DD + +F ++ +G + YNA L +L G
Sbjct: 392 PDLFTYCSIITVLGKA--GQVDD------ADRLFSEMRGKGLSPDVITYNAFLNSLGRGG 443
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ A ++ ++ + GL P++ ++ L+ +
Sbjct: 444 RFKEARKIFEDMKESGLLPDVATYDALLLGL 474
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 15/207 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M G+ + ++ ++I + G+ ++A + + EM P+ T A L+
Sbjct: 381 LFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLG 440
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F+++K SG+LP V Y LL +K+ DDA GLL E+ I Q
Sbjct: 441 RGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKEL-------IEQ 493
Query: 130 VTGQMIKGEFDD----ESNWQMVEYVFDKL---NCEGYGLGMRFYNALLEALWCLGLRER 182
+FD+ ++W V+ + L N +G G YNAL++AL G
Sbjct: 494 GCA-FDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSE 552
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSV 209
A L++ ++G P++ ++ L+ ++
Sbjct: 553 AFNTLEDLKEQGGKPDIVSYSSLISAL 579
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 11/200 (5%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L + CQ +L +M + G ++ ++N +I + G +A + + M+ C+P+ T
Sbjct: 305 LDEACQ-VLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYS 363
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ A V+ + F+E++S GI P + YC ++ V K+ + DDA L EM
Sbjct: 364 TLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGK 423
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+S +T ++ +F+ + G + Y+ALL LGL +
Sbjct: 424 GLSP-DVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALL-----LGLSK- 476
Query: 183 AARVLDEATKRGLFPELFRH 202
+ +D+A GL EL
Sbjct: 477 -TKEVDDAC--GLLKELIEQ 493
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 23/191 (12%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE + I M ESG+ + +++A++ + ++A E+ + C +
Sbjct: 442 GGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLK 501
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+ L + G VDE+ E Q S G+ P Y L+ AK+ R +A+ L+++
Sbjct: 502 FDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLK 561
Query: 120 ----------HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNA 169
+++ IS + Q TGQ+ ++ ++++E +++ G L R Y+
Sbjct: 562 EQGGKPDIVSYSSLISALGQ-TGQI-------DTAFELLE----EMSKRGLKLSPRSYSN 609
Query: 170 LLEALWCLGLR 180
L+ L G R
Sbjct: 610 LVRKLQDWGAR 620
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 11/159 (6%)
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
PN T ++L+ AG +E++ F+E+K++ P V+ Y L+ ++ +W+ A +
Sbjct: 7 PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66
Query: 116 LDEMHTNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
+ EM ++ G+FD+ + ++ G +R YN L
Sbjct: 67 VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALR------LLAEMRDNGCVPDVRTYNCL 120
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ L G A + E +RG P+ F +N L++ +
Sbjct: 121 ISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGL 159
>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 503
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 4/209 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG KE A+ M + G++ + F I+AF GR +EA+ EMEK+ N
Sbjct: 152 GGSLKEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVI 211
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY--AKSNR-WDDAYGLLD 117
++ Y G ++E++ E++ GI P+V Y L+ Y AK R + A GL++
Sbjct: 212 YNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIE 271
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM + + VT M+ G + E + E VF+++ G Y AL+ A
Sbjct: 272 EMEASGLYP-DVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAER 330
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
E+AAR + K+G+ P + + L+
Sbjct: 331 RCPEKAARAFEMIRKQGVNPTVETYTALL 359
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 86/201 (42%), Gaps = 1/201 (0%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
+ ++ M SG+ + +F ++ A+ G E+A + + M+ PN + A+++
Sbjct: 266 AEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALIN 325
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
Y +++ F+ I+ G+ P+V Y LL Y ++ + + M
Sbjct: 326 AYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVA 385
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+VT I F + ++ + ++ +G+ + YN LL + G +A+ +
Sbjct: 386 T-RVTYMTILDAFQKQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDI 444
Query: 187 LDEATKRGLFPELFRHNKLVW 207
L E G P+ F + L++
Sbjct: 445 LLEMKTAGFLPDSFTYCTLIY 465
>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
Length = 823
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 19/223 (8%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + M E+G N ++NA+++ + +GG +EA + VEME PN T +
Sbjct: 301 QEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNEL 360
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-TNR 123
++ Y AGL DE+ + + S G+ P YC L++ + ++ R++ A EM TN
Sbjct: 361 IAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNC 420
Query: 124 ISNIHQVTGQM---IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
NI VT + I G + + V + NC + +N+LL++ G+
Sbjct: 421 TPNI--VTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTP---DLVTWNSLLKSFGNCGML 475
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV----------WSVDVHR 213
+ V E + G P + N L+ +SVD+++
Sbjct: 476 TEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYK 518
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 64/115 (55%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + Q++ M + ++ + ++N +I A Q +EA++ + EM++ C PN T
Sbjct: 262 GDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVT 321
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
A+L VY G+ E+ E E++++GI P+++ Y L+A YA++ D+A L
Sbjct: 322 YNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAAL 376
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 65/123 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E Q L+++ ++G + + FNA+I + G E A+K E+ K + P+ T
Sbjct: 614 GMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTY 673
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S+Y G+ +++E E++ +G P+++ Y LL Y K R DDA + +M
Sbjct: 674 NCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVA 733
Query: 122 NRI 124
R+
Sbjct: 734 ARV 736
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 2/208 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++C+ + M+E+G+ + +I ++ G+F + K E+EK P L
Sbjct: 543 GRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGIL 602
Query: 62 -EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ + YC G+ +E++ ++ +G P + + ++++ AK + A LL+E+
Sbjct: 603 CKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIR 662
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ VT + + E + E V ++ G + YN LL + G
Sbjct: 663 KAQLKP-DGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRM 721
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWS 208
+ AARV + + P+ F N LV S
Sbjct: 722 DDAARVFGDMVAARVRPDNFTFNTLVGS 749
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 92/210 (43%), Gaps = 10/210 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + M +G D+FN +IE + + G + ++ Y + + P T
Sbjct: 473 GMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTF 532
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ G + ++ QE+ +G+ S C+ L+ YA S ++ +DE+
Sbjct: 533 AALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEK 592
Query: 122 NRISNIHQVTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ + + + K D+E+ + ++L G+ ++ +NA++
Sbjct: 593 SAKQPLSGILCKTFVLAYCKCGMDNEA-----QLALNQLYDNGHSPDIKVFNAMISMCAK 647
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G ERA ++L+E K L P+ +N L+
Sbjct: 648 RGWIERAVKLLEEIRKAQLKPDGVTYNCLM 677
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 53/105 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+Y + + ++S M +G A N ++N ++ ++ + GR ++A + + +M R P+ T
Sbjct: 684 GMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTF 743
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
++ Y GL E+ + + G P+ + + LL Y ++
Sbjct: 744 NTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGYNRN 788
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 44/236 (18%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL E A+ + G+ + ++ +I AF + R+E+A++ + EM K C PN T
Sbjct: 367 AGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVT 426
Query: 61 LEAVLSVY--------------------CFA---------------GLVDESKEQFQEIK 85
++ +Y C G++ E F+E+K
Sbjct: 427 YNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMK 486
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWD---DAY-GLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+G +P V + +L+ Y + D D Y GLL + + + +
Sbjct: 487 RAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAR----- 541
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
E WQ E V ++ G L + L+ + G + + +DE K P
Sbjct: 542 EGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQP 597
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ E + M G N+ ++N +++ + ++G ++ + EM+ + P++ T
Sbjct: 229 FDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYN 288
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ E+ FQE+K +G P+ + Y LL VY K +A LL EM
Sbjct: 289 TMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAA 348
Query: 123 RIS 125
IS
Sbjct: 349 GIS 351
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 9/228 (3%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M G+ N ++N++I G+ +EA+ +M + PN T A+++
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+C ++ E++E +I G+ P+V+ + L+ Y K+ R DDA+ L M +
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPN 438
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+I G F E N + + ++ G + YN L++AL G +A R+L
Sbjct: 439 VSTYNCLIVG-FCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLL 497
Query: 188 DEAT---KRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
DE T K+G R N + ++V + G + LN+M E
Sbjct: 498 DEMTLMEKKGR-----RANIVTYNVLIKGFCNKGKLEEANRLLNEMLE 540
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 1/194 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
R + G ++ S N ++ + + GR Y EM + R N T + V++ C G
Sbjct: 184 RAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVG 243
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++ + +++K+ G PSV+ Y ++ Y K+ + A LL EM RI + +++T
Sbjct: 244 KFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRI-HPNEITF 302
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ F + N + VF+++ +G + YN+L+ L G + A + D+ +
Sbjct: 303 NILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSG 362
Query: 193 RGLFPELFRHNKLV 206
GL P + +N L+
Sbjct: 363 MGLKPNVVTYNALI 376
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 87/209 (41%), Gaps = 44/209 (21%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ ++ M G + + ++N +I+ + + G+ +A EM R PNE T
Sbjct: 243 GKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITF 302
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C V +K+ F+E++ G+ P+V+ Y L+ + + D+A GL D+M
Sbjct: 303 NILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMS- 361
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR----FYNALLEALWCL 177
G+G++ YNAL+
Sbjct: 362 ---------------------------------------GMGLKPNVVTYNALINGFCKK 382
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
+ + A +LD+ KRGL P + N L+
Sbjct: 383 KMLKEAREMLDDIGKRGLAPNVITFNTLI 411
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 38/216 (17%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ KE + +L + + G+A N +FN +I+A+ + GR ++A M PN T
Sbjct: 384 MLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYN 443
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ +C G V E+++ +E++ +G+ ++ Y +L+ K A LLDEM
Sbjct: 444 CLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTL- 502
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ +G + YN L++ G E
Sbjct: 503 --------------------------------MEKKGRRANIVTYNVLIKGFCNKGKLEE 530
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A R+L+E ++GL P N+ + + M E G
Sbjct: 531 ANRLLNEMLEKGLIP-----NRTTYDILRDEMMEKG 561
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + IL RM E G+ + +N++I F + R EEA +EM + R PN T
Sbjct: 474 GRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTY 533
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A + Y AG ++ + F E+ S G+LP+V Y L+ + K +A+ + + +
Sbjct: 534 GAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILS 593
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEY--VFDKLNCEGYGLGMRFYNALLEALWCLGL 179
R+ Q +I G N +M E +F +L +G YN+L+ G
Sbjct: 594 RRVLQDVQTYSVLIHGL---SRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGN 650
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
++A+++L+E +G+ P++ +N L+
Sbjct: 651 VDKASQLLEEMCIKGINPDIVTYNILI 677
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 2/217 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + +L M + G+ ++NA+I+ F + G E+A + EM + N +
Sbjct: 302 REAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTL 361
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L+ C AG ++++ E QE+ G+ P Y +L+ + + A+ LLDEM ++
Sbjct: 362 LNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKL 421
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G N Q + ++ G Y L+ A G E +
Sbjct: 422 APTVLTYSVIING-LCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESR 480
Query: 185 RVLDEATKRGLFPELFRHNKLVWS-VDVHRMWEGGAY 220
+L+ ++G+ P++F +N L+ RM E Y
Sbjct: 481 MILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTY 517
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 8/208 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E I S + E G+ N+ ++N++I + G ++A + EM +P+ T
Sbjct: 614 GKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTY 673
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C AG ++ +K F +I+ G+ P+ + Y ++ Y KS A+ LL+EM
Sbjct: 674 NILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLL 733
Query: 122 NRISN---IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ I+ V E E + + + +K G+ + F N L+E G
Sbjct: 734 RGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEK----GFASTVSF-NTLIEGYCKSG 788
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
+ A +L+E ++ P + L+
Sbjct: 789 KLQEANHLLEEMIEKQFIPNHVTYTSLI 816
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 2/165 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M E G A ++ SFN +IE + + G+ +EA EM + + PN T +++ C
Sbjct: 762 LFQEMLEKGFA-STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNC 820
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG++ E+K + E++ ++P+ Y LL Y + L +EM I +
Sbjct: 821 KAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEP-DK 879
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+T ++ + E N + D++ +G + + Y+AL++AL
Sbjct: 880 MTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQAL 924
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 36/199 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK-----------------V 52
I+ M E GV +S +++ +IE +G A + EM+K
Sbjct: 377 IMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLC 436
Query: 53 RC------------------DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM 94
RC PN +++ + G V+ES+ + ++ GILP V
Sbjct: 437 RCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVF 496
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
CY L+ + K+ R ++A L EM R+ G I G + ++ + F++
Sbjct: 497 CYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDG-YSKAGEMEIADRYFNE 555
Query: 155 LNCEGYGLGMRFYNALLEA 173
+ G + Y AL+E
Sbjct: 556 MLSCGVLPNVGIYTALIEG 574
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 80/174 (45%), Gaps = 1/174 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +I A + G ++A + +EM + C PN T ++ C A L+DE+ E + +
Sbjct: 217 TYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSM 276
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G++P + Y +L+ + R +A +L EM + +I G F + +
Sbjct: 277 VDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDG-FMRQGD 335
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+ + D++ G + +N LL + G E+A ++ E ++G+ P+
Sbjct: 336 IEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPD 389
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 85/193 (44%), Gaps = 1/193 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L M E N ++ ++I+ + G EA + ++EM++ P +T
Sbjct: 788 GKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTY 847
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L Y G + E F+E+ + GI P M Y +++ Y + +A L DE+
Sbjct: 848 TSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILV 907
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+ E +++++ + +++ G+ LG+ + + G +
Sbjct: 908 KGMPMSVAAYDALIQALCKKEEFFEVLK-LLNEIGESGFRLGLPTCSVIARGFQIAGNMD 966
Query: 182 RAARVLDEATKRG 194
AA VL K G
Sbjct: 967 EAAEVLRSMVKFG 979
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
ILSR V ++ +++ +I + G+ EA + E+++ PN T +++S C
Sbjct: 591 ILSRR----VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSC 646
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G VD++ + +E+ GI P ++ Y +L+ K+ + A L D++
Sbjct: 647 KQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDI 696
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 8/230 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + +L M E G + N ++N +I + +EAI+ M P+ T
Sbjct: 229 GNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTY 288
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ +++ +C E+K E+ G+ P + Y L+ + + + A+ + DEM
Sbjct: 289 DILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVA 348
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
I + ++ G + +E + ++ +G + Y+ L+E C G
Sbjct: 349 CGIEANLIIWNTLLNGVCKAGKMEKALE-IMQEMMEKGVEPDSQTYSLLIEG-HCRGQNM 406
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
RA +LDE KR L P + L +SV ++ + G + L +M
Sbjct: 407 ARAFELLDEMKKRKLAPTV-----LTYSVIINGLCRCGNLQGTNAILREM 451
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 2/181 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G+A ++ +FNA+I+ F + G+ EA + +M PN T ++ +C G
Sbjct: 783 MVEEGIA-STPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGN 841
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E+++ F E++ ++P+V+ Y LL Y + R + + L DEM I
Sbjct: 842 IKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSV 901
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
M+ E NW + D + EG + Y L++AL +VLDE K+
Sbjct: 902 MVDAHL-KEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQ 960
Query: 194 G 194
G
Sbjct: 961 G 961
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +I A+ + G+ EE +ME+ C PN T V++ C AG VDE+ E + +
Sbjct: 234 TYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSM 293
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ G+LP Y L+ + + R + +LDEM+T + H +I G F +S+
Sbjct: 294 ANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALING-FVKQSD 352
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
V +++ L Y AL+ L +G E+A + E T G+ P++ +N
Sbjct: 353 IGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNC 412
Query: 205 LV 206
L+
Sbjct: 413 LI 414
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E IL M + G++ + +N VI F + G+ EE VEM PN T
Sbjct: 491 GRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTY 550
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A + YC AG + ++ F E+ SGI P+ + L+ Y K A+ M
Sbjct: 551 GAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLD 610
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ Q +I G Q VF +L +G + Y +L+ L G +
Sbjct: 611 QGVLPDVQTHSVLIHG-LSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLK 669
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + D+ K+G+ P + +N L+
Sbjct: 670 AAFELHDDMCKKGINPNIVTYNALI 694
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 7/192 (3%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G+ N + +++ + GRFEEAIK M+ P+ V+ +C AG ++E
Sbjct: 472 GLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEG 531
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
K E+ + G+ P+V Y + Y ++ A EM + I+ + +I G
Sbjct: 532 KSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDG 591
Query: 138 EFDDESNWQMVEYVFDKLNC---EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
D + + F K C +G ++ ++ L+ L G + A V E +G
Sbjct: 592 YCKDGNTTK----AFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKG 647
Query: 195 LFPELFRHNKLV 206
L P++F + L+
Sbjct: 648 LVPDVFTYTSLI 659
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 9/201 (4%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+ E G+ARNS +++ +I + + EA + + M+ V P+ A++ C AG
Sbjct: 713 IPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGN 772
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+++ F + GI S + L+ + K + +AY L+++M N I+ H VT
Sbjct: 773 TEKALSLFLGMVEEGI-ASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNH-VTYT 830
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ N + E +F ++ + Y +LL +G R + DE R
Sbjct: 831 ILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVAR 890
Query: 194 GLFPELFRHNKLVWS--VDVH 212
G+ P+ L WS VD H
Sbjct: 891 GIKPD-----DLAWSVMVDAH 906
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 63/124 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + + S M+ G+ + ++N +IE + + E+A + +E++K N
Sbjct: 386 GDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMC 445
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ C G + + E FQE+ S G+ P+++ Y ++ K R+++A +L M
Sbjct: 446 GAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKD 505
Query: 122 NRIS 125
+S
Sbjct: 506 QGLS 509
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 1/190 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ M ++ + N ++ +IE G +EA + ++EM+K PN T ++L
Sbjct: 809 EAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLL 868
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
Y G E F E+ + GI P + + +++ + K W A L+D+M + +
Sbjct: 869 HGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGV- 927
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
N+ + ++ +N V V D++ +G L + L+ G + A R
Sbjct: 928 NVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALR 987
Query: 186 VLDEATKRGL 195
VL+ + L
Sbjct: 988 VLESMVRSFL 997
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 1/194 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + +L M E G N +++ VI + G +EA++ M P+
Sbjct: 246 GKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIY 305
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C E K E+ + G+ P + Y L+ + K + A+ + +EM
Sbjct: 306 ATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFA 365
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+I ++ T + + + E +F ++ G ++ YN L+E + + E
Sbjct: 366 RKIK-LNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNME 424
Query: 182 RAARVLDEATKRGL 195
+A +L E K L
Sbjct: 425 KAYELLIEIKKENL 438
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 106/242 (43%), Gaps = 39/242 (16%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME---------- 50
G +YK AIL M E+ V+ NS +FN +I+ F + A+K + EM+
Sbjct: 282 GKMYK-ADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVT 340
Query: 51 -----------------KVRCD--------PNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
KV D PN T A+++ YC L++E++E F I
Sbjct: 341 YNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIG 400
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
G+ P+V+ + LL Y K + ++A+ L M +I G F E
Sbjct: 401 KQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVG-FCREGKM 459
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEATKRGLFPELFRHNK 204
+ V+ + +++ C G YN L+ A WC ++AAR++DE +GL P +N
Sbjct: 460 EEVKNLLNEMQCRGVKADTVTYNILISA-WCEKKEPKKAARLIDEMLDKGLKPSHLTYNI 518
Query: 205 LV 206
L+
Sbjct: 519 LL 520
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 4/185 (2%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S N ++ A + F Y EM + + PN T V++ C G ++++ + ++
Sbjct: 197 SCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDM 256
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAY---GLLDEMHTNRISNIHQVTGQMIKGEFDD 141
K G P+V+ Y L+ Y K R Y +L EM N++S + VT ++ F
Sbjct: 257 KVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSP-NSVTFNVLIDGFCK 315
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+ N VF+++ +G + YN+L+ L G A +LDE L P +
Sbjct: 316 DENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVIT 375
Query: 202 HNKLV 206
+N L+
Sbjct: 376 YNALI 380
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 6/216 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L +E + + + + G+ N +FN ++ + + G+ EEA M + PN T
Sbjct: 388 LLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYN 447
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ +C G ++E K E++ G+ + Y +L++ + + A L+DEM
Sbjct: 448 CLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDK 507
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ H ++ G + E N + + ++ EG + YN L++ G E
Sbjct: 508 GLKPSHLTYNILLNG-YCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLED 566
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A +L+E ++GL P N+ + + M E G
Sbjct: 567 ANGLLNEMLEKGLIP-----NRTTYEIIKEEMMEKG 597
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 61/118 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + +L+ M GV ++ ++N +I A+ + ++A + EM P+ T
Sbjct: 457 GKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTY 516
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L+ YC G + + ++++ G +V+ Y +L+ Y + + +DA GLL+EM
Sbjct: 517 NILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEM 574
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 80/200 (40%), Gaps = 4/200 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M ++ N +FN VI + G+ +A +M+ PN T ++ YC
Sbjct: 217 VYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYC 276
Query: 70 FAGLVD---ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
G V ++ +E+ + + P+ + + +L+ + K A + +EM + +
Sbjct: 277 KMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKP 336
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
++ G +E + + D++ + YNAL+ L E A +
Sbjct: 337 TVVTYNSLVNG-LCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEAREL 395
Query: 187 LDEATKRGLFPELFRHNKLV 206
D K+GL P + N L+
Sbjct: 396 FDNIGKQGLTPNVITFNTLL 415
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G L +E + ++M S + ++NA+++ + + G + EA EME C PN T
Sbjct: 201 GSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVT 260
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+LS + AGL + + E + S GI P V Y LL+ Y+++ + + A + ++M
Sbjct: 261 YNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMR 320
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T+ + + T + G N+ + +F+ + G + +N+LL A G+
Sbjct: 321 TSNCTP-NSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMY 379
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+V K G P+ N L+
Sbjct: 380 SEVLKVFRGMKKAGFEPDKATFNILI 405
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 4/205 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR-FEEAIKAYVEMEKVRCDPNERTLE 62
+KE +M E+G + ++N +I+ + + GR +E ++ + EM+ P+E T
Sbjct: 133 FKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYN 192
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ L +E+ E F ++KSS P + Y LL VY K+ +++A +L EM +
Sbjct: 193 TAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESA 252
Query: 123 R-ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ NI VT + F + D + +G + Y +LL A G E
Sbjct: 253 GCLPNI--VTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVE 310
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A + ++ P F N L+
Sbjct: 311 QAMEIYNQMRTSNCTPNSFTFNALI 335
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 9/209 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+Y E + M ++G + +FN +IEA+ + G ++A+ Y M + C P+ T
Sbjct: 377 GMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATF 436
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ G + ++ E+ S P+ + Y +L YA + ++D +HT
Sbjct: 437 NTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHT 496
Query: 122 NRISNIHQVTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ + + K DE+ E F + GY +NA++
Sbjct: 497 IYVPFTKILLKTFVLVYSKCSLVDEA-----EDAFLAMRHHGYLSDTSTFNAMISMYGKK 551
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G+ ++A GL P++ +N L+
Sbjct: 552 GMMDKATDTFALLRSTGLEPDVVTYNCLM 580
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 59/117 (50%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E I M GV + ++N+++ AF + G + E +K + M+K +P++ T
Sbjct: 344 FSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNI 403
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y G D++ + + +G P + + LLA A+ RW+ A +LDE++
Sbjct: 404 LIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELN 460
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 9/192 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ I ++M S NS +FNA+I + F E + + +M+ +P+ T
Sbjct: 306 AGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVT 365
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L + G+ E + F+ +K +G P + +L+ Y + D A + D M
Sbjct: 366 WNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGML 425
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
T ++ + + + + E W+ E + D+LN Y Y ++L A
Sbjct: 426 QAGCTPDLATFNTLLAALAR-----EGRWEHAELILDELNRSSYKPNDIAYASMLHAYAN 480
Query: 177 LGLRERAARVLD 188
G E+ ++D
Sbjct: 481 GGELEKLKEMVD 492
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 88/198 (44%), Gaps = 2/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + E G + ++ ++I A + +F+EA+ + +M++ P+ T ++ +Y
Sbjct: 104 LFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYG 163
Query: 70 FAGLVDES-KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G E+ E F+E+K+ GI P Y + A + ++A L +M ++ +
Sbjct: 164 KKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTP-D 222
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+VT + + + V ++ G + YN LL A GL AA + D
Sbjct: 223 RVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKD 282
Query: 189 EATKRGLFPELFRHNKLV 206
+G+ P++F + L+
Sbjct: 283 SMVSKGIEPDVFTYTSLL 300
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+Y++C+A L +G + S+N VI ++ + G+ A + + EM P+ T
Sbjct: 587 GMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTY 646
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ Y G+ E+ + + +G P + Y L+ Y K ++++ +L + +
Sbjct: 647 NTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKFEEVERILKFIKS 706
Query: 122 NRISNIHQVTGQMIKGEFDD 141
+ N + + I DD
Sbjct: 707 SD-PNFSKAAYRRIAARVDD 725
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 36/167 (21%)
Query: 40 EEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99
+EA A++ M + T A++S+Y G++D++ + F ++S+G+ P V+ Y L
Sbjct: 520 DEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCL 579
Query: 100 LAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159
+ +Y + + L E M G+ D ++ V + + K
Sbjct: 580 MGMYGREGMYRKCEATLREC--------------MAAGQTPDLVSYNTVIFSYSK----- 620
Query: 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G A R+ E G+ P+ F +N V
Sbjct: 621 -----------------HGQLSSATRIFHEMVSNGIQPDSFTYNTFV 650
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M E G+ N +F A+I+ F + G ++A+ A EM + R P+ A+++ YC
Sbjct: 319 LVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYC 378
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +DE++E +E+++ G+ P V+ Y +L+ Y K+ A+ L +M N +
Sbjct: 379 MVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAI 438
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I+ +E +F + G Y +L++ G ERA + DE
Sbjct: 439 TYSSLIR-VLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDE 497
Query: 190 ATKRGLFPELFRHNKLV 206
K G+ P++ ++ L+
Sbjct: 498 MVKAGVLPDVVTYSVLI 514
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 15/216 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M E G+ N +FN+V+ + GR E+A K + EM K P+ + ++ YC
Sbjct: 214 LVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYC 273
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
G E+ F E+ GI+P V+ + L+ V K+ + A GL+ EM N I
Sbjct: 274 KVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEI 333
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + G KG DD + V + C + YNAL+ +G + A
Sbjct: 334 TFTALIDGFCKKGFLDDA-----LLAVREMRQCR-IQPSVVCYNALINGYCMVGRMDEAR 387
Query: 185 RVLDEATKRGLFPELFRHNKLVWSV----DVHRMWE 216
++ E +G+ P++ ++ ++ + D H ++
Sbjct: 388 ELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQ 423
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 1/182 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M GVA N ++N ++ A G +EA+ +M CDPN T +++ +C AG
Sbjct: 148 MLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGE 207
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
VD ++ ++ G+ P+++ + ++ K+ R +DA + DEM ++ V+
Sbjct: 208 VDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAP-DGVSYN 266
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ G + VF ++ +G + + +L+ + G ERA ++ E +R
Sbjct: 267 TLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRER 326
Query: 194 GL 195
GL
Sbjct: 327 GL 328
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 58/108 (53%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M E+GV ++ +++++I + R +A + M + P+E T +++ +C G
Sbjct: 427 QMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEG 486
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ + E+ +G+LP V+ Y +L+ +KS R +A LL +++
Sbjct: 487 NVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLY 534
>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L + SG++ + + AVI A GR EA + EM+ P R +L Y
Sbjct: 279 LGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVK 338
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
AG++ +++ E++ SG+ P Y +L+ Y+ + RW+ A +L EM N I V
Sbjct: 339 AGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYV 398
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+++ + D WQ V ++ G FYN +++ + A D+
Sbjct: 399 FSRIL-ASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKM 457
Query: 191 TKRGLFPELFRHNKLV 206
G+ P+ N L+
Sbjct: 458 LSEGIQPDTVTWNTLI 473
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 96/216 (44%), Gaps = 1/216 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +AI M ++G+ + ++N +++ + + G ++A EME+ P+E T
Sbjct: 304 SGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECT 363
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y AG + ++ +E++++ I+P+ + +LA Y W ++ +L EM
Sbjct: 364 YSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMK 423
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + MI F S FDK+ EG +N L++ L
Sbjct: 424 NSGVRPDRHFYNVMI-DTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELH 482
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
ERA + +E ++G P + N ++ S W+
Sbjct: 483 ERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWD 518
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ +L M SGV + +N +I+ F + + A+ + +M P+ T
Sbjct: 410 GEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTW 469
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C A L + ++E F+E+ G P V + +++ + + RWDD L+ M +
Sbjct: 470 NTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRS 529
Query: 122 -NRISNIHQVTGQM----IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ N+ T + G F D +E + D + G YNAL+ A
Sbjct: 530 LGLLPNVVTYTTLIDIYGKSGRFSDA-----IECLED-MKSAGLKPSSTMYNALINAYAQ 583
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
GL E+A L P L N L+
Sbjct: 584 KGLSEQAVNAFRLMRADSLKPSLLALNSLI 613
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/212 (19%), Positives = 93/212 (43%), Gaps = 9/212 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAI--KAYVEMEKVRCDPNERTLEA---V 64
++SRM + G + +++ +I++ + R + I K Y E ++CD E ++ +
Sbjct: 206 LISRMRQDGYPSDFVNYSLIIQSLVRSNRIDSPILQKLYSE---IQCDKLELDVQLSNDI 262
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ + AG +++ E +++SG+ P +++ S R +A + +EM N +
Sbjct: 263 IVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGL 322
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ ++KG + + E++ ++ G Y+ L++A G E A
Sbjct: 323 KPKTRAYNGLLKG-YVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESAR 381
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
VL E + P + ++++ S W+
Sbjct: 382 IVLKEMEANNIMPNSYVFSRILASYRDRGEWQ 413
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 56/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + L M +G+ +S +NA+I A+ Q G E+A+ A+ M P+
Sbjct: 549 SGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLA 608
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
L ++++ + E+ + +K + + P V+ Y L+ + ++++ + +EM
Sbjct: 609 LNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIRVDKFNKVPSVYEEM 667
>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
Length = 642
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 10/235 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK----VRCDPN 57
GL +E + ++ RM G+A N +FN+ I A + GR +A + + +M++ P+
Sbjct: 221 GLVEEAERLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYRIFKDMQEDWQHGLPRPD 280
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
+ T + +LS +C AG VDE++ ++ G L V Y L+ ++ R +A+ LL
Sbjct: 281 QVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAHELLR 340
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM RI + + T +I E V + + + Y +LL A
Sbjct: 341 EMAHERI-HPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSK 399
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
G A R+LDE ++G P F +N L+ S +W G T L +M E
Sbjct: 400 GNIAAANRILDEMAQKGCAPNSFTYNVLLQS-----LWRAGRTTEAERLLERMSE 449
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 11/213 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
R+ E+ RN SF + + + GR +A+K M + N V++ +C G
Sbjct: 166 RVFEAMPVRNEFSFGILARGYCRAGRSVDALKVLDGMPSM----NLVVCNTVVAGFCKEG 221
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH---TNRISNIHQ 129
LV+E++ + ++ G+ P+V+ + ++ K+ R DAY + +M + + Q
Sbjct: 222 LVEEAERLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYRIFKDMQEDWQHGLPRPDQ 281
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT ++ F D + D + C G+ + YN L L G A +L E
Sbjct: 282 VTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAHELLRE 341
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTA 222
+ P + +N +V + EG A+ A
Sbjct: 342 MAHERIHPNSYTYNIIVSGL----CKEGKAFDA 370
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 85/230 (36%), Gaps = 47/230 (20%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + ++ M G R +S+N + + GR EA + EM R PN T
Sbjct: 294 AGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAHELLREMAHERIHPNSYT 353
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S C G +++ I+S + P V+ Y LL Y A +LDEM
Sbjct: 354 YNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMA 413
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+G YN LL++LW G
Sbjct: 414 Q------------------------------------KGCAPNSFTYNVLLQSLWRAGRT 437
Query: 181 ERAARVLDEATKRG----------LFPELFRHNKLVWSVD-VHRMWEGGA 219
A R+L+ +++G + L R++KL ++ V MWE G+
Sbjct: 438 TEAERLLERMSEKGYSLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEGS 487
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 82/206 (39%), Gaps = 24/206 (11%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQG---------------------GRF 39
G E + +L RMSE G + ++ N +I+ + GR
Sbjct: 434 AGRTTEAERLLERMSEKGYSLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEGSTALGRL 493
Query: 40 EEAIKAYVEMEKV--RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC 97
+ + V + RC P+ T ++S C G DE+K++ E+ I P + Y
Sbjct: 494 GNSFLSVVSDSSISQRCLPDRITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYD 553
Query: 98 MLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC 157
+ Y K + A +L +M + + +I+G F+++ + + ++
Sbjct: 554 TFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRG-FEEKHKSDEIMKLMSEMEE 612
Query: 158 EGYGLGMRFYNALLEALWCLGLRERA 183
+G + YN+L+++ G+ R
Sbjct: 613 KGVSPNVLTYNSLIKSFCQQGMLTRP 638
>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Brachypodium distachyon]
Length = 800
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 106/263 (40%), Gaps = 39/263 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E A + G ++NA+++ F + G + EA++ EME+ C P+ T
Sbjct: 272 GLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTY 331
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ Y AG +E+ + + S GILP+ Y ++ Y + + D+A L D M
Sbjct: 332 NELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKK 391
Query: 122 N--------------------RISNIHQVTGQMIK-GEFDDESNWQMVEYVFDKLNCEGY 160
N R + + ++ G+M + G + W + V K EGY
Sbjct: 392 NGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGY 451
Query: 161 ---------GLGMRF----YNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW 207
G+ +N L+ A G R A ++ DE T G P L +N L+
Sbjct: 452 VTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLS 511
Query: 208 SVDVHRMWEGGAYTAISVWLNKM 230
+ G +TA +NKM
Sbjct: 512 VLSRQ-----GDWTAAQSIINKM 529
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM GV D+FN +I A+ + G A K Y EM P T A+LSV
Sbjct: 455 VLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLS 514
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ ++K+ G P+ M Y +LL +AK + E++ +
Sbjct: 515 RQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWV 574
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ ++ F + +E F ++ G+ + +N++L G+ +A + D
Sbjct: 575 ILRTLVISNFKCR-RLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDS 633
Query: 190 ATKRGLFPELFRHNKLV 206
+ GL P+L +N ++
Sbjct: 634 IKQGGLSPDLITYNSMM 650
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 2/206 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVE-MEKVRCDPNERT 60
G Y+ + + + GVA +N +++ + + GR I A +E M +P+ T
Sbjct: 201 GRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLEEMRAAGVEPDGFT 260
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ GLVDE+ F+++KS G +P V+ Y LL V+ K+ + +A +L EM
Sbjct: 261 ASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEME 320
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ VT + G + ++ D + +G YN ++ A G
Sbjct: 321 ESGCKP-DAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKV 379
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A + D K G P + +N ++
Sbjct: 380 DEALALFDWMKKNGFIPYVNTYNLIL 405
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 2/151 (1%)
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR-WDDAYGLLD 117
R VL G + + E F E+K G+ P+ + Y ++L VY + R W +L+
Sbjct: 188 RAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLE 247
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM + +I D + V + F+ L G+ + YNALL+
Sbjct: 248 EMRAAGVEPDGFTASTVIAACGRDGLVDEAVAF-FEDLKSRGHVPCVVTYNALLQVFGKA 306
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWS 208
G A RVL E + G P+ +N+L S
Sbjct: 307 GNYMEALRVLKEMEESGCKPDAVTYNELAGS 337
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/126 (19%), Positives = 63/126 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+Y++ + + + G++ + ++N++++ + + EA K ++ + P+ +
Sbjct: 622 GMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSY 681
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V++ +C GL+ E++ E+ + G+ P V+ Y L+ YA + +A ++ M
Sbjct: 682 NTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQ 741
Query: 122 NRISNI 127
+S +
Sbjct: 742 RNLSPM 747
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + IL R+ S + + S+N V+ F + G +EA + EM P T ++
Sbjct: 661 EAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLV 720
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRI 124
Y + E++E + + P + Y ++ Y K+ R+D+A G L E+ T+R
Sbjct: 721 GGYASREMFSEAREVVSYMIQRNLSPMELTYRRVVDSYCKAKRFDEARGFLYEIAETDRN 780
Query: 125 SN---IHQVTGQMIKGEF 139
S+ + +T ++ +F
Sbjct: 781 SDQKLLSTLTARVESAQF 798
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 66/158 (41%), Gaps = 35/158 (22%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG------------------------ 37
G + Q+I+++M G N S++ +++ +GG
Sbjct: 517 GDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVIL 576
Query: 38 -----------RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
R E +A+ E+ P+ ++LS+Y G+ ++ E F IK
Sbjct: 577 RTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQ 636
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
G+ P ++ Y ++ +YAKSN +A +L + T+++
Sbjct: 637 GGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQL 674
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL KE Q ILS M GV +++ ++ + F EA + M + P E T
Sbjct: 692 GLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSPMELTY 751
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSS 87
V+ YC A DE++ EI +
Sbjct: 752 RRVVDSYCKAKRFDEARGFLYEIAET 777
>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
Length = 641
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 5/202 (2%)
Query: 9 AILSRMS-ESGVARNSDSFNAVIEAFRQGGRFEEAIKAY---VEMEKVRCDPNERTLEAV 64
+ RM+ E R SFN+V+ Q G F A++ Y + + V PN T V
Sbjct: 116 GLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLV 175
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ C GLVD++ + F+++ S P V YC L+ K++R D+A LLDEM +
Sbjct: 176 IKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGC 235
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
VT ++ + + V + D + +G YN L+ L G E+A
Sbjct: 236 FP-SPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAI 294
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+LD P + + ++
Sbjct: 295 SLLDRMVSSKCVPNVVTYGTII 316
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 5/233 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++L M G + +FN +I + G K M C PNE T ++
Sbjct: 222 EAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLI 281
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G ++++ + SS +P+V+ Y ++ K R D +L M
Sbjct: 282 HGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYH 341
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V +I G F E Q +F ++ + L Y+A+++ L G + A
Sbjct: 342 VNEYVYSALISGLF-KEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALE 400
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238
VL E T P + ++ L+ G + AI +W + F E
Sbjct: 401 VLSEMTNNRCKPNAYTYSSLMKGF----FEAGNGHKAIEMWKDMAKHNFTQNE 449
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 14/208 (6%)
Query: 2 GLYKECQA-----ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GL+KE ++ + M+ N+ ++AVI+ + G+ +EA++ EM RC P
Sbjct: 353 GLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKP 412
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
N T +++ + AG ++ E ++++ + +CY +L+ K + +A +
Sbjct: 413 NAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVW 472
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVE---YVFDKLNCE--GYGLGMRFYNALL 171
+M G MI G SN +VE +++++ C+ + YN LL
Sbjct: 473 AQMLGKGCKPDVVAYGSMINGL----SNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILL 528
Query: 172 EALWCLGLRERAARVLDEATKRGLFPEL 199
AL RA +L+ RG P+L
Sbjct: 529 NALCKQSSISRAIDLLNSMLDRGCDPDL 556
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 109/254 (42%), Gaps = 17/254 (6%)
Query: 2 GLYKECQA-----ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GL K+ +A +L+ M E G N ++A+I + G+ +EA++ + EM C+
Sbjct: 318 GLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECEL 377
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
N AV+ C G DE+ E E+ ++ P+ Y L+ + ++ A +
Sbjct: 378 NTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMW 437
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+M + + +I G D + V+ ++ +G + Y +++ L
Sbjct: 438 KDMAKHNFTQNEVCYSVLIHGLCKD-GKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSN 496
Query: 177 LGLRERAARVLDE--ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234
GL E A ++ +E + P++ +N L+ ++ ++IS ++ + M
Sbjct: 497 AGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNAL--------CKQSSISRAIDLLNSML 548
Query: 235 MMGEDLPQLATVVV 248
G D P L T ++
Sbjct: 549 DRGCD-PDLVTCII 561
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 81/198 (40%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L RM S N ++ +I + GR + + ME+ NE A++S
Sbjct: 295 SLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGL 354
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G E+ + F+E+ + + Y ++ + + D+A +L EM NR
Sbjct: 355 FKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNA 414
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++KG F+ + + +E ++ + + Y+ L+ L G + A V
Sbjct: 415 YTYSSLMKGFFEAGNGHKAIE-MWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWA 473
Query: 189 EATKRGLFPELFRHNKLV 206
+ +G P++ + ++
Sbjct: 474 QMLGKGCKPDVVAYGSMI 491
>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
Length = 332
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M +SGV + ++N+++ F G+ +EAI +M +P+ T +++ C
Sbjct: 69 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLC 128
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + +GLLD M N I H
Sbjct: 129 KNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 188
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V ++ + + + VF K+ +G Y +++ L G E A ++
Sbjct: 189 VFSILVCA-YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQ 247
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
GL P+ +N L+ S+ + WE
Sbjct: 248 MIDEGLRPDSIVYNSLIHSLCIFDKWE 274
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 1/184 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S++ VI F + G ++ Y EM R PN T ++++ C A VD++ E +
Sbjct: 14 SYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM 73
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
SG++P M Y ++ + S + +A L +M ++ + VT +
Sbjct: 74 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEP-DVVTYNSLMDYLCKNGR 132
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+FD + G + Y LL+ G +LD + G+ P + +
Sbjct: 133 CTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI 192
Query: 205 LVWS 208
LV +
Sbjct: 193 LVCA 196
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV + ++N++++ + GR EA K + M K P+ T
Sbjct: 96 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTY 155
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P+ + +L+ YAK + ++A + +M
Sbjct: 156 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 215
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N + VT + + F+++ EG YN+L+ +L E
Sbjct: 216 QGL-NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWE 274
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
+A + E RG+ N ++ S
Sbjct: 275 KAEELFLEMLDRGICLSTIFFNSIIDS 301
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 1/153 (0%)
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
C P+ + V++ + G +D++ + E+ I P+V+ Y ++A K+ D A
Sbjct: 8 CPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAM 67
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
+L M + + ++ G F + K+ +G + YN+L++
Sbjct: 68 EVLTTMVKSGVMPDCMTYNSIVHG-FCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDY 126
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L G A ++ D TKRGL P++ + L+
Sbjct: 127 LCKNGRCTEARKIFDSMTKRGLKPDITTYGTLL 159
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 85/201 (42%), Gaps = 5/201 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + I M++ G+ + ++ +++ + G E M + PN
Sbjct: 131 GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 190
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y V+E+ F +++ G+ P+ + Y ++ V KS R +DA ++M
Sbjct: 191 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMID 250
Query: 122 NRISNIHQVTGQMIKGE--FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ V +I FD W+ E +F ++ G L F+N+++++ G
Sbjct: 251 EGLRPDSIVYNSLIHSLCIFD---KWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGR 307
Query: 180 RERAARVLDEATKRGLFPELF 200
+ ++ D + G+ P++
Sbjct: 308 VIESVKLFDLMVRIGVKPDII 328
>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
Length = 760
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 69/123 (56%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E +I M E+G A++ ++NA+++++ + G+F EA+ EM++ PN T
Sbjct: 345 GNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTY 404
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ YC G ++ FQ++K +G+ P V+ Y L+ K+ D+A LL+EM
Sbjct: 405 SALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMAD 464
Query: 122 NRI 124
N I
Sbjct: 465 NGI 467
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 12/212 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG Y I M E G++ + +FN +I A + R+EE + + EME+ ++ T
Sbjct: 203 GGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVT 262
Query: 61 LEAVLSVYCFAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ YC G + + + KSSGI PSV+ Y ++ YAK +A L EM
Sbjct: 263 YNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEM 322
Query: 120 HTNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ M+ G FD+ + + + G+ + YNALL++
Sbjct: 323 RNQNVEPDGICYNTMVDIHARLGNFDEAHS------IRRAMEEAGFAKDIVTYNALLDSY 376
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G A +L+E +RG P + ++ L+
Sbjct: 377 GKQGKFREAMSLLEEMKQRGASPNILTYSALI 408
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 108/235 (45%), Gaps = 22/235 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L M+++G+ N ++N++++A+ GR ++ + P L
Sbjct: 450 GSPDEALALLEEMADNGIRPNVITYNSLLDAY---GRQCLMVRKNFPKLRFFLLPRVTML 506
Query: 62 EAVLSVYCFAGLVDESKEQ---------FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
Y LVD ++Q F+E+ +G+ P+V+ + +L + +DA
Sbjct: 507 LKPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDA 566
Query: 113 YGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
LL+ M ++ VT ++ G F W+ E +F++L G+ + FYNAL +
Sbjct: 567 SSLLEAMRVFD-GRVYGVTHGLLMG-FRIRV-WRDAETLFNELTTLGHNTAVAFYNALTD 623
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227
LW E+A A R ++ + + H++ + +D+H M G A + +WL
Sbjct: 624 VLWHF---EQA----KAAKDRHVWDKAWWHSEQQFFLDLHFMSVGSAQAMLHLWL 671
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 98/239 (41%), Gaps = 37/239 (15%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLE 62
++EC I + M E G+AR+ ++N +I + +GG+ M K +P+ T
Sbjct: 241 WEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYS 300
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD------------ 110
++ Y GL E+ FQE+++ + P +CY ++ ++A+ +D
Sbjct: 301 TMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEA 360
Query: 111 -------------DAYG----------LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
D+YG LL+EM R ++ + +T + + +
Sbjct: 361 GFAKDIVTYNALLDSYGKQGKFREAMSLLEEM-KQRGASPNILTYSALIDAYCKHGFHRD 419
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+F + G + Y+ L++ G + A +L+E G+ P + +N L+
Sbjct: 420 AMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLL 478
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 88/206 (42%), Gaps = 6/206 (2%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q I R +G N ++++I A+ + G+ +A++ + M KV C PN AV+
Sbjct: 141 QLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAM-KVVCKPNLVVYNAVIDA 199
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
G + F+E+ G+ P + + L++ ++NRW++ + EM I+
Sbjct: 200 CSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIAR- 258
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKL-NCEGYGLGMRFYNALLEALWCLGLRERAARV 186
VT + + + + + + G + Y+ +++ LGL A +
Sbjct: 259 DDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIAL 318
Query: 187 LDEATKRGLFPELFRHNKLVWSVDVH 212
E + + P+ +N + VD+H
Sbjct: 319 FQEMRNQNVEPDGICYNTM---VDIH 341
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 3/182 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E A+ M V + +N +++ + G F+EA ME+ + T
Sbjct: 310 GLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTY 369
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+L Y G E+ +E+K G P+++ Y L+ Y K DA L ++
Sbjct: 370 NALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKK 429
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL--WCLGL 179
+ + ++ G + S + + + +++ G + YN+LL+A CL +
Sbjct: 430 AGLQPDVVLYSTLVDGCCKNGSPDEALA-LLEEMADNGIRPNVITYNSLLDAYGRQCLMV 488
Query: 180 RE 181
R+
Sbjct: 489 RK 490
>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
Length = 759
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 69/123 (56%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E +I M E+G A++ ++NA+++++ + G+F EA+ EM++ PN T
Sbjct: 344 GNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTY 403
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ YC G ++ FQ++K +G+ P V+ Y L+ K+ D+A LL+EM
Sbjct: 404 SALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMAD 463
Query: 122 NRI 124
N I
Sbjct: 464 NGI 466
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 12/212 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG Y I M E G++ + +FN +I A + R+EE + + EME+ ++ T
Sbjct: 202 GGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVT 261
Query: 61 LEAVLSVYCFAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ YC G + + + KSSGI PSV+ Y ++ YAK +A L EM
Sbjct: 262 YNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEM 321
Query: 120 HTNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ M+ G FD+ + + + G+ + YNALL++
Sbjct: 322 RNQNVEPDGICYNTMVDIHARLGNFDEAHS------IRRAMEEAGFAKDIVTYNALLDSY 375
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G A +L+E +RG P + ++ L+
Sbjct: 376 GKQGKFREAMSLLEEMKQRGASPNILTYSALI 407
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 22/235 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L M+++G+ N ++N++++A+ GR ++ + P L
Sbjct: 449 GSPDEALALLEEMADNGIRPNVITYNSLLDAY---GRQCLMVRKTFPKLRFFLLPRVTML 505
Query: 62 EAVLSVYCFAGLVDESKEQ---------FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
LVD ++Q F+E+ +G+ P+V+ + +L + +DA
Sbjct: 506 LKPSMQDDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDA 565
Query: 113 YGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
LL+ M ++ VT ++ G F W+ E +F++L G+ + FYNAL +
Sbjct: 566 SNLLEAMRVFD-GRVYGVTHGLLMG-FRIRV-WRDAETLFNELTTLGHNTAVAFYNALTD 622
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227
LW E+A A R ++ + + H++ + +D+H M G A + +WL
Sbjct: 623 VLWHF---EQA----QAAKDRHVWDKAWWHSEQQFFLDLHFMSVGSAQAMLHLWL 670
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 98/239 (41%), Gaps = 37/239 (15%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLE 62
++EC I + M E G+AR+ ++N +I + +GG+ M K +P+ T
Sbjct: 240 WEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYS 299
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD------------ 110
++ Y GL E+ FQE+++ + P +CY ++ ++A+ +D
Sbjct: 300 TMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEA 359
Query: 111 -------------DAYG----------LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
D+YG LL+EM R ++ + +T + + +
Sbjct: 360 GFAKDIVTYNALLDSYGKQGKFREAMSLLEEM-KQRGASPNILTYSALIDAYCKHGFHRD 418
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+F + G + Y+ L++ G + A +L+E G+ P + +N L+
Sbjct: 419 AMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLL 477
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 88/206 (42%), Gaps = 6/206 (2%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q I R +G N ++++I A+ + G+ +A++ + M KV C PN AV+
Sbjct: 140 QLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAM-KVVCKPNLVVYNAVIDA 198
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
G + F+E+ G+ P + + L++ ++NRW++ + EM I+
Sbjct: 199 CSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIAR- 257
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKL-NCEGYGLGMRFYNALLEALWCLGLRERAARV 186
VT + + + + + + G + Y+ +++ LGL A +
Sbjct: 258 DDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIAL 317
Query: 187 LDEATKRGLFPELFRHNKLVWSVDVH 212
E + + P+ +N + VD+H
Sbjct: 318 FQEMRNQNVEPDGICYNTM---VDIH 340
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 3/182 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E A+ M V + +N +++ + G F+EA ME+ + T
Sbjct: 309 GLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTY 368
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+L Y G E+ +E+K G P+++ Y L+ Y K DA L ++
Sbjct: 369 NALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKK 428
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL--WCLGL 179
+ + ++ G + S + + + +++ G + YN+LL+A CL +
Sbjct: 429 AGLQPDVVLYSTLVDGCCKNGSPDEALA-LLEEMADNGIRPNVITYNSLLDAYGRQCLMV 487
Query: 180 RE 181
R+
Sbjct: 488 RK 489
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 99/215 (46%), Gaps = 8/215 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ ++M + + +FN ++ AF + G+ +E + M K PN T +++ YC
Sbjct: 282 LFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC 341
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
V+++K F + G+ P + Y +++ + K ++D+A L EMH I
Sbjct: 342 LVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVV 401
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G + D+++ G +R YN++L+AL + ++A +L +
Sbjct: 402 TYSSLIDG-LSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTK 460
Query: 190 ATKRGLFPELFRHNKLVWSV-------DVHRMWEG 217
+G+ P ++ ++ L+ + D +++EG
Sbjct: 461 LKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEG 495
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 1/175 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+ +I + G A+ ++ PN ++ C LV+E+ + F E+
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S GI P V+ Y L++ + + +DA L ++M I T ++ F +
Sbjct: 252 ISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKP-DVYTFNILVNAFCKDGK 310
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
+ + VFD + +G YN+L++ + +A + + + G+ P++
Sbjct: 311 MKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDI 365
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/198 (17%), Positives = 84/198 (42%), Gaps = 3/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L R+ + V N +N +I++ + EA + EM P+ T A++S +C
Sbjct: 212 LLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFC 271
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++++ + F ++ I P V + +L+ + K + + + D M I
Sbjct: 272 ILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFV 331
Query: 130 VTGQMIKGE-FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G E N + +F+ + G ++ Y+ ++ + + A +
Sbjct: 332 TYNSLMDGYCLVKEVN--KAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFK 389
Query: 189 EATKRGLFPELFRHNKLV 206
E ++ + P++ ++ L+
Sbjct: 390 EMHRKNIIPDVVTYSSLI 407
>gi|357138611|ref|XP_003570884.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Brachypodium distachyon]
Length = 864
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 10/235 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM----EKVRCDPN 57
G E + ++ RM G+A N +FN I A + GR EA + + +M E+ P+
Sbjct: 219 GRVDEAERLVDRMRAQGLAPNVVTFNGRISALCKAGRVLEAYRIFNDMQEAWEQGLPRPD 278
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
+ T + +LS +C AG+VDE+ ++ G L V Y L+ K+ R +A LL
Sbjct: 279 QVTFDVMLSGFCDAGMVDEATVLVDIMRCGGFLRKVESYNRWLSGLVKNGRVGEAQELLS 338
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM + + T +I E V V D + + Y +LL A
Sbjct: 339 EMAHEGVQP-NSYTYNIIVDGLCKEGKAFDVRRVEDFVRSGVMTPDVVTYTSLLHAYCSK 397
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
G A R+LDE ++G P LF +N L+ S + + G T + L +M E
Sbjct: 398 GNTTAANRILDEMAQKGCAPNLFTYNVLLQS-----LLKAGRTTEVERLLERMSE 447
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 1/152 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + L M ++ +S ++ I + G+ AIK +MEK C+P+ R+
Sbjct: 526 GRFDEAKKKLVEMIGKDISPDSVIYDTFIHGYCMHGKTSLAIKVLRDMEKRSCNPSTRSY 585
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + DE + E+K GI +VM Y L+ + + A LLDEM
Sbjct: 586 NLLIWGFQEKQKSDEILKLMSEMKEKGISSNVMTYNSLIKSFCGRGMVNKAMPLLDEMLQ 645
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFD 153
N I G +IK F +++ + VFD
Sbjct: 646 NEIVPNVTSFGLLIKA-FCKTADFSAAQRVFD 676
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 13/200 (6%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAI---KAYVEMEKVRCDPNERTLEAVLSVYC 69
R+ ++ ARN S + + + GR +A+ A EM V C+ V++ +C
Sbjct: 164 RVFDAMPARNEFSSGILARGYCRAGRSADALAVLDAMPEMNLVVCN-------TVVAGFC 216
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH---TNRISN 126
G VDE++ +++ G+ P+V+ + ++ K+ R +AY + ++M +
Sbjct: 217 REGRVDEAERLVDRMRAQGLAPNVVTFNGRISALCKAGRVLEAYRIFNDMQEAWEQGLPR 276
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
QVT ++ F D + D + C G+ + YN L L G A +
Sbjct: 277 PDQVTFDVMLSGFCDAGMVDEATVLVDIMRCGGFLRKVESYNRWLSGLVKNGRVGEAQEL 336
Query: 187 LDEATKRGLFPELFRHNKLV 206
L E G+ P + +N +V
Sbjct: 337 LSEMAHEGVQPNSYTYNIIV 356
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 24/229 (10%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAI----------------- 43
G E + +L RMSE G + ++ S N +I+ + + E A+
Sbjct: 432 AGRTTEVERLLERMSEKGYSLDTASCNIIIDGLCRNSKLEMAMDIVDGMWNEGRLALRRL 491
Query: 44 -KAYVEMEK-----VRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC 97
++V + C P+ T +++ C G DE+K++ E+ I P + Y
Sbjct: 492 GNSFVSLVSDSSISKSCLPDRITYSTLMNALCKEGRFDEAKKKLVEMIGKDISPDSVIYD 551
Query: 98 MLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC 157
+ Y + A +L +M R N + ++ F ++ + + ++
Sbjct: 552 TFIHGYCMHGKTSLAIKVLRDME-KRSCNPSTRSYNLLIWGFQEKQKSDEILKLMSEMKE 610
Query: 158 EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G + YN+L+++ G+ +A +LDE + + P + L+
Sbjct: 611 KGISSNVMTYNSLIKSFCGRGMVNKAMPLLDEMLQNEIVPNVTSFGLLI 659
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 68/174 (39%), Gaps = 1/174 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ E ++ M G R +S+N + + GR EA + EM PN T
Sbjct: 292 AGMVDEATVLVDIMRCGGFLRKVESYNRWLSGLVKNGRVGEAQELLSEMAHEGVQPNSYT 351
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G + + ++S + P V+ Y LL Y A +LDEM
Sbjct: 352 YNIIVDGLCKEGKAFDVRRVEDFVRSGVMTPDVVTYTSLLHAYCSKGNTTAANRILDEMA 411
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ + T ++ VE + ++++ +GY L N +++ L
Sbjct: 412 QKGCAP-NLFTYNVLLQSLLKAGRTTEVERLLERMSEKGYSLDTASCNIIIDGL 464
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 2/169 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++S M E G++ N ++N++I++F G +A+ EM + PN + ++
Sbjct: 600 EILKLMSEMKEKGISSNVMTYNSLIKSFCGRGMVNKAMPLLDEMLQNEIVPNVTSFGLLI 659
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+C ++ F S+ V+ YC++ + RW +A +L+ RIS
Sbjct: 660 KAFCKTADFSAAQRVFDVALSTCGQKEVL-YCLMCTELSTYARWIEAKNILETALEMRIS 718
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
I + I D S + +GY + +++AL
Sbjct: 719 -IQSFPYKRIIAGLCDVSEADHAHSLLKLFIAKGYSFDPATFMPVIDAL 766
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 9/197 (4%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
++ G + ++N ++ A G+++E K E+ C+PN T ++S C G
Sbjct: 176 LNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGK 235
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RISNIHQ 129
++ES + +K G+ P CY L+A + + + D A LD M + I N +
Sbjct: 236 IEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNT 295
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ + K D + VE +F KL+ G + YN +L ALW G R RA ++ +
Sbjct: 296 IMAALCKNGNGDHA----VE-IFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQ 350
Query: 190 ATKRGLFPELFRHNKLV 206
+G+ P++ +N L+
Sbjct: 351 MLSKGIDPDVITYNSLI 367
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 2/186 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE- 83
++NAVI F + R E A M++ P+ T ++ +C G +D + + F+E
Sbjct: 46 AYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEEL 105
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143
+K + P+++ Y +L+ Y D+A LLDEM + + + +G +
Sbjct: 106 LKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGK 165
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+ E+V LN G + YN LL AL G + + + E RG P + ++
Sbjct: 166 VDRAFEFV-RTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYS 224
Query: 204 KLVWSV 209
L+ S+
Sbjct: 225 ILISSL 230
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I ++ E G N S+N ++ A G A+ +M DP+ T +++S C
Sbjct: 312 IFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLC 371
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
G+VDE+ ++ S P+++ Y +L K++R DDA +L M N
Sbjct: 372 RDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIEN 424
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 1/185 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +IEA+ G +EA+K EM +P+ T + C G VD + E + +
Sbjct: 117 TYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTL 176
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S G P V+ Y +LL +WD+ + E+ + R + VT ++ +
Sbjct: 177 NSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFS-RGCEPNVVTYSILISSLCRDGK 235
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + +G Y+ L+ A G + A LD G P++ +N
Sbjct: 236 IEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNT 295
Query: 205 LVWSV 209
++ ++
Sbjct: 296 IMAAL 300
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 91 PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150
P V Y +++ + K+NR + A +LD M S VT ++ G F + +
Sbjct: 42 PDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSP-DVVTHNIMIGTFCGKGKIDLALK 100
Query: 151 VFDKL----NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
VF++L NC+ + Y L+EA G + A ++LDE RGL P+ F +N
Sbjct: 101 VFEELLKDNNCKPT---LITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYN 154
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N ++ A + G + A++ + ++++V C PN + +LS +G + ++
Sbjct: 292 NYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQM 351
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
S GI P V+ Y L++ + D+A GLL +M + R
Sbjct: 352 LSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGR 390
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++S+M G+ + ++N++I + G +EAI +M R PN + + VL
Sbjct: 346 GMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGL 405
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
C A +D++ E + +G P+ Y +L+
Sbjct: 406 CKAHRIDDAIEVLAAMIENGCQPNETTYTLLI 437
>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
Length = 757
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 7/212 (3%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M + GV N+ ++ +I + G+++E ++ EM P+ +L
Sbjct: 222 KGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDY 281
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G E++ F + GI P+V Y +LL YA + + LD M N +S
Sbjct: 282 LCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPD 341
Query: 128 HQVTGQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
H + M F + M++ ++FDK+ + + Y AL++AL LG + A
Sbjct: 342 HHIFNIM----FCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAV 397
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
++ G+ P++F + LV+ + WE
Sbjct: 398 LKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWE 429
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 9/202 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E Q ++ M GV + S+N +++ GR +EA K + + P++ T
Sbjct: 461 GRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTY 520
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L YC A +D++ F+E+ G+ P V+ Y +L ++ R+ +A L M
Sbjct: 521 NTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMIN 580
Query: 122 NRIS-NIHQ---VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+R NI+ + + K F DE+ ++M F L + L + N ++ AL
Sbjct: 581 SRTQMNIYTYNIIINGLCKNNFVDEA-FKM----FHSLCSKDLQLDIFTANIMIGALLKG 635
Query: 178 GLRERAARVLDEATKRGLFPEL 199
G +E A + + GL P++
Sbjct: 636 GRKEDAMDLFATISAYGLVPDV 657
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + L M +GV+ + FN + A+ + +EA+ + +M + R PN T
Sbjct: 321 GSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTY 380
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C G VD++ +F ++ G+ P + + L+ ++W+ A L E+
Sbjct: 381 GALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLD 440
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I + V + E + + D + G + YN L++ G +
Sbjct: 441 QGI-RLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRID 499
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
AA++LD GL P+ +N L+
Sbjct: 500 EAAKLLDVIVSIGLKPDKVTYNTLL 524
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 82/194 (42%), Gaps = 1/194 (0%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
+ G+ ++ FN ++ + GR EA + M +V P+ + ++ +C G +D
Sbjct: 440 DQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRID 499
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
E+ + I S G+ P + Y LL Y K+ R DDAY L EM ++ ++
Sbjct: 500 EAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTIL 559
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
G F + E +N + + YN ++ L + A ++ + L
Sbjct: 560 HGLFQTGRFSEAKELYLSMINSRTQ-MNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDL 618
Query: 196 FPELFRHNKLVWSV 209
++F N ++ ++
Sbjct: 619 QLDIFTANIMIGAL 632
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV---RCDPNERTLEAVLS 66
+L RM E G + S++ +++ F R EEA++ M PN T V+
Sbjct: 151 LLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVID 210
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
C A +VD +K FQ + G+ P+ Y L+ Y +W + +L EM T+
Sbjct: 211 GLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTH 266
>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 680
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 108/230 (46%), Gaps = 6/230 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +A+ + E+G+ + ++NA+++ + + G ++A EMEK P+E+T
Sbjct: 289 SGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQT 348
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ VY AG + ++ +E+++S + P+ + +LA Y W ++ +L +M
Sbjct: 349 YSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMK 408
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ + MI F + F+++ EG + +N L++ G
Sbjct: 409 SSGVQPDRHFYNVMID-TFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRH 467
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+ A + E +RG P + +N ++ S+ + WE ++ +L+KM
Sbjct: 468 DMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWE-----QVTAFLSKM 512
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L+ +G+ + AVI A GR EA + E+ + +P R A+L Y
Sbjct: 264 LAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVR 323
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G + +++ E++ +G+ P Y +L+ VYA + RW+ A +L EM + + V
Sbjct: 324 TGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYV 383
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+++ + D+ WQ V + G FYN +++ + A +
Sbjct: 384 FSRIL-ANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERM 442
Query: 191 TKRGLFPELFRHNKLV 206
G+ P++ N L+
Sbjct: 443 LSEGIPPDIVTWNTLI 458
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ +L M SGV + +N +I+ F + + A+ + M P+ T
Sbjct: 395 GEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTW 454
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C +G D ++E F E++ G P + Y +++ + RW+ L +M +
Sbjct: 455 NTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQS 514
Query: 122 -----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N I+ V G F D +E + L G+ YNAL+ A
Sbjct: 515 QGLQPNSITYTTLVDVYGKSGRFSDA-----IE-CLEVLKSTGFKPTSTMYNALINAYAQ 568
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
GL E A T GL P L N L+
Sbjct: 569 RGLSELAVNAFRLMTTEGLTPSLLALNSLI 598
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ A LS+M G+ NS ++ +++ + + GRF +AI+ ++ P A
Sbjct: 502 WEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNA 561
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ Y GL + + F+ + + G+ PS++ L+ + + R +A+ +L M N
Sbjct: 562 LINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENN 621
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159
I ++K E +Q V V++++ G
Sbjct: 622 IEPDVVTYTTLMKALIRVE-KFQKVPAVYEEMVASG 656
>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
Length = 526
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M +SGV + ++N+++ F G+ +EAI +M +P+ T +++ C
Sbjct: 138 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLC 197
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + +GLLD M N I H
Sbjct: 198 KNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 257
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V ++ + + + VF K+ +G Y +++ L G E A ++
Sbjct: 258 VFSILVCA-YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQ 316
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
GL P+ +N L+ S+ + WE
Sbjct: 317 MIDEGLRPDSIVYNSLIHSLCIFDKWE 343
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 99/242 (40%), Gaps = 8/242 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV + ++N++++ + GR EA K + M K P+ T
Sbjct: 165 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTY 224
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P+ + +L+ YAK + ++A + +M
Sbjct: 225 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 284
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N + VT + + F+++ EG YN+L+ +L E
Sbjct: 285 QGL-NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWE 343
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVH----RMWEGGAYTAISVWLNKMYEMFMMG 237
+A + E RG+ N + +D H R+ E G + V + ++ +G
Sbjct: 344 KAEELFLEMLDRGICLSTIFFNSI---IDSHCKEGRVIESGKLFDLMVRIGVKPDIITLG 400
Query: 238 ED 239
+
Sbjct: 401 RN 402
>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 401
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M +SGV + ++N+++ F G+ +EAI +M +P+ T +++ C
Sbjct: 138 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLC 197
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + +GLLD M N I H
Sbjct: 198 KNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 257
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V ++ + + + VF K+ +G Y +++ L G E A ++
Sbjct: 258 VFSILVCA-YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQ 316
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
GL P+ +N L+ S+ + WE
Sbjct: 317 MIDEGLRPDSIVYNSLIHSLCIFDKWE 343
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 8/240 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV + ++N++++ + GR EA K + M K P+ T
Sbjct: 165 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTY 224
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P+ + +L+ YAK + ++A + +M
Sbjct: 225 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 284
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N + VT + + F+++ EG YN+L+ +L E
Sbjct: 285 QGL-NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWE 343
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVH----RMWEGGAYTAISVWLNKMYEMFMMG 237
+A + E RG+ N + +D H R+ E G + V + ++ +G
Sbjct: 344 KAEELFLEMLDRGICLSTIFFNSI---IDSHCKEGRVIESGKLFDLMVRIGVKPDIITLG 400
>gi|356567150|ref|XP_003551784.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Glycine max]
Length = 875
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 97/199 (48%), Gaps = 1/199 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
AI M + N +++ ++ + + RFE+A+ Y EM+ + + + ++ +
Sbjct: 351 HAIDVEMPAKNILPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGL 410
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
Y G +E+ +F+E++ GI V+ Y L+ Y + N++ + L DEM RI
Sbjct: 411 YANLGWFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVRKLFDEMKARRIYPN 470
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+IK + + V+ +L EG + FY+AL++AL GL E + R+L
Sbjct: 471 DLTYSTLIK-IYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCKNGLIESSLRLL 529
Query: 188 DEATKRGLFPELFRHNKLV 206
D T++G P + +N ++
Sbjct: 530 DVMTEKGSRPNVVTYNSII 548
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 115/281 (40%), Gaps = 44/281 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRF---EEAIKAYVEMEKVRCDPNE 58
GL + +L M+E G N ++N++I+AFR G + E A+ + + + P+
Sbjct: 520 GLIESSLRLLDVMTEKGSRPNVVTYNSIIDAFRIGQQLPALECAVDTSFQANEHQIKPSS 579
Query: 59 RTLEA----------------VLSVYCF--AGLVDESKEQ----------FQEIKSSGIL 90
L A +L AGL+ + K FQ+++ I
Sbjct: 580 SRLSAGNFQDQKTGNNDEIMKMLEQLAAEKAGLMKKDKRSRQDSFYLVQIFQKMQEMEIK 639
Query: 91 PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150
P+V+ + +L + + DA LLD + S+++ V ++ G + W +
Sbjct: 640 PNVVTFSAILNACSCCETFQDASKLLDALCMFD-SHVYGVAHGLLMGH--GQGLWNQAQT 696
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS-- 208
+FD+L FYNAL + LW G + A V+ E R ++ K WS
Sbjct: 697 LFDELEHLDSSTASAFYNALTDMLWHFGQKLGAQTVVIEGRNRNVW-------KGGWSTE 749
Query: 209 -VDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
+D+H G A + WL ++ G+ P + +++
Sbjct: 750 CLDLHLTSCGAACAMVHTWLLELRTTVFGGQKPPPILSILT 790
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E M G+ + ++NA+IE + + ++ E K + EM+ R PN+ T
Sbjct: 415 GWFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVRKLFDEMKARRIYPNDLTY 474
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +Y + E+ + ++E+K G+ V+ Y L+ K+ + + LLD M T
Sbjct: 475 STLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCKNGLIESSLRLLDVM-T 533
Query: 122 NRISNIHQVTGQMIKGEF 139
+ S + VT I F
Sbjct: 534 EKGSRPNVVTYNSIIDAF 551
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Query: 2 GLYKECQAILSRMSES---GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE 58
G K+ + L+ ES G SF+A+I A + F EA+ M +PN
Sbjct: 200 GRLKKIELALNLFEESRNRGYGNTVYSFSAMISALGRNDCFSEAVSLLRSMGNFGLEPNL 259
Query: 59 RTLEAVLSVYCFAGLVDESKEQF-QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
T A++ L E +F +E+ ++G LP + Y LL RW LL
Sbjct: 260 VTYNAIIDAGAKGELPFEIVVKFLEEMIAAGCLPDRLTYNSLLKTCVAKGRWQLCRDLLA 319
Query: 118 EM 119
EM
Sbjct: 320 EM 321
>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 806
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 109/229 (47%), Gaps = 11/229 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
L+K A+ + M G+ N ++N +++A Q G+ + A K VEM CDP++ +
Sbjct: 158 NLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSY 217
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+S C G VD+++E + + P V Y L+ K R+ +A+ L++EM
Sbjct: 218 TTVISSMCKLGDVDKARELAMKFE-----PVVPVYNALIHGVCKECRFKEAFDLMNEM-V 271
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+R + + ++ + D N ++ VF ++ G ++ + +L++ + G
Sbjct: 272 DRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVG 331
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
A + + + G+ P + +N L+ + +G AISVW N+M
Sbjct: 332 DAVGLWNLMIREGVSPNVVAYNTLIHGL----CSDGNMDEAISVW-NQM 375
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 3/204 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M GV+ N ++N +I G +EAI + +MEK PN T ++ + +G
Sbjct: 340 MIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGD 399
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ + E + ++ + G P+V+ Y ++ V + + +D A+ L+D M ++
Sbjct: 400 LVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNN 459
Query: 134 MIKGEFD-DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
IKG W M V D++ +R YN LL+ L+ A ++ E +
Sbjct: 460 FIKGLCRAGRVEWAM--NVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEE 517
Query: 193 RGLFPELFRHNKLVWSVDVHRMWE 216
R + + +N +++ + M +
Sbjct: 518 RKVEFDCVTYNTIMYGFSFNGMHQ 541
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 92/238 (38%), Gaps = 14/238 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G L C+ ++M G N + +++ Q F++A M C P T
Sbjct: 398 GDLVSACET-WNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVIT 456
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ C AG V+ + +++ LP++ Y LL ++N + +A GL+ E+
Sbjct: 457 FNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELE 516
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ VT I F Q V + K+ G L N + A LG
Sbjct: 517 ERKVE-FDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKV 575
Query: 181 ERAARVLDEATKRGLF-PELFRHNKLVWS-----------VDVHRMWEGGAYTAISVW 226
+ A +VLD + F ++ H ++W V +H M + G + I+ W
Sbjct: 576 KTAIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIATW 633
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 24/206 (11%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M V + + F VI+ +R+ E+ +K + + + C+P+ + VL
Sbjct: 96 LLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALL 155
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
L + +KS G+ P+V Y +LL ++ + D A LL EM
Sbjct: 156 SQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSN-------- 207
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLN--CEGYGLGMRF------YNALLEALWCLGLR- 180
KG D+ ++ V KL + L M+F YNAL+ + C R
Sbjct: 208 ------KGCDPDDVSYTTVISSMCKLGDVDKARELAMKFEPVVPVYNALIHGV-CKECRF 260
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A +++E RG+ P + ++ ++
Sbjct: 261 KEAFDLMNEMVDRGVDPNVISYSTVI 286
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 82/203 (40%), Gaps = 1/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+KE +++ M + GV N S++ VI G E ++ + M C PN +T +
Sbjct: 260 FKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTS 319
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ + G V ++ + + G+ P+V+ Y L+ D+A + ++M +
Sbjct: 320 LIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDS 379
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I +I G E +NC G + Y +++ L + + ++A
Sbjct: 380 IRPNVTTYSTIIYGFAKSGDLVSACETWNKMINC-GCRPNVVVYTCMVDVLCQMSMFDQA 438
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
++D G P + N +
Sbjct: 439 FDLIDNMISDGCPPTVITFNNFI 461
>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 627
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M +SGV + ++N+++ F G+ +EAI +M +P+ T +++ C
Sbjct: 138 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLC 197
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + +GLLD M N I H
Sbjct: 198 KNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 257
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V ++ + + + VF K+ +G Y +++ L G E A ++
Sbjct: 258 VFSILVCA-YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQ 316
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
GL P+ +N L+ S+ + WE
Sbjct: 317 MIDEGLRPDSIVYNSLIHSLCIFDKWE 343
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 8/240 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV + ++N++++ + GR EA K + M K P+ T
Sbjct: 165 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTY 224
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P+ + +L+ YAK + ++A + +M
Sbjct: 225 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 284
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N + VT + + F+++ EG YN+L+ +L E
Sbjct: 285 QGL-NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWE 343
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVH----RMWEGGAYTAISVWLNKMYEMFMMG 237
+A + E RG+ N + +D H R+ E G + V + ++ +G
Sbjct: 344 KAEELFLEMLDRGICLSTIFFNSI---IDSHCKEGRVIESGKLFDLMVRIGVKPDIITLG 400
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 88/209 (42%), Gaps = 5/209 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + I M++ G+ + ++ +++ + G E M + PN
Sbjct: 200 GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 259
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y V+E+ F +++ G+ P+ + Y ++ V KS R +DA ++M
Sbjct: 260 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMID 319
Query: 122 NRISNIHQVTGQMIKGE--FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ V +I FD W+ E +F ++ G L F+N+++++ G
Sbjct: 320 EGLRPDSIVYNSLIHSLCIFD---KWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGR 376
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWS 208
+ ++ D + G+ P++ + + S
Sbjct: 377 VIESGKLFDLMVRIGVKPDIITLGRFLGS 405
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 36/206 (17%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY E + + MS+ G N +N +I F + G + A + M K P+ +T
Sbjct: 907 GRLY-EAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKT 965
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G VDE F+E+K SG+ P V+CY +++ K +R ++A L +EM
Sbjct: 966 YSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMK 1025
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+R G + YN+L+ L G+
Sbjct: 1026 KSR-----------------------------------GITPDLYTYNSLILNLGIAGMV 1050
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E A ++ +E + GL P +F N L+
Sbjct: 1051 EEAGKIYNEIQRAGLEPNVFTFNALI 1076
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 3/212 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + ++ +G + ++N +++A+ + G+ +E + Y EM C+PN T V+S
Sbjct: 807 QDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISG 866
Query: 68 YCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
AG VD++ + + ++ S P+ Y L+ +KS R +A L + M
Sbjct: 867 LVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRP 926
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ +I G F +F ++ EG ++ Y+ L++ L +G +
Sbjct: 927 NCAIYNILING-FGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHY 985
Query: 187 LDEATKRGLFPELFRHNKLVWSV-DVHRMWEG 217
E + GL P++ +N ++ + HR+ E
Sbjct: 986 FRELKESGLNPDVVCYNLIINGLGKFHRLEEA 1017
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 2/210 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + RM G + ++++++ + E + EME + PN T +
Sbjct: 208 EAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICI 267
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
V AG ++E+ E + + G P V+ Y +L+ + + D A + +M T R
Sbjct: 268 RVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGR-H 326
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+VT + F D + V + ++ +G+ + + L++AL G A
Sbjct: 327 KPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFA 386
Query: 186 VLDEATKRGLFPELFRHNKLVWS-VDVHRM 214
LD +G+ P L +N L+ + VHR+
Sbjct: 387 KLDVMRDQGILPNLHTYNTLICGLLRVHRL 416
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 9/200 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M GV + ++ I+ + + G A++ + +M+ PN A L
Sbjct: 422 IFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 481
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RIS 125
AG E+K+ F +K G++P + Y M++ Y+K D+A LL EM N +
Sbjct: 482 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVI 541
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
++ + + K + DE+ W+M F ++ + YN LL L G + A
Sbjct: 542 VVNSLINTLYKADRVDEA-WKM----FMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIE 596
Query: 186 VLDEATKRGLFPELFRHNKL 205
+ + ++G P N L
Sbjct: 597 LFEGMVQKGCPPNTITFNTL 616
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 63/119 (52%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E + I + + G+ +S ++N +++ + + G +EAIK EM + C+P+
Sbjct: 483 AGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIV 542
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ ++++ A VDE+ + F +K + P+V+ Y LLA K+ + +A L + M
Sbjct: 543 VNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGM 601
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 82/190 (43%), Gaps = 2/190 (1%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV ++N +I + E A +++++ C P+ T +L Y +G +DE
Sbjct: 782 GVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDEL 841
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR-ISNIHQVTGQMIK 136
E ++E+ + P+ + + ++++ K+ DDA L ++ ++R S G +I
Sbjct: 842 FEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLID 901
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
G + +F+ ++ G YN L+ G + A + K G+
Sbjct: 902 G-LSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVR 960
Query: 197 PELFRHNKLV 206
P+L ++ LV
Sbjct: 961 PDLKTYSVLV 970
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 3/195 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L M G+ N +F I + G+ EA + M+ C P+ T ++
Sbjct: 246 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 305
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN-RISNI 127
C A +D +KE F ++K+ P + Y LL ++ + D EM + + ++
Sbjct: 306 CTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDV 365
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
VT ++ N+ D + +G + YN L+ L + + A +
Sbjct: 366 --VTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIF 423
Query: 188 DEATKRGLFPELFRH 202
D G+ P + +
Sbjct: 424 DNMESLGVKPTAYTY 438
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M + G N+ +FN + + + A+K +M + C P+ T
Sbjct: 589 GKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTY 648
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
++ G V E+ F ++K + P + C LL K+ +DAY ++
Sbjct: 649 NTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKAGLIEDAYKII 702
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 45/107 (42%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM E + ++N ++ + G+ +EAI+ + M + C PN T + C
Sbjct: 565 RMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKND 624
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
V + + ++ G +P V Y ++ K+ + +A +M
Sbjct: 625 EVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM 671
>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 696
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 104/230 (45%), Gaps = 6/230 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +A+ + E+G + ++NA+++ + + G ++A EMEK P+E+T
Sbjct: 305 SGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQT 364
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y AG + ++ +E+++S + P+ Y +LA Y W ++ +L +M
Sbjct: 365 YSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMK 424
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+N + MI F + F+++ EG +N L+ G
Sbjct: 425 SNGVQPDRHFYNVMID-TFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRH 483
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
A + E +RG P + +N ++ S+ + WE +S++L+KM
Sbjct: 484 NMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWE-----QVSLFLSKM 528
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L+ +G+ + AVI A GR EA + E+ + +P R A+L Y
Sbjct: 280 LAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVK 339
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G + +++ E++ +G+ P Y +L+ YA + RW+ A +L EM + + V
Sbjct: 340 TGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYV 399
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+++ + D+ WQ V + G FYN +++ + A +
Sbjct: 400 YSRIL-ASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERM 458
Query: 191 TKRGLFPELFRHNKLV 206
G+ P+ N L+
Sbjct: 459 LSEGIRPDTVTWNTLI 474
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 101/274 (36%), Gaps = 69/274 (25%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + ++S M ++GV + +++ +I+A+ GR+E A EME +PN
Sbjct: 341 GSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVY 400
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ Y G +S + +++KS+G+ P Y +++ + K N D A + M +
Sbjct: 401 SRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLS 460
Query: 122 ----------NRISNIHQVTGQ------------------------MIKGEFDDESNWQM 147
N + N H +G+ ++ ++ W+
Sbjct: 461 EGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQ 520
Query: 148 VEYVFDKLNCEG--------------YGLGMRF---------------------YNALLE 172
V K+ +G YG RF YNAL+
Sbjct: 521 VSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALIN 580
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
A GL E A T GL P L N L+
Sbjct: 581 AYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLI 614
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 1/156 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ LS+M G+ NS ++ +++ + + GRF +AI+ ++ P A
Sbjct: 518 WEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNA 577
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ Y GL + + F+ + + G+ PS++ L+ + + R +A+ +L M N
Sbjct: 578 LINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENN 637
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159
I ++K E +Q V V++++ G
Sbjct: 638 IEPDVVTYTTLMKALIRVE-KFQKVPAVYEEMVTSG 672
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 48/105 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + M + G + ++N +I + + R+E+ +M+ PN T
Sbjct: 480 SGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSIT 539
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
++ VY +G ++ E + +KS+G P+ Y L+ YA+
Sbjct: 540 YTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQ 584
>gi|356526577|ref|XP_003531893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Glycine max]
Length = 878
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 97/199 (48%), Gaps = 1/199 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
AI M + N +++ ++ + + RFE+A+ Y EM+ + + + ++ +
Sbjct: 352 HAIDVEMPAKNIWPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGL 411
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
Y G +E+ +F+E++ GI V+ Y L+ Y + N++ + L DEM RI
Sbjct: 412 YANLGWFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVQKLFDEMKARRIYPN 471
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+IK + + V+ +L EG + FY+AL++AL GL E + R+L
Sbjct: 472 DLTYSTLIK-IYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCKNGLIESSLRLL 530
Query: 188 DEATKRGLFPELFRHNKLV 206
D T++G P + +N ++
Sbjct: 531 DVMTEKGSRPNVVTYNSII 549
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 113/283 (39%), Gaps = 46/283 (16%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRF--------------EEAIKAY- 46
GL + +L M+E G N ++N++I+AF+ G + E IK
Sbjct: 521 GLIESSLRLLDVMTEKGSRPNVVTYNSIIDAFKIGQQLPALECAVDTPFQANEHQIKPSS 580
Query: 47 -------VEMEKVRCDPNERTLEAVLSVYC-FAGLVDESKEQ----------FQEIKSSG 88
+ +K N+ ++ + + AGL + K FQ++
Sbjct: 581 SRLIVGNFQDQKTDIGNNDEIMKMLEQLAAEKAGLTKKDKRSRQDNFFIVQIFQKMHEME 640
Query: 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMV 148
I P+V+ + +L + + DA LLD + S ++ V ++ G + W
Sbjct: 641 IKPNVVTFSAILNACSCCETFQDASKLLDALRVFD-SQVYGVAHGLLMGH--RQGIWDQT 697
Query: 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW- 207
+ +FD+L FYNAL + LW G + A V+ E R ++ K W
Sbjct: 698 QTLFDELEHLDSSTASAFYNALTDMLWHFGQKLGAQMVVIEGRNRNVW-------KGGWS 750
Query: 208 --SVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
S+D+H G A + WL ++ G+ LP + +++
Sbjct: 751 TESLDLHLTSCGAACAMVHTWLLELRTTVFGGQKLPPILSILT 793
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E M G+ + ++NA+IE + + ++ E K + EM+ R PN+ T
Sbjct: 416 GWFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVQKLFDEMKARRIYPNDLTY 475
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +Y + E+ + ++E+K G+ V+ Y L+ K+ + + LLD M T
Sbjct: 476 STLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCKNGLIESSLRLLDVM-T 534
Query: 122 NRISNIHQVTGQMIKGEF 139
+ S + VT I F
Sbjct: 535 EKGSRPNVVTYNSIIDAF 552
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 2 GLYKECQAILSRMSES---GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE 58
G K+ + L ES G SF+A+I A + RF EA+ M K +PN
Sbjct: 201 GRLKKIELALDLFEESRTRGYGNTVYSFSAMISALGRNNRFSEAVSLLRSMGKFGLEPNL 260
Query: 59 RTLEAVLSVYCFAGLVDESKEQF-QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
T A++ L E +F +E+ ++G +P + Y LL RW LL
Sbjct: 261 VTYNAIIDAGAKGELTFEIVVKFLEEMIAAGCMPDRLTYNSLLKTCVAKGRWKLCRDLLA 320
Query: 118 EM 119
EM
Sbjct: 321 EM 322
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E I+ M E G+ + ++NA+I F G+ E + EM K P+ T
Sbjct: 478 AGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYT 537
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L C G +D++ + + E K+SG++ ++ Y +++ Y K+NR +D L +E+
Sbjct: 538 YNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELL 597
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ ++ V +IK + N + + + +G Y++L+ + +GL
Sbjct: 598 SKKMELNSIVYNIIIKAHCQN-GNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLV 656
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E A ++DE K G P + + L+
Sbjct: 657 EDAKHLIDEMRKEGFVPNVVCYTALI 682
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++C + MSE G + SF VI A +GG+ E AI+ +++MEK+ PN T
Sbjct: 202 FEKCCEVFRVMSE-GACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNC 260
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ C G +D + E +++ G+ P++ Y L+ K N +D +LDEM
Sbjct: 261 IINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEM 316
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 64/120 (53%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + ++ M + G N + A+I + + G+ + A ++EM PN+ T
Sbjct: 654 GLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTY 713
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC G ++++ ++K SGI+P V+ Y +L + K+N D+A+ + D+M T
Sbjct: 714 TVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMAT 773
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 5/210 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER-T 60
G + E + R+ E G + + NA+I G+ EA + EM + R P +R T
Sbjct: 444 GKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLE-RGLPMDRIT 502
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ +C G V+ +E+ GI P + Y LL + DDA L DE
Sbjct: 503 YNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFK 562
Query: 121 -TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ ISNIH G M++G + + + VE +F++L + L YN +++A G
Sbjct: 563 ASGLISNIHTY-GIMMEG-YCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGN 620
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSV 209
A ++L+ +G+ P ++ L+ V
Sbjct: 621 VAAALQLLENMKSKGILPNCATYSSLIHGV 650
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 11/190 (5%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
NS +N +I+A Q G A++ M+ PN T +++ C GLV+++K
Sbjct: 604 NSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLI 663
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIK 136
E++ G +P+V+CY L+ Y K + D A EM H N+ + + G
Sbjct: 664 DEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKL 723
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
G + +N + K+ G + YN L + A +V D+ GL
Sbjct: 724 GNMEKANNLLI------KMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLP 777
Query: 197 PELFRHNKLV 206
+ + LV
Sbjct: 778 VDEITYTTLV 787
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 85/184 (46%), Gaps = 2/184 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
++ G + + N + + + FE+ + + M + C P+ + V++ C G
Sbjct: 177 LARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGAC-PDVFSFTNVINALCKGGK 235
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ + E F +++ GI P+V+ Y ++ ++ R D+A+ L ++M + + G
Sbjct: 236 MENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGA 295
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G + + V ++ D++ G+ + +N L++ +G E A ++ D +
Sbjct: 296 LING-LIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISK 354
Query: 194 GLFP 197
+ P
Sbjct: 355 NITP 358
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 3/205 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ + IL M +G N FN +I+ + + G E A+K M P TL
Sbjct: 305 FFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLY 364
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C + ++ ++ +EI SSG+ + CY ++ + K R+ A+ M +
Sbjct: 365 SLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWL-CKKFRYHSAFRFTKMMLS 423
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ ++ G D + + E F L +G NAL+ L G
Sbjct: 424 RNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLE-KGSPASKVTSNALIHGLCGAGKLP 482
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A+R++ E +RGL + +N L+
Sbjct: 483 EASRIVKEMLERGLPMDRITYNALI 507
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 59/137 (43%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + +M + G++ N ++N +I Q GR + A + +M PN +T
Sbjct: 233 GGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKT 292
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+++ D+ E+ +G P+V+ + L+ Y K + A + D M
Sbjct: 293 YGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMI 352
Query: 121 TNRISNIHQVTGQMIKG 137
+ I+ +++G
Sbjct: 353 SKNITPTSVTLYSLMQG 369
>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
Length = 426
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 5/192 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + ++ M + N +F AVI+ F + G+F EA+K Y EM + DP+ T
Sbjct: 164 GRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTY 223
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ C G VDE+K+ + + G LP V+ Y L+ + KS R D+ L EM
Sbjct: 224 NSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQ 283
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F + +F +++ +R Y+ LL L C+ R
Sbjct: 284 RGLVGDTITYNTIIQGYF-QAGRPDAAQEIFSRMDSRP---NIRTYSILLYGL-CMNWRV 338
Query: 182 RAARVLDEATKR 193
A VL E ++
Sbjct: 339 EKALVLFENMQK 350
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 92/198 (46%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+++ +M + G + + +++I F QG R +AI +ME++ P+ ++
Sbjct: 66 SVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGS 125
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C GLV+++ E F ++ G+ + Y L+A S RW DA L+ +M I +
Sbjct: 126 CKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVP-N 184
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+T + F E + +++++ + YN+L+ L G + A ++LD
Sbjct: 185 VITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLD 244
Query: 189 EATKRGLFPELFRHNKLV 206
+G P++ +N L+
Sbjct: 245 LMVTKGCLPDVVTYNTLI 262
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/204 (18%), Positives = 86/204 (42%), Gaps = 1/204 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M G+ + S+N VI + RF A+ +M K +P+ T+ ++++ +
Sbjct: 31 SLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGF 90
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C V ++ + +++ G P V+ Y ++ K +DA L D M + +
Sbjct: 91 CQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADA 150
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G W + + + + A+++ G A ++ +
Sbjct: 151 VTYNSLVAG-LCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYE 209
Query: 189 EATKRGLFPELFRHNKLVWSVDVH 212
E T+R + P++F +N L+ + +H
Sbjct: 210 EMTRRCVDPDVFTYNSLINGLCMH 233
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q I SRM N +++ ++ R E+A+ + M+K + + T V+
Sbjct: 310 QEIFSRMDSRP---NIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHG 366
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
C G V+++ + F+ + G+ P V+ Y +++ + + +WD + L +M
Sbjct: 367 MCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQ 419
>gi|356557985|ref|XP_003547290.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 692
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 38/273 (13%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERT 60
G+YKE M +G+ +D +N ++ G + A++ + EM+ C P+ T
Sbjct: 352 GVYKE-------MKGNGMDMTADLYNKLLAMCADVGYTDRAVEIFYEMKSSGTCQPDSWT 404
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+++++Y +G V E + E+ SG P++ L+ Y K+ R DD + ++
Sbjct: 405 FSSLITIYSRSGKVSEVEGMLNEMIQSGFQPTIFVMTSLIRCYGKAKRTDDVVKIFKQLL 464
Query: 120 HTNRISNIH------QVTGQMIKGEF-----------------------DDESNWQMVEY 150
+ N H V Q K E + ES+ +
Sbjct: 465 DLGIVPNDHFCCCLLNVLTQTPKEELGKLTDCIEKANTKLGTVVRYLVEEQESDEGFRKE 524
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVD 210
+ LN + N L++ L + ERA +LD ++ + ++ WS+
Sbjct: 525 TLELLNSIDAEVKKPLCNCLIDLCVKLNVPERACGLLDLGLMLEIYKNIQSKSQTQWSLH 584
Query: 211 VHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQL 243
+ + G A TA+ VW+N + E GEDLP L
Sbjct: 585 LKELSVGAAMTALHVWINDLSEALESGEDLPPL 617
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+F+ +I+ + G +++ ++ Y EM+ + PN T +L + ++K +E+
Sbjct: 263 TFSTLIKMYSMAGNYDKCLEVYQEMKVLGVKPNVATYNTLLGAMLRSKKHRQAKAIHKEM 322
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
KS+G+ P + Y LL VY ++ +DA G+ EM N
Sbjct: 323 KSNGVSPDFITYASLLEVYTRAQCSEDALGVYKEMKGN 360
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 3/182 (1%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N ++ R+ FE A K + EM + P+ T +++ +GL +++ E F+++
Sbjct: 159 YNVTLKVLRESRDFEGAEKLFDEMLQRGVKPDNITFSTLVNCASVSGLPNKAVELFEKMS 218
Query: 86 SSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G P + C M+ A YA++N D A L D S + VT + + N
Sbjct: 219 GFGCEPDGITCSGMVYA-YARTNNVDKAVNLYDRAKAENWS-LDAVTFSTLIKMYSMAGN 276
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ V+ ++ G + YN LL A+ +A + E G+ P+ +
Sbjct: 277 YDKCLEVYQEMKVLGVKPNVATYNTLLGAMLRSKKHRQAKAIHKEMKSNGVSPDFITYAS 336
Query: 205 LV 206
L+
Sbjct: 337 LL 338
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 1/194 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL + + +MS G + + + ++ A+ + ++A+ Y + + T
Sbjct: 204 SGLPNKAVELFEKMSGFGCEPDGITCSGMVYAYARTNNVDKAVNLYDRAKAENWSLDAVT 263
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ +Y AG D+ E +QE+K G+ P+V Y LL +S + A + EM
Sbjct: 264 FSTLIKMYSMAGNYDKCLEVYQEMKVLGVKPNVATYNTLLGAMLRSKKHRQAKAIHKEMK 323
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+N +S +++ + + + V+ ++ G + YN LL +G
Sbjct: 324 SNGVSPDFITYASLLEVYTRAQCSEDALG-VYKEMKGNGMDMTADLYNKLLAMCADVGYT 382
Query: 181 ERAARVLDEATKRG 194
+RA + E G
Sbjct: 383 DRAVEIFYEMKSSG 396
>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Glycine max]
Length = 777
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + +L+++ E+GV + S+N ++ A+ Q G ++AI +ME+ +PN T
Sbjct: 339 GRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITF 398
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+S +C G VD ++ + + G+ P+V Y L+ Y + + + LDEM
Sbjct: 399 NTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDK 458
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I G +I D E V + G YN L+EA L +
Sbjct: 459 AGIKPNVISYGSLINCLCKDRKLID-AEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLK 517
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R DE + G+ L +N L+
Sbjct: 518 DAFRFFDEMIQSGIDATLVTYNTLI 542
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 8/197 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M + G+ + ++N V+ + R ++A K + EM + PN T ++ YC
Sbjct: 179 LMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYC 238
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++E+ + +K + +++ Y LL S R DDA +L EM +
Sbjct: 239 KVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGF----- 293
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ G + FDD SN + +FD + R Y LL L +G E+A VL +
Sbjct: 294 LPGGFLSFVFDDHSNGAGDDGLFDGKEIR---IDERTYCILLNGLCRVGRIEKAEEVLAK 350
Query: 190 ATKRGLFPELFRHNKLV 206
+ G+ P +N LV
Sbjct: 351 LVENGVTPSKISYNILV 367
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 17/230 (7%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K+ + + M + + N+ ++N +I+ + + G EEA+ M++ + N T ++
Sbjct: 209 KDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSL 268
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD--EMHTN 122
L+ C +G VD+++E E++ SG LP L V+ + GL D E+ +
Sbjct: 269 LNGLCGSGRVDDAREVLLEMEGSGFLPG----GFLSFVFDDHSNGAGDDGLFDGKEIRID 324
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ + G G + E V KL G YN L+ A G ++
Sbjct: 325 ERTYCILLNGLCRVGRI------EKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKK 378
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
A ++ +RGL P N++ ++ + + E G W+ +M E
Sbjct: 379 AILTTEQMEERGLEP-----NRITFNTVISKFCETGEVDHAETWVRRMVE 423
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 57/114 (50%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L+ M GV+ N++ +N +IEA + ++A + + EM + D T ++
Sbjct: 483 DAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLI 542
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ G V ++++ F ++ G P V+ Y L++ YAKS L D+M
Sbjct: 543 NGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKM 596
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 85/207 (41%), Gaps = 2/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + C L M ++G+ N S+ ++I + + +A +M PN
Sbjct: 444 GHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIY 503
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C + ++ F E+ SGI +++ Y L+ ++ R A L +M
Sbjct: 504 NMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQM-A 562
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N +T + + N Q ++DK+ G + ++ L+ A G+
Sbjct: 563 GKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVVT 622
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
++ E + L P+ F +N++++S
Sbjct: 623 -MDKMFQEMLQMDLVPDQFVYNEMIYS 648
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 92/210 (43%), Gaps = 18/210 (8%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K+ M +SG+ ++N +I + GR ++A +++M C+P+ T ++
Sbjct: 517 KDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSL 576
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+S Y + + E + ++K GI P+V + L+ K + +D+M +
Sbjct: 577 ISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRK-----EGVVTMDKMFQEML 631
Query: 125 SNIHQVTGQMIKGE----FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ V Q + E + ++ N + ++ +G YN+L+ A LR
Sbjct: 632 Q-MDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAY----LR 686
Query: 181 ERAA----RVLDEATKRGLFPELFRHNKLV 206
+R ++D+ +GL P++ +N L+
Sbjct: 687 DRRVSEIKHLVDDMKAKGLVPKVDTYNILI 716
>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 485
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 5/194 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + ++ M + N +F AVI+ F + G+F EA+K Y EM + DP+ T
Sbjct: 222 SGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFT 281
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++++ C G VDE+K+ + + G LP V+ Y L+ + KS R D+ L EM
Sbjct: 282 YNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMA 341
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +I+G F + +F +++ +R Y+ LL L C+ R
Sbjct: 342 QRGLVGDTITYNTIIQGYF-QAGRPDAAQEIFSRMDSRP---NIRTYSILLYGL-CMNWR 396
Query: 181 ERAARVLDEATKRG 194
A VL E ++
Sbjct: 397 VEKALVLFENMQKS 410
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 92/198 (46%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+++ +M + G + + +++I F QG R +AI +ME++ P+ ++
Sbjct: 125 SVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGS 184
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C GLV+++ E F ++ G+ + Y L+A S RW DA L+ +M I +
Sbjct: 185 CKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVP-N 243
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+T + F E + +++++ + YN+L+ L G + A ++LD
Sbjct: 244 VITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLD 303
Query: 189 EATKRGLFPELFRHNKLV 206
+G P++ +N L+
Sbjct: 304 LMVTKGCLPDVVTYNTLI 321
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/204 (18%), Positives = 86/204 (42%), Gaps = 1/204 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M G+ + S+N VI + RF A+ +M K +P+ T+ ++++ +
Sbjct: 90 SLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGF 149
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C V ++ + +++ G P V+ Y ++ K +DA L D M + +
Sbjct: 150 CQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADA 209
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G W + + + + A+++ G A ++ +
Sbjct: 210 VTYNSLVAG-LCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYE 268
Query: 189 EATKRGLFPELFRHNKLVWSVDVH 212
E T+R + P++F +N L+ + +H
Sbjct: 269 EMTRRCVDPDVFTYNSLINGLCMH 292
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q I SRM N +++ ++ R E+A+ + M+K + + T V+
Sbjct: 369 QEIFSRMDSRP---NIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHG 425
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
C G V+++ + F+ + G+ P V+ Y +++ + + +WD + L +M
Sbjct: 426 MCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQ 478
>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 1/190 (0%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
SG++ + + VI GR EEA + EM P R A+L Y AGL+ +
Sbjct: 300 SGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRD 359
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136
++ E++ SG+LP+ Y +L+ Y + RW+ A +L EM + + V +++
Sbjct: 360 AEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRIL- 418
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
+ D+ WQ V ++ G FYN L++ + A D G+
Sbjct: 419 ASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIE 478
Query: 197 PELFRHNKLV 206
P+ N LV
Sbjct: 479 PDTITWNTLV 488
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ +L M +SGV + +N +I+ F + + A+ + M +P+ T
Sbjct: 425 GEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITW 484
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C AG D ++E F+E+ G LP + +++ + RWDD LL M +
Sbjct: 485 NTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRS 544
Query: 122 -----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N ++ + G FDD +E D + G YNALL A
Sbjct: 545 QGLLPNAVTYTTLIDIYGKSGRFDDA-----IE-CLDDMKAAGLKPSSTMYNALLNAYAQ 598
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
GL ++A GL P L N L+
Sbjct: 599 RGLSDQAVSAFWAMRDDGLKPSLLALNSLI 628
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 95/215 (44%), Gaps = 1/215 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +AI M ++G+ + ++NA++ + + G +A EME+ PNE+T
Sbjct: 320 GRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTY 379
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y A + ++ +E+++S + P+ + +LA Y W + +L EM
Sbjct: 380 SLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMED 439
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + ++ ++ F + FD++ EG +N L++ G +
Sbjct: 440 SGVRP-DRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHD 498
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
RA + +E ++G P N ++ S W+
Sbjct: 499 RAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWD 533
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 94/240 (39%), Gaps = 34/240 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL ++ + ++S M SGV N +++ +I+A+ R+E A EME PN
Sbjct: 354 AGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYV 413
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L+ Y G ++ + +E++ SG+ P + Y +L+ + K N D A D M
Sbjct: 414 FSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRML 473
Query: 121 T----------NRISNIHQVTGQMIKGE------------------------FDDESNWQ 146
+ N + + H G+ + E F D+ W
Sbjct: 474 SEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWD 533
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V+ + + +G Y L++ G + A LD+ GL P +N L+
Sbjct: 534 DVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALL 593
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/151 (18%), Positives = 60/151 (39%), Gaps = 35/151 (23%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + + +L+ M G+ N+ ++ +I+ + + GRF++AI+ +M+ P+ A
Sbjct: 532 WDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNA 591
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPS------------------------------- 92
+L+ Y GL D++ F ++ G+ PS
Sbjct: 592 LLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKEND 651
Query: 93 ----VMCYCMLLAVYAKSNRWDDAYGLLDEM 119
V+ Y L+ ++D + +EM
Sbjct: 652 LKPDVVTYTTLMKALILVEKFDKVPSVYEEM 682
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 103/232 (44%), Gaps = 6/232 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG Y + ++ + + ++ +F + +F + GR + A + EM K DP T
Sbjct: 265 GGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHT 324
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ +G +DE+ + F +K+ P+V+ Y L+ AK+ R ++A + EM
Sbjct: 325 FTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMK 384
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N S +I G M +F ++ G +R YN ++ L G +
Sbjct: 385 ENNCSPDAIAYNTLIDG-LGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQ 443
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
A ++ + ++G P++F +N L +DV + +GG + + +M E
Sbjct: 444 PEAWQLFHDLKEQGAVPDVFTYNTL---IDV--LGKGGQMDKVLAIIKEMVE 490
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 7/200 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I ++M G +++ +N V+E +GG + A+ + ++ + R P+ +T + +
Sbjct: 239 IFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFN 298
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G +D + E QE+ SGI P V + +L+ KS D+A + M R S +
Sbjct: 299 RSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSP-NV 357
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKL---NCEGYGLGMRFYNALLEALWCLGLRERAARV 186
VT + + VF ++ NC + YN L++ L G + A +
Sbjct: 358 VTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIA---YNTLIDGLGKAGEADMACGL 414
Query: 187 LDEATKRGLFPELFRHNKLV 206
E RGL P L +N ++
Sbjct: 415 FKEMKDRGLVPNLRTYNIMI 434
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 92/208 (44%), Gaps = 1/208 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + ++M+E G + ++ ++++ +GG+ A+ + M K RC P+ T
Sbjct: 752 GRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTY 811
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ G V+E+ F+ S G P+V Y L+ + K D A L +EM
Sbjct: 812 SSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQ- 870
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R + VT + + E + +++ G + YN L++ + +G+ +
Sbjct: 871 RRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVD 930
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
A ++G+ P++ L+ S+
Sbjct: 931 EAESYFKRMKEKGIVPDVITFTSLIESL 958
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 1/181 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G N ++++I++F + G + A++ + EM++ +C PN T +LS AG ++ +
Sbjct: 838 GCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVA 897
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
++ +E++ G +P ++ Y +L+ K D+A M I +I+
Sbjct: 898 EKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIES 957
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ + E +FD + EGY + YN L++ L G AA + E +G P
Sbjct: 958 LGKVDKLLEACE-LFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMP 1016
Query: 198 E 198
+
Sbjct: 1017 D 1017
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N ++ AF G +EA+K M+K C P T ++ AG +DE+ +E+
Sbjct: 530 TYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREM 589
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RISNIHQVTGQMIKGEFD 140
+ G PSV+ Y L+A + K ++ +++ L DEM +S V + K +
Sbjct: 590 EKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDV 649
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
D++ VF ++ EG + Y LL +L + A ++ +E + L P+ F
Sbjct: 650 DQA-----LDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTF 704
Query: 201 RHNKLV 206
+N +V
Sbjct: 705 VYNIMV 710
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++L M + G + ++++++ +F + + EE++ + EM + C + T
Sbjct: 577 GRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTY 636
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V++ C + VD++ + F +K G+ P + Y LL+ K + D A + +E+
Sbjct: 637 SLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQE 696
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + V M+ G + + V D + + + Y +LL+ L G E
Sbjct: 697 SSLVPDTFVYNIMVNGLVKSNRVDEACKLV-DSMKNQNILPDLFTYTSLLDGLGKSGRLE 755
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + + T+ G P++ + L+
Sbjct: 756 EAFNMFTKMTEEGHEPDVVAYTSLM 780
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 85/207 (41%), Gaps = 7/207 (3%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ M + + ++ ++++ + GR EEA + +M + +P+ +++
Sbjct: 721 EACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLM 780
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
V G + + F+ + +P V+ Y L+ K R ++AY + N IS
Sbjct: 781 DVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFE----NSIS 836
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEY---VFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ D MV+ +F+++ + YN LL L G
Sbjct: 837 KGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNV 896
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSV 209
A ++L+E K G P+L +N L+ V
Sbjct: 897 AEKLLEEMEKVGCVPDLVTYNILIDGV 923
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E ++ RM E G+ + +F ++IE+ + + EA + + ME+ +P+ T
Sbjct: 927 GMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTY 986
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILP 91
++ + AG V E+ F E+K G +P
Sbjct: 987 NVLIDILGRAGKVHEAAMIFHEMKVKGCMP 1016
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 31/149 (20%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EK-----VRCD 55
G E + + E G + ++N +I+ +GG+ ++ + EM EK + D
Sbjct: 441 GRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRD 500
Query: 56 PN----------ERTLE---------------AVLSVYCFAGLVDESKEQFQEIKSSGIL 90
N +RT+E ++S + G VDE+ + + +K +
Sbjct: 501 SNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECI 560
Query: 91 PSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
P+V+ Y L+ K+ R D+A LL EM
Sbjct: 561 PTVVTYTTLVDGLGKAGRLDEAVSLLREM 589
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 98/198 (49%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ +M E G+ N +F A+I+ F + G ++A+ A EM + R P+ +++ Y
Sbjct: 316 ALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGY 375
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G +DE++E E+++ G+ P V+ Y +L+ Y K D A+ L +M +
Sbjct: 376 CKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDA 435
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+I+G ++ E +F+K+ G Y L++ G ++A + D
Sbjct: 436 ITYSSLIRGLCEERRLGDACE-LFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHD 494
Query: 189 EATKRGLFPELFRHNKLV 206
E K+G+ P++ ++ L+
Sbjct: 495 EMIKKGVLPDVVTYSVLI 512
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 91/198 (45%), Gaps = 2/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVE-MEKVRCDPNERTLEAVLSVY 68
+L+ M GVA N ++N ++ A G+ EEA+ + M C PN T +++ +
Sbjct: 141 LLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAF 200
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C AG VD ++ ++ G+ PS++ + ++ K+ R +DA + DEM ++
Sbjct: 201 CRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDG 260
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G + VF ++ +G + + +L+ A+ G ERA ++
Sbjct: 261 VSYNTLVSG-YCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVG 319
Query: 189 EATKRGLFPELFRHNKLV 206
+ +RGL F L+
Sbjct: 320 QMRERGLRMNEFTFTALI 337
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 9/197 (4%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E GV + +FN V+ + GR E+A K + EM + P+ + ++S YC AG
Sbjct: 216 MREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGC 275
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E+ F E+ G++P V+ + L+ ++ + A L+ +M +
Sbjct: 276 LHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTA 335
Query: 134 MIKG----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G F D++ M E ++ + YN L+ LG + A ++ E
Sbjct: 336 LIDGFCRNGFLDDALLAMKEMRECRIQPS-----VVCYNVLINGYCKLGRMDEARELIHE 390
Query: 190 ATKRGLFPELFRHNKLV 206
+G+ P++ ++ ++
Sbjct: 391 MEAKGMKPDVVTYSTIL 407
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 58/108 (53%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + GV ++ +++++I + R +A + + +M ++ P+E T ++ +C G
Sbjct: 425 KMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEG 484
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V ++ E+ G+LP V+ Y +L+ +KS R +A LL +++
Sbjct: 485 NVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLY 532
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 16/222 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL ++ + +M + G+ + ++ ++ F G+ E A++ + EM KV C PN T
Sbjct: 333 GGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICT 392
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ +Y G +E + F+EIK P ++ + LLAV+ ++ + G+ +EM
Sbjct: 393 FNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMK 452
Query: 121 TNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
+R + +I G FD M Y ++ G + YNA+L L
Sbjct: 453 RSRFAPERDTFNTLISAYGRCGSFDQ----AMAAY--KRMLEAGVSPDLSTYNAVLATLA 506
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEG 217
GL E++ +VL E G P N++ +S +H G
Sbjct: 507 RGGLWEQSEKVLAEMKDGGCKP-----NEVTYSSLLHAYANG 543
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 7/210 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ E + M S A D+FN +I A+ + G F++A+ AY M + P+ T
Sbjct: 438 NGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLST 497
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AVL+ GL ++S++ E+K G P+ + Y LL YA + L +E++
Sbjct: 498 YNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIY 557
Query: 121 TNRISNIHQV---TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ I H V T ++ + D E F + G + NA+L
Sbjct: 558 SGTIKT-HAVLLKTLVLVNSKVD---LLVETERAFLEFRKRGISPDVTTSNAMLSIYGRK 613
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVW 207
+ +A +L+ + GL L +N L++
Sbjct: 614 KMVPKANEILNFMYESGLTLSLTSYNSLMY 643
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 100/248 (40%), Gaps = 51/248 (20%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++L + G + + ++I A+ ++ +A+K + +M++V C+P T
Sbjct: 158 GRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITY 217
Query: 62 EAVLSVY-----------------------------------CFAG-LVDESKEQFQEIK 85
A+L+VY C AG L +E+ + F+EIK
Sbjct: 218 NAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIK 277
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RISNIHQVTGQMIKGEFDD 141
+G P + Y LL VY KS R +A +L +M +N + + + ++G +
Sbjct: 278 VAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLE 337
Query: 142 ES---NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
++ +MV+ +G + Y LL G E A V +E K G P
Sbjct: 338 DALVLKRKMVD--------KGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPN 389
Query: 199 LFRHNKLV 206
+ N L+
Sbjct: 390 ICTFNALI 397
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 90/198 (45%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ M G+A + ++N +I R G +EEA+ + E++ P+ T A+L VY
Sbjct: 236 ALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVY 295
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+ E+ E ++++S+ PSV+ Y L++ Y + +DA L +M I
Sbjct: 296 GKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDV 355
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G F + ++ VF+++ G + +NAL++ G E +V
Sbjct: 356 YTYTTLLSG-FVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFK 414
Query: 189 EATKRGLFPELFRHNKLV 206
E P++ N L+
Sbjct: 415 EIKVCKCSPDIVTWNTLL 432
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 100/237 (42%), Gaps = 12/237 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY+E + + +G ++ ++NA+++ + + R +EA++ +ME P+ T
Sbjct: 263 GSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVT 322
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++S Y GL++++ +++ GI P V Y LL+ + + + + A + +EM
Sbjct: 323 YNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMR 382
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+IK + D ++ + VF ++ + +N LL G+
Sbjct: 383 KVGCKPNICTFNALIK-MYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMD 441
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWS-----------VDVHRMWEGGAYTAISVW 226
+ V +E + PE N L+ + RM E G +S +
Sbjct: 442 SEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTY 498
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 60/117 (51%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ + IL+ M ESG+ + S+N+++ + + F ++ + + E+ +P+ +
Sbjct: 615 MVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYN 674
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
V+ YC ++DE+K +E+K +P V+ Y +A YA + + +A ++ M
Sbjct: 675 IVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYM 731
Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + I+ M + ++N I A+ F EAI M K C PN T +++
Sbjct: 688 EAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIV 747
Query: 66 SVYCFAGLVDES 77
YC L DE+
Sbjct: 748 DWYCKLKLRDEA 759
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E +L M E G+ + ++N +I + G+ +E + EM K P+ T
Sbjct: 514 AGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYT 573
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L C A +DE+ + E K +G +P+V Y +++ Y K+N+ ++ LL+E+
Sbjct: 574 FNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELV 633
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ ++ V +I+ + N + D + G L Y++L+ L +GL
Sbjct: 634 SKKLELNSVVYNSLIRA-YCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLV 692
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A +LDE K GL P + + ++
Sbjct: 693 DDAKHLLDEMRKEGLLPNVVCYTTII 718
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 89/199 (44%), Gaps = 36/199 (18%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + +L+ + + NS +N++I A+ G A + +M+ + T ++
Sbjct: 623 EEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSL 682
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ C GLVD++K E++ G+LP+V+CY ++ Y+K + + +L EM ++
Sbjct: 683 MHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSH-- 740
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
NIH +F Y +++ LG + AA
Sbjct: 741 -NIHP-------NKFT--------------------------YTIMIDGFCKLGKTKEAA 766
Query: 185 RVLDEATKRGLFPELFRHN 203
++L+E T++G+ P+ +N
Sbjct: 767 KLLNEMTEKGILPDAVTYN 785
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 1/178 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G+ + F+ +I AF +G R ++AI + +MEK+ PN T ++ C +G +DE+
Sbjct: 251 GIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEA 310
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+++ + PS++ Y + + K + D+A +L EM V +I G
Sbjct: 311 YRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDG 370
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ N + D + +G N+L++ +A VL+E RGL
Sbjct: 371 -YCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGL 427
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 3/190 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ S+M + GVA N ++N +I + GR +EA + +M K + P+ T ++
Sbjct: 277 GLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGL 336
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+DE+ +E+ G +P+ + Y L+ Y K +A + D+M + IS
Sbjct: 337 IKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNS 396
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVL 187
+I+G F E V +++ G + ++ ++ L CL R A +
Sbjct: 397 VTLNSLIQG-FCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWL-CLKFRFVTALHFI 454
Query: 188 DEATKRGLFP 197
E R L P
Sbjct: 455 REMLLRNLRP 464
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 88/201 (43%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L MSE G N +N +I+ + + G EA+K +M PN TL +++
Sbjct: 344 EANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLI 403
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+C + + +++ +E+ G+ + + M++ R+ A + EM +
Sbjct: 404 QGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLR 463
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ ++ G + VE ++ +L +G+ + NAL+ L G + +
Sbjct: 464 PNDGLLTTLVSGLCKAGKQGEAVE-LWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLK 522
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+L + +RGL + +N L+
Sbjct: 523 LLRDMLERGLVFDRITYNTLI 543
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 53/123 (43%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + + +L M + G+ N + +I + + G+ + EM PN+ T
Sbjct: 690 GLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTY 749
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G E+ + E+ GILP + Y K + ++A+ + DEM +
Sbjct: 750 TIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSS 809
Query: 122 NRI 124
+
Sbjct: 810 GAV 812
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 11/156 (7%)
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
P+ +T +LS A + +S E + I GI+P V + ++ + K +R DDA GL
Sbjct: 219 PSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGL 278
Query: 116 LDEMH-----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
+M N ++ + + G G D+ ++ +K+ E + Y+
Sbjct: 279 FSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFK------EKMVKEKVSPSLITYSVF 332
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ L L + A VL E ++ G P +N L+
Sbjct: 333 INGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLI 368
>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
Length = 651
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 6/207 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + M +G+ + +N ++ AF + GR ++A+ +E R P T
Sbjct: 338 GGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIET 397
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L Y G + ++ E F IK++G+ P V+ Y LL+ AK+ + ++A +L+EM
Sbjct: 398 YTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEML 457
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + ++ + +G + + + VF ++ E + + Y ALL+A G
Sbjct: 458 ANGVVPSERIYTALTEG-YARTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAM 516
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVW 207
AA V + T GL +HN++ +
Sbjct: 517 HGAAEVFQQITDAGL-----KHNQITY 538
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 20/215 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAF-------------------RQGGRFEEA 42
G + +A+L++M E G N + V+ F Q G +A
Sbjct: 250 GNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKA 309
Query: 43 IKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102
+ EM+K PN+ ++ Y G + + ++++ S+G+ P ++ Y +L+
Sbjct: 310 LDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHA 369
Query: 103 YAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL 162
+ K+ R D A G+L+ + NR+ + ++ G + N Q VFD++ G
Sbjct: 370 FCKAGRMDKALGVLENIEANRLLPTIETYTSILDG-YVKGGNIQKALEVFDRIKTAGLRP 428
Query: 163 GMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
G+ YN+LL L E A +L+E G+ P
Sbjct: 429 GVVSYNSLLSGLAKARQMENARLMLNEMLANGVVP 463
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M +GV + + A+ E + + G E+A + M+K + A+L C
Sbjct: 452 MLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACC 511
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYC-MLLAVYAKSNRWDDAYGLLDEM 119
+G + + E FQ+I +G+ + + YC ML YA++ R ++A L+ M
Sbjct: 512 NSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAEELVSAM 562
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Query: 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
G + + + A+ ++K P R ++ Y G ++ F+ +++S I P+V Y
Sbjct: 114 GNWHKIVNAFQVIDK----PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIY 169
Query: 97 CMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN 156
L+ YA++ + A +EM + I V +I G + N + E+ F+K
Sbjct: 170 TSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISG-YASAGNNEAAEHWFEKFK 228
Query: 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
E G YN++++A G E +L + + G
Sbjct: 229 AENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGF 267
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E I+ M E G+ + ++NA+I F G+ E + EM K P+ T
Sbjct: 501 AGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYT 560
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L C G +D++ + + E K+SG++ ++ Y +++ Y K+NR +D L +E+
Sbjct: 561 YNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELL 620
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ ++ V +IK + N + + + +G Y++L+ + +GL
Sbjct: 621 SKKMELNSIVYNIIIKAHCQN-GNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLV 679
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E A ++DE K G P + + L+
Sbjct: 680 EDAKHLIDEMRKEGFVPNVVCYTALI 705
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 64/120 (53%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + ++ M + G N + A+I + + G+ + A ++EM PN+ T
Sbjct: 677 GLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTY 736
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC G ++++ ++K SGI+P V+ Y +L + K+N D+A+ + D+M T
Sbjct: 737 TVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMAT 796
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++C + MSE G + SF VI A +GG+ E AI+ +++MEK+ PN T
Sbjct: 225 FEKCCEVFRVMSE-GACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNC 283
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ C G +D + E +++ G+ P++ Y L+ K N +D +LDEM
Sbjct: 284 IINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEM 339
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 5/210 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER-T 60
G + E + R+ E G + + NA+I G+ EA + EM + R P +R T
Sbjct: 467 GKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLE-RGLPMDRIT 525
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ +C G V+ +E+ GI P + Y LL + DDA L DE
Sbjct: 526 YNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFK 585
Query: 121 -TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ ISNIH G M++G + + + VE +F++L + L YN +++A G
Sbjct: 586 ASGLISNIHTY-GIMMEG-YCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGN 643
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSV 209
A ++L+ +G+ P ++ L+ V
Sbjct: 644 VAAALQLLENMKSKGILPNCATYSSLIHGV 673
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 11/190 (5%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
NS +N +I+A Q G A++ M+ PN T +++ C GLV+++K
Sbjct: 627 NSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLI 686
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIK 136
E++ G +P+V+CY L+ Y K + D A EM H N+ + + G
Sbjct: 687 DEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKL 746
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
G + +N + K+ G + YN L + A +V D+ GL
Sbjct: 747 GNMEKANNLLI------KMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLP 800
Query: 197 PELFRHNKLV 206
+ + LV
Sbjct: 801 VDEITYTTLV 810
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 86/184 (46%), Gaps = 2/184 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
++ G + + N ++ + + FE+ + + M + C P+ + V++ C G
Sbjct: 200 LARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGAC-PDVFSFTNVINALCKGGK 258
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ + E F +++ GI P+V+ Y ++ ++ R D+A+ L ++M + + G
Sbjct: 259 MENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGA 318
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G + + V +V D++ G+ + +N L++ +G E A ++ D +
Sbjct: 319 LING-LIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISK 377
Query: 194 GLFP 197
+ P
Sbjct: 378 NITP 381
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 3/205 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ + +L M SG N FN +I+ + + G E A+K M P TL
Sbjct: 328 FFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLY 387
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C + ++ ++ +EI SSG+ + CY ++ + K R+ A+ M +
Sbjct: 388 SLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWL-CKKFRYHSAFRFTKMMLS 446
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ ++ G D + + E F L +G NAL+ L G
Sbjct: 447 RNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLE-KGSPASKVTSNALIHGLCGAGKLP 505
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A+R++ E +RGL + +N L+
Sbjct: 506 EASRIVKEMLERGLPMDRITYNALI 530
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 59/137 (43%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + +M + G++ N ++N +I Q GR + A + +M PN +T
Sbjct: 256 GGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKT 315
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+++ D+ E+ SG P+V+ + L+ Y K + A + D M
Sbjct: 316 YGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMI 375
Query: 121 TNRISNIHQVTGQMIKG 137
+ I+ +++G
Sbjct: 376 SKNITPTSVTLYSLMQG 392
>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 732
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 11/212 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M GV N +++ VI A + G++EEA+ EM++ P+ T + +S
Sbjct: 313 LLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACA 372
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +E+ +E+ G+ P+ + Y ++++ AK RW +A LL EM H
Sbjct: 373 KKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQA------HG 426
Query: 130 VTGQMI--KGEFD---DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
V +I D S W+ ++ ++ G + YN+ ++A G + A
Sbjct: 427 VPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAV 486
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+L E GL P++ ++ ++ S + R WE
Sbjct: 487 ELLREMPAHGLAPDVITYSAVIASCAMGRQWE 518
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 1/213 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+KE +L M GV N ++A I A R+GG++E A+ EM V P+ T
Sbjct: 237 WKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYST 296
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
V+ G + + E+ + G++ +++ Y +++ AK +W++A LL EM N
Sbjct: 297 VIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENG 356
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
++ +T + W+ + ++ EG Y ++ A G A
Sbjct: 357 VAP-DVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREA 415
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+L E G+ P++ ++ + + WE
Sbjct: 416 IDLLQEMQAHGVPPDVINYSAAIDACAQASRWE 448
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 91/215 (42%), Gaps = 1/215 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ +L RM E GV +S ++++ I A ++E A++ M P+ T
Sbjct: 165 GDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTY 224
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ ++ E+ + +K G+ P+V+ Y ++ K +W+ A LL EM
Sbjct: 225 SSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPA 284
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ +T + W+ + ++ +G + Y+ ++ A G E
Sbjct: 285 VGLAP-DVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWE 343
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A +L E + G+ P++ ++ + + WE
Sbjct: 344 EAVALLREMQENGVAPDVITYSSTISACAKKGQWE 378
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E +L M GV N+ S+ VI A + GR+ EAI EM+ P+
Sbjct: 375 GQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINY 434
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A + A +++ +E+ ++G+ P+V+ Y + AK+ R A LL EM
Sbjct: 435 SAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPA 494
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ ++ +T + W+ +F ++ +G + N + A G E
Sbjct: 495 HGLAP-DVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWE 553
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A VL E GL P+ + +
Sbjct: 554 EALDVLGEMPTMGLVPDAISYRTAI 578
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++E +L M G+ ++ S+ I+A +G R++E I EM V P+ +
Sbjct: 549 GGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAIS 608
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+S GL E+ +++ + G+ P V+ Y + AK RW +A LL +M
Sbjct: 609 YRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMP 668
Query: 121 T 121
T
Sbjct: 669 T 669
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 9/228 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M G+A + +++AVI + G ++EEA+ + EM++ P+ + ++
Sbjct: 488 LLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACA 547
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +E+ + E+ + G++P + Y + AK +RW + LL EM T ++
Sbjct: 548 QGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTP-DA 606
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ + + W+ + + G + YN+ + A G + A +L +
Sbjct: 607 ISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQ 666
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMG 237
GL P++ N + + W TA+ V ++EM +G
Sbjct: 667 MPTFGLAPDVNSFNAAIDACGNGDQWG----TAVEV----LFEMRALG 706
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 1/191 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
A + +Q G + +A+ M++ P+ + + ++ A + + E +
Sbjct: 154 LKATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMA 213
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+ G P V+ Y +A AK +RW +A GLL M + V I W
Sbjct: 214 ARGTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISA-CRKGGQW 272
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+ + ++ G + Y+ +++A G E A R+L E +G+ + ++ +
Sbjct: 273 ETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIV 332
Query: 206 VWSVDVHRMWE 216
+ + WE
Sbjct: 333 IGACAKWGQWE 343
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE +L +M G+A + +SFNA I+A G ++ A++ EM + PNE T
Sbjct: 654 GGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEAT 713
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 1/173 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++E + M G+ + S N I A QGG +EEA+ EM + P+ +
Sbjct: 514 GRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAIS 573
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ E + +E+ + G+ P + Y ++ + W +A LL +M
Sbjct: 574 YRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDML 633
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
+S VT W+ + ++ G + +NA ++A
Sbjct: 634 AVGLSP-DVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDA 685
>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
Length = 786
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 2/204 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYV-EMEKVRCDPNER 59
G Y+ + + + GVA ++N V++ + + GR I A + EM +P++
Sbjct: 186 AGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDF 245
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T V++ C GLVDE+ F+++K+ G P V+ Y LL V+ K+ + +A +L EM
Sbjct: 246 TASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEM 305
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ VT + G + ++ D + +G YN ++ A +G
Sbjct: 306 EQDGCQP-DAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGK 364
Query: 180 RERAARVLDEATKRGLFPELFRHN 203
+ A + D+ K G P + +N
Sbjct: 365 VDEALALFDQMKKSGCVPNVNTYN 388
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 95/239 (39%), Gaps = 34/239 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E A + G ++NA+++ F + G + EA++ EME+ C P+ T
Sbjct: 258 GLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTY 317
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+ Y AG +E+ + + S G+LP+ Y ++ Y + D+A L D+M
Sbjct: 318 NELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKK 377
Query: 120 ------------------HTNRISNIHQVTGQMIK-GEFDDESNWQM------------- 147
+R + + ++ G+M + G + W
Sbjct: 378 SGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDY 437
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V V + + G L YN L+ A G R A ++ +E T G P L +N L+
Sbjct: 438 VTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALL 496
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M GV + D++N +I A+ + G A K Y EM P T A+L+V
Sbjct: 441 VLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLS 500
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ ++++ G P+ Y +LL YAK + E++ +
Sbjct: 501 RQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWV 560
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ ++ F +E F ++ GY + +N++L G+ + + D
Sbjct: 561 ILRTLVIANFKCR-RLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDS 619
Query: 190 ATKRGLFPELFRHNKLV 206
+ GL P+L +N L+
Sbjct: 620 IKQSGLSPDLITYNSLM 636
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + Q+I+S+M G N S++ +++ + +GG E+ P+ L
Sbjct: 503 GDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVIL 562
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + ++ FQE+K+ G P ++ + +L++YAK+ + + D +
Sbjct: 563 RTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQ 622
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +S ++ +W+ E + ++L + YN ++ GL +
Sbjct: 623 SGLSPDLITYNSLMDMYAKCSESWE-AEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIK 681
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+L E G+ P + ++ LV
Sbjct: 682 EAQRILSEMIADGMAPCVVTYHTLV 706
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 62/118 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+Y + I + +SG++ + ++N++++ + + EA K +++ + P+ +
Sbjct: 608 GMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSY 667
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
V++ +C GL+ E++ E+ + G+ P V+ Y L+ YA + +A +++ M
Sbjct: 668 NTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYM 725
>gi|222613030|gb|EEE51162.1| hypothetical protein OsJ_31934 [Oryza sativa Japonica Group]
Length = 404
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 1/169 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + G+A + ++N++I G+ EE +K EME + PNE T VL +C
Sbjct: 221 VFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFC 280
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G++ ++ + + + P V+ Y +L+ VY + + +DA + + M IS
Sbjct: 281 KKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVT 340
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+I G F +W+ + D++ +G + YN L+ AL C G
Sbjct: 341 TYNCLITG-FSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKG 388
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 9/164 (5%)
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG---LLDEMHTNRISNIH 128
G + ++ + ++IK+ G+ PSV Y L+ Y K + Y LL EM IS
Sbjct: 140 GQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTA 199
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
G +I G + SN VF+++ +G + YN+L+ L G E ++++
Sbjct: 200 VTFGVLING-YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLME 258
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
E GL P N++ + + + G + W++ M E
Sbjct: 259 EMEDLGLSP-----NEITFGCVLKGFCKKGMMADANDWIDGMTE 297
>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
Length = 729
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 94/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ILS + G ++ ++ V+++ R++E + + EM +C P+E T
Sbjct: 246 GDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTF 305
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C GLVD + + + G +P ++ Y +L R DDA LL + +
Sbjct: 306 NTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKS 365
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++KG E W+ E + ++ C +N ++ +L GL +
Sbjct: 366 YGCKPDTIAYTTVLKGLCSIE-QWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVD 424
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA +V+++ ++ G P++ +N ++
Sbjct: 425 RAIKVVEQMSENGCNPDIVTYNSII 449
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 98/243 (40%), Gaps = 11/243 (4%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+KE + + + M+ + A + +FN ++ + Q G + AIK M + C P+ T +
Sbjct: 283 WKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSS 342
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L C G VD++ E +KS G P + Y +L +W+ A L+ EM +
Sbjct: 343 ILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSD 402
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+VT + + V ++++ G + YN++++ L + A
Sbjct: 403 CPP-DEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDA 461
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQL 243
+L G P++ N L+ + WE ++ MM D P
Sbjct: 462 MELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVN----------MMHSDCPPD 511
Query: 244 ATV 246
AT
Sbjct: 512 ATT 514
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 86/191 (45%), Gaps = 2/191 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+FN +I A GR +A+ + +M C P+ T +L C A ++ E+
Sbjct: 164 TFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEM 223
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
++ G P ++ Y +L+ D+A +L ++ ++ VT +
Sbjct: 224 RAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKP-DAVTYTPVLKSLCGSER 282
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
W+ VE +F ++ +N ++ +L GL +RA +V+D ++ G P++ ++
Sbjct: 283 WKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSS 342
Query: 205 LVWSV-DVHRM 214
++ + DV R+
Sbjct: 343 ILDGLCDVGRV 353
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 89/215 (41%), Gaps = 1/215 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ M G + + +++ +++A + + +A+ EM C+P+ T
Sbjct: 176 GRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTY 235
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G VDE+ ++ S G P + Y +L S RW + L EM +
Sbjct: 236 NVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMAS 295
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N+ + +VT I + V D ++ G + Y+++L+ L +G +
Sbjct: 296 NKCAP-DEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVD 354
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A +L G P+ + ++ + WE
Sbjct: 355 DAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWE 389
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 80/197 (40%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LSR+ G ++ ++ V++ ++E A + EM C P+E T V++ C
Sbjct: 359 LLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLC 418
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GLVD + + +++ +G P ++ Y ++ DDA LL + +
Sbjct: 419 QKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIV 478
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++KG W+ E + + +N ++ +L GL +A L
Sbjct: 479 TFNTLLKG-LCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKI 537
Query: 190 ATKRGLFPELFRHNKLV 206
+ G P +N +V
Sbjct: 538 MAENGCIPNQSTYNIVV 554
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 85/208 (40%), Gaps = 9/208 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS + G + +FN +++ R+E+A + V M C P+ T V++ C
Sbjct: 464 LLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLC 523
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL+ ++ E + + +G +P+ Y +++ K+ + +A LL M TN ++
Sbjct: 524 QKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGM-TNGTPDL-- 580
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T + + + + G Y +L + +RA R+L
Sbjct: 581 ITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCR 640
Query: 190 ATKRGLFPELFRHNKLV------WSVDV 211
GL P+ +N ++ W D+
Sbjct: 641 LQDMGLSPDATFYNDILLGFCQNWRTDI 668
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + L M+E+G N ++N V++A + G+ +EA+K M P+ T
Sbjct: 526 GLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGT--PDLITY 583
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+S AG ++E+ + + + S+G+ P + Y L AYG+ E T
Sbjct: 584 NTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSL------------AYGICREDGT 631
Query: 122 NR 123
+R
Sbjct: 632 DR 633
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ + ++ M S ++ +FN VI + Q G +AI+ M + C PN+ T
Sbjct: 493 WEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNI 552
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
V+ AG E+ + + + P ++ Y +++ K+ + ++A LL M +N
Sbjct: 553 VVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVISNITKAGKMEEALDLLRVMVSNG 610
Query: 124 IS 125
+S
Sbjct: 611 LS 612
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L R+ + G++ ++ +N ++ F Q R + AI + M C P+E T +L
Sbjct: 637 MLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALA 696
Query: 70 FAGLVDESKEQFQEIKSSGIL 90
+ L+DE+K+ + S G+L
Sbjct: 697 YECLLDEAKQLLVNLCSLGVL 717
>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 448
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E +L + + G ++N ++ A + G+ E A++ Y M P T
Sbjct: 157 GNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTY 216
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++S Y G ++E+ FQ++ G +V+ Y L++ K+ RW A LLDEMH
Sbjct: 217 TALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMHR 276
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL-----WC 176
+ + VT + W+ + VF+++ G Y L+ A WC
Sbjct: 277 DNCKP-NTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWC 335
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
RA + LDE +G P++ +N ++
Sbjct: 336 -----RALQALDEMQGQGHRPDVGVYNVVI 360
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 85/198 (42%), Gaps = 1/198 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G N ++N +I+ + G ++EA++ +E P RT +LS +G + +
Sbjct: 138 GCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHA 197
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
++ + + G P+ Y L++ Y K+ + ++A + +M R + +T +
Sbjct: 198 LRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDM-VRRGCERNVITYSSLIS 256
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ WQ+ + D+++ + +NALL A G + A V ++ G P
Sbjct: 257 ACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKP 316
Query: 198 ELFRHNKLVWSVDVHRMW 215
+ + L+ + D W
Sbjct: 317 DAVSYAILISAFDRGNQW 334
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/192 (17%), Positives = 82/192 (42%), Gaps = 1/192 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +I + +A++ EM N T A+++V A ++ + + + ++
Sbjct: 75 TYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQL 134
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G P+++ Y +L+ ++ K W +A +LD + ++ + T I +
Sbjct: 135 LREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALE-DQGTKPEVRTYNTILSACNRSGQ 193
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ V++++ +G Y AL+ A G E A R+ + +RG + ++
Sbjct: 194 PEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSS 253
Query: 205 LVWSVDVHRMWE 216
L+ + + W+
Sbjct: 254 LISACEKAGRWQ 265
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 44/97 (45%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M N+ +FNA++ A QGG+++ A + +M C P+ + ++S +
Sbjct: 270 LLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFD 329
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
+ + E++ G P V Y +++ +S
Sbjct: 330 RGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALTRS 366
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 99/240 (41%), Gaps = 36/240 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K ++ M G+ + ++N++I + G EEA+K +M C PN T
Sbjct: 322 GHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTY 381
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSV---------MC----------------- 95
A++S C VDE+ E + + S GILP V +C
Sbjct: 382 NAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKG 441
Query: 96 ---------YCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
Y ML+ S + ++A LL EM N + + +I G F +
Sbjct: 442 KGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDG-FCKNKRIE 500
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
E +FD++ +G YN L++ L E AA+++D+ GL P+ F +N L+
Sbjct: 501 EAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLL 560
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 89/201 (44%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E I ++ G+ + +FN++I+ + A+ + EM+ C P+E T ++
Sbjct: 396 EATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLI 455
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C + ++E+ +E++ +G +V+ Y L+ + K+ R ++A + DEM +S
Sbjct: 456 DSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVS 515
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+I G + + D++ EG YN+LL G ++AA
Sbjct: 516 RDSVTYNTLIDG-LCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAAD 574
Query: 186 VLDEATKRGLFPELFRHNKLV 206
++ T G P++ + L+
Sbjct: 575 IVQTMTSSGCNPDIVTYATLI 595
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + I M GV+R+S ++N +I+ + R E+A + +M P++ T ++
Sbjct: 500 EEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSL 559
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
L+ +C G + ++ + Q + SSG P ++ Y L++ K+ R A LL
Sbjct: 560 LTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLL 611
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/200 (19%), Positives = 79/200 (39%), Gaps = 36/200 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M G++ + +F +++ + +GG + A++ +M + C + T+ +++ +C
Sbjct: 225 MMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFC 284
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +D++ QE S G P Y L+ K A ++D
Sbjct: 285 KQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVD------------ 332
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
M+ G D + + YN+L+ L LG E A ++LD+
Sbjct: 333 ---AMLLGGLDPD---------------------IYTYNSLISGLCKLGEIEEAVKILDQ 368
Query: 190 ATKRGLFPELFRHNKLVWSV 209
R P +N ++ S+
Sbjct: 369 MVSRDCSPNAVTYNAIISSL 388
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 85/206 (41%), Gaps = 1/206 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+K + M G + ++N +I++ + EEA+ EME C N
Sbjct: 429 HKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNT 488
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ +C ++E++E F E++ G+ + Y L+ KS R +DA L+D+M
Sbjct: 489 LIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEG 548
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ + T + F + + + + G + Y L+ L G + A
Sbjct: 549 LRP-DKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVA 607
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSV 209
+R+L +G+ +N ++ ++
Sbjct: 608 SRLLRSIQMKGMVLTPHAYNPVIQAL 633
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 79/182 (43%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N ++ + G + A++ M DP+ T +++S C G ++E+ + ++
Sbjct: 310 TYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQM 369
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S P+ + Y +++ K NR D+A + + + I +I+G SN
Sbjct: 370 VSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQG-LCLSSN 428
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ +F+++ +G YN L+++L E A +L E G + +N
Sbjct: 429 HKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNT 488
Query: 205 LV 206
L+
Sbjct: 489 LI 490
>gi|293336971|ref|NP_001167873.1| uncharacterized protein LOC100381578 [Zea mays]
gi|223944573|gb|ACN26370.1| unknown [Zea mays]
gi|414585240|tpg|DAA35811.1| TPA: hypothetical protein ZEAMMB73_503732 [Zea mays]
Length = 640
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 1/197 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE A+ RM +G+ ++ ++ V+ + G EEA+ + + N
Sbjct: 362 GREKEAMALFERMKATGIELDAVTYGVVVNCLCRFGNLEEALACFRSCVEKGVAVNAIFY 421
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ + G+VD++KE F+E+ + G +P CY +L+ K+ R DDA M
Sbjct: 422 TSLIDGFGKTGMVDQAKELFEEMVAKGFVPDSYCYNVLIDALVKAGRTDDACAFYKRMED 481
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G F + N + +++ +D + +G + AL L G
Sbjct: 482 DGCDQTVYTYTILIDGLFKEHKNEEALKF-WDSMIDKGITPTAAAFRALSNGLCLSGKFS 540
Query: 182 RAARVLDEATKRGLFPE 198
RA R+LDE G+ PE
Sbjct: 541 RAWRILDELAPMGVIPE 557
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ +E ++ +M E G + ++N V++ + GR EEA+ + EME++ C PN R+
Sbjct: 94 GMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSH 153
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C +D++ + F E+++ I P Y +L+ AK+ + ++AY L M
Sbjct: 154 NTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLD 213
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I+ +I G + + +E +F + +G +N L++A G +
Sbjct: 214 SGITPSAVTYNVVIHGMCLAYTLDEALE-LFKSMRSKGCRPSRFTFNILIDAHCKRGKMD 272
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+L T G P++ ++ L+
Sbjct: 273 EAFRLLKRMTDDGHVPDVVTYSTLI 297
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + RM +SG+ ++ ++N VI +EA++ + M C P+ T
Sbjct: 199 GKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTF 258
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G +DE+ + + G +P V+ Y L++ R DDA LL++M
Sbjct: 259 NILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVK 318
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G + V D + G + YN L+ G E
Sbjct: 319 RQCKPTVVTQNTLIHG-LCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTE 377
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA +L + RGL P + + LV
Sbjct: 378 RARELLSDMVARGLAPNVVTYTALV 402
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M G+A N ++ A++ + R EA + +M+ C PN T
Sbjct: 374 GQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTY 433
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
A++ +C AG VD + F E+ +GI P + Y L A KS R A +L E
Sbjct: 434 TALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILRE 490
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + +L M SG + + ++N ++ + G+ E A + +M PN T
Sbjct: 339 GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTY 398
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++S C A + E+ F ++KSSG P++ Y L+ + + + D L EM
Sbjct: 399 TALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVC 458
Query: 122 NRISNIHQVTGQM 134
IS H V G +
Sbjct: 459 AGISPDHVVYGTL 471
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 89/210 (42%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + ++ SGV ++ ++ ++I F++A + + +M + C P+ T
Sbjct: 24 GKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTY 83
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
++ C G+++E+ + +++ G +P V+ Y ++ KS R ++A L +EM
Sbjct: 84 NVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMER 143
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
NR S+ + G + + D VF ++ Y L++ L
Sbjct: 144 LGCTPNRRSHNTIILGLCQQSKIDQACQ------VFHEMEARDIPPDSWSYGILIDGLAK 197
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G A ++ G+ P +N ++
Sbjct: 198 AGKLNEAYKLFRRMLDSGITPSAVTYNVVI 227
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 3/165 (1%)
Query: 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
N +I + GR +EA + M P+ T ++ +C AG + ++E ++ +
Sbjct: 329 NTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVA 388
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIHQVTGQMIKGEFDDESNW 145
G+ P+V+ Y L++ K+NR +A G+ +M ++ + N+ T ++ F
Sbjct: 389 RGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILG--FCSAGQV 446
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+F ++ C G Y L L G RA +L E
Sbjct: 447 DGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREG 491
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
AG ++++++ FQ++ SG+ PS + Y L+ +N +DDA L +M+ R V
Sbjct: 23 AGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMN-RRGCPPSPV 81
Query: 131 TGQMIKGEFDDESNWQMVEYVFD---KLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
T +I D M+E D K+ +G+ + YN +++ L G E A +
Sbjct: 82 TYNVI---IDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLF 138
Query: 188 DEATKRGLFPELFRHNKLVWSV 209
+E + G P HN ++ +
Sbjct: 139 NEMERLGCTPNRRSHNTIILGL 160
>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
Length = 484
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 1/218 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++GV N ++N+++ + G+ +EAI +M +P+ T +++ C
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + +GLLD M N I H
Sbjct: 316 KNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 375
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I + + VF K+ +G Y ++ L G E A R ++
Sbjct: 376 VFSILICA-YAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQ 434
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227
L P +N L+ S+ + W+ + W+
Sbjct: 435 MIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYFLKCWI 472
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 95/199 (47%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNERTLEAVLSV 67
+L RM++ G N S+N +++ R +EA++ M + C P+ + V++
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ G +D++ + E+ GILP+V+ Y ++A K+ D A +L M N +
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ ++ G + + ++ K++ +G + YN+L++ L G A ++
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFL-KKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327
Query: 188 DEATKRGLFPELFRHNKLV 206
D TKRGL PE+ + L+
Sbjct: 328 DSMTKRGLKPEITTYGTLL 346
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 1/173 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV + ++N++++ + GR EA K + M K P T
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P+ + +L+ YAK + D A + +M
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ N VT + G + F+++ E G YN+L+ +L
Sbjct: 403 QGL-NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454
>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
Length = 700
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 111/267 (41%), Gaps = 36/267 (13%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M E G+ N +N+++ G ++A++ + +M+ P+ T ++++++
Sbjct: 373 IYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFS 432
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G V E++ E+ +G P++ L+ Y K+ R DD + + I+ +
Sbjct: 433 CCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVNTFNRIFELVITPDDR 492
Query: 130 VTG--------------------------------QMIKGEFDDESNWQM-VEYVFDKLN 156
G +++ E D E N++ +FD ++
Sbjct: 493 FCGCLLNVMTQTPNEELSKLVKCAERANPKLGYVVKLLVEEQDSEGNFKNEATDLFDSIS 552
Query: 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E + + N L++ L + ERA +LD ++ + WS+++ +
Sbjct: 553 TE---VKKAYCNCLIDLCIKLNMLERACELLDLGLTLEIYTNIMSRTSTQWSLNLKSLSP 609
Query: 217 GGAYTAISVWLNKMYEMFMMGEDLPQL 243
G A TA+ +W+N + ++ GE LP L
Sbjct: 610 GAAMTALHIWMNDLSKVLEAGEQLPPL 636
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 79/185 (42%), Gaps = 1/185 (0%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
++ +F+ +I ++ G F+ + Y EM+ + PN +L A + K+ +
Sbjct: 280 DATAFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFY 339
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
Q+I +G+ PS + Y LL Y ++ +DA+ + EM + ++ V I D
Sbjct: 340 QDIIDNGLSPSFVTYAALLHAYGRARYGEDAFKIYREMKEKGLG-LNVVLYNSILAMCAD 398
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+ +F+ + G +++++ C G A L+E + G P +F
Sbjct: 399 LGHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFI 458
Query: 202 HNKLV 206
L+
Sbjct: 459 LTSLI 463
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 58/104 (55%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
++G++ + ++ A++ A+ + E+A K Y EM++ N ++L++ G VD
Sbjct: 344 DNGLSPSFVTYAALLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVD 403
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ E F+++KSSGI P + ++ +++ + +A L+EM
Sbjct: 404 KAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEM 447
>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
Length = 789
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +L+ M+ESGV ++ +N +I+ F G EA +E+ + C PN +T
Sbjct: 349 AGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKT 408
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S C GL +++E F E++ G PS + + L+ K+ + + A+ L +M
Sbjct: 409 YSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKME 468
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD------------KLNCEGYGLGMRFYN 168
R ++ Q D S +MVE + D +L G G+ YN
Sbjct: 469 IGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYN 528
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L+ LG A ++ E +GL P+ + L+
Sbjct: 529 ILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLI 566
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 12/234 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + M + + ++N +++ Q A+ Y M K+ C PN T
Sbjct: 140 GLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATF 199
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C +G V ++ F E+ GILP YC++++ +S R DDAY L D+M
Sbjct: 200 SILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKD 259
Query: 122 NRISNIHQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + ++ G D + +F+K +GY L +R Y+ L+ L+
Sbjct: 260 SGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEK---DGYVLDVRGYSCLIRGLF---- 312
Query: 180 RERAARVLD-EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
RA R D + R + + + + ++++ + + E G LN+M E
Sbjct: 313 --RAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTE 364
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 48/169 (28%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-------- 53
GL ++ Q I + M + G ++ +FN++I+ + G+ E+A + +ME R
Sbjct: 420 GLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRL 479
Query: 54 --------------------CD--------------------PNERTLEAVLSVYCFAGL 73
CD P T +++ +C G
Sbjct: 480 SQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGN 539
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+ + + F+E++ G+ P + Y L+ + R +DAY + D+M N
Sbjct: 540 FNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKN 588
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 17/229 (7%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++L + G + ++ +I + R+E+ Y +M + P+ ++
Sbjct: 284 EAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMM 343
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
AG V ++ E E+ SG++P +CY +L+ + +A L E+ +
Sbjct: 344 KGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCF 403
Query: 126 NIHQVTGQMIKGEFDD--ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +I G + + Q + +KL C + +N+L++ L G E+
Sbjct: 404 PNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVT---FNSLIDGLCKTGQLEK- 459
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
A +L + G P LF R+ +G ++ S L KM E
Sbjct: 460 AHLLFYKMEIGRNPSLFL-----------RLSQGPSHVLDSASLQKMVE 497
>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Brachypodium distachyon]
Length = 570
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 97/208 (46%), Gaps = 2/208 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
++M + GV R++ + NA+++ + + A + E+ V P+E + ++ +C
Sbjct: 218 FNKMDQFGVVRDTKAMNALLDTLCKEKSVKRARGVFQELRGV-VPPDESSFNTLVHGWCQ 276
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
A +++E+++ +E++ G PSV+ Y L+ Y + Y +L+EM ++ + +
Sbjct: 277 ARMLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEM-CSKGCRPNVI 335
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
T ++ Q VFDK+ +G FYN+++ L G E A V DE
Sbjct: 336 TYTIVMHALGKAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEM 395
Query: 191 TKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+ G+ P + N ++ + H E
Sbjct: 396 CRTGIPPTVAIFNTMISAACDHSQAENA 423
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 1/170 (0%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ E + + M E G + + ++ ++IEA+ F+ EM C PN T
Sbjct: 279 MLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYT 338
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ AG E+ + F ++K G +P Y ++ + ++ R +DA + DEM
Sbjct: 339 IVMHALGKAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCRT 398
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
I + MI D S + + K+ + ++ Y LL+
Sbjct: 399 GIPPTVAIFNTMISAAC-DHSQAENALKILVKMEEQSCKPDIKTYTPLLK 447
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ ++ M +G+ FN +I A + E A+K V+ME+ C P+ +T
Sbjct: 382 AGRLEDANSVFDEMCRTGIPPTVAIFNTMISAACDHSQAENALKILVKMEEQSCKPDIKT 441
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
+L + C K Q+ + ILP ++C+
Sbjct: 442 YTPLLKLCC--------KRQWMK-----ILPFLICH 464
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ L M E+G+ N+ ++ A I + + F A K EM + PN+ ++
Sbjct: 505 EARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLI 564
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ YC V E+ ++ + GIL Y +L+ K+++ DDA + EM I+
Sbjct: 565 NEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIA 624
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G +I G F N Q +FD++ EG + YN LL G E+A
Sbjct: 625 PDVFSYGVLING-FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+LDE + +GL P + ++
Sbjct: 684 LLDEMSVKGLHPNAVTYCTII 704
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%)
Query: 2 GLYK-----ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GL+K + + I M G+A + S+ +I F + G ++A + EM + P
Sbjct: 601 GLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP 660
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
N +L +C +G ++++KE E+ G+ P+ + YC ++ Y KS +A+ L
Sbjct: 661 NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLF 720
Query: 117 DEMHTNRISNIHQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
DEM + V ++ G +D + +F N +G +NAL+ +
Sbjct: 721 DEMKLKGLVPDSFVYTTLVDGCCRLND---VERAITIFGT-NKKGCASSTAPFNALINWV 776
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234
+ G E VL+ G F + N + +++ + + + G A ++M
Sbjct: 777 FKFGKTELKTEVLNRLMD-GSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNAN 835
Query: 235 MM 236
+M
Sbjct: 836 LM 837
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 10/221 (4%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYV-EMEKVRCDPNERTLEA 63
++ +++L M GV+ ++ +++ +I+ +G R +A K V EM + +
Sbjct: 294 EDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG-RNADAAKGLVHEMVSHGINIKPYMYDC 352
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+ V G+++++K F + +SG++P Y L+ Y + Y LL EM
Sbjct: 353 CICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRN 412
Query: 124 ISNIHQVTGQMIKG---EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I G ++KG D + + +V+ ++ G + Y L++
Sbjct: 413 IVISPYTYGTVVKGMCSSGDLDGAYNIVK----EMIASGCRPNVVIYTTLIKTFLQNSRF 468
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVD-VHRMWEGGAY 220
A RVL E ++G+ P++F +N L+ + RM E ++
Sbjct: 469 GDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSF 509
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 5/176 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ ++ +A+ M SG+ + ++ ++IE + + + + VEM+K + T
Sbjct: 361 GVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTY 420
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ C +G +D + +E+ +SG P+V+ Y L+ + +++R+ DA +L EM
Sbjct: 421 GTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKE 480
Query: 122 NRIS-NIHQVTGQMI---KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
I+ +I +I K + DE+ +VE V + L + G F + +EA
Sbjct: 481 QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA-FISGYIEA 535
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD----PNERTLEAVLSVYCF 70
++ G A ++ FNA+I + G+ E + + D PN+ T ++ C
Sbjct: 758 NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G ++ +KE F +++++ ++P+V+ Y LL Y K R + + + DE I H +
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIM 877
Query: 131 TGQMIKGEFDDESNWQ---MVEYVFDKLNC-EGYGLGMRFYNALLEALWCLGLRERAARV 186
+I + + +V+ +F K +G L + ALL +G E A +V
Sbjct: 878 YSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 937
Query: 187 LDEATKRGLFPE 198
++ + P+
Sbjct: 938 MENMVRLQYIPD 949
>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Vitis vinifera]
Length = 798
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 110/234 (47%), Gaps = 46/234 (19%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G + ++N+++ Q F A+ Y +M K+ +PN T +L+ C G
Sbjct: 156 KMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNG 215
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRISNI 127
D++ + F E+ GI P+ M Y ++L+ ++ R DD + LL+ M + I+
Sbjct: 216 KTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCN 275
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL-----------WC 176
+ G G+ D+ + +++ +F+K EGY LG++ Y++L++ L WC
Sbjct: 276 ALLDGFCKLGQIDEA--FALLQ-LFEK---EGYVLGIKGYSSLIDGLFRAKRYDEVQEWC 329
Query: 177 ------------------------LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G+ + A +L++ T+RGL P+ + +N L+
Sbjct: 330 RKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALI 383
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 90/197 (45%), Gaps = 23/197 (11%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M++ G++ ++ +NA+I+ F G ++A +E+ K C P T ++ C
Sbjct: 363 MLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMC 422
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL+DE+++ F ++++ G PS+M + L+ K+ ++A L +M + ++
Sbjct: 423 RNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFL 482
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
Q D S MVE + CE GL +A ++L +
Sbjct: 483 RLSQGADRVMDTASLQTMVERL-----CES------------------GLILKAYKLLMQ 519
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P++ +N L+
Sbjct: 520 LADSGVVPDIMTYNVLI 536
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 97/242 (40%), Gaps = 57/242 (23%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP---- 56
GL E + I ++M G + + +FNA+I+ + G EEA + +ME + +P
Sbjct: 424 NGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKME-IGKNPSLFL 482
Query: 57 ----------NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
+ +L+ ++ C +GL+ ++ + ++ SG++P +M Y +L+ + K+
Sbjct: 483 RLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKA 542
Query: 107 NRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF 166
+ A+ L E+ +KG D
Sbjct: 543 KNINGAFKLFRELQ--------------LKGHSPDSVT---------------------- 566
Query: 167 YNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV-WSVDVHRMWEGGAYTAISV 225
Y L++ + E A RVLD+ K G P + L+ WS +G A S+
Sbjct: 567 YGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCR-----KGKLSVAFSL 621
Query: 226 WL 227
WL
Sbjct: 622 WL 623
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 11/187 (5%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+ N VI+ + F+ K E++ T +++ Y +G+ +++ E F ++
Sbjct: 98 THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKM 157
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGEF 139
K G P V Y +L V + + A + ++M + NR + + + G G+
Sbjct: 158 KDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKT 217
Query: 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
DD +FD++ +G Y +L L + R+L+ G P+
Sbjct: 218 DDALK------MFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDS 271
Query: 200 FRHNKLV 206
N L+
Sbjct: 272 ITCNALL 278
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 12/204 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L + G ++++I+ + R++E + +M K +P+
Sbjct: 285 GQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLY 344
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G+VD + ++ G+ P CY L+ + D A L E+
Sbjct: 345 TILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISK 404
Query: 122 N-----RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N + + G G D+ +F+++ G + +NAL++ L
Sbjct: 405 NDCFPTSCTYTILICGMCRNGLLDE------ARQIFNQMENLGCSPSIMTFNALIDGLCK 458
Query: 177 LGLRERAARVLDEATKRGLFPELF 200
G E AR L + G P LF
Sbjct: 459 AGELEE-ARHLFYKMEIGKNPSLF 481
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + M+ GV N ++N++I G+ EA +M PN T A+L+ +C
Sbjct: 258 VFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFC 317
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+V ++ E F ++ GI P+V Y +L+ Y K +DA+ L M +
Sbjct: 318 KNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVS 377
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G + + + + +++ + + YN L+++L G ++A R+LDE
Sbjct: 378 TYNCLIAG-LCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDE 436
Query: 190 ATKRGLFPELFRHNKLV 206
++GL P +N ++
Sbjct: 437 MCRKGLKPSQLTYNTMI 453
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 4/200 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD---PNERTLEAVLS 66
I+ M GV+ N ++N +I+ + + G+ + KA ++++R D PNE T ++
Sbjct: 185 IIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILID 244
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+C V + + F E+ G+ P+V+ Y L+ + + ++A L D+M N
Sbjct: 245 GFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQM-VNSCLK 303
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ +T + F + +FD + +G + YN L++A E A +
Sbjct: 304 PNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFAL 363
Query: 187 LDEATKRGLFPELFRHNKLV 206
+G+ P++ +N L+
Sbjct: 364 YRIMLGKGVCPDVSTYNCLI 383
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 57/110 (51%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++S M + + ++N +I++ G ++A++ EM + P++ T ++ YC
Sbjct: 398 LVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYC 457
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G + + +++ G L +V Y +L+ + K ++ +DA GLL+EM
Sbjct: 458 KEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEM 507
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ +L M G+ + ++N +I+ + + G A+ +MEKV N T
Sbjct: 425 GEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATY 484
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
++ +C ++++ E+ G++P+ M Y
Sbjct: 485 NVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTY 519
>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
nagariensis]
gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
nagariensis]
Length = 1001
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 109/229 (47%), Gaps = 9/229 (3%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E A+ R+ G NS ++NA+I A+ + + +A++ Y EM + D + T ++
Sbjct: 266 REALAVYQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSL 325
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+S AG + + F E++ +P+ + Y L+ A+ +W+ A + ++M+ +
Sbjct: 326 ISACEKAGQWETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGC 385
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL---RE 181
+ VT + ++ WQ F K+ +G YNA+++ LW G+ +
Sbjct: 386 TP-DVVTYTALISAYERGGQWQKALQAFHKMCVQGCKPDAIVYNAIIDTLWETGIIWAQG 444
Query: 182 RAARVLDEATKRGLF---PELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227
+A ++ A ++G F P + R ++ V++H M G A + WL
Sbjct: 445 KALQLFMTAVQQGHFHQEPLVRRPGRV--EVNLHAMTAGVAMVCLYCWL 491
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 14/228 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M GV ++N +I A + EA+ Y + PN T A++S Y
Sbjct: 236 VLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGFTPNSTTYNALISAYG 295
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR-ISNIH 128
+ ++ E +QE+ + SV+ Y L++ K+ +W+ A + +EM ++ + N
Sbjct: 296 KTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALRIFNEMQQDKCVPNT- 354
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT + W+ VF+++N G + Y AL+ A G ++A +
Sbjct: 355 -VTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAYERGGQWQKALQAFH 413
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLN-KMYEMFM 235
+ +G P+ +N + + +WE G +W K ++FM
Sbjct: 414 KMCVQGCKPDAIVYNAI-----IDTLWETGI-----IWAQGKALQLFM 451
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 36/242 (14%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M + RN ++ A++ + G+ A+ Y M V C PN T ++ VY
Sbjct: 166 LMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYNTLVDVYG 225
Query: 70 FAG--------------------------------LVDESKEQ---FQEIKSSGILPSVM 94
G + ++ +E +Q + S G P+
Sbjct: 226 KLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGFTPNST 285
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
Y L++ Y K+ + A + EM + +T + + W+ +F++
Sbjct: 286 TYNALISAYGKTTQLGKALEVYQEMLRQNMDR-SVITYSSLISACEKAGQWETALRIFNE 344
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214
+ + YN+L+ A G E+AA V ++ G P++ + L+ + +
Sbjct: 345 MQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAYERGGQ 404
Query: 215 WE 216
W+
Sbjct: 405 WQ 406
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 83/193 (43%), Gaps = 3/193 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+ A I G + A++ EM + N T A+++V G + + + + +
Sbjct: 146 SYTATISLCIHGQDVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSM 205
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG-EFDDES 143
++ +P+V+ Y L+ VY K +W+ A +LD M + + + +I ++
Sbjct: 206 RAVNCMPNVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQP 265
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+ V+ +L +G+ YNAL+ A +A V E ++ + + ++
Sbjct: 266 REALA--VYQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYS 323
Query: 204 KLVWSVDVHRMWE 216
L+ + + WE
Sbjct: 324 SLISACEKAGQWE 336
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 41/74 (55%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +++ + +M+ G + ++ A+I A+ +GG++++A++A+ +M C P+
Sbjct: 367 GGQWEKAAEVFEQMNAHGCTPDVVTYTALISAYERGGQWQKALQAFHKMCVQGCKPDAIV 426
Query: 61 LEAVLSVYCFAGLV 74
A++ G++
Sbjct: 427 YNAIIDTLWETGII 440
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 93/199 (46%), Gaps = 11/199 (5%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + + +M + G ++ ++N +I+ + G +EA+K M C P E T +
Sbjct: 242 KEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGIL 301
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----- 119
++ C AG ++ ++E F+ + +SG P+ + Y L+ +AKS R +A L DEM
Sbjct: 302 VNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGY 361
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ I++ + G G F+ + F+++ G + Y +++ L +G
Sbjct: 362 RPDVITHTVMIDGLCKSGNFEQAAKS------FEEMMRGGCKPNVVTYTTIIQGLSKIGR 415
Query: 180 RERAARVLDEATKRGLFPE 198
A R++ G FP+
Sbjct: 416 VANAFRIMKGMIAHGCFPD 434
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 107/278 (38%), Gaps = 46/278 (16%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y +C AI M ++G+A N+ SFN +I +F + R ++A+ + M++ RC P+ T
Sbjct: 135 YSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLI 194
Query: 64 VLSVYCFAGL------------------------------------VDESKEQFQEIKSS 87
++ C AG+ V E++E F +++
Sbjct: 195 LVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKC 254
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
G P + Y ++ AK+ +A +LD M +VT ++ +
Sbjct: 255 GFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPT-EVTYGILVNSLCKAGTLER 313
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW 207
E +F + G+ Y +L+ G + A + DE + G P++ H ++
Sbjct: 314 AEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMID 373
Query: 208 SVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLAT 245
+ +E A K +E M G P + T
Sbjct: 374 GLCKSGNFEQAA---------KSFEEMMRGGCKPNVVT 402
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE ++ M E+G + + +I+ + G FE+A K++ EM + C PN T
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTY 403
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G V + + + + G P + Y LL + K R D+A LLDE+
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDK 463
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
S Q+ ++ G D S + ++ +F++ L +++ L G +
Sbjct: 464 CSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLD 523
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+ G P+ +N L+
Sbjct: 524 EACRIFQRMVSEGCKPDATTYNILI 548
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M G A ++ ++ +I + + E+A K + EM P T A++
Sbjct: 634 SLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQAL 693
Query: 69 CFAGLVDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C AG VDE+ +F+ + + G ++ SVM Y L+ + K+ + D A L ++M
Sbjct: 694 CHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDM 745
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/238 (19%), Positives = 92/238 (38%), Gaps = 11/238 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L + + G ++ ++ + + G + A+K E + + A+ +
Sbjct: 564 ALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGL 623
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C+ G VD + FQE+ G P YC ++ K + +DA DEM +
Sbjct: 624 CYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEM-IGKGQKPT 682
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG-MRFYNALLEALWCLGLRERAARVL 187
T + N + F+ + G +G + Y+AL+ +C L+ +
Sbjct: 683 VATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHG-FCKALK------V 735
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLAT 245
D A K LF ++ + +V +++G + + ++ + G P AT
Sbjct: 736 DAALK--LFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAAT 791
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/189 (19%), Positives = 76/189 (40%), Gaps = 13/189 (6%)
Query: 28 AVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA--GLVDESKEQFQEIK 85
++I + GR +EA + + M C P+ T +++ C + V+ + +++
Sbjct: 511 SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE 570
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRISNIHQVTGQMIKGEFD 140
G LP + Y L K D A +L+E + + ++ TG +G+ D
Sbjct: 571 KVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVD 630
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
+ +F ++ +G Y ++ L + E A + DE +G P +
Sbjct: 631 RAVS------LFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVA 684
Query: 201 RHNKLVWSV 209
+ LV ++
Sbjct: 685 TYTALVQAL 693
>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 493
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
ILS M G+ + +F+A+I+ F + G+ EA K Y EM + DPN T ++++ C
Sbjct: 235 ILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLC 294
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL+DE+K+ + S G P+ + Y L+ Y KS R DDA +L M + +
Sbjct: 295 IHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTF 354
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ +G + + E V ++ G + +N LL+ L G E+A L++
Sbjct: 355 TYNTLYQG-YCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLED 413
Query: 190 ATKRGLFPELFRHNKLV 206
K + +N ++
Sbjct: 414 LQKSETVVGIITYNIII 430
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 97/237 (40%), Gaps = 34/237 (14%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y+ ++ + G++ + SF+ +I+ F + R A+ +M K+ +P+ T +
Sbjct: 89 YEAVISLFRHIEILGISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGS 148
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---- 119
+++ +C + E+ +I G P+V+ Y ++ ++ + D A +L+ M
Sbjct: 149 LVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMG 208
Query: 120 ----------------HTNR-------ISN-----IHQ--VTGQMIKGEFDDESNWQMVE 149
H+ + +S+ IH +T + F E +
Sbjct: 209 IRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAK 268
Query: 150 YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+D++ + YN+L+ L GL + A +VL+ +G FP +N LV
Sbjct: 269 KQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLV 325
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + +L+ M G N+ ++N ++ + + R ++A+K M D + T
Sbjct: 297 GLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTY 356
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ YC AG + +++ + S G+LP + + MLL + + + A L+++
Sbjct: 357 NTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQ 415
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 86/202 (42%), Gaps = 11/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M + G+ + ++N++I G++ + + +M ++ P+ T A++ V+
Sbjct: 200 VLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFG 259
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
G + E+K+Q+ E+ + P+++ Y L+ D+A +L+ M N +
Sbjct: 260 KEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAV 319
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ V G DD V ++ +G YN L + G A
Sbjct: 320 TYNTLVNGYCKSKRVDDAMKILCV------MSHDGVDGDTFTYNTLYQGYCQAGQFNAAE 373
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+VL G+ P+++ N L+
Sbjct: 374 KVLARMVSCGVLPDIYTFNMLL 395
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 55/111 (49%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ IL MS GV ++ ++N + + + Q G+F A K M P+ T +L
Sbjct: 336 DAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLL 395
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
C G ++++ + ++++ S + ++ Y +++ K+N+ +DA+ L
Sbjct: 396 DGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLF 446
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + +L+RM GV + +FN +++ + G+ E+A+ +++K T
Sbjct: 366 AGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIIT 425
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ C A V+++ F + G+ P V+ Y ++ + W +A+ L +M
Sbjct: 426 YNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLWLEAHELYRKM 484
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/207 (16%), Positives = 88/207 (42%), Gaps = 9/207 (4%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + + M+ES + F+ ++ A + ++E I + +E + + +
Sbjct: 54 FNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFST 113
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ +C + + ++ G PS++ + L+ + NR +A L+D++
Sbjct: 114 LIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQI---- 169
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR----FYNALLEALWCLGL 179
+ ++ + D + V+ D LN +G+R YN+L+ L+ G
Sbjct: 170 VGLGYEPNVVIYNTIIDSLCENRQVDTALDVLN-HMEKMGIRPDVITYNSLITRLFHSGK 228
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+AR+L + + G+ P++ + ++
Sbjct: 229 WGVSARILSDMMRMGIHPDVITFSAMI 255
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G L++E + M +G + + ++NA+++ + + R +EA+K EME P+ T
Sbjct: 292 GSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVT 351
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++S Y G++DE+ E ++ G P V Y LL+ + ++ + + A + +EM
Sbjct: 352 YNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMR 411
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + T + + + + +FD++N G + +N LL G+
Sbjct: 412 -NAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMD 470
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ V E + G PE N L+
Sbjct: 471 SEVSGVFKEMKRAGFVPERETFNTLI 496
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 100/212 (47%), Gaps = 1/212 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE +L+ M +G + + ++N++I A+ + G +EA++ +M + P+ T +
Sbjct: 331 KEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTL 390
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
LS + AG V+ + F+E++++G P++ + + +Y ++ D + DE++ +
Sbjct: 391 LSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGL 450
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
S VT + F V VF ++ G+ +N L+ A G E+A
Sbjct: 451 SP-DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
V G+ P+L +N ++ ++ MWE
Sbjct: 510 TVYRRMLDAGVTPDLSTYNTVLAALARGGMWE 541
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 9/210 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + M +G ++FN +I A+ + G FE+A+ Y M P+ T
Sbjct: 468 GMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTY 527
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
VL+ G+ ++S++ E++ P+ + YC LL YA + L +E+++
Sbjct: 528 NTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYS 587
Query: 122 NRISNIHQVTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
I + ++ K + E+ E F +L G+ + N+++
Sbjct: 588 GVIEPRAVLLKTLVLVCSKCDLLPEA-----ERAFSELKERGFSPDITTLNSMVSIYGRR 642
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVW 207
+ +A VLD +RG P + +N L++
Sbjct: 643 QMVGKANEVLDYMKERGFTPSMATYNSLMY 672
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 93/198 (46%), Gaps = 2/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + + E G + + S+ ++I AF GR+ EA+ + +ME+ C P T +L+V+
Sbjct: 195 LFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFG 254
Query: 70 FAGLV-DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G ++ +++KS GI P Y L+ + + +A + +EM S+
Sbjct: 255 KMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSH-D 313
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+VT + + + V +++ G+ + YN+L+ A G+ + A + +
Sbjct: 314 KVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKN 373
Query: 189 EATKRGLFPELFRHNKLV 206
+ ++G P++F + L+
Sbjct: 374 QMAEKGTKPDVFTYTTLL 391
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 96/206 (46%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + +++ +M G+A ++ ++N +I ++G +EA + + EM+ ++ T
Sbjct: 257 GTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVT 316
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L VY + E+ + E++ +G PS++ Y L++ YA+ D+A L ++M
Sbjct: 317 YNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQM- 375
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + T + F+ + +F+++ G + +NA ++ G
Sbjct: 376 AEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKF 435
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
++ DE GL P++ N L+
Sbjct: 436 VDMMKIFDEINVCGLSPDIVTWNTLL 461
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 6/208 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD---PNE 58
G Y+E + +M E G ++N ++ F + G I + V EK++ D P+
Sbjct: 222 GRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLV--EKMKSDGIAPDA 279
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T +++ L E+ + F+E+K++G + Y LL VY KS+R +A +L+E
Sbjct: 280 YTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNE 339
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M N S +I D + +E + +++ +G + Y LL G
Sbjct: 340 MELNGFSPSIVTYNSLISAYARDGMLDEAME-LKNQMAEKGTKPDVFTYTTLLSGFERAG 398
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
E A + +E G P + N +
Sbjct: 399 KVESAMNIFEEMRNAGCKPNICTFNAFI 426
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + I M +G N +FNA I+ + G+F + +K + E+ P+ T
Sbjct: 397 AGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVT 456
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG----LL 116
+L+V+ G+ E F+E+K +G +P + L++ Y++ ++ A +L
Sbjct: 457 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRML 516
Query: 117 DEMHTNRISNIHQVTGQMIKG 137
D T +S + V + +G
Sbjct: 517 DAGVTPDLSTYNTVLAALARG 537
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ I S M +SG+ + ++N I ++ FEEAI M K C PN+ T ++
Sbjct: 716 RDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSI 775
Query: 65 LSVYCFAGLVDESK 78
+ YC DE+K
Sbjct: 776 VDGYCKLNRKDEAK 789
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 53/110 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G + ++N+++ + F ++ + E+ P+ + V+ YC
Sbjct: 651 VLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYC 710
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ ++ F E++ SGI+P V+ Y + YA + +++A G++ M
Sbjct: 711 RNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYM 760
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 73/179 (40%), Gaps = 38/179 (21%)
Query: 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM 98
EA +A+ E+++ P+ TL +++S+Y +V ++ E +K G PS+ Y
Sbjct: 610 LPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNS 669
Query: 99 LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158
L+ ++++S + + +L E+ + KG D ++ V Y
Sbjct: 670 LMYMHSRSADFGKSEEILREI--------------LAKGIKPDIISYNTVIYA------- 708
Query: 159 GYGLGMRFYNALLEALWCLGLRER-AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+C R R A+R+ E G+ P++ +N + S M+E
Sbjct: 709 ----------------YCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFE 751
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 52/116 (44%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + + IL + G+ + S+N VI A+ + R +A + + EM P+ T
Sbjct: 680 FGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNT 739
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ Y + +E+ + + G P+ Y ++ Y K NR D+A ++++
Sbjct: 740 FIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDL 795
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 93/199 (46%), Gaps = 11/199 (5%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + + +M + G ++ ++N +I+ + G +EA+K M C P E T +
Sbjct: 242 KEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGIL 301
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----- 119
++ C AG ++ ++E F+ + +SG P+ + Y L+ +AKS R +A L DEM
Sbjct: 302 VNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGY 361
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ I++ + G G F+ + F+++ G + Y +++ L +G
Sbjct: 362 RPDVITHTVMIDGLCKSGNFEQAAKS------FEEMMRGGCKPNVVTYTTIIQGLSKIGR 415
Query: 180 RERAARVLDEATKRGLFPE 198
A R++ G FP+
Sbjct: 416 VANAFRIMKGMIAHGCFPD 434
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 107/278 (38%), Gaps = 46/278 (16%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y +C AI M ++G+A N+ SFN +I +F + R ++A+ + M++ RC P+ T
Sbjct: 135 YSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLI 194
Query: 64 VLSVYCFAGL------------------------------------VDESKEQFQEIKSS 87
++ C AG+ V E++E F +++
Sbjct: 195 LVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKC 254
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
G P + Y ++ AK+ +A +LD M +VT ++ +
Sbjct: 255 GFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPT-EVTYGILVNSLCKAGTLER 313
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW 207
E +F + G+ Y +L+ G + A + DE + G P++ H ++
Sbjct: 314 AEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMID 373
Query: 208 SVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLAT 245
+ +E A K +E M G P + T
Sbjct: 374 GLCKSGNFEQAA---------KSFEEMMRGGCKPNVVT 402
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE ++ M E+G + + +I+ + G FE+A K++ EM + C PN T
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTY 403
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G V + + + + G P + Y LL + K R D+A LLDE+
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDK 463
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
S Q+ ++KG D S ++ +F++ L +++ L G +
Sbjct: 464 CSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLD 523
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+ G P+ +N L+
Sbjct: 524 EACRIFQRMVSEGCKPDATTYNILI 548
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M G A ++ ++ +I +G + E+A K + EM P T A++
Sbjct: 634 SLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQAL 693
Query: 69 CFAGLVDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C AG VDE+ +F+ + + G ++ SVM Y L+ + K+ + D A L ++M
Sbjct: 694 CHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDM 745
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 26/223 (11%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I+ M G +S ++ +++ F + GR +EA + E++K PN + +++ C
Sbjct: 422 IMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLC 481
Query: 70 FAGLVDESKEQ-FQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
G V+ + + F++ K++ L +C C ++ K+ R D+A + M +
Sbjct: 482 DGGSVENTLDDLFEQSKAAAENLDPGLC-CSIIVGLCKTGRLDEACRIFQRMVSEGCKPD 540
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVF---DKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+I G N VE F L GY Y L L +G +RA
Sbjct: 541 ATTYNILINGLCRSRENR--VERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAV 598
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227
++L+EA+ RG W+ DV AYTA+ L
Sbjct: 599 KMLEEASSRG------------WNADVV------AYTALCTGL 623
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 14/205 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L + + + N ++++++ GG E + E K + + L
Sbjct: 449 GRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGL 508
Query: 62 EAVLSV-YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS--NRWDDAYGLLDE 118
+ V C G +DE+ FQ + S G P Y +L+ +S NR + A+ LL +
Sbjct: 509 CCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHD 568
Query: 119 MH-----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
+ + ++ G GE D + ++ + G+ + Y AL
Sbjct: 569 LEMVGYLPDAVTYTPLCIGLCKIGEVDRAVK------MLEEASSRGWNADVVAYTALCTG 622
Query: 174 LWCLGLRERAARVLDEATKRGLFPE 198
L G +RA + E ++G P+
Sbjct: 623 LCYQGQVDRAVSLFQEMVRQGGAPD 647
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/238 (19%), Positives = 91/238 (38%), Gaps = 11/238 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L + G ++ ++ + + G + A+K E + + A+ +
Sbjct: 564 ALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGL 623
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C+ G VD + FQE+ G P YC ++ K + +DA DEM +
Sbjct: 624 CYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEM-IGKGQKPT 682
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG-MRFYNALLEALWCLGLRERAARVL 187
T + N + F+ + G +G + Y+AL+ +C L+ +
Sbjct: 683 VATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHG-FCKALK------V 735
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLAT 245
D A K LF ++ + +V +++G + + ++ + G P AT
Sbjct: 736 DAALK--LFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAAT 791
>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
gi|223948163|gb|ACN28165.1| unknown [Zea mays]
gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
Length = 786
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 34/239 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E A + G A ++NA+++ F + G + EA++ EME+ C P+ T
Sbjct: 259 GLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTY 318
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
+ Y AG +E+ + S G+LP+ Y ++ Y + D+A L D+M
Sbjct: 319 NELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKK 378
Query: 121 TNRISNIH-------------------QVTGQMIK-GEFDDESNWQMVEYVFDKLNCEGY 160
T + N++ ++ G+M + G + W + V K E Y
Sbjct: 379 TGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDY 438
Query: 161 GL----GMR---------FYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
GMR YN L+ A G R A ++ +E T G P + +N L+
Sbjct: 439 VTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALL 497
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 2/204 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYV-EMEKVRCDPNER 59
G Y+ + + + GVA ++N V++ + + GR I A + EM +P+
Sbjct: 187 AGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGF 246
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T V++ C GLVDE+ F+++K+ G P V+ Y LL V+ K+ + +A +L EM
Sbjct: 247 TASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEM 306
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
N VT + G + ++ D + +G YN ++ A +G
Sbjct: 307 EQNGCQP-DAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGK 365
Query: 180 RERAARVLDEATKRGLFPELFRHN 203
+ A + D+ K G P + +N
Sbjct: 366 VDEALALFDQMKKTGFVPNVNTYN 389
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 2/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M GV + D++N +I A+ + G A K Y EM P T A+L+V
Sbjct: 442 VLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLS 501
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-TNRISNIH 128
G ++ ++++ G P+ Y +LL YAK + +E++ + +
Sbjct: 502 RQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSW 561
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ ++ F +E F ++ GY + +N++L G+ +A V D
Sbjct: 562 VILRTLVIANFKCR-RLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFD 620
Query: 189 EATKRGLFPELFRHNKLV 206
+ GL P+L +N L+
Sbjct: 621 SIKRSGLSPDLITYNSLM 638
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 1/171 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+ +M ++G N +++N V+ + RF ++ EM + C PN T
Sbjct: 364 GKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTW 423
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+V G+ D + ++S G+ S Y L+A Y + +A+ + +EM +
Sbjct: 424 NTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTS 483
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
+ ++ + +W + + K+ +G+ + Y+ LL+
Sbjct: 484 AGFTPCITTYNALLN-VLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQ 533
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 93/209 (44%), Gaps = 7/209 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD---PNE 58
G + Q+I+S+M G N S++ +++ + +GG A A +E E P+
Sbjct: 504 GDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNV--AGIAAIENEVYGSGAVFPSW 561
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
L ++ +D + FQE+K+ G P ++ + +L++YAK+ + A + D
Sbjct: 562 VILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDS 621
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC-EGYGLGMRFYNALLEALWCL 177
+ + +S ++ +W+ E + ++L C + + YN ++
Sbjct: 622 IKRSGLSPDLITYNSLMDMYAKCSESWE-AEKILNQLKCSQTMKPDVVSYNTVINGFCKQ 680
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
GL + A RVL E G+ P ++ LV
Sbjct: 681 GLVKEAQRVLSEMVADGMAPCAVTYHTLV 709
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 2/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+K+ + M++SG+ + ++N +I Q + EA+ + M+K P+ T +
Sbjct: 383 WKDAVCLFEEMADSGLP-DVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNS 441
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L YC G +DE+ + + E+ G P+V+ Y L+ Y +D+AY LLDEM N
Sbjct: 442 LLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNG 501
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+S +I G + + V+ + EG+ M YN+++ G+ A
Sbjct: 502 VSCNDYTYNVLINGICMVDRVCE-VDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSA 560
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
V + ++GL P + + +
Sbjct: 561 FTVYQQMREKGLPPNIITYTSFI 583
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ KE M + G+ ++ ++ +I+ F + G A++ Y EM P+ T
Sbjct: 661 MMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFT 720
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+ C +G +D +K+ +E++ + P+V Y ML+ Y + + +A+ L DEM
Sbjct: 721 ALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEM 777
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 87/235 (37%), Gaps = 34/235 (14%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L G ++N++I F + G A Y +M + PN T + +
Sbjct: 524 EVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFI 583
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL-----DEMH 120
YC G D + + +++ G+ P ++ Y L+ + + A LL D +
Sbjct: 584 DGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLA 643
Query: 121 TNRISNIHQVTG---------------QMIKG--------------EFDDESNWQMVEYV 151
N + +TG MIKG F + N +
Sbjct: 644 PNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALEL 703
Query: 152 FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ ++ +GY + AL L G + A ++L+E + + P +F +N L+
Sbjct: 704 YSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLI 758
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 11/221 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K+ A+ M G ++ F+A++ A + G E+A++ + EM DP++R
Sbjct: 170 GSSAKDALALFMEMRGRGYRVDAWMFDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRV 229
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G + +E+K G Y ++ V K+ R ++A + DEM
Sbjct: 230 YALAITALCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMR 289
Query: 121 -----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
+ I + G ++ E + N +F + +G Y L+
Sbjct: 290 DAGKKMDVIVATTLMRGYCLRQEVGNALN------LFKETLKDGIVPTKVMYGVLIRGCD 343
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+G+ ++A + + T +GL P F + ++ + R W+
Sbjct: 344 QVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWK 384
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/239 (17%), Positives = 83/239 (34%), Gaps = 51/239 (21%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G ++ +++ + GR EEA++ EM + ++ YC
Sbjct: 249 MLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYC 308
Query: 70 F-----------------------------------AGLVDESKEQFQEIKSSGILPSVM 94
G+ ++ E +++ G+LPS
Sbjct: 309 LRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTF 368
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY---- 150
++L RW DA L +EM + + ++ +++ +W +
Sbjct: 369 ELSLVLKGLLNDRRWKDAVCLFEEMADSGLPDVFT---------YNNLIHWHCQAHKLRE 419
Query: 151 ---VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+FD++ G + YN+LL G + A ++ E G P + + L+
Sbjct: 420 ALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLM 478
>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 114/246 (46%), Gaps = 46/246 (18%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ ++ +M + G + ++N+++ Q F A+ Y +M K+ +PN T
Sbjct: 144 SGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRAT 203
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L+ C G D++ + F E+ GI P+ M Y ++L+ ++ R DD + LL+ M
Sbjct: 204 FVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMK 263
Query: 121 T-----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL- 174
+ I+ + G G+ D+ + +++ +F+K EGY LG++ Y++L++ L
Sbjct: 264 VSGCCPDSITCNALLDGFCKLGQIDEA--FALLQ-LFEK---EGYVLGIKGYSSLIDGLF 317
Query: 175 ----------WC------------------------LGLRERAARVLDEATKRGLFPELF 200
WC +G+ + A +L++ T+RGL P+ +
Sbjct: 318 RAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTY 377
Query: 201 RHNKLV 206
+N L+
Sbjct: 378 CYNALI 383
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 35/219 (15%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M++ G++ ++ +NA+I+ F G ++A +E+ K C P T ++ C
Sbjct: 363 MLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMC 422
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL+DE+++ F ++++ G PS+M + L+ K+ ++A L +M + ++
Sbjct: 423 RNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFL 482
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
Q D + + V+ E A RVLD+
Sbjct: 483 RLSQGADRVMDTANGFHRVDR-----------------------------EEDAFRVLDQ 513
Query: 190 ATKRGLFPELFRHNKLV-WSVDVHRMWEGGAYTAISVWL 227
K G P + L+ WS +G A S+WL
Sbjct: 514 MVKNGCTPSSAVYKCLMTWSCR-----KGKLSVAFSLWL 547
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 11/187 (5%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+ N VI+ + F+ K E++ T +++ Y +G+ +++ E F ++
Sbjct: 98 THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKM 157
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGEF 139
K G P V Y +L V + + A + ++M + NR + + + G G+
Sbjct: 158 KDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKT 217
Query: 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
DD +FD++ +G Y +L L + R+L+ G P+
Sbjct: 218 DDALK------MFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDS 271
Query: 200 FRHNKLV 206
N L+
Sbjct: 272 ITCNALL 278
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 12/204 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L + G ++++I+ + R++E + +M K +P+
Sbjct: 285 GQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLY 344
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G+VD + ++ G+ P CY L+ + D A L E+
Sbjct: 345 TILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISK 404
Query: 122 N-----RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N + + G G D+ +F+++ G + +NAL++ L
Sbjct: 405 NDCFPTSCTYTILICGMCRNGLLDE------ARQIFNQMENLGCSPSIMTFNALIDGLCK 458
Query: 177 LGLRERAARVLDEATKRGLFPELF 200
G E AR L + G P LF
Sbjct: 459 AGELEE-ARHLFYKMEIGKNPSLF 481
>gi|297847648|ref|XP_002891705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337547|gb|EFH67964.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 823
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 108/213 (50%), Gaps = 16/213 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ E A ++RM+E + + +++ +I+ + + AIK + +MEK +C PN T
Sbjct: 533 SGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRDMEKNKCKPNVVT 592
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK-SNRWDDAYGLLDEM 119
++++ +C G ++E F+E++S ++P+V+ Y L+ +AK S+ + A + M
Sbjct: 593 YTSLINGFCCQGDFSLAEETFKEMQSRDLVPNVVTYTTLIRSFAKESSTLEKAVYYWELM 652
Query: 120 HTNR-ISN-----------IHQVTGQMIKGEFDDESNWQMVEY--VFDKLNCEGYGLGMR 165
TN+ + N + + +G+ + GE D ++ Q + F ++ +G+
Sbjct: 653 MTNKCVPNEVTFNCLLQGFVKKTSGRFL-GEPDGFNHGQSFLFFEFFHRMKSDGWSDHGA 711
Query: 166 FYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
YN++L L G+ + A + D K+G P+
Sbjct: 712 AYNSVLVCLCVHGMVKTACMLQDRMVKKGFSPD 744
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 84/194 (43%), Gaps = 5/194 (2%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ + + M E G ++ S +++ G+ EE K + C PN +
Sbjct: 187 EDARKVYDEMCERGGCVDNYSTCIMVKGMCSEGKVEEGRKLIEDRWGKGCVPNIVFYNTI 246
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ YC G ++ +K F+E+K G +P++ + ++ + K + + LL+E+ +
Sbjct: 247 IGGYCKLGDIENAKLVFKELKLKGFMPTLETFGTMINGFCKKGDFVASDRLLEEVKERGL 306
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYV--FDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+I ++ E + +C+ + YN L+ L G +E
Sbjct: 307 RVCVWFLNNIIDAKYRHGFKVDPAESIRWIVANDCKP---DIATYNILINRLCKEGKKEV 363
Query: 183 AARVLDEATKRGLF 196
AA +LDEA+K+GL
Sbjct: 364 AAGLLDEASKKGLI 377
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 31/196 (15%)
Query: 26 FNAVIEA-FRQGGRFE--EAIKAYVEMEKVRCDPNERTLEAVLSVYC-------FAGLVD 75
N +I+A +R G + + E+I+ V + C P+ T +++ C AGL+D
Sbjct: 313 LNNIIDAKYRHGFKVDPAESIRWIVAND---CKPDIATYNILINRLCKEGKKEVAAGLLD 369
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQV 130
E+ ++ G++ + + Y L+ Y KS +D A LL ++ + ++ +
Sbjct: 370 EASKK-------GLILTNLSYAPLIQAYCKSKEYDIASKLLLQLAERGCKPDIVTYGILI 422
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
G ++ G DD N ++ KL G YN L+ L G A + E
Sbjct: 423 HGLVVSGHMDDAVNMKV------KLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEM 476
Query: 191 TKRGLFPELFRHNKLV 206
R + P+ + + L+
Sbjct: 477 LDRSILPDAYVYATLI 492
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 3/181 (1%)
Query: 27 NAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
NA++ + R E+A K Y EM E+ C N T V + C G V+E ++ ++
Sbjct: 174 NALLSLVVKSRRLEDARKVYDEMCERGGCVDNYSTCIMVKGM-CSEGKVEEGRKLIEDRW 232
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
G +P+++ Y ++ Y K ++A + E+ + G MI G F + ++
Sbjct: 233 GKGCVPNIVFYNTIIGGYCKLGDIENAKLVFKELKLKGFMPTLETFGTMING-FCKKGDF 291
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+ + +++ G + + F N +++A + G + A + P++ +N L
Sbjct: 292 VASDRLLEEVKERGLRVCVWFLNNIIDAKYRHGFKVDPAESIRWIVANDCKPDIATYNIL 351
Query: 206 V 206
+
Sbjct: 352 I 352
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/239 (18%), Positives = 81/239 (33%), Gaps = 34/239 (14%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y +L +++E G + ++ +I G ++A+ V++ P+
Sbjct: 396 YDIASKLLLQLAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNM 455
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----------- 112
++S C G +K F E+ ILP Y L+ + +S +D+A
Sbjct: 456 LMSGLCKTGRFLPAKLLFSEMLDRSILPDAYVYATLIDGFIRSGDFDEARKVFTLSVEKG 515
Query: 113 -----------------YGLLDEMHT--NRISNIHQVTGQMIKGEFDD----ESNWQMVE 149
G+LDE NR++ H V + D + +
Sbjct: 516 VKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAI 575
Query: 150 YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
+F + + Y +L+ C G A E R L P + + L+ S
Sbjct: 576 KIFRDMEKNKCKPNVVTYTSLINGFCCQGDFSLAEETFKEMQSRDLVPNVVTYTTLIRS 634
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 104/249 (41%), Gaps = 36/249 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + A+ M E+GV + ++NAV+ A +GG +E++ K EME RC PNE +
Sbjct: 488 GSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSY 547
Query: 62 EAVLSVYC---------------FAGLVD--------------------ESKEQFQEIKS 86
++L Y ++G V+ E++ F E++
Sbjct: 548 SSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRR 607
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
GI P + +L++Y + A+ +L+ MH R + T + + N+Q
Sbjct: 608 RGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTP-SLTTYNSLMYMYSRSENFQ 666
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
E + ++ +G YN ++ A G + A+R+ E L P++ +N +
Sbjct: 667 KSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFI 726
Query: 207 WSVDVHRMW 215
+ M+
Sbjct: 727 ATYAADSMF 735
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 34/250 (13%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY+E + +M G + ++NA+++ F + R +EA+K EME P T
Sbjct: 277 GSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVT 336
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-------- 112
+++S Y GL++E+ + ++ GI P V Y LL+ + K+ + D A
Sbjct: 337 YNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMR 396
Query: 113 ----------YGLLDEMHTNR--------------ISNIHQ--VTGQMIKGEFDDESNWQ 146
+ L +MH NR + N VT + F
Sbjct: 397 AVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDS 456
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V +F ++ G+ +N L+ A G ++A V + G+ P+L +N ++
Sbjct: 457 QVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVL 516
Query: 207 WSVDVHRMWE 216
++ +WE
Sbjct: 517 AALARGGLWE 526
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 86/190 (45%), Gaps = 2/190 (1%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV-DE 76
GV + ++ +I A+ GR+ +A+ + +M++ C+P T VL+VY G+
Sbjct: 188 GVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSN 247
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136
+ ++S G+ P + Y L++ + + +++A L +M + +VT +
Sbjct: 248 VTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTP-DKVTYNALL 306
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
F Q V ++ G+ YN+L+ A GL E A + + +G+
Sbjct: 307 DVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIK 366
Query: 197 PELFRHNKLV 206
P++F + L+
Sbjct: 367 PDVFTYTTLL 376
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + A++ M GVA + ++N +I R+G +EEA+ + +M+ P++ T
Sbjct: 242 GMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVT 301
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
A+L V+ + E+ + QE++++G P+ + Y L++ YAK ++A L +M
Sbjct: 302 YNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMV 361
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
H ++ T ++ G F+ VF ++ G + +NAL++ G
Sbjct: 362 HKGIKPDVFTYT-TLLSG-FEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGK 419
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+V D+ P++ N L+
Sbjct: 420 FAEMMKVFDDIKLCNCSPDIVTWNTLL 446
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 57/114 (50%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ IL+ M E+ + ++N+++ + + F+++ + E+ + P+ + V+
Sbjct: 632 KAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVI 691
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
YC G + E+ F E+K S ++P V+ Y +A YA + + +A ++ M
Sbjct: 692 YAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYM 745
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N ++ F Q G + + EM++ T ++S Y G D++ ++ +
Sbjct: 441 TWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSM 500
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+G++P + Y +LA A+ W+ + +L EM R
Sbjct: 501 LEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGR 539
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 54/116 (46%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ + IL + E G+ + S+N VI A+ + GR +EA + + EM+ P+ T
Sbjct: 665 FQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNT 724
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ Y + E+ + + + G P Y ++ Y K ++ +A + +
Sbjct: 725 FIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVKNL 780
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE I S M +S + + ++N I + F EAI M K C P++ T
Sbjct: 697 NGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNT 756
Query: 61 LEAVLSVYC 69
+++ YC
Sbjct: 757 YNSIVDWYC 765
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + RM +SG+ ++ ++N VI +EA++ + M C P+ T
Sbjct: 199 GKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTF 258
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G +DE+ + + G +P V+ Y L++ R DDA LL++M
Sbjct: 259 NILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVK 318
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G + V D + G + YN L+ G E
Sbjct: 319 RQCKPTVVTQNTLIHG-LCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTE 377
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA +L + RGL P + + LV
Sbjct: 378 RARELLSDMVARGLAPNVVTYTALV 402
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 99/205 (48%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ +E ++ +M E G + ++N V++ + R EEA+ + EME++ C PN R+
Sbjct: 94 GMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSH 153
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C +D++ + F E+++ I P Y +L+ AK+ + ++AY L M
Sbjct: 154 NTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLD 213
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I+ +I G + + +E +F + +G +N L++A G +
Sbjct: 214 SGITPSAVTYNVVIHGMCLAYTLDEALE-LFKSMRSKGCRPSRFTFNILIDAHCKRGKLD 272
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+L T G P++ ++ L+
Sbjct: 273 EAFRLLKRMTDDGHVPDVVTYSTLI 297
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M G+A N ++ A++ + R EA + +M+ C PN T
Sbjct: 374 GQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTY 433
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
A++ +C AG VD + F E+ +GI P + Y L A KS R A +L E
Sbjct: 434 TALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILRE 490
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + +L M SG + + ++N ++ + G+ E A + +M PN T
Sbjct: 339 GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTY 398
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++S C A + E+ F ++KSSG P++ Y L+ + + + D L EM
Sbjct: 399 TALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVC 458
Query: 122 NRISNIHQVTGQM 134
IS H V G +
Sbjct: 459 AGISPDHVVYGTL 471
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 91/210 (43%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + ++ SGV ++ ++ ++I F++A + + +M + C P+ T
Sbjct: 24 GKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTY 83
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
++ C G+++E+ + +++ G +P V+ Y ++ KS+R ++A L +EM
Sbjct: 84 NVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMER 143
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
NR S+ + G + + D VF ++ + Y L++ L
Sbjct: 144 LGCTPNRRSHNTIILGLCQQSKIDQACQ------VFHEMEAKDIPPDSWSYGILIDGLAK 197
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G A ++ G+ P +N ++
Sbjct: 198 AGKLNEAYKLFQRMLDSGITPSAVTYNVVI 227
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 3/165 (1%)
Query: 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
N +I + GR +EA + M P+ T ++ +C AG + ++E ++ +
Sbjct: 329 NTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVA 388
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIHQVTGQMIKGEFDDESNW 145
G+ P+V+ Y L++ K+NR +A G+ +M ++ + N+ T ++ F
Sbjct: 389 RGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILG--FCSAGQV 446
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+F ++ C G Y L L G RA +L E
Sbjct: 447 DGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREG 491
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
AG +++++ FQ++ SG+ PS + Y L+ +N +DDA L +M+ R V
Sbjct: 23 AGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMN-RRGCPPSPV 81
Query: 131 TGQMIKGEFDDESNWQMVEYVFD---KLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
T ++ D M+E D K+ +G+ + YN +++ L E A +
Sbjct: 82 TYNVM---IDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLF 138
Query: 188 DEATKRGLFPELFRHNKLVWSV 209
+E + G P HN ++ +
Sbjct: 139 NEMERLGCTPNRRSHNTIILGL 160
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 104/225 (46%), Gaps = 2/225 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ RM E G+A ++ ++N+V+ + G+ E + + EM C PN T ++ +C
Sbjct: 455 LVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFC 514
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ ++E+ + ++ G+ P + + L+ + ++ + AY L ++ S
Sbjct: 515 RSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATAD 574
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G F + N M E +FD++ +G+ Y L++ +RA L E
Sbjct: 575 TFNTLI-GAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVE 633
Query: 190 ATKRGLFPELFRHNKLVWSVDV-HRMWEGGAYTAISVWLNKMYEM 233
K+G P + +++ S+ V HR+++ I V + + E+
Sbjct: 634 MIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 678
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 12/205 (5%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I + +EA+ M C P++ T ++ YC +V E+ E ++
Sbjct: 260 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 319
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G +P + YC L+ + A L +E I V ++KG
Sbjct: 320 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 379
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
++ V +++ EG ++ YN ++ L +G A V+++A +G P++F N
Sbjct: 380 LHALQ-VMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNT 438
Query: 205 LV------WSVD-----VHRMWEGG 218
L+ +D V RMWE G
Sbjct: 439 LIDGYCKRLKLDSALQLVERMWEYG 463
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 84/205 (40%), Gaps = 8/205 (3%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E QA G+ + +N++++ G A++ EM + C P+ +T
Sbjct: 350 LFNEAQA-------KGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYN 402
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V++ C G + ++ + G LP V + L+ Y K + D A L++ M
Sbjct: 403 IVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY 462
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
I+ +T + V F ++ +G YN L+E E
Sbjct: 463 GIAP-DTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEE 521
Query: 183 AARVLDEATKRGLFPELFRHNKLVW 207
A++V+ + ++ GL P+ N L++
Sbjct: 522 ASKVIVKMSQEGLHPDAVSFNTLIY 546
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 12/197 (6%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
SR+S + + + A I A+ + GR +A+ A+ M+ C P A++ A
Sbjct: 45 SRLSPATI---HPLYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDA 101
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQV 130
D++ + + + ++G+ P + + + L + + R A LL + H ++ V
Sbjct: 102 AYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVV 161
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
G G D +FD++ + +N +L AL G A +L +
Sbjct: 162 CGLYAHGHTHDARQ------LFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKV 215
Query: 191 TKRGLFPELFRHNKLVW 207
+RG+ LF +N +W
Sbjct: 216 IQRGMSINLFTYN--IW 230
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 72/142 (50%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG+ E + M SG+ + S++ +I+ F + GR ++A + + EM PN +
Sbjct: 293 GGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYS 352
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ +C G VD++ E F+E+K+SGILP V Y +L+ + + D A +EM
Sbjct: 353 YSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMT 412
Query: 121 TNRISNIHQVTGQMIKGEFDDE 142
+N S +IKG + +
Sbjct: 413 SNNFSPSAFNYCSLIKGYYKSK 434
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ ++ + N+ FNAVI QGG +EA + + EM+ P+ +
Sbjct: 259 GLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSY 318
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G VD++ E F+E+++SGILP++ Y +L+ + K R D A + +EM
Sbjct: 319 SILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKN 378
Query: 122 NRI 124
+ I
Sbjct: 379 SGI 381
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 3/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL ++ SG N ++ I+ + G F A + + + N AV+ C
Sbjct: 232 ILGKIYMSGETPNVVTYGTYIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLC 291
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIH 128
G++DE+ E F+E+K+SGILP V Y +L+ + + R D A + EM + I NI+
Sbjct: 292 QGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIY 351
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ +I G F E VF+++ G + Y+ L++ G + A + +
Sbjct: 352 SYS-ILIDG-FCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWE 409
Query: 189 EATKRGLFPELFRHNKLV 206
E T P F + L+
Sbjct: 410 EMTSNNFSPSAFNYCSLI 427
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 87/184 (47%), Gaps = 2/184 (1%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M++ G+ N ++ +I F + + A + + M++ R P++ ++++ +C G
Sbjct: 550 KMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTG 609
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ ++ F E+ G P+V+ Y + Y K N+ + A+ L ++M + Q+
Sbjct: 610 EMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYP-DQILY 668
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGL-GMRFYNALLEALWCLGLRERAARVLDEAT 191
M+ F + E +FD++ EG + Y L+ + L R++A ++ +E
Sbjct: 669 TMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYEEMR 728
Query: 192 KRGL 195
+GL
Sbjct: 729 AKGL 732
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 5/205 (2%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + A+ + E+GV N S+N I +G E+A++ M K P+
Sbjct: 471 FNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYST 530
Query: 64 VLSVYCFAGLVDESKE--QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S CFA ++ K F ++ GI +V Y +L+ ++ + D AY L M
Sbjct: 531 LIS--CFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKE 588
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+R+ ++ G F + +FD+++ EG + Y + L
Sbjct: 589 SRVYPDQIAYTSLVAG-FCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNN 647
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A ++ ++ +RG++P+ + L+
Sbjct: 648 QAHKLYEKMKERGVYPDQILYTMLI 672
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+A+ MS G + N ++ I + + + +A K Y +M++ P++ +++
Sbjct: 615 RALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAA 674
Query: 68 YCFAGLVDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+C G ++ ++ F E+K G P+V+ Y L+ Y K N+ D A L +EM +S
Sbjct: 675 FCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKGLSR 734
Query: 127 IHQVTGQM 134
+ G +
Sbjct: 735 LCSSEGSV 742
Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/115 (19%), Positives = 54/115 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M SG+ + S++ +I+ F + G + AIK + EM P+ +++ Y
Sbjct: 372 VFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYY 431
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ + ++F+ ++ G+ P + +L++Y + ++ A L ++ N +
Sbjct: 432 KSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKALALSEKFQENGV 486
>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 10/210 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR-FEEAIKAYVEMEKVRCDPNERT 60
G Y I RM+ESG++ + ++N +++ + + GR +++ ++ EM D +E T
Sbjct: 236 GKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILELLDEMRSRGLDFDEFT 295
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
VLS GL+DE++E F +KS G P + Y LL V+ K+ + +A +L EM
Sbjct: 296 CSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEME 355
Query: 121 TNRIS----NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N ++V ++ F +E V D + +G Y ++ A
Sbjct: 356 ENNCPPDAVTYNEVVAAYVRAGFHEEG-----AVVIDAMASKGIMPNAVTYTTIINAYGR 410
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G ++A + D+ + G P + +N ++
Sbjct: 411 VGDIDKALEMFDQMMELGCVPNVATYNAVL 440
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 34/251 (13%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + S + G + ++NA++ F + G F EA+ EME+ C P+ T
Sbjct: 307 GLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTY 366
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
V++ Y AG +E + S GI+P+ + Y ++ Y + D A + D+M
Sbjct: 367 NEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMME 426
Query: 121 ---TNRISNIHQVTGQMIKGEFDDES-----------------NW-------------QM 147
++ + V G + K +E W +
Sbjct: 427 LGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKY 486
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW 207
V VF ++ G+ +N L+ A G AA++ +E K G P + +N L+
Sbjct: 487 VNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLN 546
Query: 208 SVDVHRMWEGG 218
++ W+
Sbjct: 547 ALARRGDWKAA 557
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 2/149 (1%)
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR-WDDAYGLLD 117
R +L Y G + E F+ + SG+ PS++ Y ++L VY K R WD LLD
Sbjct: 223 RAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILELLD 282
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM + R + + T + E F L EGY G YNALL
Sbjct: 283 EMRS-RGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKA 341
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G+ A VL E + P+ +N++V
Sbjct: 342 GIFSEALSVLSEMEENNCPPDAVTYNEVV 370
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 109/266 (40%), Gaps = 39/266 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G++ E ++LS M E+ ++ ++N V+ A+ + G EE M PN T
Sbjct: 341 AGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVT 400
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ Y G +D++ E F ++ G +P+V Y +L + K + ++ +L M
Sbjct: 401 YTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMK 460
Query: 121 TNRISNIH--------------------QVTGQMIKGEFD---DESNWQMVEY------- 150
N S H QV +M F+ D N + Y
Sbjct: 461 LNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNN 520
Query: 151 ----VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +++ G+ + YNALL AL G + A V+ + +G FR ++
Sbjct: 521 DAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKG-----FRPSETS 575
Query: 207 WSVDVHRMWEGGAYTAISVWLNKMYE 232
+S+ VH +GG I + +Y+
Sbjct: 576 YSLMVHSYAKGGNVKGIEMIEKSIYD 601
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 89/209 (42%), Gaps = 9/209 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +K ++++ M G + S++ ++ ++ +GG +K +EK D +
Sbjct: 552 GDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGN----VKGIEMIEKSIYDGDIFPS 607
Query: 62 EAVLSVYCFAGLVDES----KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
+L A S + FQ ++ G P ++ +L+++AK+N +D A+ +L
Sbjct: 608 WMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLR 667
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+H + VT + + + E V L G + YN +++
Sbjct: 668 LIHDAGLQP-DLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRK 726
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
GL + R+L E T G+ P +F +N +
Sbjct: 727 GLMQEGIRILSEMTSIGVGPCIFTYNTFI 755
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + +L + SG + S+N VI+ F + G +E I+ EM + P T
Sbjct: 691 GGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIFT 750
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+S Y G+ E + + P+ + Y ++ Y K+ R+D+A + ++
Sbjct: 751 YNTFISGYAAQGMFTEINDVISYMIVHNCRPNELTYKIVADGYCKARRYDEAIDFVSKI 809
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E ILS M+ GV ++N I + G F E M C PNE T
Sbjct: 727 GLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHNCRPNELTY 786
Query: 62 EAVLSVYCFAGLVDESKEQFQEIK 85
+ V YC A DE+ + +IK
Sbjct: 787 KIVADGYCKARRYDEAIDFVSKIK 810
>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 950
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 12/217 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M+E G+ ++ +NA+I+ F G +EA +E+ K C PN T
Sbjct: 352 GRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTY 411
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C GL+++++ F+E++ G LPSV+ + L+ K+NR ++A L +M
Sbjct: 412 SILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEI 471
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK-LNCEGYGLGM-----------RFYNA 169
R ++ Q FD S M+E + + + + Y L M R YN
Sbjct: 472 VRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNI 531
Query: 170 LLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L+ G A ++ E +G P+ + L+
Sbjct: 532 LINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLI 568
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 79/185 (42%), Gaps = 1/185 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + S + +S++F+ +IEA+ + G E+A++++ M C P+ +L
Sbjct: 115 VLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLILHFLV 174
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ + ++ + P V+ Y +L+ K+ + DA L DEM T+R +Q
Sbjct: 175 RKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEM-TDRGILPNQ 233
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ ++ + +F K+ G + YN LL G + A +L
Sbjct: 234 IIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQL 293
Query: 190 ATKRG 194
TK G
Sbjct: 294 LTKDG 298
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 5/200 (2%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ ++M + + + ++ +I + + ++A+ + EM PN+ VLS
Sbjct: 184 AVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGL 243
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C A + +++ F ++++SG ++ Y +LL + KS DDA+ LL + + +I
Sbjct: 244 CQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKD--GHIL 301
Query: 129 QVTGQ--MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
V G +I G F ++ + K+ E + Y ++ L G A +
Sbjct: 302 GVIGYGCLINGLF-RARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTL 360
Query: 187 LDEATKRGLFPELFRHNKLV 206
L E T+RGL P+ +N L+
Sbjct: 361 LGEMTERGLRPDTICYNALI 380
>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
Length = 871
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 10/235 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM----EKVRCDPN 57
G E + ++ RM + G+A N +FNA I A + GR +A + + +M E+ P+
Sbjct: 226 GQVDEAERLVERMRDEGLAPNVVTFNARISALCKAGRVLDAYRIFNDMQEKWERGLPRPD 285
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
+ T + +LS +C AG+VDE++ ++ G L V Y L+ ++ +A LL
Sbjct: 286 QVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQELLR 345
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM + + T +I E V V D + + Y +LL A
Sbjct: 346 EMAHEGVQP-NSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSE 404
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
G A R+LDE ++G P F +N L+ S +W+ G T L +M E
Sbjct: 405 GNAAAANRILDEMAQKGCAPNSFTYNVLLQS-----LWKAGRITEAERLLERMSE 454
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + L M ++ +S ++ I + + G+ A+K +MEK C P+ RT
Sbjct: 533 GRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTY 592
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + DE + E+K GI P+VM Y L+ + + + A LLDEM
Sbjct: 593 NLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAMPLLDEMLQ 652
Query: 122 NRISNIHQVTG-QMIKGEFDDESNWQMVEYVFD 153
N I + +T +++ F S++ + VFD
Sbjct: 653 NEI--VPNITSFELLIKAFCKTSDFSAAQRVFD 683
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 24/222 (10%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM----------- 49
G E + +L RMSE G + ++ S N +I+ + + + A+ M
Sbjct: 439 AGRITEAERLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLALGRL 498
Query: 50 ------------EKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC 97
RC P+ T ++S C G DE+K++ E+ I P + Y
Sbjct: 499 GYSFLSLLTDSSSSKRCLPDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYD 558
Query: 98 MLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC 157
+ Y K + A +L +M + +I G F ++ N + + ++
Sbjct: 559 TFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIWG-FREKHNSDEILKLISEMKG 617
Query: 158 EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
+G + YN+L+++ G+ +A +LDE + + P +
Sbjct: 618 KGICPNVMTYNSLIKSFCERGMVNKAMPLLDEMLQNEIVPNI 659
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 85/197 (43%), Gaps = 7/197 (3%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
R+ ++ RN SF + + + GR +A+ M + N V++ +C G
Sbjct: 171 RVFDAMPERNEFSFGILARGYCRAGRSMDALGVLDSMPTM----NLVVCNTVVAGFCREG 226
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN---RISNIHQ 129
VDE++ + ++ G+ P+V+ + ++ K+ R DAY + ++M + Q
Sbjct: 227 QVDEAERLVERMRDEGLAPNVVTFNARISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQ 286
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT ++ F + + D + C G+ + YN L L G+ A +L E
Sbjct: 287 VTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQELLRE 346
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P + +N +V
Sbjct: 347 MAHEGVQPNSYTYNIIV 363
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 83/230 (36%), Gaps = 47/230 (20%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ E + ++ M G R +S+N + + G EA + EM PN T
Sbjct: 299 AGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYT 358
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G + ++ +KS + P V+ Y LL Y
Sbjct: 359 YNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCS--------------- 403
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
E N + D++ +G YN LL++LW G
Sbjct: 404 ---------------------EGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRI 442
Query: 181 ERAARVLDEATKRG----------LFPELFRHNKLVWSVD-VHRMWEGGA 219
A R+L+ +++G + L R+NKL ++D V MW G+
Sbjct: 443 TEAERLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGS 492
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 15/163 (9%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N ++ A Q RF+ Y ++ P+ T +L C AG ++ ++ F +
Sbjct: 118 YNRLLLAALQEARFDLVESLYKDLLLSGAAPDVFTRNILLQALCAAGRMELARRVFDAMP 177
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+ + +L Y ++ R DA G+LD M T ++ V + F E
Sbjct: 178 ER----NEFSFGILARGYCRAGRSMDALGVLDSMPT-----MNLVVCNTVVAGFCREGQV 228
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
E + +++ EG + +NA + AL +A RVLD
Sbjct: 229 DEAERLVERMRDEGLAPNVVTFNARISALC------KAGRVLD 265
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 49/269 (18%), Positives = 96/269 (35%), Gaps = 69/269 (25%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR------FEEAIKAYV-------- 47
G+ E Q +L M+ GV NS ++N +++ + G+ E+ +K+ V
Sbjct: 335 GMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTY 394
Query: 48 ---------------------EMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
EM + C PN T +L AG + E++ + +
Sbjct: 395 TSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSE 454
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--------------------------- 119
G +++ ++N+ D A ++D M
Sbjct: 455 KGYSLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKR 514
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+RI+ V+ +G FD E+ +++E + ++ + Y+ + G
Sbjct: 515 CLPDRITYSTLVSALCKEGRFD-EAKKKLLEMIGKDISPDSV-----LYDTFIHGYCKHG 568
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVW 207
A +VL + K+G P +N L+W
Sbjct: 569 KTSLAVKVLRDMEKKGCKPSTRTYNLLIW 597
>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 805
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 39/263 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E A + G A ++NA+++ F + G + EA++ EME C P+ T
Sbjct: 268 GLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTY 327
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ Y AG E+ + + G+LP+ Y ++ Y + + D+A L D M
Sbjct: 328 NELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKK 387
Query: 122 N--------------------RISNIHQVTGQMIK-GEFDDESNWQMVEYVFDKLNCEGY 160
N R + + ++ G+M + G + W + V K E Y
Sbjct: 388 NGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRGMESY 447
Query: 161 GL----GMR---------FYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW 207
GM+ YN L+ A G R A ++ DE T G P L +N L
Sbjct: 448 VTRVLEGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNAL-- 505
Query: 208 SVDVHRMWEGGAYTAISVWLNKM 230
++ + G +TA ++KM
Sbjct: 506 ---LNVLSRQGDWTAARSIVSKM 525
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 2/203 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y+ + + GVA ++N V++ + R G + + +M +P+ T
Sbjct: 197 GRYERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPRVVALLADMRAAGVEPDGFT 256
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ GLVDE+ F+++K+ G P V+ Y LL V+ K+ + +A +L EM
Sbjct: 257 ASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLREME 316
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ VT + G + +Q D + +G YN ++ A G
Sbjct: 317 -DAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKV 375
Query: 181 ERAARVLDEATKRGLFPELFRHN 203
+ A + D K G P +N
Sbjct: 376 DEALALFDRMKKNGFIPYTNTYN 398
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M V D++N +I A+ + G A K Y EM P T A+L+V
Sbjct: 451 VLEGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLS 510
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ ++KS G P+ M Y +LL +AK + E++ I
Sbjct: 511 RQGDWTAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWV 570
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ ++ F + +E F ++ G+ + N++L GL +A + +
Sbjct: 571 ILRTLVIANFKCR-RLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFES 629
Query: 190 ATKRGLFPELFRHNKLV 206
+ GL P+L +N L+
Sbjct: 630 IEQLGLSPDLITYNSLM 646
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 78/204 (38%), Gaps = 7/204 (3%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME---KVRCDPNERTLEAVL 65
A+L G A F V+ A + GR + EM R D R VL
Sbjct: 133 ALLRWARAEGAADGPAPFEMVVRALGREGRHDAVCALLDEMPLPPGARLD--VRAYTTVL 190
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR-WDDAYGLLDEMHTNRI 124
G + + F E++ G+ P+ + Y ++L VY + R W LL +M +
Sbjct: 191 HALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPRVVALLADMRAAGV 250
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+I D + V + F+ L G+ + YNALL+ G A
Sbjct: 251 EPDGFTASTVIAAAGRDGLVDEAVAF-FEDLKARGHAPCVVTYNALLQVFGKAGNYTEAL 309
Query: 185 RVLDEATKRGLFPELFRHNKLVWS 208
RVL E G P+ +N+L S
Sbjct: 310 RVLREMEDAGCKPDAVTYNELAGS 333
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 38 RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC 97
R E +A+ E++ P+ L ++LS+Y GL ++ E F+ I+ G+ P ++ Y
Sbjct: 584 RLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYN 643
Query: 98 MLLAVYAKSNRWDDAYGLLDEMH 120
L+ +YAKSN +A +L+ +
Sbjct: 644 SLMDMYAKSNEPWEAEKILNRLR 666
>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 783
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 12/217 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M+E G+ ++ +NA+I+ F G +EA +E+ K C PN T
Sbjct: 352 GRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTY 411
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C GL+++++ F+E++ G LPSV+ + L+ K+NR ++A L +M
Sbjct: 412 SILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEI 471
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK-LNCEGYGLGM-----------RFYNA 169
R ++ Q FD S M+E + + + + Y L M R YN
Sbjct: 472 VRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNI 531
Query: 170 LLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L+ G A ++ E +G P+ + L+
Sbjct: 532 LINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLI 568
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 5/200 (2%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ ++M + + + ++ +I + + ++A+ + EM PN+ VLS
Sbjct: 184 AVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGL 243
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C A + +++ F ++++SG ++ Y +LL + KS DDA+ LL + + +I
Sbjct: 244 CQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKD--GHIL 301
Query: 129 QVTGQ--MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
V G +I G F ++ + K+ E + Y ++ L G A +
Sbjct: 302 GVIGYGCLINGLF-RARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTL 360
Query: 187 LDEATKRGLFPELFRHNKLV 206
L E T+RGL P+ +N L+
Sbjct: 361 LGEMTERGLRPDTICYNALI 380
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 79/185 (42%), Gaps = 1/185 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + S + +S++F+ +IEA+ + G E+A++++ M C P+ +L
Sbjct: 115 VLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLILHFLV 174
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ + ++ + P V+ Y +L+ K+ + DA L DEM T+R +Q
Sbjct: 175 RKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEM-TDRGILPNQ 233
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ ++ + +F K+ G + YN LL G + A +L
Sbjct: 234 IIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQL 293
Query: 190 ATKRG 194
TK G
Sbjct: 294 LTKDG 298
>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
[Vitis vinifera]
Length = 811
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 16/214 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++L + + G + ++ ++I AF GR+ EA+ + +ME+V C P T
Sbjct: 178 GGRVSAAASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLIT 237
Query: 61 LEAVLSVYC--------FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+L+VY GLVD +KS+GI P Y L++ + N +++A
Sbjct: 238 YNVILNVYGKMGMPWNKMVGLVD-------RMKSAGIAPDSYTYNTLISCCRRGNLYEEA 290
Query: 113 YGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
G+L EM S +VT + + + V ++ G + YN+L+
Sbjct: 291 AGVLKEMKLAGFSP-DKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLIS 349
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
A GL E A + ++ ++G+ P++F + L+
Sbjct: 350 AYARDGLLEDALELKNQMVEKGIKPDVFTYTTLL 383
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 1/208 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY+E +L M +G + + ++NA+++ + + R +EA++ EME C P+ T
Sbjct: 284 GNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVT 343
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++S Y GL++++ E ++ GI P V Y LL+ + K+ + A + +EM
Sbjct: 344 YNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMR 403
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+IK + +M++ VF+ + + +N LL G+
Sbjct: 404 NEGCKPNICTFNALIKMHGNRGKFTEMMK-VFEDIKTFQCSPDIVTWNTLLSVFGQNGMD 462
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWS 208
+ V E + G PE N L+ S
Sbjct: 463 SEVSGVFKEMKRAGFVPERDTFNTLISS 490
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 94/198 (47%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ RM +G+A +S ++N +I R+G +EEA EM+ P++ T A+L VY
Sbjct: 257 GLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVY 316
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+ E+ E QE++ +G PS++ Y L++ YA+ +DA L ++M I
Sbjct: 317 GKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDV 376
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G F+ + +F+++ EG + +NAL++ G +V +
Sbjct: 377 FTYTTLLSG-FEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFE 435
Query: 189 EATKRGLFPELFRHNKLV 206
+ P++ N L+
Sbjct: 436 DIKTFQCSPDIVTWNTLL 453
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 7/209 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + M +G D+FN +I ++ + G F++A+ Y M + +P+ +
Sbjct: 460 GMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSY 519
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
AVL+ GL +S++ E+K P+ + YC LL YA + L +E++
Sbjct: 520 NAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIY- 578
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMV---EYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
S I + ++K S ++ E F +L G+ + NA++
Sbjct: 579 ---SGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQ 635
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVW 207
+ +A +LD + G P L +N L++
Sbjct: 636 MVAKANEILDCMKRGGFTPSLTTYNSLMY 664
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K I M G N +FNA+I+ G+F E +K + +++ +C P+ T
Sbjct: 389 AGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVT 448
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+LSV+ G+ E F+E+K +G +P + L++ Y++ +D A + M
Sbjct: 449 WNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRM 507
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 95/216 (43%), Gaps = 3/216 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+K+ + +L+ M + N ++ +++ A+ G E E+ +P
Sbjct: 529 GGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVL 588
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
L+ ++ V L+ E++ F E++ G P + ++++Y + A +LD M
Sbjct: 589 LKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMK 648
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ T + + +N++ E + ++ +G + YN ++ A +C R
Sbjct: 649 RGGFTP-SLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYA-YCRNGR 706
Query: 181 ER-AARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
R A+RVL E + G P++ +N + S M+
Sbjct: 707 MRDASRVLSEMRESGPAPDIITYNTFIASYAADSMF 742
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N ++ F Q G E + EM++ P T ++S Y G D++ ++ +
Sbjct: 448 TWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRM 507
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+G+ P + Y +LA A+ W + +L EM R
Sbjct: 508 LEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGR 546
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +LS M ESG A + ++N I ++ F EAI M K C PN+ T
Sbjct: 705 GRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTY 764
Query: 62 EAVLSVYCFAGLVDES 77
+++ YC DE+
Sbjct: 765 NSIVDWYCKLNRRDEA 780
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 47/103 (45%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL M G + ++N+++ + + FE + + E+ P+ + V+ YC
Sbjct: 643 ILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYC 702
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
G + ++ E++ SG P ++ Y +A YA + + +A
Sbjct: 703 RNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEA 745
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ + IL + G+ + S+N VI A+ + GR +A + EM + P+ T
Sbjct: 672 FERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNT 731
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
++ Y + E+ + + G P+ Y ++ Y K NR D+A
Sbjct: 732 FIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEA 780
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 9/201 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I+S +S G A + ++N ++ G++E + +M C+ N T ++S C
Sbjct: 253 IISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVC 312
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RIS 125
G V+E +++K G+ P CY L+A K R D A +LD M ++ I
Sbjct: 313 RDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIV 372
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
N + + + K + DE+ +F+KL G YN++ ALW G + RA
Sbjct: 373 NYNTILACLCKQKRADEA-----LSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALG 427
Query: 186 VLDEATKRGLFPELFRHNKLV 206
++ E +G+ P+ +N L+
Sbjct: 428 MILEMLDKGVDPDGITYNSLI 448
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +I ++ E G + N+ S+N++ A G A+ +EM DP+ T +++
Sbjct: 389 EALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLI 448
Query: 66 SVYCFAGLVDESKEQF--QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
S C G+VDE+ E E++SS PSV+ Y ++L K +R DA +L M
Sbjct: 449 SCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAM 504
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +IEA G +EA+K EM ++ P+ T +++ C G VD + + I
Sbjct: 198 TYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSI 257
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S G P V+ Y +LL +W+ Y L+ +M R + VT ++ +
Sbjct: 258 SSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDM-VARGCEANVVTYSVLISSVCRDGK 316
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + +G Y+ L+ AL G + A VLD G P++ +N
Sbjct: 317 VEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNT 376
Query: 205 LV 206
++
Sbjct: 377 IL 378
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 7/188 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++NA+I F + R + A + M+ P+ T ++ C G++D + E ++
Sbjct: 128 AYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQL 187
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD--- 141
P+V+ Y +L+ D+A LLDEM + +I+G +
Sbjct: 188 LKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYV 247
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+ +Q++ + K GY + YN LL L G E ++ + RG +
Sbjct: 248 DRAFQIISSISSK----GYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVT 303
Query: 202 HNKLVWSV 209
++ L+ SV
Sbjct: 304 YSVLISSV 311
>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
Length = 841
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 6/218 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E Q L ++ + G ++N +I+ F + G A+ Y EM K+ PN T
Sbjct: 551 AGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFT 610
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +C + +D + + E+K+ GI V YC L+ + + +A LL E+
Sbjct: 611 YTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQ 670
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+S V MI G F N + ++ ++ EG ++ Y L+ L G
Sbjct: 671 EVGLSPNKVVYSSMISG-FRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKL 729
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A+ + E +G+ P+L + +SV +H + G
Sbjct: 730 LFASELYAEMLAKGIMPDL-----ITYSVLIHGLCNKG 762
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 4/199 (2%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L M + G + F VI + G+ EA+K EM N ++ Y
Sbjct: 280 GLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGY 339
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G +D + E F ++ +GI P+ + Y +++ K+ D AY + ++M IS
Sbjct: 340 CKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTV 399
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF-YNALLEALWCLGLRERAARVL 187
+I+G S + + + + C G+ F YN+LL L G A +
Sbjct: 400 FNVNSLIRGYLKARSPEEASKLFDEAVAC---GIANVFTYNSLLSWLCKEGKMSEACSIW 456
Query: 188 DEATKRGLFPELFRHNKLV 206
++ ++G+ P + +N ++
Sbjct: 457 EKMVRKGVRPSVVSYNNMI 475
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 10/193 (5%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G+A N ++N+++ + G+ EA + +M + P+ + ++ +C G +D +
Sbjct: 429 GIA-NVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSA 487
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS----NIHQVTGQ 133
F E+ G+ P+++ Y +L+ Y K + A+GL D M I+ + +
Sbjct: 488 NGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIING 547
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ K ES ++ KL EG+ YN +++ G A V E K
Sbjct: 548 LCKAGRTSESQDRL-----KKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKI 602
Query: 194 GLFPELFRHNKLV 206
G+ P +F + L+
Sbjct: 603 GVSPNVFTYTNLI 615
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 85/201 (42%), Gaps = 2/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + M G N +++ + + G + A++ + +M + PN T ++
Sbjct: 312 EAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVII 371
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G +D++ E + ++K+ I P+V L+ Y K+ ++A L DE I+
Sbjct: 372 EWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIA 431
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
N+ T + E +++K+ +G + YN ++ G + A
Sbjct: 432 NVF--TYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANG 489
Query: 186 VLDEATKRGLFPELFRHNKLV 206
V E ++GL P L ++ L+
Sbjct: 490 VFVEMLEKGLKPNLITYSVLM 510
>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 827
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 102/240 (42%), Gaps = 33/240 (13%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + M +G D+FN +I A+ + G F++A+ Y M + P+ +
Sbjct: 477 GMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSY 536
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
AVL+ GL ++S++ F E+K P+ + YC LL YA S + + L +E+++
Sbjct: 537 NAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYS 596
Query: 122 NRISNIHQVTGQMI---------------------KGEFDDES---------NWQMV--- 148
+ + ++ KG D + QMV
Sbjct: 597 GLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKGSPDLSTLNAMIAIYGRRQMVAKA 656
Query: 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
+ + +N G+ + YN+L+ ER+ VL E +GL P+L +N ++++
Sbjct: 657 NEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFA 716
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 96/206 (46%), Gaps = 2/206 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +IL+ + + G + ++ ++I A+ GR+ +A+ + +ME+ C P T
Sbjct: 196 GKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITY 255
Query: 62 EAVLSVYCFAGLV-DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L+VY G+ + +KSSG+ P Y L++ + + +++A + +EM
Sbjct: 256 NVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMK 315
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ S +VT + + + V ++ G+ + YN+L+ A GL
Sbjct: 316 LSGFSP-DKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLL 374
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A + D+ ++G+ P++F + L+
Sbjct: 375 REAMELKDQMVEKGIKPDVFTYTTLL 400
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY+E + M SG + + +FN +++ + + R +EA++ EME P+ T
Sbjct: 301 GSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVT 360
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++S Y GL+ E+ E ++ GI P V Y LL+ + K+ + A + EM
Sbjct: 361 YNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMR 420
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+IK + +M++ VF+++ + +N LL G+
Sbjct: 421 AAGCKPNICTFNALIKMHGNRGRFAEMMK-VFEEIEICNCAPDIVTWNTLLAVFGQNGMD 479
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ V E + G PE N L+
Sbjct: 480 SEVSGVFKEMKRAGFVPERDTFNTLI 505
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + ++ M SGVA + ++N +I R+G +EEA + + EM+ P++ T
Sbjct: 266 GMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVT 325
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L VY + E+ E +E++ SG PS++ Y L++ YA+ +A L D+M
Sbjct: 326 FNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMV 385
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I ++ G F+ + +F ++ G + +NAL++ G
Sbjct: 386 EKGIKPDVFTYTTLLSG-FEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRF 444
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+V +E P++ N L+
Sbjct: 445 AEMMKVFEEIEICNCAPDIVTWNTLL 470
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 9/159 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ + I M +G N +FNA+I+ GRF E +K + E+E C P+ T
Sbjct: 406 AGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVT 465
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L+V+ G+ E F+E+K +G +P + L++ Y++ + A + M
Sbjct: 466 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRML 525
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKL 155
T +S+ + V + +G W+ E VF ++
Sbjct: 526 EAGVTPDLSSYNAVLAALARGGL-----WEQSEKVFAEM 559
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 58/110 (52%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL+ M+ESG + + ++N+++ + FE + + E+ P+ + V+ YC
Sbjct: 659 ILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYC 718
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G + ++ F +K+ G++P V+ Y +A YA + ++DA G++ M
Sbjct: 719 RNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYM 768
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 104/225 (46%), Gaps = 2/225 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ RM E G+A ++ ++N+V+ + G+ E + + EM C PN T ++ +C
Sbjct: 453 LVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFC 512
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ ++E+ + ++ G+ P + + L+ + ++ + AY L ++ S
Sbjct: 513 RSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATAD 572
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G F + N M E +FD++ +G+ Y L++ +RA L E
Sbjct: 573 TFNTLI-GAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVE 631
Query: 190 ATKRGLFPELFRHNKLVWSVDV-HRMWEGGAYTAISVWLNKMYEM 233
K+G P + +++ S+ V HR+++ I V + + E+
Sbjct: 632 MIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 676
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 12/205 (5%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I + +EA+ M C P++ T ++ YC +V E+ E ++
Sbjct: 258 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 317
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G +P + YC L+ + A L +E I V ++KG
Sbjct: 318 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 377
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
++ V +++ EG ++ YN ++ L +G A V+++A +G P++F N
Sbjct: 378 LHALQ-VMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNT 436
Query: 205 LV------WSVD-----VHRMWEGG 218
L+ +D V RMWE G
Sbjct: 437 LIDGYCKRLKLDSALQLVERMWEYG 461
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 18/210 (8%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E QA G+ + +N++++ G A++ EM + C P+ +T
Sbjct: 348 LFNEAQA-------KGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYN 400
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
V++ C G + ++ + G LP V + L+ Y K + D A L++ M
Sbjct: 401 IVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY 460
Query: 120 --HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ I+ + G G+ ++ V F ++ +G YN L+E
Sbjct: 461 GIAPDTITYNSVLNGLCKAGKVNE------VNETFQEMILKGCHPNPITYNILIENFCRS 514
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVW 207
E A++V+ + ++ GL P+ N L++
Sbjct: 515 NKMEEASKVIVKMSQEGLHPDAVSFNTLIY 544
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 12/197 (6%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
SR+S + + + A I A+ + GR +A+ A+ M+ C P A++ A
Sbjct: 43 SRLSPATI---HPLYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDA 99
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQV 130
D++ + + + ++G+ P + + + L + + R A LL + H ++ V
Sbjct: 100 AYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVV 159
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
G G D +FD++ + +N +L AL G A +L +
Sbjct: 160 CGLYAHGHTHD------ARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKV 213
Query: 191 TKRGLFPELFRHNKLVW 207
+RG+ LF +N +W
Sbjct: 214 IQRGMSINLFTYN--IW 228
>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 472
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 2/194 (1%)
Query: 14 MSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
M E G+ S N +I+A R G + +K ++EM K CDP+ T ++S C G
Sbjct: 147 MREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFG 206
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+DE+K+ F E+ P+V+ Y L+ S D+A L+EM + I
Sbjct: 207 RIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYS 266
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ G D + Q +E +F+ + G M Y L+ L + A +LD
Sbjct: 267 SLMDGLCKDGRSLQAME-LFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNL 325
Query: 193 RGLFPELFRHNKLV 206
+GL P+ + K++
Sbjct: 326 QGLKPDAGLYGKVI 339
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 8/204 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M + G +S ++ +I + GR +EA K + EM + C P T ++++ C
Sbjct: 179 IFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLC 238
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ VDE+ +E+KS GI P+V Y L+ K R A L EM R +
Sbjct: 239 GSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELF-EMMMARGCRPNM 297
Query: 130 VT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT +I G ++ + VE + D++N +G Y ++ + AA LD
Sbjct: 298 VTYTTLITGLCKEQKIQEAVE-LLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLD 356
Query: 189 EATKRGLFPELFRHNKLVWSVDVH 212
E G+ P N+L W++ V
Sbjct: 357 EMILGGITP-----NRLTWNIHVK 375
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 104/247 (42%), Gaps = 19/247 (7%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+K + ++ RM + D ++ + + R ++++ + +M+ CDP+++
Sbjct: 67 FKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVT 126
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-YGLLDEMHTN 122
VL++ ++ + + ++ ++ G+ P+V +L+ +++ DA + EM
Sbjct: 127 VLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKR 186
Query: 123 RISNIHQVTGQMIKG--EFD--DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
G +I G F DE+ E V + +C + Y +L+ L
Sbjct: 187 GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMV--EKDCAPTVVT---YTSLINGLCGSK 241
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238
+ A R L+E +G+ P +F ++ L+ +G S+ +++EM M
Sbjct: 242 NVDEAMRYLEEMKSKGIEPNVFTYSSLM---------DGLCKDGRSLQAMELFEMMMARG 292
Query: 239 DLPQLAT 245
P + T
Sbjct: 293 CRPNMVT 299
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 9/186 (4%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N ++ A G++EE K +M +CDPN T +++ C G ++E+ + +
Sbjct: 296 SYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLM 355
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RISNIHQVTGQMIKGEFD 140
K G+ P Y L+A + + R D A L+ M ++ I N + V + K
Sbjct: 356 KEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKA 415
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
D Q +E +F KL G YN + ALW G + RA ++ E G+ P+
Sbjct: 416 D----QALE-IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEI 470
Query: 201 RHNKLV 206
+N ++
Sbjct: 471 TYNSMI 476
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I ++ E G + NS S+N + A G A+ +EM DP+E T +++S C
Sbjct: 421 IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLC 480
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
G+VD++ E +++S PSV+ Y ++L + K++R +DA +LD M N
Sbjct: 481 REGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGN 533
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 91 PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150
P V Y L+ + K NR DDA +LD M + S VT ++ G +
Sbjct: 152 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSP-DTVTYNIMIGSLCSRGKLDLALK 210
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V D+L + + Y L+EA G + A ++LDE RGL P++F +N ++
Sbjct: 211 VLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTII 266
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 85/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM + ++ ++N +I + G+ + A+K ++ C P T ++
Sbjct: 176 VLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATM 235
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VDE+ + E+ S G+ P + Y ++ K D A+ ++ + +
Sbjct: 236 LEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLEL-KGCEPDV 294
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ ++ ++ W+ E + K+ E + Y+ L+ L G E A +L
Sbjct: 295 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKL 354
Query: 190 ATKRGLFPELFRHNKLV 206
++GL P+ + ++ L+
Sbjct: 355 MKEKGLTPDAYSYDPLI 371
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 83/197 (42%), Gaps = 12/197 (6%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++NA+I F + R ++A + M P+ T ++ C G +D + + ++
Sbjct: 156 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQL 215
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S P+V+ Y +L+ D+A LLDEM + + +I+G +
Sbjct: 216 LSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKE--- 272
Query: 145 WQMVEYVFD---KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
MV+ F+ L +G + YN LL AL G E +++ + +F E
Sbjct: 273 -GMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTK-----MFSEKCD 326
Query: 202 HNKLVWSVDVHRMWEGG 218
N + +S+ + + G
Sbjct: 327 PNVVTYSILITTLCRDG 343
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 79/185 (42%), Gaps = 1/185 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +IEA G +EA+K EM P+ T ++ C G+VD + E + +
Sbjct: 226 TYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNL 285
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ G P V+ Y +LL +W++ L+ +M + + + + VT ++ +
Sbjct: 286 ELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK-CDPNVVTYSILITTLCRDGK 344
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + +G Y+ L+ A G + A L+ G P++ +N
Sbjct: 345 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNT 404
Query: 205 LVWSV 209
++ ++
Sbjct: 405 VLATL 409
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 104/225 (46%), Gaps = 2/225 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ RM E G+A ++ ++N+V+ + G+ E + + EM C PN T ++ +C
Sbjct: 452 LVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFC 511
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ ++E+ + ++ G+ P + + L+ + ++ + AY L ++ S
Sbjct: 512 RSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATAD 571
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G F + N M E +FD++ +G+ Y L++ +RA L E
Sbjct: 572 TFNTLI-GAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVE 630
Query: 190 ATKRGLFPELFRHNKLVWSVDV-HRMWEGGAYTAISVWLNKMYEM 233
K+G P + +++ S+ V HR+++ I V + + E+
Sbjct: 631 MIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 675
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 12/205 (5%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I + +EA+ M C P++ T ++ YC +V E+ E ++
Sbjct: 257 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 316
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G +P + YC L+ + A L +E I V ++KG
Sbjct: 317 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 376
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
++ V +++ EG ++ YN ++ L +G A V+++A +G P++F N
Sbjct: 377 LHALQ-VMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNT 435
Query: 205 LV------WSVD-----VHRMWEGG 218
L+ +D V RMWE G
Sbjct: 436 LIDGYCKRLKLDSALQLVERMWEYG 460
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 18/210 (8%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E QA G+ + +N++++ G A++ EM + C P+ +T
Sbjct: 347 LFNEAQA-------KGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYN 399
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
V++ C G + ++ + G LP V + L+ Y K + D A L++ M
Sbjct: 400 IVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY 459
Query: 120 --HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ I+ + G G+ ++ V F ++ +G YN L+E
Sbjct: 460 GIAPDTITYNSVLNGLCKAGKVNE------VNETFQEMILKGCHPNPITYNILIENFCRS 513
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVW 207
E A++V+ + ++ GL P+ N L++
Sbjct: 514 NKMEEASKVIVKMSQEGLHPDAVSFNTLIY 543
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 12/197 (6%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
SR+S + + + A I A+ + GR +A+ A+ M+ C P A++ A
Sbjct: 42 SRLSPATI---HPLYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDA 98
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQV 130
D++ + + + ++G+ P + + + L + + R A LL + H ++ V
Sbjct: 99 AYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVV 158
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
G G D +FD++ + +N +L AL G A +L +
Sbjct: 159 CGLYAHGHTHD------ARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKV 212
Query: 191 TKRGLFPELFRHNKLVW 207
+RG+ LF +N +W
Sbjct: 213 IQRGMSINLFTYN--IW 227
>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
Length = 802
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 104/204 (50%), Gaps = 17/204 (8%)
Query: 6 ECQA---ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
ECQ +LS M E G + N ++ A+I+ + G+ + +++ +++M C PN T
Sbjct: 564 ECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYR 623
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ C AGL+DE+ E+K + + YC ++ ++K ++ + GLL+E+ ++
Sbjct: 624 VLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSK--KFIASLGLLEELESH 681
Query: 123 RISNIHQVTGQMI-----KGEFDD--ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
I V G +I G ++ E + +M+E + LN + Y +L++AL
Sbjct: 682 GTVPIAPVYGLLIDNFSKAGRLEEALELHKEMME-LSSSLNITSKDM----YTSLIQALC 736
Query: 176 CLGLRERAARVLDEATKRGLFPEL 199
E+A + E T++G+ PEL
Sbjct: 737 LASQLEKAFELYSEITRKGVVPEL 760
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 17/222 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL ++ ++ M G + N ++ A++ A+ + + +A + M C PN T
Sbjct: 336 AGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTIT 395
Query: 61 LEAVLSVYCFAGLVDESKEQFQEI----------------KSSGILPSVMCYCMLLAVYA 104
A++ C AG + ++ E + ++ + I P+V+ Y L+
Sbjct: 396 YSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLC 455
Query: 105 KSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGM 164
K+++ DA LLD M +N H + +I G F + VF +++ GY +
Sbjct: 456 KAHKVVDAQELLDAMLSNGCEPNHIIYDALIDG-FCKVGKIDNAQEVFLRMSKCGYLPTV 514
Query: 165 RFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
Y +L++A++ + A +VL + + P + + ++
Sbjct: 515 HTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMI 556
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS+M ES N ++ A+I+ + G ++A+K ME+ C PN T A++
Sbjct: 536 VLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLG 595
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+G VD S + F ++ + G P+ + Y +L+ + D+A+ LL EM
Sbjct: 596 KSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEM 645
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 89/212 (41%), Gaps = 15/212 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I+ M G ++ +++ VI + + E+A + EM+ V +P+ T ++ +C
Sbjct: 275 IIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFC 334
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
AGL+++++ F E++S G +V+ Y LL Y K+ + A + + M N I
Sbjct: 335 KAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTI 394
Query: 125 SNIHQVTGQMIKGEFDD----------ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ V G GE S+ ++ F+ + + + Y AL++ L
Sbjct: 395 TYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGL 454
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
A +LD G P ++ L+
Sbjct: 455 CKAHKVVDAQELLDAMLSNGCEPNHIIYDALI 486
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 3/189 (1%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
+A N ++ A+I+ + + +A + M C+PN +A++ +C G +D ++
Sbjct: 440 IAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQ 499
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQVTGQMIKG 137
E F + G LP+V Y L+ K R D A +L +M ++ N+ T MI G
Sbjct: 500 EVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTA-MIDG 558
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
Q + + +G + Y AL++ L G + + ++ + + +G P
Sbjct: 559 -LCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAP 617
Query: 198 ELFRHNKLV 206
+ L+
Sbjct: 618 NYVTYRVLI 626
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + RMS+ G ++ ++I+A + R + A+K +M + C PN T A++
Sbjct: 499 QEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDG 558
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
C G ++ + ++ G P+V+ Y L+ KS + D + L +M T
Sbjct: 559 LCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMST 612
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE---AVL 65
+L + G + + +I+ F + GR EEA++ + EM ++ N + + +++
Sbjct: 673 GLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLI 732
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLLDE 118
C A ++++ E + EI G++P + + L+ K N+W++A Y + DE
Sbjct: 733 QALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDE 789
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 1/150 (0%)
Query: 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
G+F+ A + M P+ T V++ C A V+++ FQE+KS G+ P V Y
Sbjct: 267 GKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTY 326
Query: 97 CMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN 156
+L+ + K+ + A DEM + S + VT + + +F+++
Sbjct: 327 TILIDSFCKAGLIEQARSWFDEMRSIGCS-ANVVTYTALLHAYLKAKQLPQASDIFNRMI 385
Query: 157 CEGYGLGMRFYNALLEALWCLGLRERAARV 186
G Y+AL++ L G ++A V
Sbjct: 386 DAGCPPNTITYSALVDGLCKAGEIQKACEV 415
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 11/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +S G + ++N ++ G++ E K EM + C PN T ++ C
Sbjct: 265 LLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLC 324
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RIS 125
G V+E+ + +K G+ P CY L+A + + R D A L+ M ++ I
Sbjct: 325 RDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIV 384
Query: 126 NIHQVTGQMIK-GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
N + + + + G+ D Q +E VF+KL+ G + YN L ALW G R RA
Sbjct: 385 NYNTIMAGLCRTGKAD-----QALE-VFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRAL 438
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ + +G+ P+ +N L+
Sbjct: 439 EMILKLLNQGIDPDEITYNSLI 460
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ ++ E G N S+N + A G A++ +++ DP+E T +++S C
Sbjct: 405 VFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLC 464
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G+VDE+ E +++S P+V+ Y ++L K NR +DA +L M
Sbjct: 465 RDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAM 514
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 7/188 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++NA+I F + + E A + M+ P+ T ++ +C G +D + E F+E+
Sbjct: 140 AYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEEL 199
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
P+V+ Y +L+ D A LLDEM + + +I+G +
Sbjct: 200 LKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKE--- 256
Query: 145 WQMVEYVFD---KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
MV+ F+ L+ G + YN LL L G +++ E G P +
Sbjct: 257 -MMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVT 315
Query: 202 HNKLVWSV 209
H+ L+ ++
Sbjct: 316 HSILIGTL 323
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 75/182 (41%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +IEA G + A+K EM +P+ T A++ C +VD++ E + +
Sbjct: 210 TYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSL 269
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S G P ++ Y +LL +W + L+ EM + + VT ++ G +
Sbjct: 270 SSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKP-NVVTHSILIGTLCRDGK 328
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + +G Y+ L+ G + A L+ G P++ +N
Sbjct: 329 VEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNT 388
Query: 205 LV 206
++
Sbjct: 389 IM 390
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L M E G+ ++ ++ +I F + GR + A + M C P+
Sbjct: 327 GKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNY 386
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL-AVYAKSNRW 109
+++ C G D++ E F+++ G P+V Y L A+++ +R+
Sbjct: 387 NTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRY 435
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y+ + IL +++ G+ + ++N++I + G +EAI+ V+M+ R PN +
Sbjct: 432 GDRYRALEMILKLLNQ-GIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVS 490
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L C +++ E + G P+ Y +L+ S +A L + +H
Sbjct: 491 YNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMELANSLH 550
>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
Length = 702
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 3/188 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + A + G ++NA+++ F + G + EA++ EME C P+ T
Sbjct: 174 GLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTY 233
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ Y AG +E+ + + S G+LP+ Y ++ YA R D+A L D M
Sbjct: 234 NELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKK 293
Query: 122 N-RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + N++ T +I G +S + + + ++++ G +N +L G+
Sbjct: 294 NGYVPNVN--TYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGME 351
Query: 181 ERAARVLD 188
+ RVL+
Sbjct: 352 DYVTRVLN 359
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 91/204 (44%), Gaps = 2/204 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVE-MEKVRCDPNER 59
G Y+ + + + GV ++N V++ + + GR I A +E M +P++
Sbjct: 102 AGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDF 161
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T V++ GL+D++ F+++K+ G +P V+ Y LL V+ K+ + +A +L EM
Sbjct: 162 TASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEM 221
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ VT + G + ++ D + +G YN ++ A +G
Sbjct: 222 EDSGCQP-DAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGR 280
Query: 180 RERAARVLDEATKRGLFPELFRHN 203
+ A + D K G P + +N
Sbjct: 281 VDEALALFDRMKKNGYVPNVNTYN 304
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 38/233 (16%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y E +L M +SG ++ ++N + + + G FEEA K M PN T
Sbjct: 208 AGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFT 267
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ Y G VDE+ F +K +G +P+V Y ++ + K +R+ +L+EM
Sbjct: 268 YNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMS 327
Query: 121 -----TNRIS--NIHQVTGQMIKGEFD------------------DESNWQMVEY----- 150
NR++ + V G+ +G D D N + Y
Sbjct: 328 RSGCTPNRVTWNTMLAVCGK--RGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGS 385
Query: 151 ------VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
++D++ G+ + YNALL L G A ++ + K G P
Sbjct: 386 RTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKP 438
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 96/207 (46%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFE--EAIKAYVEMEKVRCDPNER 59
G + Q+I+S+M ++G N S++ +++ + +GG E+I+ V + + P+
Sbjct: 419 GDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF--PSWV 476
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
L ++ ++ ++ FQE+K+ G P ++ + +LA+YAK+ + A + D +
Sbjct: 477 ILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSI 536
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +S ++ +W+ E + +L + YN ++ GL
Sbjct: 537 KQSGLSPDLITYNSLMDMYAKSNESWE-AEKILKQLKSSQVKPDVVSYNTVINGFCKQGL 595
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A R+L E G+ P + ++ LV
Sbjct: 596 IKEAQRILSEMIADGMAPCVVTYHTLV 622
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR-WDDAYGLLD 117
R VL AG + + + F E++ G++P+++ Y ++L VY + R W LL+
Sbjct: 90 RAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLE 149
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM + +I D Q V + F+ L G+ + YNALL+
Sbjct: 150 EMRAAGVEPDDFTASTVIAACGRDGLLDQAVAF-FEDLKARGHVPCVVTYNALLQVFGKA 208
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKL 205
G A RVL E G P+ +N+L
Sbjct: 209 GNYTEALRVLKEMEDSGCQPDAVTYNEL 236
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 1/171 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+ RM ++G N +++N + + RF ++ EM + C PN T
Sbjct: 279 GRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTW 338
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+V G+ D +KS G+ S Y L++ Y + A+ + DEM +
Sbjct: 339 NTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMIS 398
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
+ + ++ + +W + + K+ G+ + Y+ LL+
Sbjct: 399 SGFTPCLTTYNALLN-VLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQ 448
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY + + + +SG++ + ++N++++ + + EA K +++ + P+ +
Sbjct: 524 GLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSY 583
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
V++ +C GL+ E++ E+ + G+ P V+ Y L+ YA +++A +++ M H
Sbjct: 584 NTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIH 643
Query: 121 TN 122
N
Sbjct: 644 HN 645
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL KE Q ILS M G+A +++ ++ + F EA + M P E T
Sbjct: 594 GLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTY 653
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSS 87
V+ YC A DE++E EI +
Sbjct: 654 RRVVDSYCKAKRYDEAREFLSEISDT 679
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 11/198 (5%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G RN S+ +I + GR EA+K + +M + C P RT ++ +G
Sbjct: 255 MPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGR 314
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIH 128
E+ F E+K G P+V Y +L+ K N+ D+A +L EM + ++
Sbjct: 315 KVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNA 374
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ G +G DD + D + G R YN L+ L +A +L+
Sbjct: 375 LIDGYCKEGMIDDAFE------ILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLN 428
Query: 189 EATKRGLFPELFRHNKLV 206
+ +R L P L +N L+
Sbjct: 429 KMLERKLSPSLITYNSLI 446
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 1/198 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + + M+E ++ +I A GR EA+ + EM++ C+PN T
Sbjct: 277 AGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHT 336
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C +DE+++ E+ G++PSV+ Y L+ Y K DDA+ +LD M
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+N + ++I G + + +K+ + YN+L+ +
Sbjct: 397 SNSCGPNTRTYNELICG-LCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDL 455
Query: 181 ERAARVLDEATKRGLFPE 198
E A R+L + GL P+
Sbjct: 456 ESAYRLLSLMNENGLVPD 473
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 31/226 (13%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE +++++M GV ++ +I + G F+ A+K + M + P+ T A
Sbjct: 561 KEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAF 620
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----- 119
L Y G+++E + ++ GILP ++ Y +L+ YA+ A+ L M
Sbjct: 621 LHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGC 680
Query: 120 ---------------HTNRISNIHQVTGQMIKGEFDDESN---WQMVEYVFDKLNCEGYG 161
H NR+ G D SN +++ +F+K+ G
Sbjct: 681 KPSLYIVSILIKNLSHENRMKETRSEIG------IDSVSNTLEYEIALKLFEKMVEHGCT 734
Query: 162 LGMRFYNALLEALWCLGLR-ERAARVLDEATKRGLFPELFRHNKLV 206
+ + Y AL+ A +C R E A ++ +RG+ P +N L+
Sbjct: 735 IDVSIYGALI-AGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLL 779
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 34/232 (14%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L++M E ++ + ++N++I + E A + M + P++ T +
Sbjct: 425 ALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR-ISNI 127
C G V+E+ F +K+ G+ + + Y L+ Y K + D AY LL+ M + + N
Sbjct: 485 CKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNS 544
Query: 128 HQ---------------------------------VTGQMIKGEFDDESNWQMVEYVFDK 154
+ VT ++ GE + + VF+
Sbjct: 545 YTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNH 604
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ GY + Y A L A + G+ E V+ + + G+ P+L + L+
Sbjct: 605 MVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLI 656
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 104/228 (45%), Gaps = 8/228 (3%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + S++ ++G+ ++ ++ ++I + + A + ++ M + C NE + ++
Sbjct: 212 EAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLI 271
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI- 124
C AG ++E+ + F ++ P+V Y +L+ + S R +A L +EM
Sbjct: 272 HGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCE 331
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
N+H T +I G E+ + +++ +G + YNAL++ G+ + A
Sbjct: 332 PNVHTYT-VLIDG-LCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAF 389
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+LD P +N+L+ + R + A+++ LNKM E
Sbjct: 390 EILDLMESNSCGPNTRTYNELICGLCKKR----KVHKAMAL-LNKMLE 432
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 96/242 (39%), Gaps = 19/242 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + GV N + A+I+ + + G+ + A M C PN T
Sbjct: 488 GRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTY 547
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C + E+ ++ + G+ P+V+ Y +L+ K +D A + + M +
Sbjct: 548 NVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVS 607
Query: 122 --------NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
+ +H Q + E DD V K+N EG + Y L++
Sbjct: 608 LGYQPDVCTYTAFLHAYFSQGMLEEVDD---------VIAKMNEEGILPDLVTYTVLIDG 658
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVD-VHRMWEGGAYTAISVWLNKM-Y 231
LGL RA L G P L+ + L+ ++ +RM E + I N + Y
Sbjct: 659 YARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEY 718
Query: 232 EM 233
E+
Sbjct: 719 EI 720
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 79/186 (42%), Gaps = 11/186 (5%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N ++ + + +E Y+E+ + PN T A+++ YC G V E++ +I
Sbjct: 162 YNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIV 221
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGEFD 140
+G+ P Y L+ + ++ D+AY + M N +S + + G G +
Sbjct: 222 QAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRIN 281
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
+ +F + + +R Y L+ AL G + A + +E ++G P +
Sbjct: 282 EALK------LFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVH 335
Query: 201 RHNKLV 206
+ L+
Sbjct: 336 TYTVLI 341
>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 804
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 11/203 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
I +RM + N +F+ +I+ + G+ + A++ + EM + R PN+ T ++S
Sbjct: 182 GIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGL 241
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C A D + F +K G +P + Y LL + K R D+A GLL +R
Sbjct: 242 CQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDK 301
Query: 129 QVTGQMIKG-----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
Q +I G F+D W + K+ + Y +++ L G + A
Sbjct: 302 QGYSCLIDGLFRARRFEDAQVW------YRKMTEHNIKPDVILYTIMMKGLSKAGKFKDA 355
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
R+L+E T+RGL P+ +N L+
Sbjct: 356 LRLLNEMTERGLVPDTHCYNALI 378
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +K+ +L+ M+E G+ ++ +NA+I+ + G +EA ++E+ K C + T
Sbjct: 349 AGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACT 408
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C +GLV ++++ F E++ G PSV+ + L+ + K+ + A L +M
Sbjct: 409 YTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKME 468
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD------------KLNCEGYGLGMRFYN 168
R ++ Q D S MVE + D +L G+ + YN
Sbjct: 469 IGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYN 528
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L+ G A ++ E +GL P+ + L+
Sbjct: 529 ILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLI 566
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 90/216 (41%), Gaps = 14/216 (6%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ Q +M+E + + + +++ + G+F++A++ EM + P+ A
Sbjct: 317 FEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNA 376
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ YC GL+DE+K EI + S Y +L+ +S DA + +EM +
Sbjct: 377 LIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHG 436
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC-EGYGLGMRF------------YNAL 170
+I G F N + + +F K+ L +R +
Sbjct: 437 CYPSVVTFNALIDG-FCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTM 495
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+E L GL +A +L + T G P + +N L+
Sbjct: 496 VEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILI 531
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 15/151 (9%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP---- 56
GL + Q I + M + G + +FNA+I+ F + G E+A + +ME R +P
Sbjct: 419 SGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGR-NPSLFL 477
Query: 57 ----------NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
+ +L+ ++ C +GL+ ++ ++ SG P+++ Y +L+ + K+
Sbjct: 478 RLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKA 537
Query: 107 NRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ A+ L E+ +S G +I G
Sbjct: 538 GNINGAFKLFKELQLKGLSPDSVTYGTLING 568
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 6/223 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + G + ++D+F +I+A+ + E+A++++ M+ C P+ T VL V
Sbjct: 113 VLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMV 172
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+V + + + LP++ + +L+ KS + +A + DEM RI ++
Sbjct: 173 RKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILP-NK 231
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T +I + +F + G YNALL LG + A +L
Sbjct: 232 ITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKY 291
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
K + + +K +S + ++ + VW KM E
Sbjct: 292 FEK-----DRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTE 329
>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
Length = 793
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 3/188 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + A + G ++NA+++ F + G + EA++ EME C P+ T
Sbjct: 265 GLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTY 324
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ Y AG +E+ + + S G+LP+ Y ++ YA R D+A L D M
Sbjct: 325 NELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKK 384
Query: 122 N-RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + N++ T +I G +S + + + ++++ G +N +L G+
Sbjct: 385 NGYVPNVN--TYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGME 442
Query: 181 ERAARVLD 188
+ RVL+
Sbjct: 443 DYVTRVLN 450
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 91/204 (44%), Gaps = 2/204 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVE-MEKVRCDPNER 59
G Y+ + + + GV ++N V++ + + GR I A +E M +P++
Sbjct: 193 AGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDF 252
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T V++ GL+D++ F+++K+ G +P V+ Y LL V+ K+ + +A +L EM
Sbjct: 253 TASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEM 312
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ VT + G + ++ D + +G YN ++ A +G
Sbjct: 313 EDSGCQP-DAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGR 371
Query: 180 RERAARVLDEATKRGLFPELFRHN 203
+ A + D K G P + +N
Sbjct: 372 VDEALALFDRMKKNGYVPNVNTYN 395
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 108/267 (40%), Gaps = 43/267 (16%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y E +L M +SG ++ ++N + + + G FEEA K M PN T
Sbjct: 299 AGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFT 358
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ Y G VDE+ F +K +G +P+V Y ++ + K +R+ +L+EM
Sbjct: 359 YNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMS 418
Query: 121 -----TNRIS--NIHQVTGQMIKGEFD------------------DESNWQMVEY----- 150
NR++ + V G+ +G D D N + Y
Sbjct: 419 RSGCTPNRVTWNTMLAVCGK--RGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGS 476
Query: 151 ------VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
++D++ G+ + YNALL L G A ++ + K G F+ N
Sbjct: 477 RTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNG-----FKPND 531
Query: 205 LVWSVDVHRMWEGGAYTAISVWLNKMY 231
+S+ + +GG I ++Y
Sbjct: 532 QSYSLLLQCYAKGGNAAGIESIEKEVY 558
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 96/207 (46%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFE--EAIKAYVEMEKVRCDPNER 59
G + Q+I+S+M ++G N S++ +++ + +GG E+I+ V + + P+
Sbjct: 510 GDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF--PSWV 567
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
L ++ ++ ++ FQE+K+ G P ++ + +LA+YAK+ + A + D +
Sbjct: 568 ILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSI 627
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +S ++ +W+ E + +L + YN ++ GL
Sbjct: 628 KQSGLSPDLITYNSLMDMYAKSNESWE-AEKILKQLKSSQVKPDVVSYNTVINGFCKQGL 686
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A R+L E G+ P + ++ LV
Sbjct: 687 IKEAQRILSEMIADGMAPCVVTYHTLV 713
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR-WDDAYGLLD 117
R VL AG + + + F E++ G++P+++ Y ++L VY + R W LL+
Sbjct: 181 RAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLE 240
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM + +I D Q V + F+ L G+ + YNALL+
Sbjct: 241 EMRAAGVEPDDFTASTVIAACGRDGLLDQAVAF-FEDLKARGHVPCVVTYNALLQVFGKA 299
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKL 205
G A RVL E G P+ +N+L
Sbjct: 300 GNYTEALRVLKEMEDSGCQPDAVTYNEL 327
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY + + + +SG++ + ++N++++ + + EA K +++ + P+ +
Sbjct: 615 GLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSY 674
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
V++ +C GL+ E++ E+ + G+ P V+ Y L+ YA +++A +++ M H
Sbjct: 675 NTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIH 734
Query: 121 TN 122
N
Sbjct: 735 HN 736
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL KE Q ILS M G+A +++ ++ + F EA + M P E T
Sbjct: 685 GLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTY 744
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSS 87
V+ YC A DE++E EI +
Sbjct: 745 RRVVDSYCKAKRYDEAREFLSEISDT 770
>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Vitis vinifera]
Length = 666
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 6/203 (2%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ I S M + G+ N ++N +++A + R + A K VEM CDP+E +
Sbjct: 162 FQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTT 221
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++S C G V E++E + PSV Y L+ K +++A+ LLDEM N+
Sbjct: 222 LISSLCKLGKVKEAREL-----AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEM-MNK 275
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ + ++ I D N ++ V K+ G + + +L++ + G A
Sbjct: 276 GIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEA 335
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
D + G+ P + +N L+
Sbjct: 336 LDFWDRMIREGVVPNVVAYNALM 358
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 11/200 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM GV N ++NA++ +A+ + +ME C PN RT A++ Y AG
Sbjct: 341 RMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAG 400
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+D + E + + + G P+V+ Y ++ V +++ ++ AY L++ M
Sbjct: 401 DLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFN 460
Query: 133 QMIKGEF-DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER----AARVL 187
IKG +W + VFD++ G YN LL++L L++R A ++
Sbjct: 461 TFIKGLCGSGRVDWAI--KVFDQMGNSGCFPNTTTYNELLDSL----LKDRRFGEAFGLV 514
Query: 188 DEATKRGLFPELFRHNKLVW 207
+ RG+ L +N +++
Sbjct: 515 KDMEHRGIELNLVTYNTIIY 534
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 92/240 (38%), Gaps = 34/240 (14%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++E +L M G+ N S+ +I A G E ++ +M C PN T +
Sbjct: 262 FEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTS 321
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ + G E+ + + + G++P+V+ Y L+ DA + ++M N
Sbjct: 322 LIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEING 381
Query: 124 -ISNIHQ----VTGQMIKGEFDDES---NW--------QMVEY-----------VFDKLN 156
N+ + G G+ D S NW +V Y +F++
Sbjct: 382 CCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAY 441
Query: 157 C-------EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
C E +N ++ L G + A +V D+ G FP +N+L+ S+
Sbjct: 442 CLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSL 501
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 54/114 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M SG N+ ++N ++++ + RF EA +ME + N T ++ YC
Sbjct: 478 VFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYC 537
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
AG++ E+ E ++ G P + +++ Y K + + A L+D + +
Sbjct: 538 CAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGK 591
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 6/226 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
++ + ++ M N+ +FN I+ GR + AIK + +M C PN T
Sbjct: 436 MFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYN 495
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+L E+ ++++ GI +++ Y ++ Y + +A LL +M
Sbjct: 496 ELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVV- 554
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
R + +T ++ + + + + D+L+ + + Y +L+ + E
Sbjct: 555 RGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEE 614
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLN 228
A L G+ P N W+V V ++ ++ +L+
Sbjct: 615 AIVYLRRMLSEGISP-----NVATWNVLVRHLFSNMGHSGAVQFLD 655
>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
Length = 866
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 104/235 (44%), Gaps = 10/235 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV----RCDPN 57
GL +E + ++ RM G+A N +FNA I A + GR +A + + +M++ P+
Sbjct: 221 GLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPD 280
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
+ T + +LS +C AG VDE++ ++ G L V Y L+ ++ R +A LL
Sbjct: 281 QVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLR 340
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM I + T +I E V + + + Y +LL A
Sbjct: 341 EMAHEGIQP-NSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSK 399
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
G A R+LDE ++G P F +N L+ S +W G T L +M E
Sbjct: 400 GNIAAANRILDEMAQKGCAPNSFTYNVLLQS-----LWRAGRTTEAERLLERMNE 449
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 11/216 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
R+ ++ ARN SF + + + GR +A+K M + N V++ +C G
Sbjct: 166 RVFDAMPARNEFSFGILARGYCRAGRSIDALKVLDGMPSM----NLVVCNTVVAGFCKEG 221
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN---RISNIHQ 129
LV+E++ + ++ G+ P+V+ + ++ K+ R DAY + +M + + Q
Sbjct: 222 LVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQ 281
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT ++ F D + D + C G+ + YN L L G A +L E
Sbjct: 282 VTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLRE 341
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
G+ P + +N +V + EG A+ A V
Sbjct: 342 MAHEGIQPNSYTYNIIVSGL----CKEGKAFDARRV 373
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 97/229 (42%), Gaps = 24/229 (10%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIK---------------- 44
G E + +L RM+E G + ++ N +I+ + R + A+
Sbjct: 434 AGRTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRL 493
Query: 45 -----AYVEMEKV--RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC 97
+ V + RC P++ T ++S C G DE+K++ E+ I P + Y
Sbjct: 494 GNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYD 553
Query: 98 MLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC 157
+ Y K + A +L +M + + +I+G F+++ + + + ++
Sbjct: 554 TFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRG-FEEKHKSEEIMKLMSEMKE 612
Query: 158 EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G + YN+L+++ G+ +A +LDE + L P + + L+
Sbjct: 613 KGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQNELVPNITSFDLLI 661
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + L M ++ +S ++ I + + G+ AIK +MEK C+P+ RT
Sbjct: 528 GRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTY 587
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + +E + E+K GI P+VM Y L+ + + + A LLDEM
Sbjct: 588 NLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQ 647
Query: 122 NR-ISNIHQVTGQMIKGEFDDESNWQMVEYVFD 153
N + NI + ++ + +++ + VFD
Sbjct: 648 NELVPNI--TSFDLLIKAYCKITDFPSAQMVFD 678
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 84/230 (36%), Gaps = 47/230 (20%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + ++ M G R +S+N + + GR EA + EM PN T
Sbjct: 294 AGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYT 353
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S C G +++ I+S + P V+ Y LL Y A +LDEM
Sbjct: 354 YNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMA 413
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+G YN LL++LW G
Sbjct: 414 Q------------------------------------KGCAPNSFTYNVLLQSLWRAGRT 437
Query: 181 ERAARVLDEATKRG----------LFPELFRHNKLVWSVD-VHRMWEGGA 219
A R+L+ ++G + L R+++L ++D V MWE G+
Sbjct: 438 TEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGS 487
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 11/198 (5%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G RN S+ +I + GR EA+K + +M + C P RT ++ +G
Sbjct: 255 MPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGR 314
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIH 128
E+ F E+K G P+V Y +L+ K N+ D+A +L EM + ++
Sbjct: 315 KVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNA 374
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ G +G DD + D + G R YN L+ L +A +L+
Sbjct: 375 LIDGYCKEGMIDDAFE------ILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLN 428
Query: 189 EATKRGLFPELFRHNKLV 206
+ +R L P L +N L+
Sbjct: 429 KMLERKLSPSLITYNSLI 446
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 1/198 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + + M+E ++ +I A GR EA+ + EM++ C+PN T
Sbjct: 277 AGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHT 336
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C +DE+++ E+ G++PSV+ Y L+ Y K DDA+ +LD M
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+N + ++I G + + +K+ + YN+L+ +
Sbjct: 397 SNSCGPNTRTYNELICG-LCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDL 455
Query: 181 ERAARVLDEATKRGLFPE 198
E A R+L + GL P+
Sbjct: 456 ESAYRLLSLMNENGLVPD 473
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 42/237 (17%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE +++++M GV ++ +I + G F+ A+K + M + P+ T A
Sbjct: 561 KEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAF 620
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----- 119
L Y G+++E + ++ GILP ++ Y +L+ YA+ A+ L M
Sbjct: 621 LHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGC 680
Query: 120 ---------------HTNRISNIHQVTGQMIKGEFDDESN---------WQMVEY----- 150
H NR+ G D SN W+ +EY
Sbjct: 681 KPSLYIVSILIKNLSHENRMKETRSEIG------IDSVSNVNSVDIADVWKTLEYEIALK 734
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEATKRGLFPELFRHNKLV 206
+F+K+ G + + Y AL+ A +C R E A ++ +RG+ P +N L+
Sbjct: 735 LFEKMVEHGCTIDVSIYGALI-AGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLL 790
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 34/232 (14%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L++M E ++ + ++N++I + E A + M + P++ T +
Sbjct: 425 ALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR-ISNI 127
C G V+E+ F +K+ G+ + + Y L+ Y K + D AY LL+ M + + N
Sbjct: 485 CKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNS 544
Query: 128 HQ---------------------------------VTGQMIKGEFDDESNWQMVEYVFDK 154
+ VT ++ GE + + VF+
Sbjct: 545 YTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNH 604
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ GY + Y A L A + G+ E V+ + + G+ P+L + L+
Sbjct: 605 MVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLI 656
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 104/228 (45%), Gaps = 8/228 (3%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + S++ ++G+ ++ ++ ++I + + A + ++ M + C NE + ++
Sbjct: 212 EAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLI 271
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI- 124
C AG ++E+ + F ++ P+V Y +L+ + S R +A L +EM
Sbjct: 272 HGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCE 331
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
N+H T +I G E+ + +++ +G + YNAL++ G+ + A
Sbjct: 332 PNVHTYT-VLIDG-LCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAF 389
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+LD P +N+L+ + R + A+++ LNKM E
Sbjct: 390 EILDLMESNSCGPNTRTYNELICGLCKKR----KVHKAMAL-LNKMLE 432
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 17/207 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + GV N + A+I+ + + G+ + A M C PN T
Sbjct: 488 GRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTY 547
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C + E+ ++ + G+ P+V+ Y +L+ K +D A + + M +
Sbjct: 548 NVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVS 607
Query: 122 --------NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
+ +H Q + E DD V K+N EG + Y L++
Sbjct: 608 LGYQPDVCTYTAFLHAYFSQGMLEEVDD---------VIAKMNEEGILPDLVTYTVLIDG 658
Query: 174 LWCLGLRERAARVLDEATKRGLFPELF 200
LGL RA L G P L+
Sbjct: 659 YARLGLTHRAFDFLKCMVDTGCKPSLY 685
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 79/186 (42%), Gaps = 11/186 (5%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N ++ + + +E Y+E+ + PN T A+++ YC G V E++ +I
Sbjct: 162 YNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIV 221
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGEFD 140
+G+ P Y L+ + ++ D+AY + M N +S + + G G +
Sbjct: 222 QAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRIN 281
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
+ +F + + +R Y L+ AL G + A + +E ++G P +
Sbjct: 282 EALK------LFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVH 335
Query: 201 RHNKLV 206
+ L+
Sbjct: 336 TYTVLI 341
>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
[Oryza sativa Japonica Group]
gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 793
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 3/188 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + A + G ++NA+++ F + G + EA++ EME C P+ T
Sbjct: 265 GLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTY 324
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ Y AG +E+ + + S G+LP+ Y ++ YA R D+A L D M
Sbjct: 325 NELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKK 384
Query: 122 N-RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + N++ T +I G +S + + + ++++ G +N +L G+
Sbjct: 385 NGYVPNVN--TYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGME 442
Query: 181 ERAARVLD 188
+ RVL+
Sbjct: 443 DYVTRVLN 450
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 91/204 (44%), Gaps = 2/204 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVE-MEKVRCDPNER 59
G Y+ + + + GV ++N V++ + + GR I A +E M +P++
Sbjct: 193 AGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDF 252
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T V++ GL+D++ F+++K+ G +P V+ Y LL V+ K+ + +A +L EM
Sbjct: 253 TASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEM 312
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ VT + G + ++ D + +G YN ++ A +G
Sbjct: 313 EDSGCQP-DAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGR 371
Query: 180 RERAARVLDEATKRGLFPELFRHN 203
+ A + D K G P + +N
Sbjct: 372 VDEALALFDRMKKNGYVPNVNTYN 395
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 105/259 (40%), Gaps = 43/259 (16%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y E +L M +SG ++ ++N + + + G FEEA K M PN T
Sbjct: 299 AGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFT 358
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ Y G VDE+ F +K +G +P+V Y ++ + K +R+ +L+EM
Sbjct: 359 YNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMS 418
Query: 121 -----TNRIS--NIHQVTGQMIKGEFD------------------DESNWQMVEY----- 150
NR++ + V G+ +G D D N + Y
Sbjct: 419 RSGCTPNRVTWNTMLAVCGK--RGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGS 476
Query: 151 ------VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
++D++ G+ + YNALL L G A ++ + K G F+ N
Sbjct: 477 RTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNG-----FKPND 531
Query: 205 LVWSVDVHRMWEGGAYTAI 223
+S+ + +GG I
Sbjct: 532 QSYSLLLQCYAKGGNAAGI 550
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 96/207 (46%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFE--EAIKAYVEMEKVRCDPNER 59
G + Q+I+S+M ++G N S++ +++ + +GG E+I+ V + + P+
Sbjct: 510 GDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIF--PSWV 567
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
L ++ ++ ++ FQE+K+ G P ++ + +LA+YAK+ + A + D +
Sbjct: 568 ILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSI 627
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +S ++ +W+ E + +L + YN ++ GL
Sbjct: 628 KQSGLSPDLITYNSLMDMYAKSNESWE-AEKILKQLKSSQVKPDVVSYNTVINGFCKQGL 686
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A R+L E G+ P + ++ LV
Sbjct: 687 IKEAQRILSEMIADGMAPCVVTYHTLV 713
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR-WDDAYGLLD 117
R VL AG + + + F E++ G++P+++ Y ++L VY + R W LL+
Sbjct: 181 RAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLE 240
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM + +I D Q V + F+ L G+ + YNALL+
Sbjct: 241 EMRAAGVEPDDFTASTVIAACGRDGLLDQAVAF-FEDLKARGHVPCVVTYNALLQVFGKA 299
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKL 205
G A RVL E G P+ +N+L
Sbjct: 300 GNYTEALRVLKEMEDSGCQPDAVTYNEL 327
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY + + + +SG++ + ++N++++ + + EA K +++ + P+ +
Sbjct: 615 GLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSY 674
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
V++ +C GL+ E++ E+ + G+ P V+ Y L+ YA +++A +++ M H
Sbjct: 675 NTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIH 734
Query: 121 TN 122
N
Sbjct: 735 HN 736
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL KE Q ILS M G+A +++ ++ + F EA + M P E T
Sbjct: 685 GLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTY 744
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSS 87
V+ YC A DE++E EI +
Sbjct: 745 RRVVDSYCKAKRYDEAREFLSEISDT 770
>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 6/203 (2%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ I S M + G+ N ++N +++A + R + A K VEM CDP+E +
Sbjct: 162 FQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTT 221
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++S C G V E++E + PSV Y L+ K +++A+ LLDEM N+
Sbjct: 222 LISSLCKLGKVKEAREL-----AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEM-MNK 275
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ + ++ I D N ++ V K+ G + + +L++ + G A
Sbjct: 276 GIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEA 335
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
D + G+ P + +N L+
Sbjct: 336 LDFWDRMIREGVVPNVVAYNALM 358
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 11/200 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM GV N ++NA++ +A+ + +ME C PN RT A++ Y AG
Sbjct: 341 RMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAG 400
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+D + E + + + G P+V+ Y ++ V +++ ++ AY L++ M
Sbjct: 401 DLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFN 460
Query: 133 QMIKGEF-DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER----AARVL 187
IKG +W + VFD++ G YN LL++L L++R A ++
Sbjct: 461 TFIKGLCGSGRVDWAI--KVFDQMGNSGCFPNTTTYNELLDSL----LKDRRFGEAFGLV 514
Query: 188 DEATKRGLFPELFRHNKLVW 207
+ RG+ L +N +++
Sbjct: 515 KDMEHRGIELNLVTYNTIIY 534
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 92/240 (38%), Gaps = 34/240 (14%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++E +L M G+ N S+ +I A G E ++ +M C PN T +
Sbjct: 262 FEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTS 321
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ + G E+ + + + G++P+V+ Y L+ DA + ++M N
Sbjct: 322 LIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEING 381
Query: 124 -ISNIHQ----VTGQMIKGEFDDES---NW--------QMVEY-----------VFDKLN 156
N+ + G G+ D S NW +V Y +F++
Sbjct: 382 CCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAY 441
Query: 157 C-------EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
C E +N ++ L G + A +V D+ G FP +N+L+ S+
Sbjct: 442 CLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSL 501
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 54/114 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M SG N+ ++N ++++ + RF EA +ME + N T ++ YC
Sbjct: 478 VFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYC 537
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
AG++ E+ E ++ G P + +++ Y K + + A L+D + +
Sbjct: 538 CAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGK 591
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 6/226 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
++ + ++ M N+ +FN I+ GR + AIK + +M C PN T
Sbjct: 436 MFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYN 495
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+L E+ ++++ GI +++ Y ++ Y + +A LL +M
Sbjct: 496 ELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKM-VV 554
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
R + +T ++ + + + + D+L+ + + Y +L+ + E
Sbjct: 555 RGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEE 614
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLN 228
A L G+ P N W+V V ++ ++ +L+
Sbjct: 615 AIVYLRRMLSEGISP-----NVATWNVLVRHLFSNMGHSGAVQFLD 655
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 9/197 (4%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+S G + S+N ++ +F R+E+ + +M C+PN T ++S +C G
Sbjct: 262 LSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGR 321
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RISNIHQ 129
V E+ + +K G+ P Y L++ + K R D A L++M ++ I N +
Sbjct: 322 VREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNT 381
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ + K D + VF+KL+ G +R YN + ALW G + +A ++ E
Sbjct: 382 ILATLCKFGCAD-----LALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISE 436
Query: 190 ATKRGLFPELFRHNKLV 206
++G+ P+ +N L+
Sbjct: 437 MIRKGIDPDEITYNSLI 453
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG 88
+I+ F ++A++ +E+ + DP+ + A++S + A +D + + F ++S G
Sbjct: 103 LIKGFFNSRNLKKAMRV-MEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRG 161
Query: 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGEFDDES 143
P V+ Y +++ + + A+ ++DE+ + I+ + +++G ++
Sbjct: 162 FSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEAL 221
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+FD+L G + YNA++ + G+ +RA + + RG P++ +N
Sbjct: 222 E------LFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYN 275
Query: 204 KLVWSVDVHRMWEGG 218
L+ S WE G
Sbjct: 276 ILLRSFLNKSRWEDG 290
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 87/197 (44%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ RM G + + ++N +I + G+ E A + E+ K C P+ T ++
Sbjct: 153 VFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATI 212
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++E+ E F E+ S G+ P + Y ++ K D A + + + R N
Sbjct: 213 LEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHL-SARGCNPDV 271
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V+ ++ F ++S W+ E + + G + ++ L+ + G A VL+
Sbjct: 272 VSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEV 331
Query: 190 ATKRGLFPELFRHNKLV 206
++GL P+ + ++ L+
Sbjct: 332 MKEKGLTPDSYSYDPLI 348
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 89/200 (44%), Gaps = 1/200 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ + + G + ++ +IEA GR EA++ + E+ P+ T A++ C
Sbjct: 188 VMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGIC 247
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G+ D + + + + + G P V+ Y +LL + +RW+D L+ +M + +
Sbjct: 248 KEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEP-NV 306
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT ++ F E + V + + +G Y+ L+ A G + A L++
Sbjct: 307 VTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEK 366
Query: 190 ATKRGLFPELFRHNKLVWSV 209
G P++ +N ++ ++
Sbjct: 367 MVSDGCLPDIVNYNTILATL 386
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 1/184 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+NA+I F + + + A + + M P+ T ++ C G ++ + E E+
Sbjct: 133 SYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDEL 192
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G PSV+ Y +L+ R ++A L DE+ + + +I+G +
Sbjct: 193 LKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGME 252
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ +++V L+ G + YN LL + E R++ + G P + H+
Sbjct: 253 DRALDFV-RHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSI 311
Query: 205 LVWS 208
L+ S
Sbjct: 312 LISS 315
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 55/110 (50%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ ++ E G ++N + A G +A++ EM + DP+E T +++S C
Sbjct: 398 VFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLC 457
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
GLVDE+ +++++ P+V+ + ++L K++R + LL M
Sbjct: 458 RDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITM 507
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 35/157 (22%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L M E G+ +S S++ +I AF + GR + AI+ +M C P+
Sbjct: 320 GRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNY 379
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSNRW----------- 109
+L+ C G D + + F+++ G P+V Y M A+++ N+
Sbjct: 380 NTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIR 439
Query: 110 -----------------------DDAYGLLDEMHTNR 123
D+A GLL +M R
Sbjct: 440 KGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATR 476
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++S M G+ + ++N++I + G +EAI V+ME R P + VL C
Sbjct: 433 MISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMC 492
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
A V E E + G LP+ Y +L+
Sbjct: 493 KAHRVFEGIELLITMVEKGCLPNETSYVLLI 523
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + I+++M +SG ++ +FN +I A + EEA+ E+ PN T
Sbjct: 350 GELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTF 409
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G + F+E+KSSG P + Y +L+ S + A LL EM
Sbjct: 410 NILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEV 469
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G + E VFD+++ G G +N L++ L +
Sbjct: 470 SGCPQSTVTYNTIIDG-LCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERID 528
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
AA ++D+ GL P +N ++
Sbjct: 529 DAAELVDQMISEGLQPNNVTYNSIL 553
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 62/135 (45%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + + +M +G+ RN+ +FN +I+ R ++A + +M PN T ++
Sbjct: 493 EEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSI 552
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L+ YC G + ++ + Q + ++G V+ Y L+ K+ R A LL M +
Sbjct: 553 LTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGM 612
Query: 125 SNIHQVTGQMIKGEF 139
+ +I+ F
Sbjct: 613 KPTPKAYNPVIQSLF 627
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 2/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M SG +++ ++N +I+ + R EEA + + +M+ N T ++ C
Sbjct: 463 LLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLC 522
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A +D++ E ++ S G+ P+ + Y +L Y K A +L M N +
Sbjct: 523 NAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFE-VDV 581
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT + Q + + +G + YN ++++L+ A + E
Sbjct: 582 VTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFRE 641
Query: 190 ATKRGLFPELFRHNKLVW 207
T+ G P+ F + K+V+
Sbjct: 642 MTEVGGPPDAFTY-KIVF 658
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 34/231 (14%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L MS VA + +F ++E F + G E A++ M ++ C P T+ +++ YC
Sbjct: 218 MLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYC 277
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---------- 119
G V ++ Q+ + G P + + + ++ D A +L M
Sbjct: 278 KLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVY 337
Query: 120 ----------HTNRISNIHQVTGQMI-KGEFDDESNWQM----------VEYVFD---KL 155
+ + + QM+ G D + + +E D +L
Sbjct: 338 TYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLAREL 397
Query: 156 NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G + +N L+ AL +G A R+ +E G P+ +N L+
Sbjct: 398 TVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILI 448
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 77/183 (42%), Gaps = 3/183 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+F+ + Q G + A+K M + C+P+ T V++ C G ++E+K ++
Sbjct: 303 TFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQM 362
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIHQVTGQMIKGEFDDES 143
SG LP + L+ N+ ++A L E+ +S N++ T ++
Sbjct: 363 VDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVY--TFNILINALCKVG 420
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+ + +F+++ G YN L++ L G +A +L E G +N
Sbjct: 421 DPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYN 480
Query: 204 KLV 206
++
Sbjct: 481 TII 483
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 84/221 (38%), Gaps = 11/221 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K ++ + MS G+ + +FN VI+A + + A+ EM P+E T
Sbjct: 174 GSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETT 233
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG-----L 115
++ + G ++ + + G P+ + +L+ Y K R DA G +
Sbjct: 234 FTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEI 293
Query: 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
D +R++ V G G D V + EG + Y+ ++ L
Sbjct: 294 ADGFEPDRVTFSTFVNGLCQNGHVDHALK------VLGLMLQEGCEPDVYTYSTVINCLC 347
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
G E A ++++ G P+ N L+ ++ E
Sbjct: 348 NNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLE 388
>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 6/223 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I +M E ++ ++ A + GR EAI + EM + C+PN T +++ C
Sbjct: 61 IFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMC 120
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
++E + E+ G++PSV Y L+ Y K + A +LD MH+N + +
Sbjct: 121 KETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNER 180
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++I G F + N + K+ + YN+L+ +G + A R+L+
Sbjct: 181 TYNELICG-FCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNL 239
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ G+ P+ + +SV + + + G +V N + E
Sbjct: 240 MNENGVVPD-----QWTYSVFIDTLCKKGRIEEANVLFNSLKE 277
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 1/202 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + IL M E G+ + ++NA+I+ + + G E A + M C+PNERT +
Sbjct: 126 EEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNEL 185
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ +C V + ++ S + PSV+ Y L+ K D AY LL+ M+ N +
Sbjct: 186 ICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGV 245
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
Q T + + + +F+ L +G Y AL++ G + A
Sbjct: 246 VP-DQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDAN 304
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+LD P +N L+
Sbjct: 305 SLLDRMLTEDCLPNSSTYNALI 326
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 83/198 (41%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ + M + G RN S+ +I + GR +E I + +M + C P RT ++
Sbjct: 25 SVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHAL 84
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+G E+ F E++ G P++ Y +++ K + ++ +LDEM +
Sbjct: 85 FESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSV 144
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+I G + E + + + D ++ R YN L+ RA +L
Sbjct: 145 PTYNALIDG-YCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLS 203
Query: 189 EATKRGLFPELFRHNKLV 206
+ + L P + +N L+
Sbjct: 204 KMLESRLTPSVVTYNSLI 221
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 85/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M+E+GV + +++ I+ + GR EEA + +++ NE A++ YC
Sbjct: 236 LLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYC 295
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +D++ + + LP+ Y L+ K + +A L++ M +
Sbjct: 296 KAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVP 355
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I E ++ + D++ GY + Y A + A G + A ++
Sbjct: 356 TYTILIVAML-KEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSM 414
Query: 190 ATKRGLFPELFRHNKLV 206
+RG+ P+ + ++
Sbjct: 415 MFERGVMPDALTYTLVI 431
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + + E G+ N + A+I+ + + G+ ++A M C PN T
Sbjct: 263 GRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTY 322
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ C V E+ + + G+ +V Y +L+ K +D A+ +LD+M
Sbjct: 323 NALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQM 380
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 7/177 (3%)
Query: 42 AIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101
A + M K C NE + ++ C G VDE F++++ P+V Y +++
Sbjct: 23 AFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVH 82
Query: 102 VYAKSNRWDDAYGLLDEMHTNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160
+S R +A L EM NIH T ++ E+ + + D++ +G
Sbjct: 83 ALFESGRRMEAINLFSEMRERGCEPNIHTYT--VMINAMCKETKLEEGRRILDEMVEKGL 140
Query: 161 GLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV----DVHR 213
+ YNAL++ G+ E A +LD P +N+L+ +VHR
Sbjct: 141 VPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHR 197
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 7/204 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + ++S M E GV ++ ++ VI+A+ G A M CDP+ T
Sbjct: 403 GNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTY 462
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ L +E ++++ + +P+V + +A K +++ A L ++M
Sbjct: 463 SCLIKHL----LKEELTKKYKNVALCDSIPNV--FFADVADVWKMMKFETALELFEKMLE 516
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ S ++I G + + +FD +N G YN+LL LG+
Sbjct: 517 HGCSPNINTYAKLIIG-LCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYG 575
Query: 182 RAARVLDEATKRGLFPELFRHNKL 205
A R++ + G P L N L
Sbjct: 576 DAVRLVGAMMEHGHLPLLESLNVL 599
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 28/230 (12%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E ++ M + G+ ++ +I A + G F+ A + +M P+ A
Sbjct: 336 QEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAF 395
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ +C G + E+++ + G++P + Y +++ Y + A+ +L M
Sbjct: 396 IHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGC 455
Query: 125 SNIHQVTGQMIKGEFDDESN-----------------------WQMVEY-----VFDKLN 156
H +IK +E W+M+++ +F+K+
Sbjct: 456 DPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKML 515
Query: 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + Y L+ L +G A ++ D +RG+ P +N L+
Sbjct: 516 EHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLL 565
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 3/166 (1%)
Query: 38 RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC 97
+FE A++ + +M + C PN T ++ C G + +++ F + G+ PS Y
Sbjct: 503 KFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYN 562
Query: 98 MLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC 157
LL + + DA L+ M + + + + G + +E + + + VF L
Sbjct: 563 SLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLY-EEGSKEKAKVVFSNLLQ 621
Query: 158 EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG--LFPELFR 201
GY + L++ L GL + + +L RG + P+ +R
Sbjct: 622 CGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYR 667
>gi|356557981|ref|XP_003547288.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 706
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 120/266 (45%), Gaps = 33/266 (12%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERTLEAVLSVY 68
+ M E G + +N + + G +EA+K + M+ C P+ T +++++Y
Sbjct: 378 VYKEMKEKGKDLDILLYNMLFDMCANVGCVDEAVKIFEHMKSSGTCPPDSFTYASLINMY 437
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN-- 126
G + E + F E+ SG P+++ L+ Y K+ R DD + +++ IS
Sbjct: 438 SSIGKILEMEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLGISPDG 497
Query: 127 ------IHQVTGQMIKGEFD------DESNWQM---VEYVFDK--------------LNC 157
++ +T Q+ K E +++N ++ + Y+ +K N
Sbjct: 498 RFCDCLLYAMT-QVPKEELGKLSGCVEKANPKLGSVLRYIMEKQEGGGDFRTEASELFNS 556
Query: 158 EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEG 217
+ N L++ L + +RA +LD ++P++ ++ WS+ + R+ G
Sbjct: 557 TEADVKKSMCNCLIDLCVSLDVPDRARDLLDLGLTLEIYPDIQSRSQAKWSLHLKRLSVG 616
Query: 218 GAYTAISVWLNKMYEMFMMGEDLPQL 243
A TA+SVW++ + + +GE+LP L
Sbjct: 617 AALTALSVWISDLSKALELGEELPPL 642
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 82/201 (40%), Gaps = 6/201 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y C + + M G N ++NA++ A + R +A Y EM PN T
Sbjct: 299 SGNYVGCLNVYNDMKVLGAKPNLTTYNALLYAMGRAKRARDAKAIYGEMISNGLSPNWPT 358
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L YC A ++ ++E+K G ++ Y ML + A D+A + + M
Sbjct: 359 YAALLQAYCRARFNRDALNVYKEMKEKGKDLDILLYNMLFDMCANVGCVDEAVKIFEHMK 418
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ T + + +E +F+++ G+ + +L+ C G
Sbjct: 419 SSGTCPPDSFTYASLINMYSSIGKILEMEAMFNEMMESGFEPNIIVLTSLVH---CYGKA 475
Query: 181 ERA---ARVLDEATKRGLFPE 198
+R ++ ++ G+ P+
Sbjct: 476 KRTDDVVKIFNQLMDLGISPD 496
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 3/173 (1%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N ++ FR+ FE A K + EM +PN T ++S L ++ + F+ +
Sbjct: 184 YNVTLKLFRKVKDFEGAEKLFDEMLHRGVNPNLITFSTMISCASVCSLPHKAVKWFEMMP 243
Query: 86 SSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S G P + +C M+ A Y ++ D A L D + V +IK + N
Sbjct: 244 SFGCEPDNNVCSSMIYA-YTRTGNTDMALRLYDRAKAGKWHVDTAVFSGLIK-MYGVSGN 301
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ V++ + G + YNALL A+ A + E GL P
Sbjct: 302 YVGCLNVYNDMKVLGAKPNLTTYNALLYAMGRAKRARDAKAIYGEMISNGLSP 354
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
F+ +I+ + G + + Y +M+ + PN T A+L A ++K + E+
Sbjct: 289 FSGLIKMYGVSGNYVGCLNVYNDMKVLGAKPNLTTYNALLYAMGRAKRARDAKAIYGEMI 348
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
S+G+ P+ Y LL Y ++ DA + EM
Sbjct: 349 SNGLSPNWPTYAALLQAYCRARFNRDALNVYKEM 382
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 9/186 (4%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N ++ A G++EE K +M +CDPN T +++ C G ++E+ + +
Sbjct: 300 SYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLM 359
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RISNIHQVTGQMIKGEFD 140
K G+ P Y L+A + + R D A L+ M ++ I N + V + K
Sbjct: 360 KEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKA 419
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
D Q +E +F KL G YN + ALW G + RA ++ E G+ P+
Sbjct: 420 D----QALE-IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEI 474
Query: 201 RHNKLV 206
+N ++
Sbjct: 475 TYNSMI 480
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I ++ E G + NS S+N + A G A+ +EM DP+E T +++S C
Sbjct: 425 IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLC 484
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
G+VDE+ E +++S PSV+ Y ++L + K++R +DA +L+ M N
Sbjct: 485 REGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGN 537
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 91 PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150
P V Y L+ + K NR DDA +LD M + S VT ++ G +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSP-DTVTYNIMIGSLCSRGKLDLALK 214
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V ++L + + Y L+EA G + A +++DE RGL P++F +N ++
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTII 270
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 86/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM + ++ ++N +I + G+ + A+K ++ C P T ++
Sbjct: 180 VLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATM 239
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VDE+ + E+ S G+ P + Y ++ K D A+ ++ + + S
Sbjct: 240 LEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLEL-KGSEPDV 298
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ ++ ++ W+ E + K+ E + Y+ L+ L G E A +L
Sbjct: 299 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKL 358
Query: 190 ATKRGLFPELFRHNKLV 206
++GL P+ + ++ L+
Sbjct: 359 MKEKGLTPDAYSYDPLI 375
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 12/197 (6%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++NA+I F + R ++A + M P+ T ++ C G +D + + ++
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S P+V+ Y +L+ D+A L+DEM + + +I+G +
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE--- 276
Query: 145 WQMVEYVFD---KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
MV+ F+ L +G + YN LL AL G E +++ + +F E
Sbjct: 277 -GMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTK-----MFSEKCD 330
Query: 202 HNKLVWSVDVHRMWEGG 218
N + +S+ + + G
Sbjct: 331 PNVVTYSILITTLCRDG 347
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 79/185 (42%), Gaps = 1/185 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +IEA G +EA+K EM P+ T ++ C G+VD + E + +
Sbjct: 230 TYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNL 289
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ G P V+ Y +LL +W++ L+ +M + + + + VT ++ +
Sbjct: 290 ELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK-CDPNVVTYSILITTLCRDGK 348
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + +G Y+ L+ A G + A L+ G P++ +N
Sbjct: 349 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNT 408
Query: 205 LVWSV 209
++ ++
Sbjct: 409 VLATL 413
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 9/186 (4%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N ++ A G++EE K +M +CDPN T +++ C G ++E+ + +
Sbjct: 300 SYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLM 359
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RISNIHQVTGQMIKGEFD 140
K G+ P Y L+A + + R D A L+ M ++ I N + V + K
Sbjct: 360 KEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKA 419
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
D Q +E +F KL G YN + ALW G + RA ++ E G+ P+
Sbjct: 420 D----QALE-IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEI 474
Query: 201 RHNKLV 206
+N ++
Sbjct: 475 TYNSMI 480
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I ++ E G + NS S+N + A G A+ +EM DP+E T +++S C
Sbjct: 425 IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLC 484
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
G+VDE+ E +++S PSV+ Y ++L + K++R +DA +L+ M N
Sbjct: 485 REGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGN 537
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 91 PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150
P V Y L+ + K NR DDA +LD M + S VT ++ G +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSP-DTVTYNIMIGSLCSRGKLDLALK 214
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V ++L + + Y L+EA G + A +++DE RGL P++F +N ++
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTII 270
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 85/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM + ++ ++N +I + G+ + A+K ++ C P T ++
Sbjct: 180 VLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATM 239
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VDE+ + E+ S G+ P + Y ++ K D A+ ++ + +
Sbjct: 240 LEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLEL-KGCEPDV 298
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ ++ ++ W+ E + K+ E + Y+ L+ L G E A +L
Sbjct: 299 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKL 358
Query: 190 ATKRGLFPELFRHNKLV 206
++GL P+ + ++ L+
Sbjct: 359 MKEKGLTPDAYSYDPLI 375
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 79/185 (42%), Gaps = 1/185 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +IEA G +EA+K EM P+ T ++ C G+VD + E + +
Sbjct: 230 TYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNL 289
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ G P V+ Y +LL +W++ L+ +M + + + + VT ++ +
Sbjct: 290 ELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK-CDPNVVTYSILITTLCRDGK 348
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + +G Y+ L+ A G + A L+ G P++ +N
Sbjct: 349 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNT 408
Query: 205 LVWSV 209
++ ++
Sbjct: 409 VLATL 413
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 12/197 (6%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++NA+I F + R ++A + M P+ T ++ C G +D + + ++
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S P+V+ Y +L+ D+A L+DEM + + +I+G +
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE--- 276
Query: 145 WQMVEYVFD---KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
MV+ F+ L +G + YN LL AL G E +++ + +F E
Sbjct: 277 -GMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTK-----MFSEKCD 330
Query: 202 HNKLVWSVDVHRMWEGG 218
N + +S+ + + G
Sbjct: 331 PNVVTYSILITTLCRDG 347
>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
Length = 724
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 1/216 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E +AI + E G+ + ++NA+++ + + G ++A EME+ P+E T
Sbjct: 375 AGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHT 434
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y AG + ++ +E+++SG+ P+ + +LA Y +W ++ +L EM
Sbjct: 435 YSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMR 494
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +S MI F + FD++ EG +N L++ G
Sbjct: 495 NSGVSPDRHFYNVMID-TFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHH 553
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+A + + + G P +N ++ S WE
Sbjct: 554 NKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWE 589
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + L+ + +G++ + + AVI A GR EEA + E+++ P R
Sbjct: 340 SGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRA 399
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L Y G + +++ E++ SG P Y +L+ YA + RW+ A +L EM
Sbjct: 400 YNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEME 459
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + V +++ + D WQ V ++ G FYN +++
Sbjct: 460 ASGVRPNSYVFSRIL-ASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCL 518
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A D G+ P+ N L+
Sbjct: 519 DHALATFDRMRMEGVQPDAVTWNTLI 544
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 1/199 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q I + + + + N +I F + G A+ ++ P TL AV++
Sbjct: 312 QKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITA 371
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
AG +E++ F+E+K G++P Y LL Y K+ DA ++ EM + S
Sbjct: 372 LGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPD 431
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+I + + W+ V ++ G ++ +L + G +++ +VL
Sbjct: 432 EHTYSLLIDA-YANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVL 490
Query: 188 DEATKRGLFPELFRHNKLV 206
E G+ P+ +N ++
Sbjct: 491 REMRNSGVSPDRHFYNVMI 509
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + + M ESG + + ++N +I +F + R+E+ +M+ +
Sbjct: 550 SGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQ-------SQG 602
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
L A + Y GL +++ F+ +++ G+ PSV+ L+ + + R +A+ +L M
Sbjct: 603 LLANVVTYTTLGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMK 662
Query: 121 TN 122
N
Sbjct: 663 EN 664
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 1/192 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ L M E+G ++ ++ A I + + G F A K EM + PN+ ++
Sbjct: 508 EARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLI 567
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ YC G V E+ F+ + GIL Y +L+ K+ + +DA + EM I+
Sbjct: 568 NEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIA 627
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G +I G F N Q +FD++ G + YN LL G E+A
Sbjct: 628 PDVFSYGTLIDG-FSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKE 686
Query: 186 VLDEATKRGLFP 197
+LDE + +G P
Sbjct: 687 LLDEMSGKGFPP 698
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + M E GV N +I + + G+ EA A+ M + + +T
Sbjct: 538 AGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKT 597
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+++ G V++++E F E++ GI P V Y L+ ++K A + DEM
Sbjct: 598 YTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMV 657
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
SN+ + M+ G F + + + D+++ +G+ Y +++ G
Sbjct: 658 QAGLTSNV--IIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGD 715
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
A ++ DE +GL P+ F + LV
Sbjct: 716 LAEAFQLFDEMKLKGLVPDSFVYTTLV 742
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 102/237 (43%), Gaps = 7/237 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + I M G+A + S+ +I+ F + G ++A + EM + N
Sbjct: 609 GKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIY 668
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L +C +G ++++KE E+ G P+ + YC ++ Y KS +A+ L DEM
Sbjct: 669 NMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKL 728
Query: 122 NRISNIHQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ V ++ G +D + +F+ N +G +NAL+ ++ G
Sbjct: 729 KGLVPDSFVYTTLVDGCCRLND---VERAITIFET-NEKGCASSSAPFNALINWVFKFGK 784
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMM 236
E +++ G F + + N + +++ + + + G A + M + +M
Sbjct: 785 TELTTDMINRLMD-GSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLM 840
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 104/267 (38%), Gaps = 42/267 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +I M ++G+ N +N ++ F + G E+A + EM PN T
Sbjct: 644 GNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTY 703
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD---- 117
++ YC +G + E+ + F E+K G++P Y L+ + N + A + +
Sbjct: 704 CTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEK 763
Query: 118 ----------------------EMHTNRISNI-----------HQVTGQMIKGEFDDESN 144
E+ T+ I+ + + VT ++ E N
Sbjct: 764 GCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGN 823
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + +F + + Y +LL +G R V DE G+ P+
Sbjct: 824 LEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPD-----N 878
Query: 205 LVWSVDVHRMWEGGAYTAISVWLNKMY 231
+++SV ++ + G T V L++M+
Sbjct: 879 IMYSVIINAFLKEGMTTKALVLLDQMF 905
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 10/193 (5%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD----PNERTLEAVLSVYCF 70
+E G A +S FNA+I + G+ E + D PN+ T ++ C
Sbjct: 761 NEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCK 820
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G ++ +KE F ++ + ++P+V+ Y LL Y K R + + + DE+ I +
Sbjct: 821 EGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEP-DNI 879
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNC-----EGYGLGMRFYNALLEALWCLGLRERAAR 185
+I F E + D++ +G L + ALL +G E A +
Sbjct: 880 MYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEK 939
Query: 186 VLDEATKRGLFPE 198
V++ + P+
Sbjct: 940 VVENMVRLKYIPD 952
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 104/241 (43%), Gaps = 14/241 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +A+ M GV + ++ ++IE F + + + VE++K + T
Sbjct: 364 GAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTY 423
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ C +G +D + +E+ +SG P+V+ Y L+ + + +R+ DA +L EM
Sbjct: 424 GTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMRE 483
Query: 122 NRISNIHQVTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
I+ +I K + DE+ ++E V + + + G F + +EA
Sbjct: 484 QGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGA-FISGYIEA---- 538
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMG 237
G A + + E + G+ P NK++ + ++ + G M E ++G
Sbjct: 539 GEFASADKYVKEMLECGVIP-----NKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILG 593
Query: 238 E 238
+
Sbjct: 594 D 594
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRISNIH 128
VDE+ E + + G++PS Y +L+ K R +DA LL EM++ + ++
Sbjct: 261 VDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSI 320
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ G ++KG D +N + E V G+ + Y+ + + G E+A + D
Sbjct: 321 LIDG-LLKGRNADAANGLVHEMV-----SHGFSIDPMMYDYFICVMSKEGAMEKAKALFD 374
Query: 189 EATKRGLFP 197
G+ P
Sbjct: 375 GMITFGVTP 383
>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++GV N ++N+++ + G+ +EAI +M +P+ T +++ C
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + +GLLD M N I H
Sbjct: 316 KNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 375
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I + + VF K+ +G Y ++ L G E A R ++
Sbjct: 376 VFSILICA-YAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQ 434
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
L P +N L+ S+ + W+
Sbjct: 435 MIDERLSPGNIVYNSLIHSLCIFDKWD 461
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 95/199 (47%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNERTLEAVLSV 67
+L RM++ G N S+N +++ R +EA++ M + C P+ + V++
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ G +D++ + E+ GILP+V+ Y ++A K+ D A +L M N +
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ ++ G + + ++ K++ +G + YN+L++ L G A ++
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFL-KKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327
Query: 188 DEATKRGLFPELFRHNKLV 206
D TKRGL PE+ + L+
Sbjct: 328 DSMTKRGLKPEITTYGTLL 346
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 1/182 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + ++ M + G+ ++ FN++I++ + GR E+ K + M ++ P+ T ++
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
YC AG +DE+ + + S G+ P + Y L+ Y K +R +DA L EM ++ +S
Sbjct: 522 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVS 581
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+++G F E ++ + G L + YN +L L L + A R
Sbjct: 582 PDIITYNIILQGLFQTRRTAAAKE-LYVGITESGTQLELSTYNIILHGLCKNNLTDEALR 640
Query: 186 VL 187
+
Sbjct: 641 MF 642
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV + ++N++++ + GR EA K + M K P T
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P+ + +L+ YAK + D A + +M
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N VT + G + F+++ E G YN+L+ +L +
Sbjct: 403 QGL-NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWD 461
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
+A ++ E RG+ + N ++ S
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDS 488
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/207 (18%), Positives = 89/207 (42%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + M++ G+ ++ +++ + G E M + PN
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G VD++ F +++ G+ P + Y ++ + KS R +DA ++M
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437
Query: 122 NRISNIHQVTGQMIKGE--FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
R+S + V +I FD W + + ++ G L F+N+++++ G
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFD---KWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGR 494
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ ++ D + G+ P++ ++ L+
Sbjct: 495 VIESEKLFDLMVRIGVKPDIITYSTLI 521
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 89/217 (41%), Gaps = 19/217 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + S+M + G+ ++ ++ VI + GR E+A++ + +M R P
Sbjct: 388 GKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVY 447
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+++ C D++KE E+ GI + + ++ + K R ++ L D M
Sbjct: 448 NSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVR 507
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR----FYNALLE 172
+ I+ + G + G+ D+ + KL +GM+ YN L+
Sbjct: 508 IGVKPDIITYSTLIDGYCLAGKMDEAT----------KLLASMVSVGMKPDCVTYNTLIN 557
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ E A + E G+ P++ +N ++ +
Sbjct: 558 GYCKISRMEDALVLFREMESSGVSPDIITYNIILQGL 594
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 13/180 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +L+ M G+ + ++N +I + + R E+A+ + EME P+ T
Sbjct: 527 AGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT 586
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA------YG 114
+L +KE + I SG + Y ++L K+N D+A
Sbjct: 587 YNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 646
Query: 115 LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
L D R NI + G ++K +DE+ + +F L+ G +R Y+ + E L
Sbjct: 647 LTDLQLETRTFNI--MIGALLKVGRNDEA-----KDLFAALSANGLVPDVRTYSLMAENL 699
>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
Length = 625
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N +I+A+ Q +++A Y+E+ + RC P E T +L YC +GL+++++ F E++
Sbjct: 209 YNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMR 268
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
G PS + Y + K A + + M +R T M+ + S
Sbjct: 269 KYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQP-STATYTMLINLYGKASKS 327
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
M VF ++ + + + AL+ A GL E+A + ++ + GL P+++ +N L
Sbjct: 328 YMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNAL 387
Query: 206 V 206
+
Sbjct: 388 M 388
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 96/198 (48%), Gaps = 1/198 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + I ++ E+G+ + ++NA++EA+ + G A + + M+ + C+P+ +
Sbjct: 360 GLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASY 419
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y AGL ++++ F+ +K GI P++ + +LL+ Y+++ + ++++MH
Sbjct: 420 NIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHK 479
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I V M+ + ++ +E V + Y + YN L+ G
Sbjct: 480 SGIKPDTFVLNSMLN-LYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFA 538
Query: 182 RAARVLDEATKRGLFPEL 199
R + R L P++
Sbjct: 539 RMEELFRSLPARNLIPDV 556
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 95/211 (45%), Gaps = 11/211 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ I RM ++ ++ +I + + + A+K + EM +C PN T
Sbjct: 289 GGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICT 348
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA---YGLLD 117
A+++ + GL ++++E F++++ +G+ P V Y L+ Y+++ A + L+
Sbjct: 349 FTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQ 408
Query: 118 EM--HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
M +R S V G +D + VF+ + G M+ + LL A
Sbjct: 409 HMGCEPDRASYNIMVDAYGRAGLHED------AQAVFEVMKRLGITPTMKSHMLLLSAYS 462
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + ++++ K G+ P+ F N ++
Sbjct: 463 RAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 493
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 91/201 (45%), Gaps = 1/201 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ +A+ + M + G ++ +NA I+ +GG ++A++ + M++ RC P+ T
Sbjct: 255 GLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 314
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++Y A + + F E++S P++ + L+ +A+ + A + +++
Sbjct: 315 TMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE 374
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +++ + E +F + G YN +++A GL E
Sbjct: 375 AGLEPDVYAYNALMEAYSRAGFPYGAAE-IFSLMQHMGCEPDRASYNIMVDAYGRAGLHE 433
Query: 182 RAARVLDEATKRGLFPELFRH 202
A V + + G+ P + H
Sbjct: 434 DAQAVFEVMKRLGITPTMKSH 454
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 62/119 (52%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +C+ I+++M +SG+ ++ N+++ + + G+FE+ + MEK + T
Sbjct: 464 AGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADIST 523
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++++Y AG +E F+ + + ++P V+ + + Y++ +++ + +EM
Sbjct: 524 YNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEM 582
>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial [Vitis vinifera]
gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 1/216 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E +AI + E G+ + ++NA+++ + + G ++A EME+ P+E T
Sbjct: 304 AGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHT 363
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y AG + ++ +E+++SG+ P+ + +LA Y +W ++ +L EM
Sbjct: 364 YSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMR 423
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +S MI F + FD++ EG +N L++ G
Sbjct: 424 NSGVSPDRHFYNVMID-TFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHH 482
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+A + + + G P +N ++ S WE
Sbjct: 483 NKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWE 518
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + L+ + +G++ + + AVI A GR EEA + E+++ P R
Sbjct: 269 SGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRA 328
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L Y G + +++ E++ SG P Y +L+ YA + RW+ A +L EM
Sbjct: 329 YNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEME 388
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + V +++ + D WQ V ++ G FYN +++
Sbjct: 389 ASGVRPNSYVFSRIL-ASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCL 447
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A D G+ P+ N L+
Sbjct: 448 DHALATFDRMRMEGVQPDAVTWNTLI 473
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 1/199 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q I + + + + N +I F + G A+ ++ P TL AV++
Sbjct: 241 QKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITA 300
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
AG +E++ F+E+K G++P Y LL Y K+ DA ++ EM + S
Sbjct: 301 LGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPD 360
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+I + + W+ V ++ G ++ +L + G +++ +VL
Sbjct: 361 EHTYSLLIDA-YANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVL 419
Query: 188 DEATKRGLFPELFRHNKLV 206
E G+ P+ +N ++
Sbjct: 420 REMRNSGVSPDRHFYNVMI 438
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 65/121 (53%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ + +L +M G+ N ++ +++ + Q GRF++AI+ M+ V P+ A
Sbjct: 517 WEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNA 576
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ Y GL +++ F+ +++ G+ PSV+ L+ + + R +A+ +L M N
Sbjct: 577 LINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKEND 636
Query: 124 I 124
+
Sbjct: 637 L 637
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 57/113 (50%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A RM GV ++ ++N +I+ + G +A + + M++ C P T +++ +
Sbjct: 452 ATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSF 511
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ K +++S G+L +V+ Y L+ +Y +S R+ DA L+ M +
Sbjct: 512 GEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKS 564
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 82/198 (41%), Gaps = 1/198 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + + M ESG + + ++N +I +F + R+E+ +M+ N T
Sbjct: 479 SGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVT 538
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ +Y +G ++ E + +KS G+ PS Y L+ YA+ + A M
Sbjct: 539 YTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMR 598
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + V +I +D + + V + + Y L++AL +
Sbjct: 599 ADGLKPSVLVLNSLINAFGEDRRDAEAFS-VLQYMKENDLKPDVVTYTTLMKALIRVEKF 657
Query: 181 ERAARVLDEATKRGLFPE 198
++ V +E T G P+
Sbjct: 658 DKVPAVYEEMTLSGCTPD 675
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++GV N ++N+++ + G+ +EAI +M +P+ T +++ C
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + +GLLD M N I H
Sbjct: 316 KNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 375
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I + + VF K+ +G Y ++ L G E A R ++
Sbjct: 376 VFSILICA-YAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQ 434
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
L P +N L+ S+ + W+
Sbjct: 435 MIDERLSPGNIVYNSLIHSLCIFDKWD 461
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 95/199 (47%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNERTLEAVLSV 67
+L RM++ G N S+N +++ R +EA++ M + C P+ + V++
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ G +D++ + E+ GILP+V+ Y ++A K+ D A +L M N +
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ ++ G + + ++ K++ +G + YN+L++ L G A ++
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFL-KKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327
Query: 188 DEATKRGLFPELFRHNKLV 206
D TKRGL PE+ + L+
Sbjct: 328 DSMTKRGLKPEITTYGTLL 346
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 1/180 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ ++ M + G+ ++ FN++I++ + GR E+ K + M ++ PN T ++
Sbjct: 464 KELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDG 523
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
YC AG +DE+ + + S G+ P + Y L+ Y K +R +DA L EM ++ +S
Sbjct: 524 YCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+++G F E ++ + G L + YN +L L L + A R+
Sbjct: 584 IITYNIILQGLFQTRRTAAAKE-LYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMF 642
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV + ++N++++ + GR EA K + M K P T
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P+ + +L+ YAK + D A + +M
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N VT + G + F+++ E G YN+L+ +L +
Sbjct: 403 QGL-NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWD 461
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
+A ++ E RG+ + N ++ S
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDS 488
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 89/217 (41%), Gaps = 19/217 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + S+M + G+ ++ ++ VI + GR E+A++ + +M R P
Sbjct: 388 GKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVY 447
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+++ C D++KE E+ GI + + ++ + K R ++ L D M
Sbjct: 448 NSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVR 507
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR----FYNALLE 172
N I+ + G + G+ D+ + KL +GM+ YN L+
Sbjct: 508 IGVKPNIITYSTLIDGYCLAGKMDEAT----------KLLASMVSVGMKPDCVTYNTLIN 557
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ E A + E G+ P++ +N ++ +
Sbjct: 558 GYCKISRMEDALVLFREMESSGVSPDIITYNIILQGL 594
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 13/180 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +L+ M G+ + ++N +I + + R E+A+ + EME P+ T
Sbjct: 527 AGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT 586
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA------YG 114
+L +KE + I SG + Y ++L K+N D+A
Sbjct: 587 YNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 646
Query: 115 LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
L D R NI + G ++K +DE+ + +F L+ G +R Y+ + E L
Sbjct: 647 LTDLQLETRTFNI--MIGALLKVGRNDEA-----KDLFAALSANGLVPDVRTYSLMAENL 699
>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 794
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++GV N ++N+++ + G+ +EAI +M +P+ T +++ C
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + +GLLD M N I H
Sbjct: 316 KNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 375
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I + + VF K+ +G Y ++ L G E A R ++
Sbjct: 376 VFSILICA-YAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQ 434
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
L P +N L+ S+ + W+
Sbjct: 435 MIDERLSPGNIVYNSLIHSLCIFDKWD 461
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 95/199 (47%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNERTLEAVLSV 67
+L RM++ G N S+N +++ R +EA++ M + C P+ + V++
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ G +D++ + E+ GILP+V+ Y ++A K+ D A +L M N +
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ ++ G + + ++ K++ +G + YN+L++ L G A ++
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFL-KKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327
Query: 188 DEATKRGLFPELFRHNKLV 206
D TKRGL PE+ + L+
Sbjct: 328 DSMTKRGLKPEITTYGTLL 346
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 1/180 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ ++ M + G+ ++ FN++I++ + GR E+ K + M ++ P+ T ++
Sbjct: 464 KELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 523
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
YC AG +DE+ + + S G+ P + Y L+ Y K +R +DA L EM ++ +S
Sbjct: 524 YCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+++G F E ++ + G L + YN +L L L + A R+
Sbjct: 584 IITYNIILQGLFQTRRTAAAKE-LYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMF 642
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV + ++N++++ + GR EA K + M K P T
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P+ + +L+ YAK + D A + +M
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N VT + G + F+++ E G YN+L+ +L +
Sbjct: 403 QGL-NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWD 461
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
+A ++ E RG+ + N ++ S
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDS 488
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/207 (18%), Positives = 89/207 (42%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + M++ G+ ++ +++ + G E M + PN
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G VD++ F +++ G+ P + Y ++ + KS R +DA ++M
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437
Query: 122 NRISNIHQVTGQMIKGE--FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
R+S + V +I FD W + + ++ G L F+N+++++ G
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFD---KWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGR 494
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ ++ D + G+ P++ ++ L+
Sbjct: 495 VIESEKLFDLMVRIGVKPDIITYSTLI 521
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 89/217 (41%), Gaps = 19/217 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + S+M + G+ ++ ++ VI + GR E+A++ + +M R P
Sbjct: 388 GKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVY 447
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+++ C D++KE E+ GI + + ++ + K R ++ L D M
Sbjct: 448 NSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVR 507
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR----FYNALLE 172
+ I+ + G + G+ D+ + KL +GM+ YN L+
Sbjct: 508 IGVKPDIITYSTLIDGYCLAGKMDEAT----------KLLASMVSVGMKPDCVTYNTLIN 557
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ E A + E G+ P++ +N ++ +
Sbjct: 558 GYCKISRMEDALVLFREMESSGVSPDIITYNIILQGL 594
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 13/180 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +L+ M G+ + ++N +I + + R E+A+ + EME P+ T
Sbjct: 527 AGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT 586
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA------YG 114
+L +KE + I SG + Y ++L K+N D+A
Sbjct: 587 YNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 646
Query: 115 LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
L D R NI + G ++K +DE+ + +F L+ G +R Y+ + E L
Sbjct: 647 LTDLQLETRTFNI--MIGALLKVGRNDEA-----KDLFAALSANGLVPDVRTYSLMAENL 699
>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Vitis vinifera]
Length = 587
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N +I+A+ Q +++A Y+E+ + RC P E T +L YC +GL+++++ F E++
Sbjct: 171 YNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMR 230
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
G PS + Y + K A + + M +R T M+ + S
Sbjct: 231 KYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQP-STATYTMLINLYGKASKS 289
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
M VF ++ + + + AL+ A GL E+A + ++ + GL P+++ +N L
Sbjct: 290 YMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNAL 349
Query: 206 V 206
+
Sbjct: 350 M 350
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 96/198 (48%), Gaps = 1/198 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + I ++ E+G+ + ++NA++EA+ + G A + + M+ + C+P+ +
Sbjct: 322 GLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASY 381
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y AGL ++++ F+ +K GI P++ + +LL+ Y+++ + ++++MH
Sbjct: 382 NIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHK 441
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I V M+ + ++ +E V + Y + YN L+ G
Sbjct: 442 SGIKPDTFVLNSMLN-LYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFA 500
Query: 182 RAARVLDEATKRGLFPEL 199
R + R L P++
Sbjct: 501 RMEELFRSLPARNLIPDV 518
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 95/211 (45%), Gaps = 11/211 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ I RM ++ ++ +I + + + A+K + EM +C PN T
Sbjct: 251 GGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICT 310
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA---YGLLD 117
A+++ + GL ++++E F++++ +G+ P V Y L+ Y+++ A + L+
Sbjct: 311 FTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQ 370
Query: 118 EM--HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
M +R S V G +D + VF+ + G M+ + LL A
Sbjct: 371 HMGCEPDRASYNIMVDAYGRAGLHED------AQAVFEVMKRLGITPTMKSHMLLLSAYS 424
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + ++++ K G+ P+ F N ++
Sbjct: 425 RAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 455
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 91/201 (45%), Gaps = 1/201 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ +A+ + M + G ++ +NA I+ +GG ++A++ + M++ RC P+ T
Sbjct: 217 GLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 276
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++Y A + + F E++S P++ + L+ +A+ + A + +++
Sbjct: 277 TMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE 336
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +++ + E +F + G YN +++A GL E
Sbjct: 337 AGLEPDVYAYNALMEAYSRAGFPYGAAE-IFSLMQHMGCEPDRASYNIMVDAYGRAGLHE 395
Query: 182 RAARVLDEATKRGLFPELFRH 202
A V + + G+ P + H
Sbjct: 396 DAQAVFEVMKRLGITPTMKSH 416
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 62/119 (52%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +C+ I+++M +SG+ ++ N+++ + + G+FE+ + MEK + T
Sbjct: 426 AGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADIST 485
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++++Y AG +E F+ + + ++P V+ + + Y++ +++ + +EM
Sbjct: 486 YNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEM 544
>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g07290, mitochondrial; Flags: Precursor
gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 880
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 5/193 (2%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E A NS S++ +I + GR EEA +M + C P+ RT ++ C GL+D
Sbjct: 259 EVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLID 318
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
++ F E+ G P+V Y +L+ + + ++A G+ +M +RI +I
Sbjct: 319 KAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALI 378
Query: 136 KGEFDDESNWQMVEY--VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
G D E V +K C+ +R +N L+E L +G +A +L
Sbjct: 379 NGYCKDGRVVPAFELLTVMEKRACKP---NVRTFNELMEGLCRVGKPYKAVHLLKRMLDN 435
Query: 194 GLFPELFRHNKLV 206
GL P++ +N L+
Sbjct: 436 GLSPDIVSYNVLI 448
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + +M + + + ++NA+I + + GR A + MEK C PN RT
Sbjct: 350 GKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTF 409
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G ++ + + +G+ P ++ Y +L+ + + AY LL M+
Sbjct: 410 NELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMN 468
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 55/112 (49%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE A+L ++++ G+ + ++ +++ + G + + M+ C PN
Sbjct: 559 GCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYP 618
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+++ C G V+E+++ ++ SG+ P+ + Y +++ Y + + D A
Sbjct: 619 YTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRA 670
>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
Length = 573
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 96/197 (48%), Gaps = 2/197 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + G+ N ++ +++ + G+ E+++K EME++ TL +VL+ +C
Sbjct: 283 VFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGLA-TLPTLNSVLNGFC 341
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G++ E++ + G+ P+V+ Y L+ Y + + +A M IS +
Sbjct: 342 KKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVK 401
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G F ++W+ V + D++ G + YN L+ AL C G +A ++LDE
Sbjct: 402 TYNCLITG-FTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDE 460
Query: 190 ATKRGLFPELFRHNKLV 206
+ GL P+ +N ++
Sbjct: 461 MVEVGLEPKHRTYNAII 477
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 24/226 (10%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + + M++ G+ N ++N +I+ +++ G+ +EA A M P+ +T
Sbjct: 344 GMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTY 403
Query: 62 EAVLSVYC-------FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG 114
+++ + +GL+DE KE +G+ ++ Y +L+ A
Sbjct: 404 NCLITGFTTSTDWRSVSGLLDEMKE-------TGVKADLVTYNVLIGALCCKGEVRKAVK 456
Query: 115 LLDEMHTNRISNIHQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
LLDEM + H+ +I G E D + +K C+ + N L+
Sbjct: 457 LLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEK--CKKRA-NVVTCNVFLK 513
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+G + A VL+E ++GL P N++ + + M E G
Sbjct: 514 YFCKMGKMDEANVVLNEMLEKGLVP-----NRITYEIINSGMIEKG 554
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ +L M E+GV + ++N +I A G +A+K EM +V +P RT A
Sbjct: 416 WRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNA 475
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH--- 120
+++ +C G + + ++ +V+ + L + K + D+A +L+EM
Sbjct: 476 IINGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKG 535
Query: 121 --TNRISNIHQVTGQMIKGEFDD 141
NRI+ +G + KG D
Sbjct: 536 LVPNRITYEIINSGMIEKGYVPD 558
>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 11/199 (5%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+EC+ I++ M ESG+ N + +++A+ + G EAI EM + + T A+
Sbjct: 394 EECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCAL 453
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH---- 120
+ C GLV E+ F + + P+V Y L+ K+N DA L DEM
Sbjct: 454 IDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNM 513
Query: 121 -TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
++I+ + G + G F + N + +K+ G L + Y +L+ L G
Sbjct: 514 IPDKIAYTAMIDGNLKHGNFQEALNMR------NKMMEMGIELDLYAYTSLVWGLSQCGQ 567
Query: 180 RERAARVLDEATKRGLFPE 198
++A + L E +G+ P+
Sbjct: 568 VQQARKFLAEMIGKGIIPD 586
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 90/208 (43%), Gaps = 1/208 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + M G + ++NA+I +F + A + + EM+ PN +
Sbjct: 181 GLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISY 240
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G++ + + F ++ G+LP+ Y L+ K+ +A+ L DEM
Sbjct: 241 STLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQ 300
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +++ VT + +E E +F + G ++ Y AL+ + +
Sbjct: 301 EHV-DLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMD 359
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
+A + +E ++ + P++ +VW +
Sbjct: 360 KAMELFNEMREKDIKPDILLWGTIVWGL 387
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 99/235 (42%), Gaps = 12/235 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + + M ++GV N ++ A+I + ++A++ + EM + P+
Sbjct: 321 GMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLW 380
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C ++E K E+K SGI + + Y L+ Y K+ +A LL+EM
Sbjct: 381 GTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMR- 439
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW---CLG 178
+ + + VT + Q Y F ++ + Y AL++ L C+G
Sbjct: 440 DLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIG 499
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
A ++ DE + + P+ K+ ++ + + G + NKM EM
Sbjct: 500 ---DAKKLFDEMQDKNMIPD-----KIAYTAMIDGNLKHGNFQEALNMRNKMMEM 546
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 9/185 (4%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
F+A+ + G E A + ++ M K R P R+ A L AG D S++ F+++
Sbjct: 65 FDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMV 124
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG----EFDD 141
+GI P+V Y +++ K A L ++M ++ +I G D
Sbjct: 125 GAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLD 184
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
ES E F + CE + YNAL+ + RA E + L P +
Sbjct: 185 ESVCLFEEMKF--MGCEP---DVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVIS 239
Query: 202 HNKLV 206
++ L+
Sbjct: 240 YSTLI 244
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 85/205 (41%), Gaps = 23/205 (11%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM++ V + S NA + + G + + + +M P T ++ C G
Sbjct: 87 RMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEG 146
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----------HT 121
+ ++ F+++K G+ P ++ Y L+ Y K D++ L +EM +
Sbjct: 147 DMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYN 206
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I++ + G + EF F ++ + + Y+ L++AL G+ +
Sbjct: 207 ALINSFCKFKGMLRAFEF------------FREMKDKDLKPNVISYSTLIDALCKEGMMQ 254
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + + T+ GL P F ++ L+
Sbjct: 255 MAIKFFVDMTRVGLLPNEFTYSSLI 279
>gi|224137224|ref|XP_002322504.1| predicted protein [Populus trichocarpa]
gi|222867134|gb|EEF04265.1| predicted protein [Populus trichocarpa]
Length = 647
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 113/267 (42%), Gaps = 36/267 (13%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M E ++ N +N ++ G +EAI+ + +M+ P+ T +++++
Sbjct: 320 IYKEMKEKELSLNVLLYNTILAMCADLGFVDEAIEIFEDMKNSGISPDSWTFSSMITMSS 379
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS---- 125
G V E++ E+ +G P++ L+ Y K+ R DD + ++ I+
Sbjct: 380 CCGKVSEAENMLNEMFEAGFQPNIFVLTSLIQCYGKAQRIDDVVKTFNRLYELLITPDDR 439
Query: 126 ------NIHQVT-------------------GQMIK---GEFDDESNWQM-VEYVFDKLN 156
N+ T G ++K E +E N++ +FD ++
Sbjct: 440 FCGCLLNVMTQTPNEELGKLVDCVERANPKLGHVVKLLVEEQGNEGNFKKEAADLFDNIS 499
Query: 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E + + N L++ L + ERA +LD G++ ++ WS+++ +
Sbjct: 500 TE---VKKAYCNCLIDLCVKLNMLERACELLDHGLTLGIYTDIQSKTSTQWSLNLKSLSS 556
Query: 217 GGAYTAISVWLNKMYEMFMMGEDLPQL 243
G A TA+ VW+N + + GE LP L
Sbjct: 557 GAALTALHVWINDLSKALEAGEQLPPL 583
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 14/222 (6%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
++ +F+ +I ++ G F+ + Y EM+ + PN +L A ++K+ +
Sbjct: 227 DTTTFSTLIRIYKDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFY 286
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NI---HQVTGQMIKG 137
Q+I SG+ PS Y LL Y ++ +D + EM +S N+ + +
Sbjct: 287 QDIIDSGLSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADL 346
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
F DE+ +E +F+ + G +++++ C G A +L+E + G P
Sbjct: 347 GFVDEA----IE-IFEDMKNSGISPDSWTFSSMITMSSCCGKVSEAENMLNEMFEAGFQP 401
Query: 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239
+F L+ + + T N++YE+ + +D
Sbjct: 402 NIFVLTSLIQCYGKAQRIDDVVKT-----FNRLYELLITPDD 438
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 57/104 (54%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
+SG++ + ++ A++ A+ + E+ IK Y EM++ N +L++ G VD
Sbjct: 291 DSGLSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADLGFVD 350
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ E F+++K+SGI P + ++ + + + +A +L+EM
Sbjct: 351 EAIEIFEDMKNSGISPDSWTFSSMITMSSCCGKVSEAENMLNEM 394
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 59/125 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + C + M GV N +N +++A + R +A K Y ++ P+ T
Sbjct: 241 SGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDIIDSGLSPSYAT 300
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L Y A +++ + ++E+K + +V+ Y +LA+ A D+A + ++M
Sbjct: 301 YAALLRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADLGFVDEAIEIFEDMK 360
Query: 121 TNRIS 125
+ IS
Sbjct: 361 NSGIS 365
>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +FNA+I+AF + G+ EA K + EM + DP+ T
Sbjct: 307 GRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITY 366
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C +DE+K+ F+ + S LP++ Y L+ + K R +D L EM
Sbjct: 367 NLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQ 426
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + VT I F + + VF ++ + Y+ LL L G +
Sbjct: 427 RGLVG-NTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLD 485
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + K + +F +N ++
Sbjct: 486 TALVIFKYLQKSEMELNIFIYNTMI 510
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 47/241 (19%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ +M + G + ++ V+ + G + A+ +ME R N ++
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTII 265
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C V+ + + F E+++ GI P+V+ Y L+ RW DA LL M +I
Sbjct: 266 DSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKI- 324
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
N + VT +NAL++A + G A +
Sbjct: 325 NPNVVT-----------------------------------FNALIDAFFKEGKLVEAEK 349
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED-LPQLA 244
+ +E +R + P+ +N L+ +H + +M++ FM+ +D LP +
Sbjct: 350 LHEEMIQRSIDPDTITYNLLINGFCMHNRLDEA---------KQMFK-FMVSKDCLPNIQ 399
Query: 245 T 245
T
Sbjct: 400 T 400
>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
Length = 838
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 87/181 (48%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N +I+A+ Q +++A Y+E+ + RC P E T +L YC +GL+++++ F E++
Sbjct: 101 YNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEMR 160
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
G PS + Y + K A + + M +R T M+ + S
Sbjct: 161 KYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQP-STATYTMLINLYGKASKS 219
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
M VF ++ + + + AL+ A GL E+A + ++ + GL P+++ +N L
Sbjct: 220 YMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNAL 279
Query: 206 V 206
+
Sbjct: 280 M 280
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 96/198 (48%), Gaps = 1/198 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + I ++ E+G+ + ++NA++EA+ + G A + + M+ + C+P+ +
Sbjct: 252 GLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASY 311
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y AGL ++++ F+ +K GI P++ + +LL+ Y+++ + ++++MH
Sbjct: 312 NIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHK 371
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I V M+ + ++ +E V + Y + YN L+ G
Sbjct: 372 SGIKPDTFVLNSMLN-LYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFA 430
Query: 182 RAARVLDEATKRGLFPEL 199
R + R L P++
Sbjct: 431 RMEELFRSLPARNLIPDV 448
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 95/211 (45%), Gaps = 11/211 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ I RM ++ ++ +I + + + A+K + EM +C PN T
Sbjct: 181 GGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICT 240
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA---YGLLD 117
A+++ + GL ++++E F++++ +G+ P V Y L+ Y+++ A + L+
Sbjct: 241 FTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQ 300
Query: 118 EM--HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
M +R S V G +D + VF+ + G M+ + LL A
Sbjct: 301 HMGCEPDRASYNIMVDAYGRAGLHED------AQAVFEVMKRLGITPTMKSHMLLLSAYS 354
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + ++++ K G+ P+ F N ++
Sbjct: 355 RAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 385
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 93/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ +A+ + M + G ++ +NA I+ +GG ++A++ + M++ RC P+ T
Sbjct: 147 GLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 206
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++Y A + + F E++S P++ + L+ +A+ + A + +++
Sbjct: 207 TMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE 266
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +++ + E +F + G YN +++A GL E
Sbjct: 267 AGLEPDVYAYNALMEAYSRAGFPYGAAE-IFSLMQHMGCEPDRASYNIMVDAYGRAGLHE 325
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A V + + G+ P + H L+
Sbjct: 326 DAQAVFEVMKRLGITPTMKSHMLLL 350
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 62/119 (52%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +C+ I+++M +SG+ ++ N+++ + + G+FE+ + MEK + T
Sbjct: 356 AGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADIST 415
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++++Y AG +E F+ + + ++P V+ + + Y++ +++ + +EM
Sbjct: 416 YNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEM 474
>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
Length = 556
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + ++ M + N +FN +I+AF + G+ EA + M K P+ T
Sbjct: 273 GQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTF 332
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S +C G V E+++ F + GILP V Y +L+ Y K R D+A L +EM
Sbjct: 333 NTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRC 392
Query: 122 NRISNIHQVTGQMIKGEFDD---ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ + +I G W++ F +N +G + YN L++A +
Sbjct: 393 KNMVLDIVLYSSLIDGLCKSGRISYAWEL----FSTINNDGPPPNVITYNILIDAFCKIQ 448
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
+ + +GL P + +N L+
Sbjct: 449 DIDMGIELFKLMCGKGLTPTVLTYNILI 476
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 85/193 (44%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
++ G+ + + +I + GR +A + EME PN ++ +C L
Sbjct: 180 VAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDEL 239
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++++ + +I GI P ++ Y L+ + ++ +W + L+ EM N+ N + T
Sbjct: 240 TCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEM-VNKNINPNVYTFN 298
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ F + + +F+ + G + +N L+ G A ++ D +R
Sbjct: 299 VLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFER 358
Query: 194 GLFPELFRHNKLV 206
G+ P+++ + L+
Sbjct: 359 GILPDVWSYTILI 371
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++++I+ + GR A + + + PN T ++ +C +D E F+ +
Sbjct: 402 YSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMC 461
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRISNIHQVTGQMIKGEFD 140
G+ P+V+ Y +L+ Y KS R +A LL M + + I+ G G
Sbjct: 462 GKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRIS 521
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
D W++ F ++ G + + YN LL+A
Sbjct: 522 DA--WEL----FKVMHVGGPPVDVATYNVLLDAF 549
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 23/209 (11%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L +M GV + + + I + G A + K PN TL V+
Sbjct: 105 SLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGL 164
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G V ++ + + + G+L +CY L+ K R DA+ LL EM
Sbjct: 165 CINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEME-------- 216
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF-----------YNALLEALWCL 177
GQ++K N + + D+L C+ L ++ Y +L+
Sbjct: 217 ---GQVVKPNI-VIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRT 272
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G +++ E + + P ++ N L+
Sbjct: 273 GQWGEVKQLMCEMVNKNINPNVYTFNVLI 301
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ S ++ G N ++N +I+AF + + I+ + M P T +++ YC
Sbjct: 421 LFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYC 480
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ + E+ ++S + P + Y L KS R DA+ L MH
Sbjct: 481 KSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHV 532
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/231 (17%), Positives = 94/231 (40%), Gaps = 34/231 (14%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M V N +N +I++F + +A Y+++ + DP+ T +++ +C
Sbjct: 211 LLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFC 270
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---------- 119
G E K+ E+ + I P+V + +L+ + + + +A G+ + M
Sbjct: 271 RTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIV 330
Query: 120 HTNRISNIHQVTGQMI-----------KGEFDDESNWQMVEY-------------VFDKL 155
N + + H + G ++ +G D ++ ++ +F+++
Sbjct: 331 TFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEM 390
Query: 156 NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
C+ L + Y++L++ L G A + G P + +N L+
Sbjct: 391 RCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILI 441
>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 821
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 1/207 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG+ + ++L M+ G + ++ +I+AF + E A+K + EM++ PN
Sbjct: 402 GGITR-AMSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYC 460
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++S +C AG V+ + F+E+ I+P V + L+ + K + D A+ + D M
Sbjct: 461 YSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMR 520
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I +I +++ + +E + D G YNAL++A G
Sbjct: 521 KLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDF 580
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVW 207
+A V +E +G+ P N L++
Sbjct: 581 TKAYEVFEEMRTKGIRPCTVTFNALIY 607
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 92/213 (43%), Gaps = 9/213 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +EC + M + V R+ S++ I A + R+ EA ++ + M + PN T
Sbjct: 290 GGKARECLDMFLSMPSNEVKRDVASWSIYITALGRLERYSEAERSLIWMREEHIQPNIYT 349
Query: 61 LEAVLSVYCFAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWD-----DAYG 114
A++ GL + QF+ + + I P+ + Y ++ + ++ R D A
Sbjct: 350 YSALIETLGKGGLCVRALSQFRRMSRIDNIAPNTVTYNAVIKIVSRCKRNDCGGITRAMS 409
Query: 115 LLDEMHTNR-ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
LL EM T I ++ VT + F + +F ++ Y++L+ A
Sbjct: 410 LLREMATKGCIPDV--VTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISA 467
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G ERA + +E T + P++F N L+
Sbjct: 468 FCRAGYVERALAIFEEMTHERIVPDVFAFNALI 500
>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16710, mitochondrial; Flags: Precursor
gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 507
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 93/189 (49%), Gaps = 11/189 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + + N +F A+I+AF + G+ EA + Y M ++ P+ T ++++ C
Sbjct: 245 LLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLC 304
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRI 124
GL+DE+++ F ++ +G P+ + Y L+ + KS R +D + EM N I
Sbjct: 305 MYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTI 364
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + G + G D + + VF++++ +R YN LL+ L C G E+A
Sbjct: 365 TYTVLIQGYCLVGRPD------VAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKAL 418
Query: 185 RVLDEATKR 193
+ + KR
Sbjct: 419 MIFEYMRKR 427
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 93/210 (44%), Gaps = 8/210 (3%)
Query: 5 KECQA--ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ C+A L +M + G + +F +++ + R E+AI + ++ + PN T
Sbjct: 133 QPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYT 192
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ C ++ + E F ++ ++G P+V+ Y L+ + RW DA LL +M
Sbjct: 193 TLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKR 252
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
RI + +T + F + +++ + + Y +L+ L GL +
Sbjct: 253 RIEP-NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDE 311
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVH 212
A ++ + G +P N+++++ +H
Sbjct: 312 ARQMFYLMERNGCYP-----NEVIYTTLIH 336
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N ++ +I+ + G+ E+A + + PN T ++S +C GL+ E+ F
Sbjct: 432 NIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLF 491
Query: 82 QEIKSSGILPS 92
+++K G LP+
Sbjct: 492 KKMKEDGFLPN 502
>gi|242050202|ref|XP_002462845.1| hypothetical protein SORBIDRAFT_02g033010 [Sorghum bicolor]
gi|241926222|gb|EER99366.1| hypothetical protein SORBIDRAFT_02g033010 [Sorghum bicolor]
Length = 798
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 88/168 (52%), Gaps = 1/168 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y ++L M ESGV+ + ++N++I+ F GG A K +M+ +P T A
Sbjct: 410 YDRVSSLLESMEESGVSSDECTYNSLIQMFSVGGFPHRAKKLLGKMKDAGFEPKCETYSA 469
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ Y LV E+ + F E+K+SG+ P+V+ Y +L+ ++A++ +A + + +
Sbjct: 470 IIRSYSCHCLVPEAIDLFNEMKTSGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSG 529
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
IS H V +IK + ++W+ + ++ ++N G + NA+L
Sbjct: 530 ISPNHIVLTSLIKA-YSKFNSWKEAQDLYSRMNDMDGGPDIIASNAML 576
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 87/210 (41%), Gaps = 10/210 (4%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + + + M GV ++ ++N ++ F G E +K Y ++ K P+ + +L
Sbjct: 238 QAEVLFASMMVRGVKPDTKTYNVMMTVFASIGDLERVLKYYYQIGKACLHPDAVSYRILL 297
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ C + E ++ + I SSG +++ +Y D+A E H R
Sbjct: 298 QLLCERKMAHEVEDLIEGILSSGCSVHEQSLPIVMKMYVDLGLLDEAIAFF-ERHC-RGK 355
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG----MRFYNALLEALWCLGLRE 181
I I F ++ W+ E++F C G+G + YN +++A +
Sbjct: 356 GISSKNFSAIMDAFAEKGLWEEAEHIF----CSERGVGNEKDIVEYNVMIKAYGQAKQYD 411
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDV 211
R + +L+ + G+ + +N L+ V
Sbjct: 412 RVSSLLESMEESGVSSDECTYNSLIQMFSV 441
>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 8/231 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG+ + + + M E G+A ++N +I +G +F EA+K ++ KV PN T
Sbjct: 276 GGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVT 335
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +C G +D + F ++KSSG+ P+++ Y L+A Y+K A L+ EM
Sbjct: 336 YNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEME 395
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I+ +VT ++ F + + + + G + Y+ L+ L G
Sbjct: 396 ERCIAP-SKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNM 454
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW-EGGAYTAISVWLNKM 230
+ A+++ + L P N ++++ +H EG +Y A+ + LN+M
Sbjct: 455 KEASKLFKSLGEMHLQP-----NSVIYNTMIHGYCKEGSSYRALRL-LNEM 499
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ + E G++ N + +I+ + G A + +M+++ PN T +++ +
Sbjct: 180 LLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFF 239
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL E + ++ +K SGI+P+ Y L++ Y D A+ + EM I+
Sbjct: 240 KQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVM 299
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G + + V+ V K+N G + YN L+ +G + A R+ ++
Sbjct: 300 TYNILIGGLCRGKKFGEAVKLV-HKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQ 358
Query: 190 ATKRGLFPELFRHNKLV 206
GL P L +N L+
Sbjct: 359 LKSSGLSPTLVTYNTLI 375
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K C+ + S M +SG+ + +++ +I G +EA K + + ++ PN +
Sbjct: 421 KACE-MHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTM 479
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ YC G + E+ SG++P+V +C + + + +W +A LL +M
Sbjct: 480 IHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQM 534
>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 3/193 (1%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G+ N ++N +I + + G+ EA+ +MEKV C PN ++ YC G +DE+
Sbjct: 162 GLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEA 221
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE-MHTNRISNIHQVTGQMIK 136
+ F + S G P+V Y L+ Y K R ++A LLDE + + +I VT I
Sbjct: 222 RSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDI--VTFTTII 279
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
+ +F + G+ + Y LL+ L G E A + E + +
Sbjct: 280 SGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVK 339
Query: 197 PELFRHNKLVWSV 209
P L + L+ S+
Sbjct: 340 PNLVIYTILIDSL 352
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + + G N ++ +++ + G EEA + EM++ PN ++
Sbjct: 292 QQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDS 351
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G + + KE F + G+ P+V Y L+ K +A+ L +M
Sbjct: 352 LCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKM 403
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/198 (17%), Positives = 82/198 (41%), Gaps = 36/198 (18%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++LS++ + G+ + +F ++ G+ ++ + Y +M PN T +++
Sbjct: 118 SVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSL 177
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+G +E+ ++++ G +P+V+ Y L
Sbjct: 178 SKSGKANEALGFLKQMEKVGCVPNVVNYSTL----------------------------- 208
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ G ++G+ D+ + VFD + +G + Y +L+ + E A ++LD
Sbjct: 209 -IDGYCLRGQMDEARS------VFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLD 261
Query: 189 EATKRGLFPELFRHNKLV 206
E ++GL P++ ++
Sbjct: 262 ETLRKGLVPDIVTFTTII 279
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E A+ M S V N + +I++ + G+ ++ + + + PN T
Sbjct: 321 GNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTY 380
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C GL+ E+ + F++++ G P Y +++ + + A L++EM
Sbjct: 381 TALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEM-V 439
Query: 122 NR 123
NR
Sbjct: 440 NR 441
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 108/227 (47%), Gaps = 6/227 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + + M G+A ++ ++N++I+ F + EA + + M C+P+ T ++
Sbjct: 333 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILI 392
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ YC A VD+ F+EI S G++P+ + Y L+ + +S + + A L EM + +
Sbjct: 393 NSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP 452
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G ++ G D+ + +E +F+K+ LG+ YN ++ + + A
Sbjct: 453 PSVVTYGILLDGLCDNGELNKALE-IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWS 511
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ + +G+ P++ +N ++ + + G+ + + KM E
Sbjct: 512 LFCSLSDKGVKPDVVTYNVMIGG-----LCKKGSLSEADMLFRKMKE 553
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M E + + ++ VI++ + G F++A+ + EME + T +++ C
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 291
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G D+ + +E+ I+P V+ + L+ V+ K + +A L +EM T I+
Sbjct: 292 NDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTI 351
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLD 188
+I G F E+ +FD + +G + Y+ L+ + +C R + R+
Sbjct: 352 TYNSLIDG-FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINS-YCKAKRVDDGMRLFR 409
Query: 189 EATKRGLFPELFRHNKLVW 207
E + +GL P +N LV
Sbjct: 410 EISSKGLIPNTITYNTLVL 428
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 1/168 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+F+A+I+ F + G+ EA + Y EM P+ T +++ +C + E+ + F +
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 376
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S G P ++ Y +L+ Y K+ R DD L E+ + + ++ G F
Sbjct: 377 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLG-FCQSGK 435
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+ +F ++ G + Y LL+ L G +A + ++ K
Sbjct: 436 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQK 483
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 85/208 (40%), Gaps = 3/208 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ RM E G + ++ V+ + G A+ + +ME+ +
Sbjct: 189 GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQY 248
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
V+ C G D++ F E++ GI V+ Y L+ +WDD +L EM
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 308
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N I ++ VT + F E + +++++ G YN+L++
Sbjct: 309 RNIIPDV--VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCL 366
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWS 208
A ++ D +G P++ ++ L+ S
Sbjct: 367 HEANQMFDLMVSKGCEPDIVTYSILINS 394
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A++ RM E + + + +I GR EA+ M + P+E T
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 213
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
VL+ C +G + + F++++ I SV+ Y +++ K +DDA L +EM
Sbjct: 214 GPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEM 273
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I VT + G ++ W + ++ + ++AL++ G
Sbjct: 274 KGI-KADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLL 332
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + +E RG+ P+ +N L+
Sbjct: 333 EAKELYNEMITRGIAPDTITYNSLI 357
>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 1219
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++GV N ++N+++ + G+ +EAI +M +P+ T +++ C
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + +GLLD M N I H
Sbjct: 316 KNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 375
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I + + VF K+ +G Y ++ L G E A R ++
Sbjct: 376 VFSILICA-YAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQ 434
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
L P +N L+ S+ + W+
Sbjct: 435 MIDERLSPGNIVYNSLIHSLCIFDKWD 461
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 94/199 (47%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNERTLEAVLSV 67
+L RM++ G N S+N +++ R +EA++ M + C P+ + V++
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ G +D++ + E+ GILP+V+ Y ++A K+ D A +L M N +
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ ++ G + + + K++ +G + YN+L++ L G A ++
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGF-LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327
Query: 188 DEATKRGLFPELFRHNKLV 206
D TKRGL PE+ + L+
Sbjct: 328 DSMTKRGLKPEITTYGTLL 346
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 1/181 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + ++ M + G+ ++ FN++I++ + GR E+ K + M ++ P+ T ++
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
YC AG +DE+ + + S G+ P + Y L+ Y K +R +DA L EM ++ +S
Sbjct: 522 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVS 581
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+++G F E ++ + G L + YN +L L L + A R
Sbjct: 582 PDIITYNIILQGLFQTRRTAAAKE-LYVGITESGTQLELSTYNIILHGLCKNNLTDEALR 640
Query: 186 V 186
+
Sbjct: 641 M 641
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV + ++N++++ + GR EA K + M K P T
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P+ + +L+ YAK + D A + +M
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N VT + G + F+++ E G YN+L+ +L +
Sbjct: 403 QGL-NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWD 461
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
+A ++ E RG+ + N ++ S
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDS 488
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/214 (19%), Positives = 88/214 (41%), Gaps = 19/214 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + S+M + G+ ++ ++ VI + GR E+A++ + +M R P
Sbjct: 388 GKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVY 447
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+++ C D++KE E+ GI + + ++ + K R ++ L D M
Sbjct: 448 NSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVR 507
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR----FYNALLE 172
+ I+ + G + G+ D+ + KL +GM+ YN L+
Sbjct: 508 IGVKPDIITYSTLIDGYCLAGKMDEAT----------KLLASMVSVGMKPDCVTYNTLIN 557
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ E A + E G+ P++ +N ++
Sbjct: 558 GYCKISRMEDALVLFREMESSGVSPDIITYNIIL 591
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 13/180 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +L+ M G+ + ++N +I + + R E+A+ + EME P+ T
Sbjct: 527 AGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT 586
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG------ 114
+L +KE + I SG + Y ++L K+N D+A
Sbjct: 587 YNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 646
Query: 115 LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
L D R NI + G ++K +DE+ + +F L+ G +R Y+ + E L
Sbjct: 647 LTDLQLETRTFNI--MIGALLKVGRNDEA-----KDLFAALSANGLVPDVRTYSLMAENL 699
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 108/227 (47%), Gaps = 6/227 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + + M G+A ++ ++N++I+ F + EA + + M C+P+ T ++
Sbjct: 362 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILI 421
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ YC A VD+ F+EI S G++P+ + Y L+ + +S + + A L EM + +
Sbjct: 422 NSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP 481
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G ++ G D+ + +E +F+K+ LG+ YN ++ + + A
Sbjct: 482 PSVVTYGILLDGLCDNGELNKALE-IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWS 540
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ + +G+ P++ +N ++ + + G+ + + KM E
Sbjct: 541 LFCSLSDKGVKPDVVTYNVMIGG-----LCKKGSLSEADMLFRKMKE 582
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M E + + ++ VI++ + G F++A+ + EME + T +++ C
Sbjct: 261 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 320
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G D+ + +E+ I+P V+ + L+ V+ K + +A L +EM T I+
Sbjct: 321 NDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTI 380
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLD 188
+I G F E+ +FD + +G + Y+ L+ + +C R + R+
Sbjct: 381 TYNSLIDG-FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINS-YCKAKRVDDGMRLFR 438
Query: 189 EATKRGLFPELFRHNKLVW 207
E + +GL P +N LV
Sbjct: 439 EISSKGLIPNTITYNTLVL 457
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 1/168 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+F+A+I+ F + G+ EA + Y EM P+ T +++ +C + E+ + F +
Sbjct: 346 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 405
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S G P ++ Y +L+ Y K+ R DD L E+ + + ++ G F
Sbjct: 406 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLG-FCQSGK 464
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+ +F ++ G + Y LL+ L G +A + ++ K
Sbjct: 465 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQK 512
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 85/208 (40%), Gaps = 3/208 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ RM E G + ++ V+ + G A+ + +ME+ +
Sbjct: 218 GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQY 277
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
V+ C G D++ F E++ GI V+ Y L+ +WDD +L EM
Sbjct: 278 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 337
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N I ++ VT + F E + +++++ G YN+L++
Sbjct: 338 RNIIPDV--VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCL 395
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWS 208
A ++ D +G P++ ++ L+ S
Sbjct: 396 HEANQMFDLMVSKGCEPDIVTYSILINS 423
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A++ RM E + + + +I GR EA+ M + P+E T
Sbjct: 183 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 242
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
VL+ C +G + + F++++ I SV+ Y +++ K +DDA L +EM
Sbjct: 243 GPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEM 302
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I VT + G ++ W + ++ + ++AL++ G
Sbjct: 303 KGI-KADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLL 361
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + +E RG+ P+ +N L+
Sbjct: 362 EAKELYNEMITRGIAPDTITYNSLI 386
>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
Length = 1144
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++GV N ++N+++ + G+ +EAI +M +P+ T +++ C
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLC 315
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + +GLLD M N I H
Sbjct: 316 KNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 375
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I + + VF K+ +G Y ++ L G E A R ++
Sbjct: 376 VFSILICA-YAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQ 434
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
L P +N L+ S+ + W+
Sbjct: 435 MIDERLSPGNIVYNSLIHSLCIFDKWD 461
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 94/199 (47%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNERTLEAVLSV 67
+L RM++ G N S+N +++ R +EA++ M + C P+ + V++
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ G +D++ + E+ GILP+V+ Y ++A K+ D A +L M N +
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPN 268
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ ++ G + + + K++ +G + YN+L++ L G A ++
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGF-LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327
Query: 188 DEATKRGLFPELFRHNKLV 206
D TKRGL PE+ + L+
Sbjct: 328 DSMTKRGLKPEITTYGTLL 346
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 1/183 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + + ++ M + G+ ++ FN++I++ + GR E+ K + M ++ P+ T
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ YC AG +DE+ + + S G+ P + Y L+ Y K +R +DA L EM ++
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+S +++G F E ++ + G L + YN +L L L + A
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKE-LYVGITESGTQLELSTYNIILHGLCKNNLTDEA 638
Query: 184 ARV 186
R+
Sbjct: 639 LRM 641
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV + ++N++++ + GR EA K + M K P T
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P+ + +L+ YAK + D A + +M
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N VT + G + F+++ E G YN+L+ +L +
Sbjct: 403 QGL-NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWD 461
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
+A ++ E RG+ + N ++ S
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDS 488
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/207 (18%), Positives = 89/207 (42%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + M++ G+ ++ +++ + G E M + PN
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G VD++ F +++ G+ P + Y ++ + KS R +DA ++M
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437
Query: 122 NRISNIHQVTGQMIKGE--FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
R+S + V +I FD W + + ++ G L F+N+++++ G
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFD---KWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGR 494
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ ++ D + G+ P++ ++ L+
Sbjct: 495 VIESEKLFDLMVRIGVKPDIITYSTLI 521
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/214 (19%), Positives = 88/214 (41%), Gaps = 19/214 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + S+M + G+ ++ ++ VI + GR E+A++ + +M R P
Sbjct: 388 GKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVY 447
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+++ C D++KE E+ GI + + ++ + K R ++ L D M
Sbjct: 448 NSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVR 507
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR----FYNALLE 172
+ I+ + G + G+ D+ + KL +GM+ YN L+
Sbjct: 508 IGVKPDIITYSTLIDGYCLAGKMDEAT----------KLLASMVSVGMKPDCVTYNTLIN 557
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ E A + E G+ P++ +N ++
Sbjct: 558 GYCKISRMEDALVLFREMESSGVSPDIITYNIIL 591
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 13/179 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L+ M G+ + ++N +I + + R E+A+ + EME P+ T
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG------L 115
+L +KE + I SG + Y ++L K+N D+A L
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 647
Query: 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
D R NI + G ++K +DE+ + +F L+ G +R Y+ + E L
Sbjct: 648 TDLQLETRTFNI--MIGALLKVGRNDEA-----KDLFAALSANGLVPDVRTYSLMAENL 699
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 100/206 (48%), Gaps = 2/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + C++ L M+++ V + +N++I+ GR EEA + Y +++K P+E T
Sbjct: 504 GHISLACES-LENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFT 562
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ YC ++++ + Q++ +SG+ P+ Y LL Y KSN + +L M
Sbjct: 563 YSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSML 622
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + + G +I+ N ++ V ++ G + Y++L+ L +
Sbjct: 623 GSGDKPDNHIYGIVIR-NLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADM 681
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E+A +LDE K GL P + +N L+
Sbjct: 682 EKAVGLLDEMAKEGLEPGIVCYNALI 707
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 2/223 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG KE +A+L MS SG+ N + +++ F + G+ EA EM PN+
Sbjct: 328 GGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIM 387
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ ++ C G + + + E+ G P Y L+ + + D A+ LL+EM
Sbjct: 388 YDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMR 447
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ I G MI G + + + + +++ EG Y L+ G
Sbjct: 448 NSGILPNAYTYGIMINGLCQNGESKE-AGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHI 506
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVD-VHRMWEGGAYTA 222
A L+ TK + P+LF +N L+ + V R+ E Y A
Sbjct: 507 SLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYA 549
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 36/203 (17%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + + M A N ++N +I + G EEA EM P+ T A
Sbjct: 261 FDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGA 320
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ C G + E+K E+ SG+ P+V+ Y L+ + K + +A+ +L+EM +
Sbjct: 321 LMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAG 380
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ + N M Y+ L+ L +G RA
Sbjct: 381 V-----------------QPNKIM-------------------YDNLIRGLCKIGQLGRA 404
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+++L+E K G P+ F ++ L+
Sbjct: 405 SKLLNEMIKVGHRPDTFTYHPLM 427
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 97/233 (41%), Gaps = 7/233 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + Q +L M + G+A N +++ + E K ME P+ T
Sbjct: 189 GSVRTAAQVVL-MMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYT 247
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
L +C A D +K+ F+E++ + + Y ++++ +S ++A+G +EM
Sbjct: 248 YSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMV 307
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+S G ++ G + + + D+++C G + Y L++ G
Sbjct: 308 DYGLSPDAFTYGALMNG-LCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKA 366
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
A +L+E G+ P NK+++ + + + G S LN+M ++
Sbjct: 367 AEAFDILNEMISAGVQP-----NKIMYDNLIRGLCKIGQLGRASKLLNEMIKV 414
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/188 (18%), Positives = 83/188 (44%), Gaps = 2/188 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ + ++G+ + ++++I + E+A+ EM K +P A++ +C
Sbjct: 652 VLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFC 711
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G + ++ F I + G+LP+ + Y L+ K+ DA+ L +M I+
Sbjct: 712 RSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAF 771
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V + G D ++ + ++ +++ GY + ++ L+ G + ++L
Sbjct: 772 VYNVLATG-CSDAADLEQALFLTEEMFNRGYA-HVSLFSTLVRGFCKRGRLQETEKLLHV 829
Query: 190 ATKRGLFP 197
R + P
Sbjct: 830 MMDREIVP 837
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 9/209 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E M + G++ ++ ++ A++ +GGR +EA EM PN
Sbjct: 294 GAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVY 353
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
++ + G E+ + E+ S+G+ P+ + Y L+ K + A LL+EM
Sbjct: 354 ATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIK 413
Query: 120 --HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
H H +++G F E + +++ G Y ++ L
Sbjct: 414 VGHRPDTFTYH----PLMQGHFQHYDKDGAFE-LLNEMRNSGILPNAYTYGIMINGLCQN 468
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A +L+E GL P F + L+
Sbjct: 469 GESKEAGNLLEEMISEGLKPNAFMYAPLI 497
>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 3/209 (1%)
Query: 14 MSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
M E GV ++ S N +I+A + G + A + + EM K CDP+ T +++ C G
Sbjct: 146 MREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLG 205
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
E+KE F+E+ + G PSV+ Y L+ ++ D+A GL D+M I
Sbjct: 206 KTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYS 265
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ G + + + +E + + + + + M Y+ L+ L G A LD
Sbjct: 266 SLMDGLCKNGGSLEAME-LLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKL 324
Query: 193 RGLFPELFRHNKLVWS-VDVHRMWEGGAY 220
+GL P+ + K++ ++ + E Y
Sbjct: 325 QGLKPDAGLYGKIINGFCNIRKFQEAATY 353
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 11/222 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + +M + + N +++++++ + G EA++ M + R PN T
Sbjct: 239 AGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVT 298
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ C G + E+ E +K G+ P Y ++ + ++ +A LDEM
Sbjct: 299 YSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMV 358
Query: 121 TNRIS------NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+IS ++H M+ N ++ + G + +++L++
Sbjct: 359 LGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCF 418
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
G +AAR+ DE G P+ H +WS V W+
Sbjct: 419 CKKGDLHKAARIFDEMVLDGCVPD---HG--IWSAVVGGFWD 455
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 1/178 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + M G A + S+N +I + R ++A +M + PN T ++
Sbjct: 496 EARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIM 555
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C+ G + +++E F+++ SSG+LP++M Y +LL K D+A L M ++
Sbjct: 556 KGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLE 615
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +I+G F ++ + +F KL+ +G R YN +++ L GL + A
Sbjct: 616 PDIILYTILIEGMFIG-GKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEA 672
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 3/205 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L + LS M + G+ + ++ ++ G+ EAI+ + +ME+ C P+
Sbjct: 318 LVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYN 377
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ C LV+++ E E+ GI P+ + Y +L + + D+A L EM
Sbjct: 378 TIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEM-VG 436
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
R + +T ++ E +VF+ + +G + YNAL+ +CL +
Sbjct: 437 RNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNG-YCLRCKMN 495
Query: 183 AAR-VLDEATKRGLFPELFRHNKLV 206
AR V + +G P+L +N L+
Sbjct: 496 EARKVFEIMVGKGCAPDLHSYNILI 520
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 6/217 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M V N+ +F+ +++ Q G EA + M + +PN T
Sbjct: 422 GQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTY 481
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ YC ++E+++ F+ + G P + Y +L+ Y S R D A LL +M
Sbjct: 482 NALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSV 541
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+++ + VT I + +F K+ G + Y+ LL L G +
Sbjct: 542 KKLTP-NTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLD 600
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A ++ ++ L P++ +++++ + M+ GG
Sbjct: 601 EALKLFKSMKEKKLEPDI-----ILYTILIEGMFIGG 632
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + RM ++G + ++N +I++ + +A EM P+ T
Sbjct: 282 GQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTY 341
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L C+ G ++E+ F++++ G P V+ Y ++ K +DA L EM
Sbjct: 342 TTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEM-V 400
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+R + VT I F + +F ++ ++ L++ L G+
Sbjct: 401 DRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVS 460
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A V + T++G+ P ++ +N L+
Sbjct: 461 EARWVFETMTEKGVEPNIYTYNALM 485
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 87/213 (40%), Gaps = 1/213 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K + + M SG + S+N +I G A+ + +ME+ C PN T
Sbjct: 177 GKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTY 236
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C LV+++ + E+ GI P + Y ++ + ++A L M
Sbjct: 237 NTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQ 296
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N +I + D +++ + ++ +G + Y +L L LG
Sbjct: 297 NGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVD-QGIPPDVVTYTTILHGLCYLGQLN 355
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214
A R+ + ++G P++ +N ++ S+ R+
Sbjct: 356 EAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRL 388
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 91/199 (45%), Gaps = 11/199 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G+ + +F +I G+ + A++ Y EM + +P+ + +++ C +G
Sbjct: 153 KMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSG 212
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNI 127
+ + F++++ +G P+V+ Y ++ K +DA L EM + I+
Sbjct: 213 NTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYN 272
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
V G G+ ++ + +F ++ G + YN ++++L+ L AA L
Sbjct: 273 SIVHGLCCLGQLNEATR------LFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFL 326
Query: 188 DEATKRGLFPELFRHNKLV 206
E +G+ P++ + ++
Sbjct: 327 SEMVDQGIPPDVVTYTTIL 345
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 52/111 (46%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ Q + +M SG+ +++ ++ + G +EA+K + M++ + +P+ ++
Sbjct: 566 DAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILI 625
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
G ++ +K F ++ + GI P Y +++ K D+AY L
Sbjct: 626 EGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELF 676
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 2/207 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E M G ++ N +I + GR ++AIK + EME +RC P+ T
Sbjct: 309 AGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVT 368
Query: 61 LEAVL-SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +++ V E F+ +K SGI PS Y +L+ + K+NR + A LL+EM
Sbjct: 369 YNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEM 428
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+I + + +F +L R Y +++ L G
Sbjct: 429 DEKGFPPCPAAYCSLIDA-LGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGR 487
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A + DE + G P ++ +N L+
Sbjct: 488 LDDAVDLFDEMNRLGCTPNVYAYNALM 514
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 81/171 (47%), Gaps = 1/171 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y + + E+ + ++ + +I+ + GR ++A+ + EM ++ C PN A
Sbjct: 453 YDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNA 512
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++S AG++DE+ + ++ G +P + Y ++L AK+ D A G+L M +
Sbjct: 513 LMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSA 572
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
I V+ + G ++ + ++N G+ + Y+++LEA+
Sbjct: 573 IKP-DAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAI 622
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 80/188 (42%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++G+ + + ++ + A+ + EM C P+ T ++
Sbjct: 248 LLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLG 307
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +DE+ F E++ G P + ++ K+ R DDA L +EM T R
Sbjct: 308 KAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVV 367
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+IK F+ +S + F+++ G Y+ L++ E+A +L+E
Sbjct: 368 TYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEE 427
Query: 190 ATKRGLFP 197
++G P
Sbjct: 428 MDEKGFPP 435
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 98/229 (42%), Gaps = 18/229 (7%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNERTLEAVLSV 67
AI ++ + ++N++I G +E+ + Y EM + +C P+ T A++S
Sbjct: 176 AIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISA 235
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTN 122
+C G D + E+K +G+ P+ Y ML+A+ K + A GL +EM +
Sbjct: 236 FCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPD 295
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ + G G D+ N+ F ++ EG N ++ L G +
Sbjct: 296 VFTYTELIRGLGKAGRLDEAYNF------FHEMRREGCRPDTVLMNNMINFLGKAGRLDD 349
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTA-ISVWLNKM 230
A ++ +E P + +N ++ + ++E + + IS W +M
Sbjct: 350 AIKLFEEMETLRCIPSVVTYNTIIKA-----LFESKSRVSEISSWFERM 393
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 9/218 (4%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + RM SG++ + +++ +I+ F + R E+A+ EM++ P +++
Sbjct: 385 EISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLI 444
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----T 121
A D + E FQE+K + S Y +++ K+ R DDA L DEM+ T
Sbjct: 445 DALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCT 504
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + + + DE+ M ++ G + YN +L AL G +
Sbjct: 505 PNVYAYNALMSGLARAGMLDEALTTM-----RRMQDHGCIPDINSYNIILNALAKTGGPD 559
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
RA +L + + P+ +N ++ ++ M+E A
Sbjct: 560 RAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAA 597
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 41/213 (19%), Positives = 89/213 (41%), Gaps = 27/213 (12%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G ++ ++I+A + R++ A + + E+++ + R ++
Sbjct: 424 LLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLG 483
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +D++ + F E+ G P+V Y L++ A++ D+A + M +
Sbjct: 484 KAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDH------- 536
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR-------------FYNALLEALWC 176
G D +++ ++ K +GM YN +L AL
Sbjct: 537 -------GCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSH 589
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
G+ E AA+++ E G +L ++ ++ ++
Sbjct: 590 AGMFEEAAKLMKEMNAIGFDYDLITYSSILEAI 622
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + GV ++ +FN++++ + G+FE A M + C P+ T ++S C
Sbjct: 32 MLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLC 91
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
VD +K E SSG +P V+ Y +L K R D+A+ L+ EM N +
Sbjct: 92 KQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLV 151
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G S + + + L G+ + Y +++ L G ++A ++++
Sbjct: 152 TYNTLIDG-LCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEG 210
Query: 190 ATKRGLFPELFRHNKLV 206
KRG P + + L+
Sbjct: 211 MLKRGCTPSVITYTALM 227
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 8/199 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + SG + ++ +++ + GR ++A+K M K C P+ T A++ C
Sbjct: 172 LLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLC 231
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VDE+ F+E+ S + Y L+ Y KS+R +A ++D + +++
Sbjct: 232 RTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYN 291
Query: 130 --VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ G +G D+ N VF+ + C G ++ YN +++ L G + A L
Sbjct: 292 ALMDGYCKEGRLDEIPN------VFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFL 345
Query: 188 DEATKRGLFPELFRHNKLV 206
+ G P++ +N ++
Sbjct: 346 ESMHSAGCVPDVVSYNIII 364
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 5/229 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M+ G N ++N V++ + G+ +EA M C P+ +
Sbjct: 301 GRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSY 360
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ A E+++ ++ +GI P + Y L+A + K R+DDA G+L M
Sbjct: 361 NIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIK 420
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + +I G E + + L YN +++ L G +
Sbjct: 421 AGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLK 480
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+A ++D T G+ N + +++ + R+ + G S L++M
Sbjct: 481 QALLLMDHMTGHGV-----EANTVTYNIFIDRLCKEGRLDEASSLLSEM 524
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/230 (19%), Positives = 88/230 (38%), Gaps = 37/230 (16%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ ++ SG + +++ + + + GR +EA + EM C PN T ++
Sbjct: 100 KTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDG 159
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-------- 119
C A +++ E + + SSG +P V+ Y +++ K R D A +++ M
Sbjct: 160 LCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPS 219
Query: 120 ------------HTNRISNIHQVTGQMIKGE--------------FDDESNWQMVEYVFD 153
T R+ H + +M+ + + S + + V D
Sbjct: 220 VITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD 279
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+ Y + YNAL++ G + V ++ RG P + +N
Sbjct: 280 GIRGTPY---IDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYN 326
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G+ S +FN +I+AF + R +EA+ M + C P+ T V++ C VD++
Sbjct: 561 GLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKA 620
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
E F E+ GI+ S + Y +L+ R +A +L+EM ++
Sbjct: 621 WELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASS 665
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 88/193 (45%), Gaps = 13/193 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ ++ M+ GV N+ ++N I+ + GR +EA EM+ +R +E +
Sbjct: 477 GCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR---DEVSY 533
Query: 62 EAVLSVYCFAGLVDESKEQFQE-IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ C A +D + + +E + G+ + + +L+ + K+ R D+A LL E+
Sbjct: 534 TTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLL-ELM 592
Query: 121 TNRISNIHQVTGQMIKG---EFDD-ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
R + +T M+ + D + W++ FD++ G Y L+ L
Sbjct: 593 VQRGCSPSVITYNMVITCLCKLDKVDKAWEL----FDEMAVRGIVASSVSYTVLIYGLCG 648
Query: 177 LGLRERAARVLDE 189
G + A +VL+E
Sbjct: 649 QGRGKEALQVLEE 661
>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
Length = 554
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 2/206 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M GV +++ + N +++ + + A + E+ P+E + ++ +C A
Sbjct: 226 KMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPDENSFNTLVHGWCKAR 284
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++ E+ + +E+K G PSV+ Y L+ Y + Y LLDEM R + VT
Sbjct: 285 MLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPP-NVVTY 343
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ + FDKL +G FYN+L+ L G E A V++E
Sbjct: 344 TILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRT 403
Query: 193 RGLFPELFRHNKLVWSVDVHRMWEGG 218
G+ P + N L+ + H E
Sbjct: 404 TGIAPNVTTFNTLISAACDHSQAENA 429
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ KE + M + G + + ++ +++EA+ F+ EM K RC PN T
Sbjct: 285 MLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYT 344
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ AG E+ + F ++K G+ P Y L+ + ++ R +DAY +++EM T
Sbjct: 345 ILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTT 404
Query: 123 RIS 125
I+
Sbjct: 405 GIA 407
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +++ M +G+A N +FN +I A + E A+K V+ME+ C+P+ +T
Sbjct: 388 AGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKT 447
Query: 61 LEAVLSVYC 69
+L + C
Sbjct: 448 YTPLLKLCC 456
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E ++ E GVA ++ +N++I + GR E+A EM PN T
Sbjct: 353 AGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTT 412
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
++S C + + + +++ P + Y LL + K
Sbjct: 413 FNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCK 457
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/116 (18%), Positives = 60/116 (51%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ A+L M + N ++ ++ A + GR EA+ + ++++ P+ +
Sbjct: 321 FQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNS 380
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ + AG ++++ +E++++GI P+V + L++ ++ ++A LL +M
Sbjct: 381 LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 436
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ A+ M +SG+ ++ +FN ++ AF++ R + K + EM+ C PN T
Sbjct: 103 GYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITY 162
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G V+++ + F ++KS G P++ Y ++ KS D A+ L +EM +
Sbjct: 163 SILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTS 222
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ V +I G +F ++ +G + +L+ L G
Sbjct: 223 EGLVATRVVYNSLIHG-LGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRAS 281
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+ EA G ++ +N L+
Sbjct: 282 EARRIFQEARDVGCALDVNLYNVLI 306
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 3/211 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ L RM A + ++N++I+AF + G ++A+ Y M + P+ T
Sbjct: 68 GLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTF 127
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ + A VD + F+E+++ P+V+ Y +L+ K + A + +M +
Sbjct: 128 NVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKS 187
Query: 122 NRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
NI T MI G + ++F+++ EG YN+L+ L G
Sbjct: 188 RGCRPNIFTYT-SMIDG-LGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRA 245
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDV 211
+ AA++ E +GL P+ LV+ + V
Sbjct: 246 DAAAKLFREMLSKGLQPDHVTFTSLVYGLGV 276
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M+ G+ +N++I + GR + A K + EM P+ T +++
Sbjct: 216 LFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLG 275
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG E++ FQE + G V Y +L+ KS R D+A+ + E+ + +
Sbjct: 276 VAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVY 335
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ G + + G + YN L++ L G E A ++L E
Sbjct: 336 TFNALMDG-LCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLE 394
Query: 190 ATKRGLFPELFRHNKLV 206
G P++ +N L+
Sbjct: 395 MQSLGYEPDVVTYNTLI 411
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I + E G+ + +FNA+++ + GR +A +M++ C P+ ++
Sbjct: 321 IFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLR 380
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+G V+E+ + E++S G P V+ Y L+ K R +DA L +E+ +N
Sbjct: 381 KSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFAN 437
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + I + G A + + +N +I+ + R +EA + + E+E+ P+ T
Sbjct: 278 GRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTF 337
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C +G + ++ ++K +G P V Y L+ KS R ++A LL EM +
Sbjct: 338 NALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQS 397
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L M G + ++N +I+ +GGR E+A++ + E+ + N T
Sbjct: 383 GRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEIS-AKGFANTVTY 441
Query: 62 EAVLSVYCFAGLVDESKEQF----QEIKSSGILPSVMCYCMLL 100
+L+ C AG VDE+ + F QE I P + Y LL
Sbjct: 442 NTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLL 484
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 7/207 (3%)
Query: 25 SFNAVIEA-FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE 83
S+NAV++A R A + EM + + PN T ++ +CFAG +D + F +
Sbjct: 171 SYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDK 230
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143
+++ G LP+V+ Y L+ Y K + DD + LL M + + ++ ++ E
Sbjct: 231 METKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEP-NLISYNVVINGLCREG 289
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+ V +V ++N GY L YN L++ G +A + E + GL P + +
Sbjct: 290 RMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYT 349
Query: 204 KLVWSVDVHRMWEGGAYTAISVWLNKM 230
L +H M + G +L++M
Sbjct: 350 SL-----IHSMCKAGNMNRAMEFLDQM 371
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 94/196 (47%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L +M G+ N ++ +++ F Q G EA + EM P+ T A+++ +C
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCV 427
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G ++++ +++K G+ P V+ Y +L+ + +S D+A + EM I
Sbjct: 428 TGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTIT 487
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+I+G F ++ + +++++ G Y AL+ A G E+A ++ +E
Sbjct: 488 YSSLIQG-FCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEM 546
Query: 191 TKRGLFPELFRHNKLV 206
++G+ P++ ++ L+
Sbjct: 547 VEKGVLPDVVTYSVLI 562
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 3/200 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M ES V+ N ++N +I F G + A+ + +ME C PN T ++
Sbjct: 190 ENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDG 249
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
YC +D+ + + + G+ P+++ Y +++ + R + +L EM+ R ++
Sbjct: 250 YCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMN-RRGYSL 308
Query: 128 HQVT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+VT +IKG + E N+ + ++ G + Y +L+ ++ G RA
Sbjct: 309 DEVTYNTLIKG-YCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF 367
Query: 187 LDEATKRGLFPELFRHNKLV 206
LD+ RGL P + LV
Sbjct: 368 LDQMRVRGLCPNERTYTTLV 387
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 100/215 (46%), Gaps = 21/215 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE +L+ M+ G + + ++N +I+ + + G F +A+ + EM + P+ T
Sbjct: 289 GRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITY 348
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C AG ++ + E +++ G+ P+ Y L+ +++ ++AY +L EM+
Sbjct: 349 TSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMND 408
Query: 122 NRIS----------NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
N S N H VTG+M E ++E + +K G + Y+ +L
Sbjct: 409 NGFSPSVVTYNALINGHCVTGKM-------EDAIAVLEDMKEK----GLSPDVVSYSTVL 457
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ A RV E ++G+ P+ ++ L+
Sbjct: 458 SGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 59/103 (57%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G+ ++ +++++I+ F + R +EA Y EM +V P+E T A+++ YC G
Sbjct: 476 MVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGD 535
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
++++ + E+ G+LP V+ Y +L+ K +R +A LL
Sbjct: 536 LEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M+++G + + ++NA+I G+ E+AI +M++ P+ +
Sbjct: 394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSY 453
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
VLS +C + VDE+ +E+ GI P + Y L+ + + R +A L +EM
Sbjct: 454 STVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEM 511
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR-WDDA 112
C + V+ Y L+D++ ++ G +P V+ Y +L +S R A
Sbjct: 130 CYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFA 189
Query: 113 YGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
+ EM +++S +I+G F N + +FDK+ +G + YN L++
Sbjct: 190 ENVFKEMLESQVSPNVFTYNILIRG-FCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L + ++L +GL P L +N ++
Sbjct: 249 GYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVI 282
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + I+++M + G ++ +FN +I A R EEA+ E+ P+ T
Sbjct: 351 GELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTF 410
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G F+E+KSSG P + Y +L+ + +A LL+EM +
Sbjct: 411 NILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMES 470
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N VT I + + E VFD+++ +G +N L++ L +
Sbjct: 471 NGCPR-STVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRID 529
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++++ K GL P +N ++
Sbjct: 530 DATELIEQMVKEGLQPNNITYNSIL 554
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 11/205 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L MS GVA + +F +++ F + G E A++ +M + C P T+ +++ YC
Sbjct: 219 MLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYC 278
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNRIS 125
G V+++ Q+ + G P + Y + ++ A ++D M H +
Sbjct: 279 KMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVF 338
Query: 126 NIHQVTGQMIK-GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ V + K GE D+ +V + D+ G +N L+ AL E A
Sbjct: 339 TYNTVINCLSKNGELDEAKG--IVNQMVDR----GCLPDTTTFNTLIVALSSQNRLEEAL 392
Query: 185 RVLDEATKRGLFPELFRHNKLVWSV 209
+ E T +GL P+++ N L+ ++
Sbjct: 393 DLARELTVKGLSPDVYTFNILINAL 417
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 92/211 (43%), Gaps = 8/211 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M +G R++ ++N +I+A + R EEA + + +M+ + T ++ C
Sbjct: 464 LLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLC 523
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A +D++ E +++ G+ P+ + Y +L Y K A +L+ M N I
Sbjct: 524 KAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFE-IDV 582
Query: 130 VT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT G +I G Q+ + + +G + YN ++++L+ A +
Sbjct: 583 VTYGTLING-LCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFR 641
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
E T+ G P+ L + + + GG
Sbjct: 642 EMTEVGEPPD-----ALTYKIVFRSLCRGGG 667
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 64/135 (47%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + + +M G++R++ +FN +I+ + R ++A + +M K PN T ++
Sbjct: 494 EEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSI 553
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L+ YC G + ++ + + + ++G V+ Y L+ K+ R A LL M I
Sbjct: 554 LTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGI 613
Query: 125 SNIHQVTGQMIKGEF 139
+ +I+ F
Sbjct: 614 RPTPKAYNPVIQSLF 628
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/216 (18%), Positives = 87/216 (40%), Gaps = 1/216 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K +++ + M+ G+ + + N +I+A + + A+ EM P+E T
Sbjct: 175 GSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETT 234
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ + G ++ + ++ +G P+ + +L+ Y K R +DA G + +
Sbjct: 235 FTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEI 294
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ QVT + V D + EG+ + YN ++ L G
Sbjct: 295 ADGFEP-DQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGEL 353
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ A ++++ RG P+ N L+ ++ E
Sbjct: 354 DEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLE 389
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N + Q G A+K M + DP+ T V++ G +DE+K ++
Sbjct: 304 TYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM 363
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G LP + L+ + NR ++A L E+ +S T ++ +
Sbjct: 364 VDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSP-DVYTFNILINALCKVGD 422
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ +F+++ G YN L++ L +G A +L+E G +N
Sbjct: 423 PHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNT 482
Query: 205 LV 206
++
Sbjct: 483 II 484
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 7/217 (3%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ + + +M ++G N+ ++N +I + G+++E ++ EM P+ T
Sbjct: 249 LFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYG 308
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++L+ C G E++ F + GI P V Y +L+ YA + + LD M N
Sbjct: 309 SLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVEN 368
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEY---VFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+S H + F + M++ +F+K+ G + Y AL++AL LG
Sbjct: 369 GLSPDHHIFNIF----FSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGR 424
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ A ++ G+ P + N LV+ + WE
Sbjct: 425 VDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWE 461
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 6/205 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G+ N+ FN +I GR E + ME V P+ + ++S YC G
Sbjct: 470 MLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGR 529
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
DE+++ F + S G+ P+ + Y LL Y ++R DDAY L EM ++
Sbjct: 530 TDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNT 589
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ G F + + E + +N G + YN +L L + A ++ +
Sbjct: 590 ILHGLFQTKRFSEAKELYLNMIN-SGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSK 648
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGG 218
GL + N + +++ + + +GG
Sbjct: 649 GL-----QLNIITFTIMIGALLKGG 668
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 11/227 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM---EKVRCDPNERTLEAVLS 66
+L RM E G ++ S+ +++ R EEA++ M RC PN + V++
Sbjct: 148 LLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVIN 207
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+ G VD+ F E+ GI P V+ Y ++ K+ +D A G+ +M N
Sbjct: 208 GFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKP 267
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR- 185
+ +I G + W+ V + ++++ G Y +LL L C R R AR
Sbjct: 268 NNYTYNCLIHG-YLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYL-CKNGRCREARF 325
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
D ++G+ P++ + + +H GA + + +L+ M E
Sbjct: 326 FFDSMIRKGIKPKVS-----TYGILIHGYATKGALSEMHSFLDLMVE 367
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 9/202 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + ++ M GV ++ S+ +I + GR +EA K + M + P E T
Sbjct: 493 GRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTY 552
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL-LDEMH 120
+L YC A +D++ F+E+ G+ P V+ Y +L ++ R+ +A L L+ ++
Sbjct: 553 NTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMIN 612
Query: 121 TNRISNIHQ---VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ +I+ + + K DE+ ++M F L +G L + + ++ AL
Sbjct: 613 SGTKCDIYTYNIILNGLCKSNCVDEA-FKM----FQSLCSKGLQLNIITFTIMIGALLKG 667
Query: 178 GLRERAARVLDEATKRGLFPEL 199
G +E A + GL P +
Sbjct: 668 GRKEDAMDLFAAIPANGLVPNV 689
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 91/216 (42%), Gaps = 23/216 (10%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + L M E+G++ + FN A+ + G ++A+ + +M + PN
Sbjct: 353 GALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNY 412
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLLD 117
A++ C G VD+++ +F ++ + G+ P+++ + L+ ++W+ A Y +LD
Sbjct: 413 GALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLD 472
Query: 118 E-------MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
+ I N+ V G++++G + D + G Y L
Sbjct: 473 QGICPNAVFFNTLICNLCNV-GRVMEG-----------RRLIDLMEHVGVRPDAFSYTPL 520
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ G + A +V D GL P +N L+
Sbjct: 521 ISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLL 556
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M G+ ++ +I + G E M + P+
Sbjct: 318 GRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIF 377
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
S Y G++D++ + F +++ G+ P+V+ Y L+ K R DDA ++M
Sbjct: 378 NIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMIN 437
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ V ++ G W+ E + ++ +G F+N L+ L +G
Sbjct: 438 EGVTPNIVVFNSLVYG-LCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVM 496
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
R++D G+ P+ F + L+
Sbjct: 497 EGRRLIDLMEHVGVRPDAFSYTPLI 521
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 12/222 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +KE +L MS G+ + ++ +++ + GR EA + M + P T
Sbjct: 283 GKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTY 342
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G + E + +G+ P + + + YAK D A + ++M
Sbjct: 343 GILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQ 402
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ +S G +I G DD E F+++ EG + +N+L+ L
Sbjct: 403 HGLSPNVVNYGALIDALCKLGRVDD------AEVKFNQMINEGVTPNIVVFNSLVYGLCT 456
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSV-DVHRMWEG 217
+ ERA ++ E +G+ P N L+ ++ +V R+ EG
Sbjct: 457 VDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEG 498
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 1/177 (0%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N S++ VI F G+ ++ ++EM P+ T V+ C A L D ++ F
Sbjct: 198 NVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVF 257
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
Q++ +G P+ Y L+ Y +W + +L+EM + G ++
Sbjct: 258 QQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLN-YLCK 316
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+ + FD + +G + Y L+ G LD + GL P+
Sbjct: 317 NGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPD 373
>gi|357480587|ref|XP_003610579.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511634|gb|AES92776.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 706
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 116/261 (44%), Gaps = 31/261 (11%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERTLEAVLSVYCFAG 72
M E + N+ +N+++ G + A + + +M+ C P+ T +++++Y +G
Sbjct: 382 MREKEMDLNTHLYNSLLAMCADVGYTDLAFEIFEDMKSSDTCSPDSWTFSSLITIYSCSG 441
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS------- 125
V E++ E+ SG P++ L+ Y K+ R DD +++ I
Sbjct: 442 RVSEAERMMNEMIESGFEPTIFVLTSLVQCYGKAKRTDDVVKTFNQLLDMGIEPDDRFCG 501
Query: 126 ---NIHQVTGQMIKGEFDD---ESNWQM---VEYVFDKLNCEGY--------------GL 162
N+ T + G+ D ++N ++ V Y+ + L +G G+
Sbjct: 502 CLLNVMTQTPKEELGKLIDCVEKANPKLSFVVRYLVEGLEGDGEFRKEALELFSSITDGV 561
Query: 163 GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTA 222
F N+L++ L L +RA +LD ++ ++ ++ WS+ + + G + TA
Sbjct: 562 KRAFCNSLIDLCINLDLLDRARVLLDLGLTLEIYTDIQSRSQTQWSLILRGLSVGASLTA 621
Query: 223 ISVWLNKMYEMFMMGEDLPQL 243
VW+N + + F GEDLP L
Sbjct: 622 FHVWINDLSKAFESGEDLPPL 642
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 75/182 (41%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+F+ +I+ + G ++ + Y EM+ + PN +L A +++ ++E+
Sbjct: 288 TFSTLIKMYGVAGNYDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEM 347
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
++ ILP+ Y LL Y ++ +DA + EM + + ++ D
Sbjct: 348 INNDILPNRATYASLLHAYGRARFCEDALVVYREMREKEMDLNTHLYNSLLAMCADVGYT 407
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
E D + + +++L+ C G A R+++E + G P +F
Sbjct: 408 DLAFEIFEDMKSSDTCSPDSWTFSSLITIYSCSGRVSEAERMMNEMIESGFEPTIFVLTS 467
Query: 205 LV 206
LV
Sbjct: 468 LV 469
>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
Length = 577
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 96/202 (47%), Gaps = 11/202 (5%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-----CDPNERTLEAVLSVYCFAGLVDE 76
N ++N V+ + R +E ++ + +MEK C+P+ + V+ C A VD+
Sbjct: 67 NVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDK 126
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136
+ E F+ +++ G P+V+ Y L+ K +R D+AY LL ++ + ++
Sbjct: 127 AYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVN 186
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
G F + + + +G+G+ + +NA+L ALW +E+A + + K G
Sbjct: 187 G-FKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKK 245
Query: 197 PELFRHNKLVWSVDVHRMWEGG 218
P N + ++V VH + + G
Sbjct: 246 P-----NVVTYNVAVHGLCKAG 262
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G EC +L M E G N FNA++ A + E+A + + + K PN T
Sbjct: 192 GKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTY 251
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ C AG VDE+ E+ S + P V+ Y ++ + K+ R D A + M
Sbjct: 252 NVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMV 311
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ H VT + F + + V + + G+ G++ YN L++ + E
Sbjct: 312 HECIP-HPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVE 370
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + + ++ P+ + L+
Sbjct: 371 SALEIYHKMKRKKRQPDANTYAPLI 395
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 84/204 (41%), Gaps = 20/204 (9%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G ++N +++ E A++ Y +M++ + P+ T ++ C A
Sbjct: 344 MVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARR 403
Query: 74 VDESKEQFQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNRISNIH 128
VDE+KE +++ ++P+ +C+ L+ V K D+A +LD +
Sbjct: 404 VDEAKEFLDVMEADNVVPNGAICH-ALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAV 462
Query: 129 QVTGQMI-KGEFDDESNWQMVEYV-------------FDKLNCEGYGLGMRFYNALLEAL 174
+V QM+ KG DE+ + V F+K+ G G+ Y L+
Sbjct: 463 EVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEA 522
Query: 175 WCLGLRERAARVLDEATKRGLFPE 198
+ + A R+ + G P+
Sbjct: 523 CSADMADDAFRIFEAMVAAGFTPQ 546
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 7 CQAILSRMSESG-VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
C A++ + + G V + V+E + G +EA++ +M P+E T AVL
Sbjct: 426 CHALVEVLCKQGEVDEACSVLDNVVEICK-AGEPDEAVEVIEQMVLKGVRPDEATYVAVL 484
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C VD + +F+++ S G P ++ Y +L+ ++ DDA+ + + M
Sbjct: 485 RSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAM 538
>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + M SGV ++ ++NA+++ + + G+F E + + EM+K R PN T
Sbjct: 412 GRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTY 471
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ VY L +E+ E F+E K +G+ V+ Y L+ K+ D A LLDEM
Sbjct: 472 STLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEM 529
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG I+ M + N +++ + + + + GR E+A+ Y EM+ + + +
Sbjct: 341 GGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVS 400
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+LS+Y G +++ + +E+ SSG+ V+ Y LL Y K ++++ + EM
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMK 460
Query: 121 TNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+R+ N+ +T + + S ++ VF + G + Y+ L+ AL GL
Sbjct: 461 KDRVFPNL--LTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGL 518
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A +LDE TK G+ P + +N ++
Sbjct: 519 VDSAVLLLDEMTKEGIRPNVVTYNSII 545
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 12/212 (5%)
Query: 1 GGL-YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GG+ +K I M +GV + ++N+++ +GG +E A + EM D +
Sbjct: 270 GGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVF 329
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T +L C G +D + E E+ ILP+V+ Y + YAK+ R +DA L +EM
Sbjct: 330 TYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEM 389
Query: 120 H-----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+R+S ++ G F+D V ++ G + YNALL+
Sbjct: 390 KFLGIGLDRVSYNTLLSIYAKLGRFEDALK------VCKEMGSSGVKKDVVTYNALLDGY 443
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G RV E K +FP L ++ L+
Sbjct: 444 GKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLI 475
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 119/275 (43%), Gaps = 35/275 (12%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-VEMEKVRCDPNERT 60
GL +L M++ G+ N ++N++I+AF + E + E+ P+
Sbjct: 517 GLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPSFML 576
Query: 61 LEAVLS---------VYCF-AGLVDES----------KEQ-------FQEIKSSGILPSV 93
+E V V+ F LV E KE+ F+++ I P+V
Sbjct: 577 IEGVDESEINWDDGHVFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNV 636
Query: 94 MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD 153
+ + +L ++ +DA LL+E+ + ++ V ++ G E+ W +Y+FD
Sbjct: 637 VTFSAILNACSRCKSIEDASMLLEELRLFD-NQVYGVAHGLLMGF--SENVWIQAQYLFD 693
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHR 213
++ FYNAL + LW G + A V+ E +R ++ L+ + L D+H
Sbjct: 694 EVKQMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRKVWETLWSDSCL----DLHL 749
Query: 214 MWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
M G A + WL ++ + G LP+L +++
Sbjct: 750 MSSGAARAMVHAWLLGIHSVVFEGHQLPKLLSILT 784
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK--EQFQ 82
+F+A+I A+ + G F+EAIK + M+ PN T AV+ C G V+ + E F+
Sbjct: 224 AFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDA-CGKGGVEFKRVVEIFE 282
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ +G+ P + Y LLAV ++ W+ A L +EM
Sbjct: 283 EMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEM 319
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 2/155 (1%)
Query: 57 NER--TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG 114
NER A++S G V+ +K F+ S G +V + L++ Y KS +D+A
Sbjct: 184 NERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIK 243
Query: 115 LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ + M + + +I ++ V +F+++ G YN+LL
Sbjct: 244 VFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVC 303
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
GL E A + +E RG+ ++F +N L+ +V
Sbjct: 304 SRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAV 338
>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
Length = 630
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 107/229 (46%), Gaps = 9/229 (3%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E A+ R+ G NS ++NA+I A+ + + +A++ Y EM + + + T ++
Sbjct: 190 REALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSL 249
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+S AG + + F E++ +P+ + Y L+ A+ +W+ A + ++M T
Sbjct: 250 ISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQM-TAHG 308
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL---RE 181
VT + ++ WQ F K+ +G YNA+++ LW G+ +
Sbjct: 309 CTPDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKPDAIVYNAIIDTLWETGIIWAQG 368
Query: 182 RAARVLDEATKRGLF---PELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227
RA ++ A ++G F P + R ++ V++H M G A + WL
Sbjct: 369 RALQLFLTAVQQGHFRQEPVVRRAGRV--EVNLHAMTAGVAMVCLYCWL 415
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 8/210 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + GV ++N +I A + EA+ Y + PN T A++S Y
Sbjct: 160 VLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTTYNALISAYG 219
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-NRISNIH 128
+ ++ E +QE+ + SV+ Y L++ K+ +W+ A + +EM N + N
Sbjct: 220 KTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNT- 278
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT + W+ VF+++ G + Y AL+ A G ++A +
Sbjct: 279 -VTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQWQKALQAFG 337
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+ +G P+ +N + + +WE G
Sbjct: 338 KMCMQGCKPDAIVYNAI-----IDTLWETG 362
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/242 (18%), Positives = 93/242 (38%), Gaps = 36/242 (14%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+++ M + + RN +F A++ + G+ A++ Y M C PN T ++ VY
Sbjct: 90 LMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYNTLVDVYG 149
Query: 70 FAG-------LVDESKEQ----------------------------FQEIKSSGILPSVM 94
G ++D K++ +Q + S G P+
Sbjct: 150 KLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNST 209
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
Y L++ Y K+ + A + EM + +T + + W+ +F++
Sbjct: 210 TYNALISAYGKTMQLGKALEVYQEMLRQNMER-SVITYSSLISACEKAGQWETALRIFNE 268
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214
+ + YN+L+ A G E+A V ++ T G P++ + L+ + +
Sbjct: 269 MQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQ 328
Query: 215 WE 216
W+
Sbjct: 329 WQ 330
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 3/193 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+ A I + A++ EM + + N T A+++V G + + E + +
Sbjct: 70 SYTATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNM 129
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG-EFDDES 143
+++ +P+V+ Y L+ VY K RW+ A +LD M + + + +I ++
Sbjct: 130 RAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQP 189
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+ V+ +L +GY YNAL+ A +A V E ++ + + ++
Sbjct: 190 REALA--VYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYS 247
Query: 204 KLVWSVDVHRMWE 216
L+ + + WE
Sbjct: 248 SLISACEKAGQWE 260
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 41/74 (55%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +++ + +M+ G + ++ A+I A+ +GG++++A++A+ +M C P+
Sbjct: 291 GGQWEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKPDAIV 350
Query: 61 LEAVLSVYCFAGLV 74
A++ G++
Sbjct: 351 YNAIIDTLWETGII 364
>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + M SGV ++ ++NA+++ + + G+F E + + EM+K R PN T
Sbjct: 412 GRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTY 471
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ VY L +E+ E F+E K +G+ V+ Y L+ K+ D A LLDEM
Sbjct: 472 STLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEM 529
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG I+ M + N +++ + + + + GR E+A+ Y EM+ + + +
Sbjct: 341 GGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVS 400
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+LS+Y G +++ + +E+ SSG+ V+ Y LL Y K ++++ + EM
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMK 460
Query: 121 TNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+R+ N+ +T + + S ++ VF + G + Y+ L+ AL GL
Sbjct: 461 KDRVFPNL--LTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGL 518
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A +LDE TK G+ P + +N ++
Sbjct: 519 VDSAVLLLDEMTKEGIRPNVVTYNSII 545
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 12/212 (5%)
Query: 1 GGL-YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GG+ +K I M +GV + ++N+++ +GG +E A + EM D +
Sbjct: 270 GGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVF 329
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T +L C G +D + E E+ ILP+V+ Y + YAK+ R +DA L +EM
Sbjct: 330 TYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEM 389
Query: 120 H-----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+R+S ++ G F+D V ++ G + YNALL+
Sbjct: 390 KFLGIGLDRVSYNTLLSIYAKLGRFEDALK------VCKEMGSSGVKKDVVTYNALLDGY 443
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G RV E K +FP L ++ L+
Sbjct: 444 GKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLI 475
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 118/275 (42%), Gaps = 35/275 (12%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-VEMEKVRCDPNERT 60
GL +L M++ G+ N ++N++I+AF + E + E+ P
Sbjct: 517 GLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPTFML 576
Query: 61 LEAVLS---------VYCF-AGLVDES----------KEQ-------FQEIKSSGILPSV 93
+E V V+ F LV E KE+ F+++ I P+V
Sbjct: 577 IEGVDESEINWDDGHVFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNV 636
Query: 94 MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD 153
+ + +L ++ +DA LL+E+ + ++ V ++ G E+ W +Y+FD
Sbjct: 637 VTFSAILNACSRCKSIEDASMLLEELRLFD-NQVYGVAHGLLMGF--SENVWIQAQYLFD 693
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHR 213
++ FYNAL + LW G + A V+ E +R ++ L+ + L D+H
Sbjct: 694 EVKQMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRKVWETLWSDSCL----DLHL 749
Query: 214 MWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
M G A + WL ++ + G LP+L +++
Sbjct: 750 MSSGAARAMVHAWLLGIHSVVFEGHQLPKLLSILT 784
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK--EQFQ 82
+F+A+I A+ + G F+EAIK + M+ PN T AV+ C G V+ + E F+
Sbjct: 224 AFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDA-CGKGGVEFKRVVEIFE 282
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ +G+ P + Y LLAV ++ W+ A L +EM
Sbjct: 283 EMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEM 319
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 2/155 (1%)
Query: 57 NER--TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG 114
NER A++S G V+ +K F+ S G +V + L++ Y KS +D+A
Sbjct: 184 NERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIK 243
Query: 115 LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ + M + + +I ++ V +F+++ G YN+LL
Sbjct: 244 VFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVC 303
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
GL E A + +E RG+ ++F +N L+ +V
Sbjct: 304 SRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAV 338
>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
Length = 1025
Score = 71.2 bits (173), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 87/178 (48%), Gaps = 1/178 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E I RM +G + ++ A+I A+ + G+ + A++ + +M + C+ N T
Sbjct: 314 GQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITY 373
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++S AG + + E F+E+ + G P+V+ Y L+A A+ +W+ A + ++M
Sbjct: 374 SSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQ- 432
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+R VT + +D +W+ F+++ YN ++ ALW GL
Sbjct: 433 HRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTGL 490
Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/206 (21%), Positives = 92/206 (44%), Gaps = 1/206 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M G N ++N +I+ + + G +EEAI+ +E+ DP RT V+
Sbjct: 252 VYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACN 311
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G E+ ++ + ++G P+ Y L++ Y K+ + D A + +M R +
Sbjct: 312 MSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDM-VRRGCERNV 370
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T + + W++ +F +++ EG + YN+L+ A E+A + ++
Sbjct: 371 ITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQ 430
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMW 215
RG P+ L+ + D W
Sbjct: 431 MQHRGCKPDAVTFGGLIAAYDRAGHW 456
Score = 67.0 bits (162), Expect = 7e-09, Method: Composition-based stats.
Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 6/217 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E +L + G+ ++N VI A G+ +EA++ Y M P T
Sbjct: 279 GAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTY 338
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++S Y G +D + + FQ++ G +V+ Y L++ K+ RW+ A L EMHT
Sbjct: 339 TALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALELFREMHT 398
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ VT + + W+ + +F+++ G + L+ A G
Sbjct: 399 EGCRP-NVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWR 457
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
RA ++ P+ +N +V + +W+ G
Sbjct: 458 RALTAFEQMKAHNCRPDSVVYNTIVGA-----LWKTG 489
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 38/196 (19%), Positives = 85/196 (43%), Gaps = 3/196 (1%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N+ ++ +I + A++ EM N T A+++V +D + + +
Sbjct: 194 NTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVY 253
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIHQVTGQMIKGEFD 140
+++ + G P+++ Y L+ VY K+ W++A +LD + I I +I
Sbjct: 254 RQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMS 313
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
++ Q +++++ G Y AL+ A G +RA ++ + +RG +
Sbjct: 314 GQA--QEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVI 371
Query: 201 RHNKLVWSVDVHRMWE 216
++ L+ + + WE
Sbjct: 372 TYSSLISACEKAGRWE 387
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 93/183 (50%), Gaps = 3/183 (1%)
Query: 28 AVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87
++ + + G+ +EA+ + M+ C+P + A++SV +G D++ + + ++
Sbjct: 81 GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDR 140
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
GI P V + + + + K++R A LL+ M +++ ++ V + G F +E N++
Sbjct: 141 GITPDVYSFTIRMKSFCKTSRPHAALRLLNNM-SSQGCEMNVVAYCTVVGGFYEE-NFKA 198
Query: 148 VEY-VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
Y +F K+ G L + +N LL L G + ++LD+ KRG+ P LF +N +
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFI 258
Query: 207 WSV 209
+
Sbjct: 259 QGL 261
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 91/211 (43%), Gaps = 1/211 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL M ++GV + ++N+++ + +FE+ ++ Y M + C PN T +L C
Sbjct: 483 ILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLC 542
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+DE+ +E+K+ + P + + L+ + K+ D AY L +M +
Sbjct: 543 RYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSST 602
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
T +I F ++ N M E +F ++ G Y +++ G + L E
Sbjct: 603 PTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLE 662
Query: 190 ATKRGLFPELFRHNKLVWSVDVH-RMWEGGA 219
+ G P L +++ + V R++E
Sbjct: 663 MMENGFIPSLTTLGRVINCLCVEDRVYEAAG 693
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 85/207 (41%), Gaps = 4/207 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + ++ M G + +FN +I + + E A++ M DP+ T
Sbjct: 440 GCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTY 499
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L+ C ++ E ++ + G P++ + +LL + + D+A GLL+EM
Sbjct: 500 NSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKN 559
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL--GMRFYNALLEALWCLGL 179
++ G +I G F + +F K+ E Y + YN ++ A
Sbjct: 560 KSVNPDAVTFGTLIDG-FCKNGDLDGAYTLFRKME-EAYKVSSSTPTYNIIIHAFTEKLN 617
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
A ++ E R L P+ + + +V
Sbjct: 618 VTMAEKLFQEMVDRCLGPDGYTYRLMV 644
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 6/219 (2%)
Query: 1 GGLYKE-----CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
GG Y+E + +M SGV+ +FN ++ + G +E K ++ K
Sbjct: 189 GGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVL 248
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
PN T + C G +D + + G P V+ Y L+ K++++ +A
Sbjct: 249 PNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVY 308
Query: 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
L +M + +I G + Q+ E + G+ Y +L++ L
Sbjct: 309 LGKMVNEGLEPDSYTYNTLIAG-YCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLC 367
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214
G RA + +EA +G+ P + +N L+ + M
Sbjct: 368 HEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGM 406
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 82/194 (42%), Gaps = 7/194 (3%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E G + ++N +I + +F+EA +M +P+ T +++ YC G+V
Sbjct: 279 EQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQ 338
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
++ + +G +P Y L+ + A L +E I + +I
Sbjct: 339 LAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI 398
Query: 136 KGEFDDESNWQMV---EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
KG SN M+ + ++++ +G ++ +N L+ L +G A ++
Sbjct: 399 KG----LSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMIS 454
Query: 193 RGLFPELFRHNKLV 206
+G FP++F N L+
Sbjct: 455 KGYFPDIFTFNILI 468
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 85/219 (38%), Gaps = 7/219 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG+ + + I+ +G + ++ ++I+ G A+ + E PN
Sbjct: 334 GGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVIL 393
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ G++ E+ + E+ G++P V + +L+ K DA GL+ M
Sbjct: 394 YNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMI 453
Query: 121 TNRISNIHQVTGQMIKG---EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ +I G + E+ ++++ + D G + YN+LL L
Sbjct: 454 SKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLD----NGVDPDVYTYNSLLNGLCKT 509
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E ++G P LF N L+ S+ +R +
Sbjct: 510 SKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLD 548
>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
Length = 613
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 2/206 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M GV +++ + N +++ + + A + E+ P+E + ++ +C A
Sbjct: 285 KMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPDENSFNTLVHGWCKAR 343
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++ E+ + +E+K G PSV+ Y L+ Y + Y LLDEM R + VT
Sbjct: 344 MLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPP-NVVTY 402
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ + FDKL +G FYN+L+ L G E A V++E
Sbjct: 403 TILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRT 462
Query: 193 RGLFPELFRHNKLVWSVDVHRMWEGG 218
G+ P + N L+ + H E
Sbjct: 463 TGIAPNVTTFNTLISAACDHSQAENA 488
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ KE + M + G + + ++ +++EA+ F+ EM K RC PN T
Sbjct: 344 MLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYT 403
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ AG E+ + F ++K G+ P Y L+ + ++ R +DAY +++EM T
Sbjct: 404 ILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTT 463
Query: 123 RIS 125
I+
Sbjct: 464 GIA 466
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +++ M +G+A N +FN +I A + E A+K V+ME+ C+P+ +T
Sbjct: 447 AGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKT 506
Query: 61 LEAVLSVYC 69
+L + C
Sbjct: 507 YTPLLKLCC 515
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E ++ E GVA ++ +N++I + GR E+A EM PN T
Sbjct: 412 AGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTT 471
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
++S C + + + +++ P + Y LL + K
Sbjct: 472 FNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCK 516
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/116 (18%), Positives = 60/116 (51%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ A+L M + N ++ ++ A + GR EA+ + ++++ P+ +
Sbjct: 380 FQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNS 439
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ + AG ++++ +E++++GI P+V + L++ ++ ++A LL +M
Sbjct: 440 LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 495
>gi|356532361|ref|XP_003534742.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 646
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 120/266 (45%), Gaps = 33/266 (12%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERTLEAVLSVY 68
+ M E G + +N + + G EA+K + +M+ C P+ T +++++Y
Sbjct: 318 VYKEMKEKGKDLDILLYNMLFDMCANVGCEGEAVKIFEDMKSSGTCRPDSFTYASLINMY 377
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN-- 126
G + E + F E+ SG P+++ L+ Y K+ R DD + +++ IS
Sbjct: 378 SSIGKISEMEAMFNEMMESGFEPNIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLGISPDG 437
Query: 127 ------IHQVTGQMIKGEFD------DESNWQM---VEYVFDK--------------LNC 157
++ +T Q+ K E +++N ++ + Y+ +K LN
Sbjct: 438 RFCDCLLYAMT-QVPKEELGKLTGCVEKANPKLGSVLRYIMEKQEGGGDFRMEASELLNS 496
Query: 158 EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEG 217
+ N L++ L + +RA +LD ++ ++ ++ WS+ + R+ G
Sbjct: 497 TEADIKKSMCNCLIDLCVNLDVPDRARDLLDLGLTLEIYTDIQSRSQAKWSLHLKRLSVG 556
Query: 218 GAYTAISVWLNKMYEMFMMGEDLPQL 243
A TA+SVW+N + + +GE+LP L
Sbjct: 557 AALTALSVWINDLSKTLELGEELPPL 582
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 82/201 (40%), Gaps = 6/201 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y C + + + G N ++NA++ A + R +A Y EM PN T
Sbjct: 239 SGNYDGCLNVYNDLKVLGAKPNLVTYNALLYAMGRAKRARDAKAIYEEMINNGLTPNWPT 298
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L YC A ++ ++E+K G ++ Y ML + A +A + ++M
Sbjct: 299 YAALLQAYCRARFNRDALNVYKEMKEKGKDLDILLYNMLFDMCANVGCEGEAVKIFEDMK 358
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ T + + +E +F+++ G+ + +L+ C G
Sbjct: 359 SSGTCRPDSFTYASLINMYSSIGKISEMEAMFNEMMESGFEPNIIVLTSLVH---CYGKA 415
Query: 181 ERA---ARVLDEATKRGLFPE 198
+R ++ ++ G+ P+
Sbjct: 416 KRTDDVVKIFNQLMDLGISPD 436
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 11/183 (6%)
Query: 20 ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKE 79
AR+ +N ++ FR+ FE A K + EM + +PN T ++ L ++ +
Sbjct: 118 ARHVILYNVTLKLFREVKDFEGAEKLFDEMLQRGVNPNLITFSTMIICASVCSLPHKAVK 177
Query: 80 QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQM 134
F+ + S G P ++ YA++ D A L D H + + +
Sbjct: 178 WFEMMPSFGCEPDDNVCSSMIYSYARTGNADMALRLYDRAKAEKWHVDTVVFSGLIKMHG 237
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
+ G +D N V++ L G + YNALL A+ A + +E G
Sbjct: 238 MSGNYDGCLN------VYNDLKVLGAKPNLVTYNALLYAMGRAKRARDAKAIYEEMINNG 291
Query: 195 LFP 197
L P
Sbjct: 292 LTP 294
>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ LSR+S++G ++N ++ G++E K +M C+PN T
Sbjct: 265 GMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITY 324
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+++ C G +DE+K + +K + P Y L++ + + D A LD+M
Sbjct: 325 STLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMIS 384
Query: 120 --HTNRISNIHQVTGQMIK-GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
H I + + + + K G D+ N +F+KL G YN L ALW
Sbjct: 385 GGHLPDILSYNSILASLCKNGNADEALN------IFEKLGEVGCPPNAGSYNTLFGALWS 438
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + RA ++ E G+ P+ +N L+
Sbjct: 439 SGDKIRALGMILEMLSNGIDPDEITYNSLI 468
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 9/204 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM + G + ++N +I F GR + A++ ++ K C P T ++
Sbjct: 168 VLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATI 227
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +DE+ + E+ S G+ P Y +++ K D A+ L +RIS
Sbjct: 228 TQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFL-----SRISKNGC 282
Query: 130 VTG----QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V G ++ + +E W+ E + + +G Y+ L+ AL G + A
Sbjct: 283 VAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKN 342
Query: 186 VLDEATKRGLFPELFRHNKLVWSV 209
VL ++ L P+ + ++ L+ ++
Sbjct: 343 VLKVMKEKALAPDGYSYDPLISAL 366
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 13/191 (6%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +IEA G +EA+K EM P+ T V++ C G++D + E I
Sbjct: 218 TYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRI 277
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGEF 139
+G + V Y +LL +W+ L+ +M N I+ +T G+
Sbjct: 278 SKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKI 337
Query: 140 DDESNWQMVEYVFDK-LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
D+ N +++ + +K L +GY Y+ L+ AL G + A LD+ G P+
Sbjct: 338 DEAKN--VLKVMKEKALAPDGYS-----YDPLISALCREGKVDLAIEFLDDMISGGHLPD 390
Query: 199 LFRHNKLVWSV 209
+ +N ++ S+
Sbjct: 391 ILSYNSILASL 401
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++NAVI F + R + A K M+K +P+ T ++ +C G +D + ++
Sbjct: 148 AYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQL 207
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGEF 139
P+V+ Y +L+ D+A LLDEM +R + V G +G
Sbjct: 208 LKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGML 267
Query: 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
D + E++ +++ G G+ YN LL L G E +++ + +G P
Sbjct: 268 D-----RAFEFL-SRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNP 321
Query: 200 FRHNKLVWSV 209
++ L+ ++
Sbjct: 322 ITYSTLITAL 331
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 88/220 (40%), Gaps = 12/220 (5%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y E L M G + +I+ F + E+AI+ +EK P+ A
Sbjct: 93 YDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEK-HGKPDVFAYNA 151
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
V+S +C A VD + + +K G P V+ Y +L+ + R D A ++D++ +
Sbjct: 152 VISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDN 211
Query: 124 -----ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
I+ + + +G D+ + D++ G YN ++ + G
Sbjct: 212 CKPTVITYTILIEATITQGGIDEAMK------LLDEMLSRGLRPDRYTYNVVVNGMCKEG 265
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+ +RA L +K G + +N L+ + WE G
Sbjct: 266 MLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYG 305
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E I ++ E G N+ S+N + A G A+ +EM DP+E T
Sbjct: 405 GNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITY 464
Query: 62 EAVLSVYCFAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++S C GLVD++ E ++ +S P+V+ Y +L K R DA +L M
Sbjct: 465 NSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAM 523
>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
Length = 514
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 1/173 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L M + N +F+A+I+A+ + G+ + Y M ++ DPN T +++ C
Sbjct: 251 LHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCM 310
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
VDE+ + + S G P+V+ Y L + KS+R DD LLD+M ++
Sbjct: 311 HNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVS 370
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+IKG F + VF + G +R YN +L L+ G E+A
Sbjct: 371 CNTLIKGYF-QAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKA 422
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 1/194 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM + G++ N +++++I + GR +A + EM+ + +PN T A++ Y
Sbjct: 215 VLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYA 274
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + + ++ + I P+V Y L+ NR D+A +LD M ++ +
Sbjct: 275 KRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLM-ISKGCTPNV 333
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT + F S + D + G N L++ + G + A V
Sbjct: 334 VTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGY 393
Query: 190 ATKRGLFPELFRHN 203
T GL P + +N
Sbjct: 394 MTSNGLIPNIRSYN 407
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 57/115 (49%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + GVA N+ S N +I+ + Q G+ + A+ + M PN R+ VL+
Sbjct: 355 LLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLF 414
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
G V+++ +F+ ++ + ++ Y +++ K+ +AY L ++ R+
Sbjct: 415 ANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRV 469
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M+ +G+ N S+N V+ G E+A+ + M+K R D + T ++ C
Sbjct: 390 VFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMC 449
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101
A +V E+ + F ++K + P Y +++A
Sbjct: 450 KACMVKEAYDLFYKLKFKRVEPDFKAYTIMIA 481
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 51/118 (43%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L M G N +++ + F + R ++ IK +M + N + ++
Sbjct: 316 EAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLI 375
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
Y AG +D + F + S+G++P++ Y ++LA + + A + M R
Sbjct: 376 KGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTR 433
>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
Length = 796
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 2/216 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E +A+L+RM G+A ++N ++ AF + G ++A K M +P+ RT
Sbjct: 257 GMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTY 316
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ C AG VDE+ E++ G LP V+ Y L+ K DA LL+EM
Sbjct: 317 NVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMR 376
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ VT ++ E + +K+ EG + YN L++A G
Sbjct: 377 DKGVKPT-LVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNV 435
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+A ++DE +GL + F N +++++ + +E
Sbjct: 436 AKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYE 471
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 4/202 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRF--EEAIKAYVEMEKVRCDPNERTLEAVL 65
Q + S GV + + NAV+ A + + ++ + + ++R PN T ++
Sbjct: 156 QLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLV 215
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+C G + ++ ++ G+ P + Y LL + + +A LL M + I+
Sbjct: 216 HTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIA 275
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
Q T + F + V + + G+ +R YN L L G + A R
Sbjct: 276 PT-QPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFR 334
Query: 186 VLDEATKRGL-FPELFRHNKLV 206
+ DE + G P++ +N LV
Sbjct: 335 LKDEMERLGTALPDVVTYNTLV 356
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 38/205 (18%), Positives = 91/205 (44%), Gaps = 11/205 (5%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y++ + +L + G + S+ V+ A+ + E A++ + +M + + P+ T
Sbjct: 470 YEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNT 529
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ C + E+ ++ E G++P Y +++ Y K ++A+ ++M N
Sbjct: 530 LIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENS 589
Query: 124 -----ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
++ + G + G+ D +F+ +G + + YN L++++ +G
Sbjct: 590 FKPDVVTCNTLMNGLCLHGKLDKALK------LFESWVEKGKKVDVITYNTLIQSMCKVG 643
Query: 179 LRERAARVLDEATKRGLFPELFRHN 203
+ A D+ +GL P+ F +N
Sbjct: 644 DVDTALHFFDDMEVKGLQPDAFTYN 668
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 42/208 (20%), Positives = 93/208 (44%), Gaps = 6/208 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A LS M G++ ++ ++N ++ A + G EA M++ P + T
Sbjct: 222 GTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTY 281
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S + G + ++ + + + + G P + Y +L ++ + D+A+ L DEM
Sbjct: 282 NTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMER 341
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ VT + D W+ + +++ +G + +N ++++L G
Sbjct: 342 LGTALPDVVTYNTL---VDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEG 398
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
E A L++ + GL P++ +N L+
Sbjct: 399 KLEEALGKLEKIAEEGLAPDVITYNTLI 426
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 7/214 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E L +++E G+A + ++N +I+A+ + G +A EM + TL
Sbjct: 398 GKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTL 457
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
VL C ++++E G +P + Y ++A Y K + A L D+M
Sbjct: 458 NTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIE 517
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN---CEGYGLGMRFYNALLEALWCLG 178
++ +IKG + ++ DKLN +G YN ++ A G
Sbjct: 518 RKLIPSISTYNTLIKG----LCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEG 573
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
E A R ++ + P++ N L+ + +H
Sbjct: 574 DLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLH 607
Score = 43.5 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 42/197 (21%), Positives = 85/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + GV + N V+++ + G+ EEA+ ++ + P+ T ++ YC
Sbjct: 371 LLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYC 430
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG V ++ E+ G+ +L K R++DA LL R +
Sbjct: 431 KAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHS-PPQRGFVPDE 489
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V+ + + E N + ++D++ + YN L++ L + + A L+E
Sbjct: 490 VSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNE 549
Query: 190 ATKRGLFPELFRHNKLV 206
++GL P+ +N ++
Sbjct: 550 FVEKGLVPDETTYNIII 566
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 45/244 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M + G N +N ++ F + G E A + + M K P+ ++
Sbjct: 907 GRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSY 966
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G VD++ F+E+K SG+ P ++CY +++ +S R ++A L DEM
Sbjct: 967 SIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRN 1026
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I+ + YNAL+ L G+ E
Sbjct: 1027 RGITP------------------------------------DLYTYNALILNLGIAGMVE 1050
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLP 241
A ++ +E +GL P +F +N L+ H M G A +V Y+ M+G P
Sbjct: 1051 EAGKMYEELQLKGLEPNVFTYNALIRG---HSM-SGNPDRAYAV-----YKKMMVGGCRP 1101
Query: 242 QLAT 245
T
Sbjct: 1102 NTGT 1105
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 93/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + RM G+ + +++A++ A + E + EME + PN T
Sbjct: 206 GFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTF 265
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ + AG +DE+ + + +G P V+ Y +L+ + + ++A L +M
Sbjct: 266 TICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKA 325
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +VT + +F D + ++ + ++ +GY + + L++AL +G +
Sbjct: 326 SS-HKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVD 384
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A LD K+G+ P L +N L+
Sbjct: 385 EAFGTLDVMKKQGVAPNLHTYNTLI 409
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 90/208 (43%), Gaps = 36/208 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + + + G+A ++ ++N ++ + + GR ++AIK EME+ CDP +
Sbjct: 486 GRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVII 545
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ A VDE+ + FQ +K + P+V+ Y LLA K R +A L
Sbjct: 546 NSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALF----- 600
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
KG D+ + +N LL+ L G +
Sbjct: 601 --------------KGMIADDCPPNTIS-----------------FNTLLDCLCKNGEVD 629
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
A ++L T+ FP++ +N +++ +
Sbjct: 630 LALKMLFRMTEMNCFPDVLTYNTVIYGL 657
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 91/209 (43%), Gaps = 1/209 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E IL RM ++G + ++ +I+A G+ A + +++M+ P+ T
Sbjct: 275 AGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVT 334
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L + G +D KE + E+++ G LP V+ + +L+ K + D+A+G LD M
Sbjct: 335 YITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMK 394
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ +I G + +E +F+ + G Y ++ G
Sbjct: 395 KQGVAPNLHTYNTLICGLLRLNRLDEALE-LFNSMESLGLETTAYTYILFIDYYGKSGES 453
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSV 209
+A + ++ G+ P + N ++S+
Sbjct: 454 GKAIKTFEKMKTNGIVPNIVACNASLYSL 482
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 9/205 (4%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + M G+ + ++ I+ + + G +AIK + +M+ PN A L
Sbjct: 420 EALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASL 479
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN--- 122
G ++E+KE F +K G+ P + Y +L+ Y K+ R DDA LL EM N
Sbjct: 480 YSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCD 539
Query: 123 -RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I+ + + K + DE+ W+M F ++ + YN LL L G +
Sbjct: 540 PEVVIINSLIDTLYKADRVDEA-WKM----FQRMKEMKLAPTVVTYNTLLAGLGKEGRVQ 594
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + P N L+
Sbjct: 595 EATALFKGMIADDCPPNTISFNTLL 619
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 11/220 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + M G N+ + N VI + ++AI Y ++ P T
Sbjct: 837 GKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTY 896
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G ++E+K+ F+E+ G +P+ Y +L+ + K + A L M
Sbjct: 897 GPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVK 956
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
I + M+ G+ DD ++ F++L G + YN ++ L
Sbjct: 957 EGIRPDLKSYSIMVDCLCMVGKVDDALHY------FEELKLSGLDPDLVCYNLMINGLGR 1010
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E A + DE RG+ P+L+ +N L+ ++ + M E
Sbjct: 1011 SQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVE 1050
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 47/110 (42%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ RM E +A ++N ++ + GR +EA + M C PN + +L C
Sbjct: 564 MFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLC 623
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G VD + + + P V+ Y ++ K NR + A+ L +M
Sbjct: 624 KNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQM 673
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 24/150 (16%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E A+ M N+ SFN +++ + G + A+K M ++ C P+ T
Sbjct: 591 GRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTY 650
Query: 62 EAVLSVYCFAGLVDESKEQ-----FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
V+ GL+ E++ F ++K I P + C LL K R +DA+ +
Sbjct: 651 NTVIY-----GLIKENRVNYAFWLFHQMKKV-IYPDYVTLCTLLPGVIKDGRIEDAFRVA 704
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
E +H V G+ D S W+
Sbjct: 705 KEF-------VHHV------GDHADGSFWE 721
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ + M + + R+ +++ + + G EA A +M KV N + ++ +
Sbjct: 143 VVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLL 202
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNI 127
+G E+ + ++ + S GI PS+ Y L+ K + GLL EM + + NI
Sbjct: 203 LKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNI 262
Query: 128 HQVT 131
+ T
Sbjct: 263 YTFT 266
>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
Group]
gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
Length = 796
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 56/218 (25%), Positives = 102/218 (46%), Gaps = 6/218 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E +A+L+RM G+A ++N ++ AF + G ++A K M +P+ RT
Sbjct: 257 GMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTY 316
Query: 62 EAVLSVYCFAGLVDES---KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+ C AG VDE+ K++ + + ++ LP V+ Y L+ K DA LL+E
Sbjct: 317 NVLAVGLCQAGKVDEAFRLKDEMERLSTA--LPDVVTYNTLVDACFKWRCSSDALRLLEE 374
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M + VT ++ E + +K+ EG + YN L++A G
Sbjct: 375 MRDKGVKPT-LVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAG 433
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+A ++DE +GL + F N +++++ + +E
Sbjct: 434 NVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYE 471
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 38/205 (18%), Positives = 92/205 (44%), Gaps = 11/205 (5%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y++ + +L + G + S+ V+ A+ + E A++ + +M + + P+ T
Sbjct: 470 YEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNT 529
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ C + E+ ++ E+ G++P Y +++ Y K ++A+ ++M N
Sbjct: 530 LIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENS 589
Query: 124 -----ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
++ + G + G+ D +F+ +G + + YN L++++ +G
Sbjct: 590 FKPDVVTCNTLMNGLCLHGKLDKALK------LFESWVEKGKKVDVITYNTLIQSMCKVG 643
Query: 179 LRERAARVLDEATKRGLFPELFRHN 203
+ A D+ +GL P+ F +N
Sbjct: 644 DVDTALHFFDDMEVKGLQPDAFTYN 668
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 42/208 (20%), Positives = 93/208 (44%), Gaps = 6/208 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A LS M G++ ++ ++N ++ A + G EA M++ P + T
Sbjct: 222 GTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTY 281
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S + G + ++ + + + + G P + Y +L ++ + D+A+ L DEM
Sbjct: 282 NTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMER 341
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ VT + D W+ + +++ +G + +N ++++L G
Sbjct: 342 LSTALPDVVTYNTL---VDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEG 398
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
E A L++ + GL P++ +N L+
Sbjct: 399 KLEEALGKLEKIAEEGLAPDVITYNTLI 426
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 7/214 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E L +++E G+A + ++N +I+A+ + G +A EM + TL
Sbjct: 398 GKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTL 457
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
VL C ++++E G +P + Y ++A Y K + A L D+M
Sbjct: 458 NTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIE 517
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN---CEGYGLGMRFYNALLEALWCLG 178
++ +IKG + ++ DKLN +G YN ++ A G
Sbjct: 518 RKLIPSISTYNTLIKG----LCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEG 573
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
E A R ++ + P++ N L+ + +H
Sbjct: 574 DLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLH 607
Score = 46.2 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 4/202 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRF--EEAIKAYVEMEKVRCDPNERTLEAVL 65
Q + S GV + + NAV+ A + + ++ + + ++R PN T ++
Sbjct: 156 QLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLV 215
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+C G + ++ ++ G+ P + Y LL + + +A LL M + I+
Sbjct: 216 HTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIA 275
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
Q T + F + V + + G+ +R YN L L G + A R
Sbjct: 276 PT-QPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFR 334
Query: 186 VLDEATKRGL-FPELFRHNKLV 206
+ DE + P++ +N LV
Sbjct: 335 LKDEMERLSTALPDVVTYNTLV 356
Score = 43.9 bits (102), Expect = 0.063, Method: Composition-based stats.
Identities = 42/197 (21%), Positives = 85/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + GV + N V+++ + G+ EEA+ ++ + P+ T ++ YC
Sbjct: 371 LLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYC 430
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG V ++ E+ G+ +L K R++DA LL R +
Sbjct: 431 KAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHS-PPQRGFVPDE 489
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V+ + + E N + ++D++ + YN L++ L + + A L+E
Sbjct: 490 VSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNE 549
Query: 190 ATKRGLFPELFRHNKLV 206
++GL P+ +N ++
Sbjct: 550 LVEKGLVPDETTYNIII 566
>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 99/228 (43%), Gaps = 18/228 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M+ G ++ +++ +I + GR +EA K + EM+K PN T + L+ C
Sbjct: 322 VLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLC 381
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIH 128
G E+ E F + + G P + YC LL YA + D GL + M +N I +N H
Sbjct: 382 KHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCH 441
Query: 129 QVT----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
T +G DD +F ++ +G + Y+ ++ +G A
Sbjct: 442 VFTILIHAYAKRGMVDD------AMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAM 495
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTA---ISVWLNK 229
++ RG+ P ++ ++ +H GG A +S +NK
Sbjct: 496 EKFNQMVARGIQPNTAVYSSIIQGFCMH----GGLVKAKELVSEMINK 539
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 91/205 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + + M +G+A N F +I A+ + G ++A+ + EM++ P+ T
Sbjct: 419 GCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTY 478
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+S + G + ++ E+F ++ + GI P+ Y ++ + A L+ EM
Sbjct: 479 STVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMIN 538
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I V + + +FD G G+ +N+L++ +G +
Sbjct: 539 KGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMD 598
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A ++LD G+ P++ +N L+
Sbjct: 599 KAFKILDAMEVVGVEPDIVTYNTLL 623
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV--RCDPNERTLEAVLSV 67
+L RMSE G N+ S++ V++A + A+ M K C P+ V+
Sbjct: 215 LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHG 274
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ G ++ F E+ G+ P V+ Y +++ K+ D A +L +M T+
Sbjct: 275 FFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPD 334
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
MI G + + +F ++ G + N+ L +L G + AA
Sbjct: 335 TVTYSCMIHG-YATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFF 393
Query: 188 DEATKRGLFPELFRHNKLV 206
D T +G P++F + L+
Sbjct: 394 DSMTAKGHKPDIFSYCTLL 412
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 85/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL M GV + ++N +++ + + GR + + + EM++ PN T +L+
Sbjct: 603 ILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLF 662
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG ++++F E+ SG +V Y ++L ++N D+A L ++ T +
Sbjct: 663 RAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSIT 722
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ MI + + + E +F ++ G Y ++ L G E A +
Sbjct: 723 ILNTMINAMYKVQRKEEAKE-LFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSS 781
Query: 190 ATKRGLFPELFRHNKLV 206
K G+ P N+++
Sbjct: 782 MEKSGIVPGSRLLNRII 798
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 91/209 (43%), Gaps = 12/209 (5%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K C ++ M+ GV + ++N +I+A + ++A +M P+ T +
Sbjct: 283 KAC-SLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCM 341
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----H 120
+ Y G + E+ + F+E+K G++P+++ LA K R +A D M H
Sbjct: 342 IHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGH 401
Query: 121 TNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
I S + G +G F D M+ +F+ + G + L+ A G+
Sbjct: 402 KPDIFSYCTLLHGYASEGCFAD-----MIG-LFNSMKSNGIAANCHVFTILIHAYAKRGM 455
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWS 208
+ A + E ++G+ P++ ++ ++ +
Sbjct: 456 VDDAMLIFTEMQQQGVSPDVVTYSTVIST 484
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 84/205 (40%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE M+ G + S+ ++ + G F + I + M+ N
Sbjct: 384 GRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVF 443
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G+VD++ F E++ G+ P V+ Y +++ +++ R DA ++M
Sbjct: 444 TILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVA 503
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I V +I+G + E V + +N + F+++++ +L G
Sbjct: 504 RGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVM 563
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + D AT G P + N L+
Sbjct: 564 DAHDIFDLATDIGERPGVITFNSLI 588
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 34/233 (14%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M SGV+ N S+N +I F G E ++ + EME+ RC PN T V+
Sbjct: 188 EKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGA 247
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----- 122
YC +DE+ + + + G+ P+++ Y M++ + R ++ G+L EM
Sbjct: 248 YCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPD 307
Query: 123 ------------RISNIHQ---VTGQMIKGEFDDE--------------SNWQMVEYVFD 153
++ N HQ + +M++ + N FD
Sbjct: 308 GVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFD 367
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+++ G Y +L+ G + A R+ DE + G P + +N L+
Sbjct: 368 QMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALL 420
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 11/206 (5%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L M G+ N ++N VI + GR EE EM++ P+ T ++
Sbjct: 256 EAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLV 315
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT---- 121
+ YC G ++ E+ +G+ P V+ Y L+ K+ + A D+MH
Sbjct: 316 NGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLR 375
Query: 122 -NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N ++ + G KG F DE+ ++D++ G+ + YNALL G
Sbjct: 376 PNGVTYTSLINGFSQKG-FMDEAYR-----IWDEMIRSGFPPTIVTYNALLNGHCVSGRM 429
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E A +L +GL P++ ++ ++
Sbjct: 430 EEAIGLLRGMEGKGLSPDVVSYSTII 455
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L+ M G A + ++N ++ + + G F +A+ + EM + P+ T
Sbjct: 287 GRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTY 346
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
++++ C AG ++ + E F ++ G+ P+ + Y L+ +++ D+AY + DEM
Sbjct: 347 TSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIR 406
Query: 120 --------HTNRISNIHQVTGQM 134
N + N H V+G+M
Sbjct: 407 SGFPPTIVTYNALLNGHCVSGRM 429
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 32/237 (13%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
+ M E GV+ ++ +++++I+ + R EA + EM P+E T ++++ YC
Sbjct: 472 AEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKE 531
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131
G ++E+ E+ G LP + Y +L+ K R +A LL ++
Sbjct: 532 GDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKL------------ 579
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
F DES + Y D L + + AL++ GL A +V +
Sbjct: 580 -------FYDESIPNGITY--DTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMI 630
Query: 192 KRGLFPELFRHNKLVWSVDVH-RMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVV 247
KR P N+ V++V +H +G + A +K+Y+ + +P T++
Sbjct: 631 KRNQKP-----NEAVYNVIIHGHCRDGNVHKA-----HKLYKEMVDFGFIPHTVTII 677
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 16/193 (8%)
Query: 25 SFNAVIEAF---RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
S+NA++++ R+ F E K Y EM N + ++ +C AG ++ F
Sbjct: 169 SYNAILDSIVRCRKPVIFAE--KVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFF 226
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIK 136
+E++ + LP+V+ Y ++ Y K R D+A+ LL M N ++ + G
Sbjct: 227 EEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRV 286
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
G ++ S V +++ +G+ YN L+ +G +A + E + GL
Sbjct: 287 GRIEETSG------VLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLP 340
Query: 197 PELFRHNKLVWSV 209
P++ + L+ ++
Sbjct: 341 PDVVTYTSLINTM 353
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 6/199 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E I M SG ++NA++ GR EEAI ME P+ +
Sbjct: 392 GFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSY 451
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C +D + + E+ G+ P + Y L+ + R ++A L EM
Sbjct: 452 STIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLN 511
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G + E + + D++ +G+ YN L+ L
Sbjct: 512 KSLLPDEFTYTSLING-YCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTR 570
Query: 182 RAARVL-----DEATKRGL 195
A R+L DE+ G+
Sbjct: 571 EAKRLLLKLFYDESIPNGI 589
>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
Length = 670
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 6/219 (2%)
Query: 10 ILSRMS-ESGVARNSDSFNAVIEAFRQGGRFEEAIKAY---VEMEKVRCDPNERTLEAVL 65
+ RM+ E R SFN+V+ Q G F A++ Y + + V PN T V+
Sbjct: 147 LFDRMACEFECKRTGKSFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVI 206
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C GLVD++ + F+++ P V YC L+ K++R D+A LLDEM +
Sbjct: 207 KAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCF 266
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
VT ++ + + + D + +G YN L+ L G E+A
Sbjct: 267 P-SPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAIS 325
Query: 186 VLDEATKRGLFPELFRHNKLVWS-VDVHRMWEGGAYTAI 223
+LD P + + ++ V R +G A+
Sbjct: 326 LLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLAL 364
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 5/233 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++L M G + +FN +I + G A K M C PNE T ++
Sbjct: 252 EAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLI 311
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G ++++ + SS +P+V+ Y ++ K R D +L M
Sbjct: 312 HGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYC 371
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V +I G F E Q ++F ++ +GY L Y+A+++ L G + A
Sbjct: 372 VNEYVYSTLISGLF-KEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVE 430
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238
VL E T +G P + + L+ G ++ A+ VW + F E
Sbjct: 431 VLSEMTNKGCTPNAYTCSSLMKGF----FEAGNSHRAVEVWKDMAKHNFTQNE 479
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 92/211 (43%), Gaps = 18/211 (8%)
Query: 1 GGLYKECQA-----ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
GL+KE ++ + M+ G N+ ++AVI+ + G+ ++A++ EM C
Sbjct: 382 SGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCT 441
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
PN T +++ + AG + E ++++ + +CY +L+ K + +A +
Sbjct: 442 PNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMV 501
Query: 116 LDEM-----HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG--LGMRFYN 168
+M + ++ + G I G +D +++++ C+G + YN
Sbjct: 502 WTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQ------LYNEMLCQGPDSQPDVVTYN 555
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPEL 199
LL L RA +L+ RG P+L
Sbjct: 556 ILLNTLCKQSSISRAIDLLNSMLDRGCDPDL 586
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 36/242 (14%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV-- 67
++ M G N ++N +I G+ E+AI M +C PN T +++
Sbjct: 291 LVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLV 350
Query: 68 -------------------YC---------FAGLVDESKEQ-----FQEIKSSGILPSVM 94
YC +GL E K Q F+E+ G + +
Sbjct: 351 KQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTI 410
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
Y ++ + + DDA +L EM + ++KG F+ ++ + VE V+
Sbjct: 411 VYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVE-VWKD 469
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214
+ + Y+ L+ L G + A V + +G P++ ++ ++ + + +
Sbjct: 470 MAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGL 529
Query: 215 WE 216
E
Sbjct: 530 VE 531
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 97/202 (48%), Gaps = 10/202 (4%)
Query: 10 ILSRMSESG-VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ M ESG + +++ ++++ + G+ ++A + +M C PN T ++L
Sbjct: 934 LFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGL 993
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C AG +DE+ Q + SG P+++ Y ++ + K R D+AY LL+EM + +
Sbjct: 994 CKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM-VDGGCQPN 1052
Query: 129 QVTGQMIKGEF----DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
VT ++ F E +VE + +K GY + YN+LL+ ERA
Sbjct: 1053 VVTYTVLLDAFCKCGKAEDAIGLVEVMVEK----GYVPNLFTYNSLLDMFCKKDEVERAC 1108
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++L ++G P + +N ++
Sbjct: 1109 QLLSSMIQKGCVPNVVSYNTVI 1130
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 9/224 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E A+L RM+ SG + N ++N +I+ + GR +EA EM C PN T
Sbjct: 996 AGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVT 1055
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+L +C G +++ + + G +P++ Y LL ++ K + + A LL M
Sbjct: 1056 YTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMI 1115
Query: 120 HTNRISNI---HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ N+ + V + K E + + + + NC + +N +++A+
Sbjct: 1116 QKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSN--NCVP---DIVTFNTIIDAMCK 1170
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
+ A + + + G P L +N LV + R ++ Y
Sbjct: 1171 TYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEY 1214
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 1/202 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+ CQ +LS M + G N S+N VI + + E + +M C P+ T +
Sbjct: 1106 RACQ-LLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTI 1164
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ C VD + E F I+ SG P+++ Y L+ KS R+D A LL EM +
Sbjct: 1165 IDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQG 1224
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +T + +F ++ +G Y+ ++ +L + A
Sbjct: 1225 CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEAN 1284
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
VL+ K G P + L+
Sbjct: 1285 NVLELMLKNGFDPGAITYGTLI 1306
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 9/190 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ RM +GV + +++ VI +F + + A K M++ +C P+ T A+++ C
Sbjct: 532 LFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLC 591
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG VD++ + FQE+ G P+++ Y L+ K N+ + A +L+ M +
Sbjct: 592 KAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSI 651
Query: 130 VTGQMIKGEFDD---ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+I G + E W+++ + DK G Y LL AL E ++
Sbjct: 652 TYTCLINGLCNASRLEEAWRVLREMKDK----GCLPDRMTYGTLLRALQKTNNLELVEQL 707
Query: 187 LD--EATKRG 194
L EAT+ G
Sbjct: 708 LKEMEATEEG 717
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 87/231 (37%), Gaps = 34/231 (14%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M ++G ++ +++ +I F + G+ EA +M + C P+ L ++ C
Sbjct: 392 VLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALC 451
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR----IS 125
A +D ++E + P V+ Y +L+ K+ R +A LD M NR +
Sbjct: 452 KAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVV 511
Query: 126 NIHQVTGQMIK-----------------GEFDDESNWQMVEYVFDKLNCEGYGLGMR--- 165
+ V + K G D + +V + F K N M
Sbjct: 512 TYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERM 571
Query: 166 ----------FYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
Y+AL+ L G ++A V E G P L +N L+
Sbjct: 572 KEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLI 622
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 91/201 (45%), Gaps = 10/201 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M+ G+ ++ +++ G+ +A+ + EM K C P+ T +++
Sbjct: 183 LFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLS 241
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RIS 125
+ +D++ +E+ +G P+V Y +L + K+NR ++A LL++M T +
Sbjct: 242 KSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVV 301
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ V + K + DE+ V DK+ G + Y L++ +G + A
Sbjct: 302 SYTTVINGLCKLDQVDEAC-----RVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVE 356
Query: 186 VLDEATKRGLFPELFRHNKLV 206
++ + T+RG P +N ++
Sbjct: 357 LVRKMTERGYRPNAITYNNIM 377
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 1/190 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M ++G A N S+N V+ F + R E A+ +M C P+ + V++ C
Sbjct: 252 LLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLC 311
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
VDE+ ++ G P+V+ Y L+ + + D A L+ +M T R +
Sbjct: 312 KLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKM-TERGYRPNA 370
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T I F ++ + V + G Y+ ++ G A +L++
Sbjct: 371 ITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQ 430
Query: 190 ATKRGLFPEL 199
+RG P++
Sbjct: 431 MIRRGCRPDV 440
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ +M+E G N+ ++N ++ F + E A + M + C P+ ++S +C
Sbjct: 357 LVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFC 416
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
AG + E+ + +++ G P V C L+ K+ D A LL
Sbjct: 417 KAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELL 463
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 11/190 (5%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
+S ++N +I + R ++AI+ EM PN + VL +C A V+ +
Sbjct: 229 DSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLL 288
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIK 136
+++ + G P V+ Y ++ K ++ D+A ++D+M N I+ V G
Sbjct: 289 EQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 348
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
G+ D VE V K+ GY YN ++ ERA +VL + G
Sbjct: 349 GDLDGA-----VELV-RKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCP 402
Query: 197 PELFRHNKLV 206
P+ ++ ++
Sbjct: 403 PDAINYSTII 412
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 77/188 (40%), Gaps = 12/188 (6%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+F +I + G A + EM + N V+ C A +D + E F+E+
Sbjct: 879 TFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEM 938
Query: 85 KSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGE 138
+ SG P V Y ++ KS + DDA L+++M N ++ + G G+
Sbjct: 939 EESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGK 998
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
D+ + + ++ G + YN +++ LG + A +L+E G P
Sbjct: 999 LDEAT------ALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPN 1052
Query: 199 LFRHNKLV 206
+ + L+
Sbjct: 1053 VVTYTVLL 1060
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 106/252 (42%), Gaps = 13/252 (5%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + +L RM+ SG + ++++I AF + G+ EA K EM K R P+ T V
Sbjct: 336 EEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTV 395
Query: 65 LSVYCFAGLVDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+ C G + E++ ++++ SG +LP V+ Y ++ KS+ +A LLD M
Sbjct: 396 IDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRM-CKA 454
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
N VT I + EY+ + G + Y L+ L + A
Sbjct: 455 GCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEA 514
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAISVWLNKMYE 232
RV++E G P L +N +V + V RM +G A + +
Sbjct: 515 ERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIV 574
Query: 233 MFMMGEDLPQLA 244
+M DL Q A
Sbjct: 575 NALMSSDLVQEA 586
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 6/213 (2%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G N ++ A+I AF + + EEA+K EM + C PN T ++ C +V +
Sbjct: 174 GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAA 233
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
++ +++ G P+VM + L+ + K DDA LL M + +I G
Sbjct: 234 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 293
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ + E V +++ G Y+AL+ L E A ++L G P
Sbjct: 294 LCKSQKFLEAKE-VLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTP 352
Query: 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
++ +V+S +H + G L +M
Sbjct: 353 DV-----VVYSSIIHAFCKSGKLLEAQKTLQEM 380
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 12/195 (6%)
Query: 2 GLYKECQAILSRMSESG-VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E Q IL +M ESG V + +++ VI + EA K M K C+P+ T
Sbjct: 403 GKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVT 462
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G ++E++ Q +K +G P+V+ Y L++ K+ + D+A +++EM
Sbjct: 463 YTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMR 522
Query: 121 -----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD-KLNCEGYGLGMRFYNALLEAL 174
N ++ V G + G + Q+V+ + D + C Y ++ AL
Sbjct: 523 NAGCPPNLVTYNTMVNGLCVSGRIKEA--QQLVQRMKDGRAECSPDA---ATYRTIVNAL 577
Query: 175 WCLGLRERAARVLDE 189
L + A ++L++
Sbjct: 578 MSSDLVQEAEQLLEQ 592
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 91/200 (45%), Gaps = 2/200 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q ++ +M E G A N +FN++++ F + G ++A K M PN T A++
Sbjct: 234 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 293
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C + E+KE +E+K+ G+ P Y L+ K+++ ++A +L M + +
Sbjct: 294 LCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 353
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
V +I F + ++ + + YN +++ L LG A +L
Sbjct: 354 VVVYSSIIHA-FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVIL 412
Query: 188 DEATKRG-LFPELFRHNKLV 206
++ + G + P++ ++ ++
Sbjct: 413 EQMQESGDVLPDVVTYSTVI 432
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 4/192 (2%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74
S G + + S+N++++ + + EA + C+P+ + V+S +C AG +
Sbjct: 69 SIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDL 128
Query: 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134
+ E +E+KS+G P + ++ A + D A L M + N+ VT
Sbjct: 129 HAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD--PNV--VTYTA 184
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
+ F + + +++ G + YN L++AL L + A V+ + + G
Sbjct: 185 LIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 244
Query: 195 LFPELFRHNKLV 206
P + N LV
Sbjct: 245 FAPNVMTFNSLV 256
>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 40/246 (16%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-------- 52
G + Q +++ M G+ N FN +I+ + + G +EA++ V MEK
Sbjct: 382 AGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFA 441
Query: 53 ------------RCD---------------PNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
R D PN + ++ +YC G E+K F+E++
Sbjct: 442 YNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREME 501
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR--ISNIHQVTGQMIKGEFDDES 143
G +P+++ Y +L+ Y+K +A+ L DE+ NR I +++ T +I GE D
Sbjct: 502 EKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELE-NRGLIPDVYTCT-SLIHGECID-G 558
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
M +FD++ G + Y A++ L G E A ++ DE + GL P+ ++
Sbjct: 559 KVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYS 618
Query: 204 KLVWSV 209
LV S+
Sbjct: 619 SLVGSL 624
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K + M++ G+ ++ ++ A+I + G+ E A EM+ D N
Sbjct: 348 GNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIF 407
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC +G+VDE+ ++ G+ V Y + + K NR D+A GLL M
Sbjct: 408 NTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVE 467
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+S + ++ + + E N+ + VF ++ +G + YN L++ G +
Sbjct: 468 RGVSP-NTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMK 526
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++ DE RGL P+++ L+
Sbjct: 527 EAHKLKDELENRGLIPDVYTCTSLI 551
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 11/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL+ M + GVA N ++ +I F G+ EEA + + EM + + + +++S C
Sbjct: 286 ILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNC 345
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G V + F E+ G++PS Y L+ K+ + + A L++EM I
Sbjct: 346 RSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPV 405
Query: 130 VTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G D+ Q+V + +G + YN++ L L ++ A
Sbjct: 406 IFNTLIDGYCESGMVDEALRLQVV------MEKKGLESDVFAYNSIASGLCKLNRKDEAK 459
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+L +RG+ P L+
Sbjct: 460 GLLFSMVERGVSPNTMSFTTLI 481
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/228 (19%), Positives = 95/228 (41%), Gaps = 6/228 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
++ E M + G + S + A R+GG+ + ++ + M + + +L
Sbjct: 174 MFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLT 233
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
VL C G V+ ++ E+ + G+ +V+ Y + Y K +L M
Sbjct: 234 IVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKE 293
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
++ + VT ++ F + + + +F+++ +G + Y +++ G +R
Sbjct: 294 GVA-CNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKR 352
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
A + DE T +GL P + L +H + + G A + +N+M
Sbjct: 353 ALVLFDEMTDKGLIPSAHTYGAL-----IHGVCKAGQMEAAQMLVNEM 395
>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 2/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E +M GV +++ + N +++ + + A + E+ P+E +
Sbjct: 1496 WTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPDENSFNT 1554
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ +C A ++ E+ + +E+K G PSV+ Y L+ Y + Y LLDEM R
Sbjct: 1555 LVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRR 1614
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ VT ++ + FDKL +G FYN+L+ L G E A
Sbjct: 1615 CPP-NVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDA 1673
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
V++E G+ P + N L+
Sbjct: 1674 YSVVEEMRTTGIAPNVTTFNTLI 1696
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ KE + M + G + + ++ +++EA+ F+ EM K RC PN T
Sbjct: 1564 MLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYT 1623
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ AG E+ + F ++K G+ P Y L+ + ++ R +DAY +++EM T
Sbjct: 1624 ILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTT 1683
Query: 123 RIS 125
I+
Sbjct: 1684 GIA 1686
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +++ M +G+A N +FN +I A + E A+K V+ME+ C+P+ +T
Sbjct: 1667 AGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKT 1726
Query: 61 LEAVLSVYC 69
+L + C
Sbjct: 1727 YTPLLKLCC 1735
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E ++ E GVA ++ +N++I + GR E+A EM PN T
Sbjct: 1632 AGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTT 1691
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
++S C + + + +++ P + Y LL + K
Sbjct: 1692 FNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCK 1736
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/116 (18%), Positives = 60/116 (51%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ A+L M + N ++ ++ A + GR EA+ + ++++ P+ +
Sbjct: 1600 FQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNS 1659
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ + AG ++++ +E++++GI P+V + L++ ++ ++A LL +M
Sbjct: 1660 LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 1715
>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 36/233 (15%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++LS+M + G+ +S +F +I GR +EA++ + EM PN T ++ V
Sbjct: 142 SVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVL 201
Query: 69 CFAGLVDESKEQFQEIKSSGI-----------------------------------LPSV 93
C G+V E++ F+ + G+ PSV
Sbjct: 202 CKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSV 261
Query: 94 MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD 153
Y +L+ Y KS R D+A LL +M + + VT + S+ + +F
Sbjct: 262 HSYSILINGYCKSRRIDEAKALLTQMSEKELIP-NTVTYNTLMQGLCHASSLLEAQELFK 320
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
K+ G +R Y+ LL+ L G E A ++L +R L P++ +N L+
Sbjct: 321 KMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILI 373
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G A + S++ +I + + R +EA +M + PN T ++ C A
Sbjct: 252 MVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASS 311
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E++E F+++ SSG+LP++ Y +LL K ++A LL M ++ +
Sbjct: 312 LLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNI 371
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I+G F ++ + +F KL G +R YN +++ L GL + A ++ +
Sbjct: 372 LIQGMF-IAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDD 430
Query: 194 GLFPELFRHNKLV 206
G P+ +N ++
Sbjct: 431 GFLPDSCSYNVII 443
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 60/114 (52%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E Q + +M SG+ N +++ +++ + G EEA+K M++ + +P+ ++
Sbjct: 314 EAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILI 373
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
AG ++ +KE F ++ ++GI PSV Y +++ K D+AY L +M
Sbjct: 374 QGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKM 427
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 63/141 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L+ M E + + +N +I+ G+ E A + + ++ P+ RT
Sbjct: 345 GHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTY 404
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ GL DE+ + F++++ G LP Y +++ + ++ A L+DEM
Sbjct: 405 NIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVG 464
Query: 122 NRISNIHQVTGQMIKGEFDDE 142
R S ++ E DE
Sbjct: 465 RRFSADSSTFKMLLDLESHDE 485
>gi|293333246|ref|NP_001169278.1| uncharacterized protein LOC100383141 [Zea mays]
gi|224028343|gb|ACN33247.1| unknown [Zea mays]
Length = 901
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 1/185 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y ++ M ESGV + ++N++I+ F GG A K +M+ +P T A
Sbjct: 489 YDRVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHRAKKLLGKMKDAGFEPKCETYSA 548
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ Y LV E+ + F E+K+SG+ P+V+ Y +L+ ++A++ +A + + +
Sbjct: 549 IIRSYSRHCLVPEAIDLFNEMKASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSG 608
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
IS H V +IK + ++W+ + ++ ++N G + NA+L L + A
Sbjct: 609 ISPNHIVLTSLIKA-YSKFNSWKEAQDLYSRMNDMDGGPDIIASNAMLNLYAKLEMVTEA 667
Query: 184 ARVLD 188
+ D
Sbjct: 668 KEIFD 672
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + +L +M ++G ++++A+I ++ + EAI + EM+ +PN
Sbjct: 521 GGFPHRAKKLLGKMKDAGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASGVEPNVIV 580
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ ++ G V E+ ++ SGI P+ + L+ Y+K N W +A L M+
Sbjct: 581 YGILIDMFAETGNVKEALHYSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQDLYSRMN 640
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 86/203 (42%), Gaps = 35/203 (17%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I+ + + G+ + A+ +++M P+ T +++++ F+G +++ F +
Sbjct: 266 TYNVLIDLYGKAGKLKNALDMFLDMPAHGVMPDTYTFNTLINIFGFSGNSAQAEVLFASM 325
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAY---------GLLDEMHTNRI--------SNI 127
G+ P Y +++ V+A + GL + T RI +
Sbjct: 326 VIRGVKPDTKTYNVMMTVFASIGDLEGVLKYYCQIRNAGLHPDAVTYRILLQVLCERKMV 385
Query: 128 HQ----VTGQMIKGEFDDESNWQMVEYVFDKL------------NCEGYGLGMRFYNALL 171
H+ + G + G F E + +V ++ L +C G G+ + ++A++
Sbjct: 386 HKAEDVIEGILKAGSFVHEQSLPVVMKMYVDLGLLDEAIAFFEKHCRGKGVSSKNFSAIM 445
Query: 172 EALWCLGLRERAARVLDEATKRG 194
+ GL E A + ++RG
Sbjct: 446 DVFAGRGLWEEAEHIF--CSERG 466
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/205 (18%), Positives = 82/205 (40%), Gaps = 2/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + + M GV ++ ++N ++ F G E +K Y ++ P+ T
Sbjct: 313 GNSAQAEVLFASMVIRGVKPDTKTYNVMMTVFASIGDLEGVLKYYCQIRNAGLHPDAVTY 372
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L V C +V ++++ + I +G +++ +Y D+A E H
Sbjct: 373 RILLQVLCERKMVHKAEDVIEGILKAGSFVHEQSLPVVMKMYVDLGLLDEAIAFF-EKHC 431
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R + I F W+ E++F +G + YN +++A +
Sbjct: 432 -RGKGVSSKNFSAIMDVFAGRGLWEEAEHIFCSERGDGNEKDIVEYNVMIKAYGQAKQYD 490
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
R + + + + G+ + +N L+
Sbjct: 491 RVSSLFESMEESGVPSDECTYNSLI 515
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 51/120 (42%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L E + + M SGV N + +I+ F + G +EA+ +E+ PN L
Sbjct: 558 LVPEAIDLFNEMKASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGISPNHIVLT 617
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ Y E+++ + + P ++ +L +YAK +A + D + N
Sbjct: 618 SLIKAYSKFNSWKEAQDLYSRMNDMDGGPDIIASNAMLNLYAKLEMVTEAKEIFDSLRRN 677
>gi|168025874|ref|XP_001765458.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683308|gb|EDQ69719.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 670
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 99/212 (46%), Gaps = 1/212 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + M E G +S+NA++ A+ + ++E+A++ ++ ++ P+ + ++
Sbjct: 339 REAYGLFQVMLEQGYELKLESYNALLCAYERTAQWEDAMRTFIWIQDKGLTPDVMSWSSL 398
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+S AG + + E + +K+S P+V+ +C LL Y K+ W+ A + M +
Sbjct: 399 ISACANAGQAERALEVLERMKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDSGC 458
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
++V + ++ W+ V Y +KL G L + ++ + AL G E A
Sbjct: 459 PP-NEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDVVAWSTTISALAKAGQWELAE 517
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ TK G P + ++ L+ + +WE
Sbjct: 518 EKFKQMTKSGCLPNIVTYSSLIKAYGDVGLWE 549
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 93/207 (44%), Gaps = 4/207 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + I M +SG N ++ +++ A+ +G ++++ + ++E++ +
Sbjct: 441 GNWEKAEEIFHAMLDSGCPPNEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDVVAW 500
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+S AG + ++E+F+++ SG LP+++ Y L+ Y W+ A + M
Sbjct: 501 STTISALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLIKAYGDVGLWEKAESVFKLMLR 560
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL--GMRFYNALLEALWCLGL 179
I Q +++ + + V F+ + + YG+ Y A+ A W G
Sbjct: 561 VGIRPNPQACCALLRA-YGKGKELEKVIIFFESMEPQ-YGVEPDKYAYAAIFWACWTCGE 618
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+RA + +D G P+ + L+
Sbjct: 619 WQRAVKYIDRMEMAGCTPDSVIYTTLI 645
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 19/199 (9%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+GV N+ +I A G R +A+K + MEK + T A++ D
Sbjct: 211 AGVEPNAYVCTTLIAALGCGRRLSQALKLFRWMEKAGIERPIFTFNALMVACGRCASGDT 270
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIHQVTGQMI 135
+ E F+E++ GI+P + + L++ + WD A +D M S +H+
Sbjct: 271 AVELFEEMEKLGIVPDRITFTGLVSATTAAGLWDRAQSFIDMMQARGFSIGLHEYI---- 326
Query: 136 KGEFDDESNWQMVEY--------VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
E W +F + +GY L + YNALL A E A R
Sbjct: 327 ------EMQWACARARKPREAYGLFQVMLEQGYELKLESYNALLCAYERTAQWEDAMRTF 380
Query: 188 DEATKRGLFPELFRHNKLV 206
+GL P++ + L+
Sbjct: 381 IWIQDKGLTPDVMSWSSLI 399
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +K+ + ++ E G+ + +++ I A + G++E A + + +M K C PN T
Sbjct: 475 GRQWKKVLYTIEKLEELGMKLDVVAWSTTISALAKAGQWELAEEKFKQMTKSGCLPNIVT 534
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ Y GL ++++ F+ + GI P+ C LL Y K + + M
Sbjct: 535 YSSLIKAYGDVGLWEKAESVFKLMLRVGIRPNPQACCALLRAYGKGKELEKVIIFFESME 594
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 1/175 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M ++G+ R +FNA++ A + + A++ + EMEK+ P+ T ++S AGL
Sbjct: 243 MEKAGIERPIFTFNALMVACGRCASGDTAVELFEEMEKLGIVPDRITFTGLVSATTAAGL 302
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
D ++ +++ G + Y + A++ + +AYGL M + + +
Sbjct: 303 WDRAQSFIDMMQARGFSIGLHEYIEMQWACARARKPREAYGLFQVM-LEQGYELKLESYN 361
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ ++ + W+ F + +G + +++L+ A G ERA VL+
Sbjct: 362 ALLCAYERTAQWEDAMRTFIWIQDKGLTPDVMSWSSLISACANAGQAERALEVLE 416
>gi|414886512|tpg|DAA62526.1| TPA: hypothetical protein ZEAMMB73_338715 [Zea mays]
Length = 901
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 1/185 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y ++ M ESGV + ++N++I+ F GG A K +M+ +P T A
Sbjct: 489 YDRVSSLFESMEESGVPSDECTYNSLIQMFSFGGFPHRAKKLLGKMKDAGFEPKCETYSA 548
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ Y LV E+ + F E+K+SG+ P+V+ Y +L+ ++A++ +A + + +
Sbjct: 549 IIRSYSRHCLVPEAIDLFNEMKASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSG 608
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
IS H V +IK + ++W+ + ++ ++N G + NA+L L + A
Sbjct: 609 ISPNHIVLTSLIKA-YSKFNSWKEAQDLYSRMNDMDGGPDIIASNAMLNLYAKLEMVTEA 667
Query: 184 ARVLD 188
+ D
Sbjct: 668 KEIFD 672
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + +L +M ++G ++++A+I ++ + EAI + EM+ +PN
Sbjct: 521 GGFPHRAKKLLGKMKDAGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMKASGVEPNVIV 580
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ ++ G V E+ ++ SGI P+ + L+ Y+K N W +A L M+
Sbjct: 581 YGILIDMFAETGNVKEALHYSNLLEQSGISPNHIVLTSLIKAYSKFNSWKEAQDLYSRMN 640
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 86/203 (42%), Gaps = 35/203 (17%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I+ + + G+ + A+ +++M P+ T +++++ F+G +++ F +
Sbjct: 266 TYNVLIDLYGKAGKLKNALDMFLDMPAHGVMPDTYTFNTLINIFGFSGNSAQAEVLFASM 325
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAY---------GLLDEMHTNRI--------SNI 127
G+ P Y +++ V+A + GL + T RI +
Sbjct: 326 VIRGVKPDTKTYNVMMTVFASIGDLEGVLKYYCQIRNAGLHPDAVTYRILLQVLCERKMV 385
Query: 128 HQ----VTGQMIKGEFDDESNWQMVEYVFDKL------------NCEGYGLGMRFYNALL 171
H+ + G + G F E + +V ++ L +C G G+ + ++A++
Sbjct: 386 HKAEDVIEGILKAGSFVHEQSLPVVMKMYVDLGLLDEAIAFFEKHCRGKGVSSKNFSAIM 445
Query: 172 EALWCLGLRERAARVLDEATKRG 194
+ GL E A + ++RG
Sbjct: 446 DVFAGRGLWEEAEHIF--CSERG 466
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/205 (18%), Positives = 82/205 (40%), Gaps = 2/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + + M GV ++ ++N ++ F G E +K Y ++ P+ T
Sbjct: 313 GNSAQAEVLFASMVIRGVKPDTKTYNVMMTVFASIGDLEGVLKYYCQIRNAGLHPDAVTY 372
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L V C +V ++++ + I +G +++ +Y D+A E H
Sbjct: 373 RILLQVLCERKMVHKAEDVIEGILKAGSFVHEQSLPVVMKMYVDLGLLDEAIAFF-EKHC 431
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R + I F W+ E++F +G + YN +++A +
Sbjct: 432 -RGKGVSSKNFSAIMDVFAGRGLWEEAEHIFCSERGDGNEKDIVEYNVMIKAYGQAKQYD 490
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
R + + + + G+ + +N L+
Sbjct: 491 RVSSLFESMEESGVPSDECTYNSLI 515
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 51/120 (42%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L E + + M SGV N + +I+ F + G +EA+ +E+ PN L
Sbjct: 558 LVPEAIDLFNEMKASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLEQSGISPNHIVLT 617
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ Y E+++ + + P ++ +L +YAK +A + D + N
Sbjct: 618 SLIKAYSKFNSWKEAQDLYSRMNDMDGGPDIIASNAMLNLYAKLEMVTEAKEIFDSLRRN 677
>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 2/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E +M GV +++ + N +++ + + A + E+ P+E +
Sbjct: 1537 WTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELRGT-IPPDENSFNT 1595
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ +C A ++ E+ + +E+K G PSV+ Y L+ Y + Y LLDEM R
Sbjct: 1596 LVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRR 1655
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ VT ++ + FDKL +G FYN+L+ L G E A
Sbjct: 1656 CPP-NVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDA 1714
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
V++E G+ P + N L+
Sbjct: 1715 YSVVEEMRTTGIAPNVTTFNTLI 1737
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ KE + M + G + + ++ +++EA+ F+ EM K RC PN T
Sbjct: 1605 MLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYT 1664
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ AG E+ + F ++K G+ P Y L+ + ++ R +DAY +++EM T
Sbjct: 1665 ILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTT 1724
Query: 123 RIS 125
I+
Sbjct: 1725 GIA 1727
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +++ M +G+A N +FN +I A + E A+K V+ME+ C+P+ +T
Sbjct: 1708 AGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKT 1767
Query: 61 LEAVLSVYC 69
+L + C
Sbjct: 1768 YTPLLKLCC 1776
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E ++ E GVA ++ +N++I + GR E+A EM PN T
Sbjct: 1673 AGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTT 1732
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
++S C + + + +++ P + Y LL + K
Sbjct: 1733 FNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLCCK 1777
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/116 (18%), Positives = 60/116 (51%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ A+L M + N ++ ++ A + GR EA+ + ++++ P+ +
Sbjct: 1641 FQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNS 1700
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ + AG ++++ +E++++GI P+V + L++ ++ ++A LL +M
Sbjct: 1701 LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 1756
>gi|42567170|ref|NP_194410.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332659854|gb|AEE85254.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 369
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 1/173 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L M + N +F+A+I+A+ + G+ + Y M ++ DPN T +++ C
Sbjct: 106 LHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCM 165
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
VDE+ + + S G P+V+ Y L + KS+R DD LLD+M ++
Sbjct: 166 HNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVS 225
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+IKG F + VF + G +R YN +L L+ G E+A
Sbjct: 226 CNTLIKGYF-QAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKA 277
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 1/194 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM + G++ N +++++I + GR +A + EM+ + +PN T A++ Y
Sbjct: 70 VLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYA 129
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + + ++ + I P+V Y L+ NR D+A +LD M ++ +
Sbjct: 130 KRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLM-ISKGCTPNV 188
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT + F S + D + G N L++ + G + A V
Sbjct: 189 VTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGY 248
Query: 190 ATKRGLFPELFRHN 203
T GL P + +N
Sbjct: 249 MTSNGLIPNIRSYN 262
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+ +G+ N S+N V+ G E+A+ + M+K R D + T ++ C A +
Sbjct: 249 MTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACM 308
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLA 101
V E+ + F ++K + P Y +++A
Sbjct: 309 VKEAYDLFYKLKFKRVEPDFKAYTIMIA 336
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 57/115 (49%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + GVA N+ S N +I+ + Q G+ + A+ + M PN R+ VL+
Sbjct: 210 LLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLF 269
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
G V+++ +F+ ++ + ++ Y +++ K+ +AY L ++ R+
Sbjct: 270 ANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRV 324
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 51/118 (43%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L M G N +++ + F + R ++ IK +M + N + ++
Sbjct: 171 EAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLI 230
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
Y AG +D + F + S+G++P++ Y ++LA + + A + M R
Sbjct: 231 KGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTR 288
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + G+ N +F A+I+AF + G+ EA + Y M ++ P+ T A+++ C
Sbjct: 244 LLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLC 303
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRI 124
G +DE+++ F ++S+G P+ + Y L+ + KS R +D + EM N I
Sbjct: 304 TYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTI 363
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + G + G D + + VF+++ +R YN LL+ L G E+A
Sbjct: 364 TYTVLIQGYCLVGRPD------VAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKAL 417
Query: 185 RVLDEATKR 193
+ KR
Sbjct: 418 MIFKYMRKR 426
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 5 KECQA--ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ C+A L +M + G + +F +++ F R E+A+ + ++ + PN T
Sbjct: 132 QPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYT 191
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ C ++ + E F ++ +GI P+V+ Y L++ + RW DA LL +M
Sbjct: 192 TLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDM 248
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 81/203 (39%), Gaps = 1/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E + +RM S + F ++ + RF+ I + +M+ + P T
Sbjct: 63 FNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNI 122
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
V++ C + + ++ G P ++ + LL + NR +DA L D++
Sbjct: 123 VMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMG 182
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+I + VE +F+++ G + YN+L+ L +G A
Sbjct: 183 FRPNVVTYTTLIHCLCKNRHLNHAVE-IFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDA 241
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
A +L + KRG+ P + L+
Sbjct: 242 AWLLRDMMKRGIQPNVITFTALI 264
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/159 (18%), Positives = 69/159 (43%), Gaps = 1/159 (0%)
Query: 48 EMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN 107
+M K+ +P+ T ++L +C ++++ F +I G P+V+ Y L+ K+
Sbjct: 142 KMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNR 201
Query: 108 RWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFY 167
+ A + ++M N I + VT + + W ++ + G + +
Sbjct: 202 HLNHAVEIFNQMGDNGIRP-NVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITF 260
Query: 168 NALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
AL++A +G A + + ++P++F + L+
Sbjct: 261 TALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALI 299
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 42/91 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ I M + + N ++ +I+ + G+ E+A + + PN T
Sbjct: 411 GYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITY 470
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPS 92
++S +C G + E+ F+++K G LP+
Sbjct: 471 TTMISGFCRRGFIHEADALFKKMKEDGFLPN 501
>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Vitis vinifera]
Length = 625
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 40/246 (16%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-------- 52
G + Q +++ M G+ N FN +I+ + + G +EA++ V MEK
Sbjct: 378 AGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFA 437
Query: 53 ------------RCD---------------PNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
R D PN + ++ +YC G E+K F+E++
Sbjct: 438 YNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREME 497
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR--ISNIHQVTGQMIKGEFDDES 143
G +P+++ Y +L+ Y+K +A+ L DE+ NR I +++ T +I GE D
Sbjct: 498 EKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELE-NRGLIPDVYTCT-SLIHGECID-G 554
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
M +FD++ G + Y A++ L G E A ++ DE + GL P+ ++
Sbjct: 555 KVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYS 614
Query: 204 KLVWSV 209
LV S+
Sbjct: 615 SLVGSL 620
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K + M++ G+ ++ ++ A+I + G+ E A EM+ D N
Sbjct: 344 GNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIF 403
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC +G+VDE+ ++ G+ V Y + + K NR D+A GLL M
Sbjct: 404 NTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVE 463
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+S + ++ + + E N+ + VF ++ +G + YN L++ G +
Sbjct: 464 RGVSP-NTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMK 522
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++ DE RGL P+++ L+
Sbjct: 523 EAHKLKDELENRGLIPDVYTCTSLI 547
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 11/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL+ M + GVA N ++ +I F G+ EEA + + EM + + + +++S C
Sbjct: 282 ILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNC 341
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G V + F E+ G++PS Y L+ K+ + + A L++EM I
Sbjct: 342 RSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPV 401
Query: 130 VTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G D+ Q+V + +G + YN++ L L ++ A
Sbjct: 402 IFNTLIDGYCESGMVDEALRLQVV------MEKKGLESDVFAYNSIASGLCKLNRKDEAK 455
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+L +RG+ P L+
Sbjct: 456 GLLFSMVERGVSPNTMSFTTLI 477
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/228 (19%), Positives = 95/228 (41%), Gaps = 6/228 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
++ E M + G + S + A R+GG+ + ++ + M + + +L
Sbjct: 170 MFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLT 229
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
VL C G V+ ++ E+ + G+ +V+ Y + Y K +L M
Sbjct: 230 IVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKE 289
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
++ + VT ++ F + + + +F+++ +G + Y +++ G +R
Sbjct: 290 GVA-CNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKR 348
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
A + DE T +GL P + L +H + + G A + +N+M
Sbjct: 349 ALVLFDEMTDKGLIPSAHTYGAL-----IHGVCKAGQMEAAQMLVNEM 391
>gi|357166198|ref|XP_003580632.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Brachypodium distachyon]
Length = 644
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 9/201 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + RM SG+ ++ ++ ++ + G+ +EAI + + N
Sbjct: 366 GRENEAMLLFERMKASGLELDAITYGVIVNCLCRFGKLDEAILCFRNCVEKGIAVNAIFY 425
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ + AG+VD+++E F+E+K G +P CY +L+ AK+ R DDA L M
Sbjct: 426 TSLIDGFGKAGMVDQAQELFEEMKVKGFVPDSYCYNVLIDGLAKAGRLDDACALYKRMED 485
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEY---VFDKLNCEGYGLGMRFYNALLEALWCL- 177
+ +I G F N + +++ + DK F N L CL
Sbjct: 486 DGCDQTVYTYTIIIDGLFKKHKNEEAIKFWNTMIDKGITPTAAAFRTFANGL-----CLS 540
Query: 178 GLRERAARVLDEATKRGLFPE 198
G RA R+LDE G+ PE
Sbjct: 541 GKFSRACRILDELAPMGVIPE 561
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 4/184 (2%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNERTLEAVLSVYCF 70
S M +GV + ++N +++ G + AI + M + R P+ + ++ YC
Sbjct: 197 SAMRLAGVEPSRVTYNCLLDGLANAGLLDTAINVFDAMSTEDRVRPDVVSYNILIKGYCR 256
Query: 71 AGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIH 128
AG ++ + ++ L P + Y L+ ++ + L EM + +I
Sbjct: 257 AGRAQDAMARLAHMREQAELSPDKVTYLTLMQLHYSEGTFSQCIRLFQEMEEMGMGKDIP 316
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
Q ++ G E VF+++ GY Y AL++ + G RE A +L
Sbjct: 317 QHAYVLVIGALCKEGKPFEGLAVFERMLKSGYPAKAAMYTALIDTMGKFG-RENEAMLLF 375
Query: 189 EATK 192
E K
Sbjct: 376 ERMK 379
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 103/237 (43%), Gaps = 38/237 (16%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ M G+ ++ ++N++I+ + + GR ++ + + EM+ + C+P+ T +++ +
Sbjct: 154 GLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCF 213
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN--------------------- 107
C G + + E F+E+K SG+ P+V+ Y L+ + K +
Sbjct: 214 CKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNE 273
Query: 108 --------------RWDDAYGLLDEMHTNRIS-NIHQVTGQMIKGEFDDESNWQMVEYVF 152
DA+ L DEM + N+ T +I G D E + E +F
Sbjct: 274 HTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTA-LIDGLCDVE-RIKEAEELF 331
Query: 153 DKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
K+ G + Y AL+ +RA +LDE RG+ P+L + +WS+
Sbjct: 332 GKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSL 388
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
F+A+ + FEEA++ + +M++ R P R+ +L + G D K F+++
Sbjct: 66 FDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMI 125
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIHQVTGQMIKGEFD 140
+G P+V Y +++ K + A GL +EM + ++ + G G D
Sbjct: 126 GAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLD 185
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
D Y F+++ + YN L+ G + E + GL P +
Sbjct: 186 D------TVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVV 239
Query: 201 RHNKLV 206
++ LV
Sbjct: 240 SYSTLV 245
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 87/215 (40%), Gaps = 23/215 (10%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+++E S+M V + S N ++ F + G+ + + + +M P T
Sbjct: 78 MFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYN 137
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT- 121
++ C G ++ + F+E+K G++P + Y ++ Y K R DD +EM +
Sbjct: 138 IMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSM 197
Query: 122 ---------NRISNIHQVTGQMIKG-EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
N + N G++ KG EF F ++ G + Y+ L+
Sbjct: 198 SCEPDVITYNTLINCFCKFGKLPKGLEF------------FREMKQSGLKPNVVSYSTLV 245
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+A + ++A + + + GL P + LV
Sbjct: 246 DAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLV 280
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 5/229 (2%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + + +M +GV N S+ A+I F + + A++ EM+ P+
Sbjct: 325 KEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTF 384
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ C ++ +K E++ GI + Y L+ Y KS + LL+EM I
Sbjct: 385 IWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDI 444
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+I G ++ + ++Y N G Y A+++ L E A
Sbjct: 445 EVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAAT 504
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
+ ++ ++GL P+ + L+ ++ +G A+++ +KM E+
Sbjct: 505 TLFEQMAQKGLVPDRTAYTSLIDG----KLKQGNVVQALALR-DKMAEI 548
>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
Length = 1024
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 5/216 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + +L MS SGVA + +NA+I + G+ EEA +E++ P+ T
Sbjct: 487 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 546
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A + Y G + E+ + F E+ G++P+ Y +L+ + K+ +A + +H
Sbjct: 547 GAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHA 606
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ Q I G + Q VF +L +G + Y++L+ G E
Sbjct: 607 LGVLPDVQTCSAFIHGLLKN-GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 665
Query: 182 RAARVLDEATKRGLFPELFRHNKLV----WSVDVHR 213
+A + DE +G+ P +F +N LV S D+ R
Sbjct: 666 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQR 701
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M+ SG+ N ++ +I A+ GR EEA + M P+ A++S
Sbjct: 460 LLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLS 519
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG ++E+ EI+ G+ P + + + Y+K+ + +A DEM + + +
Sbjct: 520 KAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNP 579
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ +I G F N +F +L+ G ++ +A + L G + A +V E
Sbjct: 580 LYTVLINGHF-KAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSE 638
Query: 190 ATKRGLFPELFRHNKLV 206
++GL P++F ++ L+
Sbjct: 639 LKEKGLVPDVFTYSSLI 655
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 2/216 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + M ++G+ + ++ +A+I+ F + G +E ++ M N T ++
Sbjct: 316 EAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLI 375
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G ++++ E + + + G P+ +C+L+ Y + + A LLDEM +
Sbjct: 376 HGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLV 435
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G MI G + + + +K+ G + Y+ L+ A G E A R
Sbjct: 436 PSAVSYGAMING-LCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARR 494
Query: 186 VLDEATKRGLFPELFRHNKLVWSVD-VHRMWEGGAY 220
+LD + G+ P++F +N ++ + +M E Y
Sbjct: 495 LLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTY 530
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 2/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +I R+ GV + + +A I + GR +EA+K + E+++ P+ T +++
Sbjct: 596 EALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 655
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S +C G V+++ E E+ GI P++ Y L+ KS A L D M +
Sbjct: 656 SGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLE 715
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
MI G E N +F ++ +G YNAL+ G E+A
Sbjct: 716 PDSVTYSTMIDGYCKSE-NVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 774
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ E ++G F N L+
Sbjct: 775 LFREMLQKG-FATTLSFNTLI 794
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ ++ A + G A + +EM++ +PNE V+ C G +DE+ E + +
Sbjct: 230 TYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSM 289
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G++P+ Y ++ A ++ R ++A +EM + + +I G F E +
Sbjct: 290 GEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDG-FMREGD 348
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
V + D + G + + YN L+ L G E+AA +L G P
Sbjct: 349 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKP 401
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 100/219 (45%), Gaps = 17/219 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + G A + SFN +I+ + + + +EA + + EM + P+ T V+ +C
Sbjct: 775 LFREMLQKGFA-TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHC 833
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG ++E+ F+E++ ++ + Y L+ Y K + + + L ++M +
Sbjct: 834 KAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEV 893
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGM----RFYNALLEALWCLGLRERAAR 185
G +I +++ +VE KL E G GM ++ L+ AL A++
Sbjct: 894 TYGLVIYAHCKEDN---LVEAF--KLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASK 948
Query: 186 VLDEATKRGLFPELFRHNKLVWSV-------DVHRMWEG 217
+LDE + GL P L N LV S + R++EG
Sbjct: 949 LLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEG 987
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 36/197 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ IL M G NS +F +IE + + A++ EMEK P+ +
Sbjct: 382 GKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 441
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ C + + + +++ SG+ P+V+ Y +L+ YA R ++A LLD M
Sbjct: 442 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGM-- 499
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+C G + YNA++ L G E
Sbjct: 500 ----------------------------------SCSGVAPDIFCYNAIISCLSKAGKME 525
Query: 182 RAARVLDEATKRGLFPE 198
A+ L E RGL P+
Sbjct: 526 EASTYLLEIQGRGLKPD 542
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 9/201 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G+ N ++ VIE Q G +EA++ M + PN T + + C
Sbjct: 250 VLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLC 309
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A ++E+K F+E++ +G+ P L+ + + D+ + D M + I I+
Sbjct: 310 RAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIP-INL 368
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE----RAAR 185
+T ++ + + + G R + L+E +C RE RA
Sbjct: 369 ITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEG-YC---REHNMGRALE 424
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+LDE KR L P + ++
Sbjct: 425 LLDEMEKRNLVPSAVSYGAMI 445
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 5/216 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + +L MS SGVA + +NA+I + G+ EEA +E++ P+ T
Sbjct: 398 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 457
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A + Y G + E+ + F E+ G++P+ Y +L+ + K+ +A + +H
Sbjct: 458 GAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHA 517
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ Q I G + Q VF +L +G + Y++L+ G E
Sbjct: 518 LGVLPDVQTCSAFIHGLLKN-GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 576
Query: 182 RAARVLDEATKRGLFPELFRHNKLV----WSVDVHR 213
+A + DE +G+ P +F +N LV S D+ R
Sbjct: 577 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQR 612
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 90/197 (45%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M+ SG+ N ++ +I + GR EEA + M P+ A++S
Sbjct: 371 LLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLS 430
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG ++E+ EI+ G+ P + + + Y+K+ + +A DEM + + +
Sbjct: 431 KAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNP 490
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ +I G F N +F L+ G ++ +A + L G + A +V E
Sbjct: 491 LYTVLINGHF-KAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSE 549
Query: 190 ATKRGLFPELFRHNKLV 206
++GL P++F ++ L+
Sbjct: 550 LKEKGLVPDVFTYSSLI 566
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 94/216 (43%), Gaps = 2/216 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + M ++G+ + ++ +A+I+ F + G +E ++ M N T ++
Sbjct: 227 EAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLI 286
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G ++++ E + + + G P+ +C+L+ Y + + A LLDEM +
Sbjct: 287 HGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLV 346
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G MI G + + + +K+ G + Y+ L+ G E A R
Sbjct: 347 PSAVSYGAMING-LCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARR 405
Query: 186 VLDEATKRGLFPELFRHNKLVWSVD-VHRMWEGGAY 220
+LD + G+ P++F +N ++ + +M E Y
Sbjct: 406 LLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTY 441
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 2/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +I + GV + + +A I + GR +EA+K + E+++ P+ T +++
Sbjct: 507 EALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 566
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S +C G V+++ E E+ GI P++ Y L+ KS A L D M +
Sbjct: 567 SGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLE 626
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
MI G E N +F ++ +G YNAL+ G E+A
Sbjct: 627 PDSVTYSTMIDGYCKSE-NVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 685
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ E ++G F N L+
Sbjct: 686 LFREMLQKG-FATTLSFNTLI 705
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 98/218 (44%), Gaps = 5/218 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + S + E G+ + +++++I F + G E+A + + EM PN
Sbjct: 538 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 597
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C +G + +++ F + G+ P + Y ++ Y KS +A+ L EM +
Sbjct: 598 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 657
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
+ V ++ G E + + +F ++ +G+ + F N L++ +C +
Sbjct: 658 KGVQPHSFVYNALVHG-CCKEGDMEKAMNLFREMLQKGFATTLSF-NTLIDG-YCKSCKI 714
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV-WSVDVHRMWEG 217
+ A+++ E + + P+ + ++ W +M E
Sbjct: 715 QEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEA 752
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 16/204 (7%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SFN +I+ + + + +EA + + EM + P+ T V+ +C AG ++E+ F+E+
Sbjct: 700 SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEM 759
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ ++ + Y L+ Y K + + + L ++M + G +I +++
Sbjct: 760 QERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDN- 818
Query: 145 WQMVEYVFDKLNCEGYGLGM----RFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
+VE KL E G GM ++ L+ AL A+++LDE + GL P L
Sbjct: 819 --LVEAF--KLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLA 874
Query: 201 RHNKLVWSV-------DVHRMWEG 217
+ LV S + R++EG
Sbjct: 875 ACSTLVRSFHEAGKMDEATRVFEG 898
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 83/220 (37%), Gaps = 37/220 (16%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ IL M G NS +F +IE + + A++ EMEK P+ +
Sbjct: 293 GKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 352
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ C + + + +++ SG+ P+V+ Y L+ YA R ++A LLD M
Sbjct: 353 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM-- 410
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+C G + YNA++ L G E
Sbjct: 411 ----------------------------------SCSGVAPDIFCYNAIISCLSKAGKME 436
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVD-VHRMWEGGAY 220
A+ L E RGL P+ + +M E Y
Sbjct: 437 EASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 476
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G L++E + M +G + + ++NA+++ + + R +EA+K EM P+ T
Sbjct: 292 GSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVT 351
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++S Y G++DE+ E ++ G P V Y LL+ + ++ + + A + +EM
Sbjct: 352 YNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMR 411
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + T + + + + +FD++N G + +N LL G+
Sbjct: 412 -NAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMD 470
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ V E + G PE N L+
Sbjct: 471 SEVSGVFKEMKRAGFVPERETFNTLI 496
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 1/188 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + ++M+E G + ++ ++ F + G+ E A+ + EM C PN T
Sbjct: 363 GMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTF 422
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A + +Y G E + F EI G+ P ++ + LLAV+ ++ + G+ EM
Sbjct: 423 NAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR 482
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I + +++ V+ ++ G + YN +L AL G+ E
Sbjct: 483 AGFVPERETFNTLISA-YSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWE 541
Query: 182 RAARVLDE 189
++ +VL E
Sbjct: 542 QSEKVLAE 549
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 9/210 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + M +G ++FN +I A+ + G FE+A+ Y M P+ T
Sbjct: 468 GMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTY 527
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
VL+ G+ ++S++ E++ P+ + YC LL YA + L +E+++
Sbjct: 528 NTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYS 587
Query: 122 NRISNIHQVTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
I + ++ K + E+ E F +L G+ + N+++
Sbjct: 588 GVIEPRAVLLKTLVLVCSKCDLLPEA-----ERAFSELKERGFSPDITTLNSMVSIYGRR 642
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVW 207
+ +A VLD +RG P + +N L++
Sbjct: 643 QMVAKANGVLDYMKERGFTPSMATYNSLMY 672
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 100/212 (47%), Gaps = 1/212 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE +L+ M +G + + ++N++I A+ + G +EA++ +M + P+ T +
Sbjct: 331 KEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTL 390
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
LS + AG V+ + F+E++++G P++ + + +Y ++ + + DE++ +
Sbjct: 391 LSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGL 450
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
S VT + F V VF ++ G+ +N L+ A G E+A
Sbjct: 451 SP-DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
V G+ P+L +N ++ ++ MWE
Sbjct: 510 TVYRRMLDAGVTPDLSTYNTVLAALARGGMWE 541
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 90/194 (46%), Gaps = 2/194 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+ E G + + S+ ++I AF GR+ EA+ + +ME+ C P T +L+V+ G
Sbjct: 199 LQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGT 258
Query: 74 V-DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++ +++KS GI P Y L+ + + +A + +EM S +VT
Sbjct: 259 PWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFS-YDKVTY 317
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+ + + V +++ G+ + YN+L+ A G+ + A + ++ +
Sbjct: 318 NALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAE 377
Query: 193 RGLFPELFRHNKLV 206
+G P++F + L+
Sbjct: 378 KGTKPDVFTYTTLL 391
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 95/206 (46%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + +++ +M G+A ++ ++N +I ++G +EA + + EM+ ++ T
Sbjct: 257 GTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVT 316
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L VY + E+ + E+ +G PS++ Y L++ YA+ D+A L ++M
Sbjct: 317 YNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQM- 375
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + T + F+ + +F+++ G + +NA ++ G
Sbjct: 376 AEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKF 435
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
++ DE GL P++ N L+
Sbjct: 436 TEMMKIFDEINVCGLSPDIVTWNTLL 461
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ I S M SG+ + ++N I ++ FEEAI M K C PN+ T ++
Sbjct: 716 RDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSI 775
Query: 65 LSVYCFAGLVDESK 78
+ YC DE+K
Sbjct: 776 VDGYCKLNRKDEAK 789
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 55/114 (48%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ +L M E G + ++N+++ + F ++ + E+ P+ + V+
Sbjct: 647 KANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVI 706
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
YC + ++ F E+++SGI+P V+ Y + YA + +++A G++ M
Sbjct: 707 YAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYM 760
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 52/116 (44%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + + IL + G+ + S+N VI A+ + R +A + + EM P+ T
Sbjct: 680 FGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNT 739
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ Y + +E+ + + G P+ Y ++ Y K NR D+A ++++
Sbjct: 740 FIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDL 795
>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
Length = 439
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 1/173 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L M + N +F+A+I+A+ + G+ + Y M ++ DPN T +++ C
Sbjct: 176 LHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCM 235
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
VDE+ + + S G P+V+ Y L + KS+R DD LLD+M ++
Sbjct: 236 HNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVS 295
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+IKG F + VF + G +R YN +L L+ G E+A
Sbjct: 296 CNTLIKGYF-QAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKA 347
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 1/194 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM + G++ N +++++I + GR +A + EM+ + +PN T A++ Y
Sbjct: 140 VLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYA 199
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + + ++ + I P+V Y L+ NR D+A +LD M + + +
Sbjct: 200 KRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTP-NV 258
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT + F S + D + G N L++ + G + A V
Sbjct: 259 VTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGY 318
Query: 190 ATKRGLFPELFRHN 203
T GL P + +N
Sbjct: 319 MTSNGLIPNIRSYN 332
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 57/115 (49%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + GVA N+ S N +I+ + Q G+ + A+ + M PN R+ VL+
Sbjct: 280 LLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLF 339
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
G V+++ +F+ ++ + ++ Y +++ K+ +AY L ++ R+
Sbjct: 340 ANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRV 394
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+ +G+ N S+N V+ G E+A+ + M+K R D + T ++ C A +
Sbjct: 319 MTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACM 378
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLA 101
V E+ + F ++K + P Y +++A
Sbjct: 379 VKEAYDLFYKLKFKRVEPDFKAYTIMIA 406
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 51/118 (43%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L M G N +++ + F + R ++ IK +M + N + ++
Sbjct: 241 EAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLI 300
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
Y AG +D + F + S+G++P++ Y ++LA + + A + M R
Sbjct: 301 KGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTR 358
>gi|242091740|ref|XP_002436360.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
gi|241914583|gb|EER87727.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
Length = 999
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 1/194 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M E+G N ++ VI +F + E+A+ + EM + R P E T ++S G
Sbjct: 269 QMREAGALPNQFTYTVVISSFVKEDLLEKAMDVFGEMRQCRFVPEEATYSLLISASSRHG 328
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+++ F+E+K+ GI+PS LLA+Y K+ + A LL EM +++ + G
Sbjct: 329 KGEQALRLFEEMKAQGIVPSNYTCASLLALYYKNEDYSKALSLLSEMENSKVIPDEVIYG 388
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+I+ + ++ E F+K+ G + Y A+ + G +RA VL+
Sbjct: 389 ILIR-IYGKLGLYEEAEQTFEKIEKAGLLSDEQTYVAMAQVHLNAGDYDRALEVLESMMM 447
Query: 193 RGLFPELFRHNKLV 206
R + P F ++ ++
Sbjct: 448 RNVKPSHFSYSAIL 461
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+I RM SG +++ +FN +I F +GG+ ++A++ + +++ +E+ +LS+Y
Sbjct: 733 SIYDRMISSGTSQSMQTFNLMISVFGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLSLY 792
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AG E+ F+ +K GI P + + ++ YA S +A EM
Sbjct: 793 GKAGRHQEASLMFKRMKEDGIRPGKISFNSMINAYATSGLCSEAKSTFHEMQ 844
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++E + RM E G+ SFN++I A+ G EA + EM+ P+ +
Sbjct: 795 AGRHQEASLMFKRMKEDGIRPGKISFNSMINAYATSGLCSEAKSTFHEMQDCGHAPDSFS 854
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ Y A L E++E + + +S PS + L+ + K + +A + ++M
Sbjct: 855 YLALIRAYTEAKLYMEAEEAIRMMLNSSTTPSCPHFSHLIFAFLKEGQIGEAQRIYNQM 913
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 57/119 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M G+ ++ + +++ + + + +A+ EME + P+E ++ +Y
Sbjct: 336 LFEEMKAQGIVPSNYTCASLLALYYKNEDYSKALSLLSEMENSKVIPDEVIYGILIRIYG 395
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
GL +E+++ F++I+ +G+L Y + V+ + +D A +L+ M + H
Sbjct: 396 KLGLYEEAEQTFEKIEKAGLLSDEQTYVAMAQVHLNAGDYDRALEVLESMMMRNVKPSH 454
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 93/217 (42%), Gaps = 24/217 (11%)
Query: 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
++ +NA+++AF + G+ E+A ++EM + + T+ +++ G + + +
Sbjct: 677 ANVYNAMVDAFCKCGKTEDAYHLFMEMVDQGSNRDAVTVSILVTHLTKHGKLHSAISIYD 736
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL-----------DEMHTNRISNIHQVT 131
+ SSG S+ + ++++V+ K + D A + ++M+TN +S
Sbjct: 737 RMISSGTSQSMQTFNLMISVFGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLS------ 790
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+ Q +F ++ +G G +N+++ A GL A E
Sbjct: 791 ------LYGKAGRHQEASLMFKRMKEDGIRPGKISFNSMINAYATSGLCSEAKSTFHEMQ 844
Query: 192 KRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLN 228
G P+ F + L+ + +++ A AI + LN
Sbjct: 845 DCGHAPDSFSYLALIRAYTEAKLYM-EAEEAIRMMLN 880
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
LY E + + M S + F+ +I AF + G+ EA + Y +M++ P+
Sbjct: 867 LYMEAEEAIRMMLNSSTTPSCPHFSHLIFAFLKEGQIGEAQRIYNQMKEASVAPDLACCR 926
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY GL+DE ++ + S + P +Y + R +A +LD + +
Sbjct: 927 TMMRVYMEHGLMDEGITLYETTRGS-LKPDSFILSAAFHLYDHAGRESEAQDVLDAISVS 985
Query: 123 RIS 125
S
Sbjct: 986 GTS 988
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y + ++LS M S V + + +I + + G +EEA + + ++EK +E+T A
Sbjct: 365 YSKALSLLSEMENSKVIPDEVIYGILIRIYGKLGLYEEAEQTFEKIEKAGLLSDEQTYVA 424
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103
+ V+ AG D + E + + + PS Y +L Y
Sbjct: 425 MAQVHLNAGDYDRALEVLESMMMRNVKPSHFSYSAILRCY 464
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 50/111 (45%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G R++ + + ++ + G+ AI Y M + +T ++SV+ G
Sbjct: 703 MVDQGSNRDAVTVSILVTHLTKHGKLHSAISIYDRMISSGTSQSMQTFNLMISVFGKGGK 762
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+D++ E F + G+ Y +L++Y K+ R +A + M + I
Sbjct: 763 LDKAVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQEASLMFKRMKEDGI 813
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +E IL +M E G+ + ++N +I+ + G +A EM + P T
Sbjct: 319 GGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVST 378
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ G +DE+ +++ SGI+P + Y +L+ Y + A+ L DEM
Sbjct: 379 YNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMI 438
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ I VT + + + + +F+K+ EG + +NAL++ G
Sbjct: 439 SKGIQPT-LVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNL 497
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+RA +L E KR + P+ +N L+
Sbjct: 498 DRAFALLKEMDKRNIVPDEVTYNTLM 523
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K + ++ G + + FNA+I+ G + A EM+K P+E T +
Sbjct: 463 KAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTL 522
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ C G V+E++E +E+K GI P + Y L++ Y+K +DA+ + DEM
Sbjct: 523 MQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEM 577
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 1/206 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + + M GV N ++N VI + GR E A M+ +P+ T
Sbjct: 250 GKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTY 309
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++S C G ++E+ +++K G+LP+ + Y L+ Y A+G DEM
Sbjct: 310 GSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVR 369
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I +I F E + + + G YN L+ G +
Sbjct: 370 RAILPTVSTYNLLIHALF-LEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAK 428
Query: 182 RAARVLDEATKRGLFPELFRHNKLVW 207
+A + DE +G+ P L + L++
Sbjct: 429 KAFNLHDEMISKGIQPTLVTYTSLIY 454
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 1/196 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E GV ++FNA++ F + + E Y EM +++ T +++V C G
Sbjct: 192 MKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGK 251
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ ++K+ +++ G+ P+V+ Y ++ Y R + A +LD M + G
Sbjct: 252 LKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGS 311
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G + + +K+ G YN L++ G +A DE +R
Sbjct: 312 LISG-MCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRR 370
Query: 194 GLFPELFRHNKLVWSV 209
+ P + +N L+ ++
Sbjct: 371 AILPTVSTYNLLIHAL 386
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L M + + + ++N +++ + G+ EEA + EM++ P+ + ++S Y
Sbjct: 502 ALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGY 561
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G ++++ E+ S G P+++ Y L+ K+ + D A LL EM + I+
Sbjct: 562 SKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDD 621
Query: 129 QVTGQMIK--GEFDDES 143
+I+ G+ DD S
Sbjct: 622 STYFSLIEGIGKVDDSS 638
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 5/216 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + +L MS SGVA + +NA+I + G+ EEA +E++ P+ T
Sbjct: 199 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 258
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A + Y G + E+ + F E+ G++P+ Y +L+ + K+ +A + +H
Sbjct: 259 GAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHA 318
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ Q I G + Q VF +L +G + Y++L+ G E
Sbjct: 319 LGVLPDVQTCSAFIHGLLKN-GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 377
Query: 182 RAARVLDEATKRGLFPELFRHNKLV----WSVDVHR 213
+A + DE +G+ P +F +N LV S D+ R
Sbjct: 378 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQR 413
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 90/197 (45%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M+ SG+ N ++ +I + GR EEA + M P+ A++S
Sbjct: 172 LLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLS 231
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG ++E+ EI+ G+ P + + + Y+K+ + +A DEM + + +
Sbjct: 232 KAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNP 291
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ +I G F N +F L+ G ++ +A + L G + A +V E
Sbjct: 292 LYTVLINGHF-KAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSE 350
Query: 190 ATKRGLFPELFRHNKLV 206
++GL P++F ++ L+
Sbjct: 351 LKEKGLVPDVFTYSSLI 367
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 94/216 (43%), Gaps = 2/216 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + M ++G+ + ++ +A+I+ F + G +E ++ M N T ++
Sbjct: 28 EAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLI 87
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G ++++ E + + + G P+ +C+L+ Y + + A LLDEM +
Sbjct: 88 HGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLV 147
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G MI G + + + +K+ G + Y+ L+ G E A R
Sbjct: 148 PSAVSYGAMING-LCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARR 206
Query: 186 VLDEATKRGLFPELFRHNKLVWSVD-VHRMWEGGAY 220
+LD + G+ P++F +N ++ + +M E Y
Sbjct: 207 LLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTY 242
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 2/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +I + GV + + +A I + GR +EA+K + E+++ P+ T +++
Sbjct: 308 EALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 367
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S +C G V+++ E E+ GI P++ Y L+ KS A L D M +
Sbjct: 368 SGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLE 427
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
MI G E N +F ++ +G YNAL+ G E+A
Sbjct: 428 PDSVTYSTMIDGYCKSE-NVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 486
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ E ++G F N L+
Sbjct: 487 LFREMLQKG-FATTLSFNTLI 506
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 98/217 (45%), Gaps = 5/217 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + S + E G+ + +++++I F + G E+A + + EM PN
Sbjct: 339 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 398
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C +G + +++ F + G+ P + Y ++ Y KS +A+ L EM +
Sbjct: 399 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 458
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
+ V ++ G E + + +F ++ +G+ + F N L++ +C +
Sbjct: 459 KGVQPHSFVYNALVHG-CCKEGDMEKAMNLFREMLQKGFATTLSF-NTLIDG-YCKSCKI 515
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV-WSVDVHRMWE 216
+ A+++ E + + P+ + ++ W +M E
Sbjct: 516 QEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEE 552
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 83/220 (37%), Gaps = 37/220 (16%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ IL M G NS +F +IE + + A++ EMEK P+ +
Sbjct: 94 GKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 153
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ C + + + +++ SG+ P+V+ Y L+ YA R ++A LLD M
Sbjct: 154 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM-- 211
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+C G + YNA++ L G E
Sbjct: 212 ----------------------------------SCSGVAPDIFCYNAIISCLSKAGKME 237
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVD-VHRMWEGGAY 220
A+ L E RGL P+ + +M E Y
Sbjct: 238 EASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 277
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/214 (19%), Positives = 86/214 (40%), Gaps = 35/214 (16%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + G A + SFN +I+ + + + +EA + + EM + P+ T V+ +C
Sbjct: 487 LFREMLQKGFA-TTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHC 545
Query: 70 FAGLVDESKEQFQEIK-----------------SSGILPSVMCYCMLLAVYAKSNRWDDA 112
AG ++E+ F+E++ + G+ P + Y +++ + K + +A
Sbjct: 546 KAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEA 605
Query: 113 YGLLDEMHTNRISNIHQVTGQMIKGEFDD--------ESNWQMVEYVFDKLNCEGYGLGM 164
+ L DE+ G + KG D + + D++ G +
Sbjct: 606 FKLRDEVVGK---------GMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSL 656
Query: 165 RFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+ L+ + G + A RV + GL P+
Sbjct: 657 AACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 690
>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 19/232 (8%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
SG++ + + AVI A GR EA + EM P R A+L Y AGL+ +
Sbjct: 299 SGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKD 358
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136
++ E++ SG+ P+ Y L+ Y + RW+ A +L EM + + V +++
Sbjct: 359 AEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRIL- 417
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
+ D+ WQ V ++ G FYN +++ + A D G+
Sbjct: 418 SSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIE 477
Query: 197 PELFRHNKLVWSVDVH--------------RMWEGGAYTAISVWLNKMYEMF 234
P+ N L +D H M EGG Y+ + N M F
Sbjct: 478 PDTVTWNTL---IDCHCRAGKHDRAEELFEEMMEGG-YSPCNTTFNIMINSF 525
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 34/240 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL K+ + ++S M SGV+ N +++ +I+A+ GR+E A EME PN
Sbjct: 353 AGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYV 412
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+LS Y G +S + +E+++SG+ P + Y +++ + K N D A D M
Sbjct: 413 FSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRML 472
Query: 121 T----------NRISNIHQVTGQMIKGE------------------------FDDESNWQ 146
+ N + + H G+ + E F D+ W
Sbjct: 473 SEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWD 532
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V+ + + +G Y L++ G A LD+ GL P +N L+
Sbjct: 533 DVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALI 592
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 1/211 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +AI M ++G+ + ++NA++ + + G ++A EME+ PNE+T ++
Sbjct: 323 EAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLI 382
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
Y AG + ++ +E+++S + P+ + +L+ Y W ++ +L EM + +
Sbjct: 383 DAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVR 442
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
MI F + FD++ EG +N L++ G +RA
Sbjct: 443 PDRVFYNVMID-TFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEE 501
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ +E + G P N ++ S W+
Sbjct: 502 LFEEMMEGGYSPCNTTFNIMINSFGDQERWD 532
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 76/198 (38%), Gaps = 36/198 (18%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A RM G+ ++ ++N +I+ + G+ + A + + EM + P T +++ +
Sbjct: 466 ATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSF 525
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
D+ K ++S G++P+ + Y L+ +Y KS R++DA LD+M
Sbjct: 526 GDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMK-------- 577
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
G YNAL+ A GL E+A
Sbjct: 578 ----------------------------AAGLKPSSTMYNALINAYAQRGLSEQAVSAFR 609
Query: 189 EATKRGLFPELFRHNKLV 206
GL P L N L+
Sbjct: 610 AMRVDGLKPSLLALNSLI 627
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 49/105 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + M E G + + +FN +I +F R+++ M PN T
Sbjct: 493 AGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVT 552
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
++ +Y +G +++ E ++K++G+ PS Y L+ YA+
Sbjct: 553 YTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQ 597
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + L M +G+ +S +NA+I A+ Q G E+A+ A+ M P+
Sbjct: 563 SGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLA 622
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
L ++++ + E+ Q +K + + P V+ Y L+ + ++D + +EM
Sbjct: 623 LNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPSVYEEM 681
Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 103/239 (43%), Gaps = 17/239 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAI--KAYVEMEKVRCDPNERTLEAVLSV 67
+++RM + G + +++ +I + + R + AI K Y E+E + + + + ++
Sbjct: 220 LITRMRQDGYPSDFVNYSLIIRSLMRKNRVDSAILQKLYREIECDKLELDVQLSNDIIVG 279
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN--RWDDAYGLLDEMHTNRIS 125
+ AG + ++ E ++ SG+ SV ++ ++A N R +A + +EM N +
Sbjct: 280 FAKAGDLSKALEFLGVVQGSGL--SVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLK 337
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +++G + + E+V ++ G + Y+ L++A G E A
Sbjct: 338 PRTRAYNALLRG-YVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARI 396
Query: 186 VLDEATKRGLFPELFRHNKLV--------W--SVDVHRMWEGGAYTAISVWLNKMYEMF 234
VL E + P + ++++ W S V R E V+ N M + F
Sbjct: 397 VLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTF 455
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E I++ M++ G+ + ++NA+I + GR+ A +EM + P+ T
Sbjct: 167 GLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTY 226
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L C E+KE F E+ G++P ++ + L+AV++++ D A +M
Sbjct: 227 NTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKK 286
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVE--YVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + + ++ G N M+E + D++ +G L + YN +L L +
Sbjct: 287 FGLVPDNVIYTVLMHGYC---RNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKM 343
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
A ++ DE +RG P+ + L+
Sbjct: 344 LTDADKLFDEMVERGALPDFYTFTTLI 370
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 85/198 (42%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M++ + + ++N +I+ F + G E+A + + M + PN T +++ Y
Sbjct: 384 SLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAY 443
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G V E+ + + GI P+++ ++ Y +S A L M ++ H
Sbjct: 444 CSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDH 503
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+I G F E N +K+ EG + YN ++ G + A VL
Sbjct: 504 ISYNTLING-FVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLR 562
Query: 189 EATKRGLFPELFRHNKLV 206
+ ++G+ P+ + L+
Sbjct: 563 KMIEKGINPDRSTYTALI 580
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
SG+ N + N ++ A + G+F++ EME + T ++ YC GL++E
Sbjct: 112 SGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEE 171
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ E + G+ PS+ Y ++ K R+ A G+L EM
Sbjct: 172 AFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 214
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L RM GVA + S+N +I F + ++A +MEK P+ T V++ +C
Sbjct: 491 LGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCR 550
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G + E++ +++ GI P Y L+ + + ++A+ DEM
Sbjct: 551 QGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEM 599
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 12/192 (6%)
Query: 21 RNSDSFNAVIEAFRQGGRFE-EAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKE 79
R SD+ ++ R+ G E ++A V C N + ++ Y A + E E
Sbjct: 10 RLSDAQALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQARKLREGTE 69
Query: 80 QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIHQ----VTGQM 134
F+ ++S G L S+ LL K + + A+ + E+ + I N++ V
Sbjct: 70 AFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALC 129
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
G+FDD V+ ++ G M YN L+ A GL E A +++ +G
Sbjct: 130 KDGKFDD------VKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKG 183
Query: 195 LFPELFRHNKLV 206
L P LF +N ++
Sbjct: 184 LKPSLFTYNAII 195
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 3/178 (1%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N ++ +I A+ G EA + + M + P T V+ YC +G ++ E
Sbjct: 432 NHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFL 491
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-NRISNIHQVTGQMIKGEFD 140
+ + G+ P + Y L+ + + + D A+ +++M + +I +T ++ F
Sbjct: 492 GRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDI--ITYNVVMNGFC 549
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+ Q E V K+ +G Y AL+ A R DE +RG P+
Sbjct: 550 RQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPD 607
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 98/206 (47%), Gaps = 2/206 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + +M ++G++ + +N +I+ + + GR +EA + Y EM V +P+ T
Sbjct: 22 GKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTY 81
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L+ +C + E+ E F+ + G P V+ Y +++ K+ + +A +L
Sbjct: 82 NSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMI 141
Query: 122 NRISNIHQVT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
R + + V +I G DE N + + +++ +GY YN +L L +G
Sbjct: 142 ERGCSANTVAYNALINGLCKDE-NIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKV 200
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A + D RG P++ +N L+
Sbjct: 201 SEAKQFFDSMPSRGYSPDVVAYNGLL 226
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 85/196 (43%), Gaps = 1/196 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + +M SG A N +++ V+ + + ++A K EM K+ P+ T +L
Sbjct: 272 EAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILL 331
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C LVD++ E F + +G P ++ Y ++L K+N+ DA L D M ++
Sbjct: 332 DGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLV 391
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
VT ++ + + D++ C G YN L+ L G +A R
Sbjct: 392 P-DVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADR 450
Query: 186 VLDEATKRGLFPELFR 201
+ ++G + F+
Sbjct: 451 LTQAMKEKGFLSDCFK 466
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + + +M E G + N+ ++NA+I + E A K EM P+ T
Sbjct: 127 GKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNIT 186
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+LS C G V E+K+ F + S G P V+ Y LL K + D+A L ++
Sbjct: 187 YNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVI 246
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
VT I +SN E +F K+ G Y+ +L
Sbjct: 247 AKGYMP-DTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKV 305
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A +VL+E +K G P++ +N L+
Sbjct: 306 DDAHKVLEEMSKIGAVPDVVTYNILL 331
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + G ++ ++N+++ + +EA + + +M C PN T
Sbjct: 233 GKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATY 292
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
VLS +C A VD++ + +E+ G +P V+ Y +LL K+N D A+ L M
Sbjct: 293 SIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVD 352
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N + V+ ++ + +FD++ + +N L++ L G +
Sbjct: 353 NGCAP-DIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLD 411
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +LD+ T G P+ +N L+
Sbjct: 412 EAKDLLDQMTCSGCAPDYVAYNTLM 436
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 80/187 (42%)
Query: 20 ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKE 79
+ N +F V+++F + G+ + K + +M P+ ++ Y G VDE+
Sbjct: 5 SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64
Query: 80 QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF 139
++E+ S G+ PS+ Y LL + K + +A L M +I G
Sbjct: 65 LYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLC 124
Query: 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
+ +E +F K+ G YNAL+ L ERA ++L+E +G P+
Sbjct: 125 KTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDN 184
Query: 200 FRHNKLV 206
+N ++
Sbjct: 185 ITYNTIL 191
>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
Length = 683
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M +SGV + ++N+++ F G+ +EAI +M +P+ T +++ C
Sbjct: 145 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLC 204
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + +GLLD M N I H
Sbjct: 205 KNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 264
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V ++ + + + VF K+ +G Y A++ L G E A ++
Sbjct: 265 VFSILVCA-YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 323
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
GL P +N L+ + WE
Sbjct: 324 MIDEGLSPGNIVYNSLIHGLCTCNKWE 350
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 1/180 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ ++ M + G+ N+ FN++I++ + GR E+ K + M ++ P+ T ++
Sbjct: 353 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 412
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
YC AG +DE+ + + S G+ P + Y L+ Y K +R DA L EM ++ +S
Sbjct: 413 YCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPD 472
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+++G F E ++ + G L + YN +L L L + A R+
Sbjct: 473 IITYNIILQGLFQTRRTAAAKE-LYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMF 531
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 95/215 (44%), Gaps = 21/215 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M +G+ N F+ ++ A+ + + EEA+ + +M + +PN T
Sbjct: 242 GALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTY 301
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
AV+ + C +G V+++ F+++ G+ P + Y L+ N+W+ A L+ EM
Sbjct: 302 GAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD 361
Query: 120 --------HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
N I + H G++I+ E +FD + G + Y+ L+
Sbjct: 362 RGICLNTIFFNSIIDSHCKEGRVIES-----------EKLFDLMVRIGVKPDIITYSTLI 410
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ G + A ++L G+ P+ ++ L+
Sbjct: 411 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLI 445
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 38/204 (18%)
Query: 5 KECQAILSRMSESGVARNSD--SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+E +L M++ G D S++ VI F + G ++ Y EM R PN T
Sbjct: 68 QEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYN 127
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++++ C A VD++ E + SG++P M Y ++ + S + +A L +M +
Sbjct: 128 SIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRS- 186
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+G + YN+L++ L G
Sbjct: 187 -----------------------------------DGVEPDVVTYNSLMDYLCKNGRCTE 211
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A ++ D TKRGL PE+ + L+
Sbjct: 212 ARKIFDSMTKRGLKPEITTYGTLL 235
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV + ++N++++ + GR EA K + M K P T
Sbjct: 172 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTY 231
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P+ + +L+ YAK + ++A + +M
Sbjct: 232 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 291
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N + VT + G + F+++ EG G YN+L+ L E
Sbjct: 292 QGL-NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 350
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
RA ++ E RG+ N ++ S
Sbjct: 351 RAEELILEMLDRGICLNTIFFNSIIDS 377
>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 549
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 2/208 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
++M + GV +++ + N +++ + + A A+ E+ + P+E + ++ +C
Sbjct: 218 FNKMDQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQEL-RGSVPPDESSFNTLVHGWCK 276
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
A +++E+++ +E++ G PSV+ Y L+ Y + Y +L+EM + + +
Sbjct: 277 ARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPP-NVI 335
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
T ++ Q +FDK+ +G FYN+L+ L G E A V+D+
Sbjct: 336 TYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDKM 395
Query: 191 TKRGLFPELFRHNKLVWSVDVHRMWEGG 218
G+ P + N L+ + H E
Sbjct: 396 RMTGVRPTVATFNTLISAACDHSQAENA 423
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ E + ++ M E G + ++ ++IEA+ F+ EM C PN T
Sbjct: 279 MMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYT 338
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ AG E+ + F +++ G P Y L+ + ++ R +DA ++D+M
Sbjct: 339 IVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDKMRMT 398
Query: 123 RISNIHQVTGQMIKGEFD 140
+ +I D
Sbjct: 399 GVRPTVATFNTLISAACD 416
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 59/116 (50%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ AIL+ M G N ++ V+ A + GR +EA+ + ++ C P+ +
Sbjct: 315 FQTVYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNS 374
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ + AG ++++ +++ +G+ P+V + L++ ++ ++A +L +M
Sbjct: 375 LIYILGRAGRLEDANSVVDKMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKM 430
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 14/156 (8%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +++ +M +GV +FN +I A + E A+K V+ME+ C P+ +T
Sbjct: 382 AGRLEDANSVVDKMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKPDIKT 441
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L + C + + + I P Y +L+ ++ + + L+EM
Sbjct: 442 YTPLLKLCCKRQWIKVLRFLICHMFRKDITPDFSTYTLLVTWLCRNGKPAQSCLFLEEM- 500
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN 156
++KG + + +V DK N
Sbjct: 501 -------------VLKGFAPKKETFDLVAEKLDKAN 523
>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
Length = 341
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ Q +L M E+G A + ++N +I F + G ++A+ +VEM C P+ T +V
Sbjct: 165 EQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSV 224
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH---- 120
+ +C AG V+E+ + F E+K+ GI P+ Y + K+ R DA+ L EM
Sbjct: 225 VDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGL 284
Query: 121 TNRISNIHQVTG--QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ IS + ++ ++ KG+ +Q++ + +K G+ + +N + EAL
Sbjct: 285 VDAISYVALISTICKLGKGKL----GFQLLREMLEK----GFKPNLVTFNVVFEAL 332
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 95/213 (44%), Gaps = 13/213 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ A+L M + V N+ +N ++ + G+ +EA+ M C P+ T
Sbjct: 18 GETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTY 77
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL-AVYAKSN---RWDDAYGLLD 117
+++ C G +++++ + +++ ++ Y L+ + K N R + A+ L +
Sbjct: 78 NILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFE 137
Query: 118 EM----HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
EM HT V +++ + D+++ + V D ++ G + YN L+
Sbjct: 138 EMVDKGHTPTSVTYTVVIDALLRVKMDEQA-----QKVLDLMHENGCAFDLVTYNMLINR 192
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G+ ++A + E RG P++ +N +V
Sbjct: 193 FAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVV 225
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 11/192 (5%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N+ +++ ++ + + G +A+ M+ N + +L+ C G E+ +
Sbjct: 3 NAFTYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLL 62
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIHQVTGQMIK 136
+ ++ P + Y +L+ K R +DA GL++ M T+ ++ + G K
Sbjct: 63 HSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRK 122
Query: 137 GE--FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
G F E +++ E + DK G+ Y +++AL + + E+A +VLD + G
Sbjct: 123 GNGRFRVERAFRLFEEMVDK----GHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENG 178
Query: 195 LFPELFRHNKLV 206
+L +N L+
Sbjct: 179 CAFDLVTYNMLI 190
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ + + M G + ++N+V++ F + G+ EEA K + EM+ PN RT
Sbjct: 196 AGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARGIFPNGRT 255
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ AG + ++ E++ G++ ++ Y L++ K + + LL EM
Sbjct: 256 YTSITDACLKAGRMQDAHAYLVEMRKEGLVDAI-SYVALISTICKLGKGKLGFQLLREM 313
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 10/198 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + G S ++ VI+A + E+A K M + C + T +++ +
Sbjct: 135 LFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFA 194
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI----S 125
AG++D++ + F E+ + G +P V+ Y ++ + K+ + ++A L EM I
Sbjct: 195 KAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARGIFPNGR 254
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+T +K +++ +VE + EG + Y AL+ + LG + +
Sbjct: 255 TYTSITDACLKAGRMQDAHAYLVE-----MRKEGLVDAIS-YVALISTICKLGKGKLGFQ 308
Query: 186 VLDEATKRGLFPELFRHN 203
+L E ++G P L N
Sbjct: 309 LLREMLEKGFKPNLVTFN 326
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 106/231 (45%), Gaps = 6/231 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L M + G+ N ++N++I+ F G A + ++ M +P+E +
Sbjct: 321 GKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISY 380
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC V E+ + E+ G P+V Y LL + + DA L M T
Sbjct: 381 TTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKT 440
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+S Q+ G + G ++ ++ +E +F++L + L + Y+ L++ L G E
Sbjct: 441 YGVSANSQIYGIFLDGLCKNDCLFEAME-LFNELKSYNFKLNIENYSCLIDGLCKAGKLE 499
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
A + ++ ++ GL P++ +N + +H + G ++ KM E
Sbjct: 500 TAWELFEKLSQEGLQPDVVTYN-----IMIHGFCKVGQVDNANILFEKMEE 545
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 7/207 (3%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK------VRCDPNER 59
E + RM + G N+ ++ +I+ Q G A+K + EM V C P
Sbjct: 179 EATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVI 238
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T ++ C G DE+KE F+E+K+ G++P V+ Y L+ + + +WD + L DEM
Sbjct: 239 TYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEM 298
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ VT ++ E + + + + G + YN+L++ +G
Sbjct: 299 VDQGVQP-DMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGD 357
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
A + +GL P+ + L+
Sbjct: 358 LNSARELFLSMPSKGLEPDEISYTTLI 384
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 7/207 (3%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A ++ + G N ++ +I+ R EA + ++ M+K+ C PN T ++
Sbjct: 144 EALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLI 203
Query: 66 SVYCFAGLVDES----KEQFQEIKSSGI--LPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G V+ + KE + G+ P V+ Y +++ K R D+A L +EM
Sbjct: 204 KGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEM 263
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +I G F W +++FD++ +G M ++ L++ L G
Sbjct: 264 KAQGMIPDVISYSTLIHG-FCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGK 322
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
A ++L+ +RG+ P L +N L+
Sbjct: 323 VTEAKKLLEVMIQRGIVPNLITYNSLI 349
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 56/121 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + M GV+ NS + ++ + EA++ + E++ N
Sbjct: 426 GKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENY 485
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C AG ++ + E F+++ G+ P V+ Y +++ + K + D+A L ++M
Sbjct: 486 SCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEE 545
Query: 122 N 122
N
Sbjct: 546 N 546
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+ S M++ G+ + +F ++I A + G E+A+ +M + NE T
Sbjct: 272 GCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTF 331
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ +C G +D++ +E++ GI PSV+CY L+ Y K R D A L+ EM
Sbjct: 332 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA 391
Query: 122 NRI 124
R+
Sbjct: 392 KRV 394
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 12/203 (5%)
Query: 10 ILSRMSESGVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++S M E G A+ N +FN+++ + GR E A K + EM + P+ + +LS Y
Sbjct: 209 VVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGY 268
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNR 123
C G + ES F E+ G++P V+ + L+ K+ + A L+ +M N
Sbjct: 269 CKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNE 328
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
++ + G KG DD +++ G + YNAL+ LG + A
Sbjct: 329 VTFTALIDGFCKKGFLDD------ALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 382
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
++ E + + P++ ++ ++
Sbjct: 383 RELIREMEAKRVKPDVVTYSTII 405
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 37/200 (18%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
LS M GVA N ++N ++ A GR EEA+ +M C PN T +++ +C
Sbjct: 140 LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCR 199
Query: 71 AGLVDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +D ++ ++ G P+++ + ++ K+ R + A
Sbjct: 200 AGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGA----------------- 242
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VFD++ EG + YN LL +G + V E
Sbjct: 243 -------------------RKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSE 283
Query: 190 ATKRGLFPELFRHNKLVWSV 209
T+RGL P++ L+ +
Sbjct: 284 MTQRGLVPDVVTFTSLIHAT 303
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 59/108 (54%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + GV ++ +++++I + R +A + + M ++ P+E T ++ +C G
Sbjct: 423 KMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEG 482
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+++ E+ G+LP V+ Y +L+ +KS R +A+ LL +++
Sbjct: 483 NVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLY 530
>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 913
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K IL M SG A ++NA+I + + E A+ +M PNE T
Sbjct: 570 AGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHT 629
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y G + ++ E F +IK G+ V Y LL KS R A + EM
Sbjct: 630 YTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMS 689
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +I+ V +I G W+ + + ++ +G + Y + + A G
Sbjct: 690 SQKIARNTFVYNILIDGWARRGDVWEAAD-LMKQMKEDGVPPNIHTYTSYINACCKAGDM 748
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+RA V+DE + GL P L + L+
Sbjct: 749 QRAQTVIDEMSDVGLKPNLKTYTTLI 774
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M +SG+ + +N +IEAF + G + AI+ +M+K R P+ R ++ +
Sbjct: 509 IFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFA 568
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG + + + ++ SG P+VM Y L+ + N+ + A +L++M I+
Sbjct: 569 VAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEH 628
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+++G + EY F K+ G L + Y LL A G + A V E
Sbjct: 629 TYTIIMRGYAATGDIAKAFEY-FTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTRE 687
Query: 190 ATKRGLFPELFRHNKLV 206
+ + + F +N L+
Sbjct: 688 MSSQKIARNTFVYNILI 704
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 12/197 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+KE + L + N ++ +I A Q G + A + EME+ D
Sbjct: 369 LFKEAKTNLGDL-------NGIIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYH 421
Query: 63 AVLSVYCFAGLVDESK--EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ Y + DE K F+ +K PS++ Y L+ +Y K + A + EM
Sbjct: 422 SMMHGYTI--IQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGKVAKAIAISKEME 479
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ I + ++ +I G F ++ +F+++ G YN L+EA +G
Sbjct: 480 SSGIKHNNKTYSMLISG-FIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNM 538
Query: 181 ERAARVLDEATKRGLFP 197
+RA R+L++ K + P
Sbjct: 539 DRAIRILEKMQKERMQP 555
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS +ARN+ +N +I+ + + G EA +M++ PN T
Sbjct: 676 GRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTY 735
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ ++ C AG + ++ E+ G+ P++ Y L+ +A+++ D A +EM
Sbjct: 736 TSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEM 793
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M E GV N ++ + I A + G + A EM V PN +T ++
Sbjct: 715 EAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLI 774
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ A L D + + F+E+K +G+ P Y C++ ++ +++
Sbjct: 775 KGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTSLLSRAT 817
>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
Length = 702
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 12/214 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E GV + + +I+ + GR +EA++ + M + C PN T V++ C
Sbjct: 133 LLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGE-ECSPNVITYNTVVNGLC 191
Query: 70 FAGLVDESKEQFQEIK-----SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
A +DE+ E F +++ S G P V+ Y ++ K+ R D AY M
Sbjct: 192 KANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGC 251
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G + + +E + + +G+G+ + +NA+L ALW +E+A
Sbjct: 252 APNVVTYSSLIDGLCKVDRPSECLELLL-HMKEKGFGINIIDFNAMLHALWKNDEQEKAC 310
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+ + K G P N + ++V VH + + G
Sbjct: 311 QFFERLLKSGKKP-----NVVTYNVAVHGLCKAG 339
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
EC +L M E G N FNA++ A + E+A + + + K PN T +
Sbjct: 273 ECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAV 332
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C AG VDE+ E+ S + P V+ Y ++ + K+ R D A + M +
Sbjct: 333 HGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECI 392
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
H VT + F + + V + + G+ G++ YN L++ + E A
Sbjct: 393 P-HPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALE 451
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ + ++ P+ + L+
Sbjct: 452 IYHKMKRKKRQPDCNTYAPLI 472
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74
++ G N+ + ++ AF + R EEA + E + C PNE V++ +C AG V
Sbjct: 68 NKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQV 127
Query: 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
D++ E E+K G+ V+ + L+ + R D+A
Sbjct: 128 DQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEA 165
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 87/219 (39%), Gaps = 1/219 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E IL M ES V + +++++I+ F + GR ++A + M C P+ T
Sbjct: 338 AGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVT 397
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L + E+ +++ ++G +P + Y +L+ ++ + A + +M
Sbjct: 398 FMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMK 457
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +I+ + E+ D + + +AL+E L G
Sbjct: 458 RKKRQPDCNTYAPLIQCLCRARRVDEAKEF-LDVMEADNVVPNGAICHALVEVLCKQGEV 516
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
+ A VLD + G P LV + + + WE +
Sbjct: 517 DEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAAS 555
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 57/117 (48%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L K+ +A + G ++ +++ + + G+ +EA++ +M P+E T
Sbjct: 547 LRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYV 606
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
AVL C V+ + +F+++ S G P ++ Y +L+ ++ D+A+ + + M
Sbjct: 607 AVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAM 663
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 81/186 (43%), Gaps = 6/186 (3%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G ++N +++ E A++ Y +M++ + P+ T ++ C A
Sbjct: 421 MVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARR 480
Query: 74 VDESKEQFQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
VDE+KE +++ ++P+ +C+ L+ V K D+A +LD N + Q G
Sbjct: 481 VDEAKEFLDVMEADNVVPNGAICH-ALVEVLCKQGEVDEACSVLD----NVVEVGCQPLG 535
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+ K ++ + E L G+ Y+ + + G + A V+++
Sbjct: 536 ETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVL 595
Query: 193 RGLFPE 198
+G+ P+
Sbjct: 596 KGVRPD 601
>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E I++ M++ G+ + ++NA+I + GR+ A +EM + P+ T
Sbjct: 15 GLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTY 74
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L C E+KE F E+ G++P ++ + L+AV++++ D A +M
Sbjct: 75 NTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKK 134
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVE--YVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + + ++ G N M+E + D++ +G L + YN +L L +
Sbjct: 135 FGLVPDNVIYTVLMHGYC---RNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKM 191
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
A ++ DE +RG P+ + L+
Sbjct: 192 LTDADKLFDEMVERGALPDFYTFTTLI 218
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 54/120 (45%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M++ + + ++N +I+ F + G E+A + + M + PN T +++ Y
Sbjct: 232 SLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAY 291
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G V E+ + + GI P+++ ++ Y +S A L M ++ H
Sbjct: 292 CSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDH 351
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+ S M++ G+ + +F ++I A + G E+A+ +M + NE T
Sbjct: 130 GCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTF 189
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ +C G +D++ +E++ GI PSV+CY L+ Y K R D A L+ EM
Sbjct: 190 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA 249
Query: 122 NRI 124
R+
Sbjct: 250 KRV 252
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 12/203 (5%)
Query: 10 ILSRMSESGVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++S M E G A+ N +FN+++ + GR E A K + EM + P+ + +LS Y
Sbjct: 67 VVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGY 126
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNR 123
C G + ES F E+ G++P V+ + L+ K+ + A L+ +M N
Sbjct: 127 CKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNE 186
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
++ + G KG DD + V + C G + YNAL+ LG + A
Sbjct: 187 VTFTALIDGFCKKGFLDDA-----LLAVEEMRKC-GIQPSVVCYNALINGYCKLGRMDLA 240
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
++ E + + P++ ++ ++
Sbjct: 241 RELIREMEAKRVKPDVVTYSTII 263
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 37/197 (18%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M GVA N ++N ++ A GR EEA+ +M C PN T +++ +C AG
Sbjct: 1 MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60
Query: 74 VDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+D ++ ++ G P+++ + ++ K+ R + A + DEM
Sbjct: 61 LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVR----------- 109
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
EG + YN LL +G + V E T+
Sbjct: 110 -------------------------EGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQ 144
Query: 193 RGLFPELFRHNKLVWSV 209
RGL P++ L+ +
Sbjct: 145 RGLVPDVVTFTSLIHAT 161
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 59/108 (54%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + GV ++ +++++I + R +A + + M ++ P+E T ++ +C G
Sbjct: 281 KMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEG 340
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+++ E+ G+LP V+ Y +L+ +KS R +A+ LL +++
Sbjct: 341 NVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLY 388
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 36/194 (18%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE A+ S++ + G+ + FNA+I+ G + A + EM+ ++ P+E T +
Sbjct: 443 KEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTL 502
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ YC G V+E+++ E+K GI P + Y L++ Y+K DA+ + DEM T
Sbjct: 503 MQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTT-- 560
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
G+ + YNAL++ L E A
Sbjct: 561 ----------------------------------GFDPTILTYNALIQGLCKNQEGEHAE 586
Query: 185 RVLDEATKRGLFPE 198
+L E +G+ P+
Sbjct: 587 ELLKEMVSKGITPD 600
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 83/187 (44%), Gaps = 11/187 (5%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+FN +I + G+ ++A + ME + PN T ++ +C G ++ FQ +
Sbjct: 218 TFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTM 277
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIHQVTGQMIKGEF 139
K G+ P Y ++ K R ++A GL+ +M N ++ + G KG+
Sbjct: 278 KDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDL 337
Query: 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
D ++ D++ +G + YN + AL+ G A ++ E ++G+ P+
Sbjct: 338 DKAYAYR------DEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDA 391
Query: 200 FRHNKLV 206
HN L+
Sbjct: 392 VTHNILI 398
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 18/227 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + + M GV N ++N +I G+F+ A + M+ +P+ T
Sbjct: 230 GKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTY 289
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ +S C G ++E+ ++ G++P+ + Y L+ Y D AY DEM +
Sbjct: 290 NSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMIS 349
Query: 122 NRISN--------IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
I IH + ++G D N M++ + +K G +N L+
Sbjct: 350 KGIMASLVTYNLFIHAL---FMEGRMGDADN--MIKEMREK----GMMPDAVTHNILING 400
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV-DVHRMWEGGA 219
G +RA +LDE +G+ P L + L++ + +RM E A
Sbjct: 401 YCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADA 447
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + I M + G+ + ++N+ I + GR EEA +M + PN T
Sbjct: 265 GKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTY 324
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ YC G +D++ E+ S GI+ S++ Y + + R DA ++ EM
Sbjct: 325 NALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMRE 384
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ VT ++ + + + + D++ +G + Y +L ++ LG R
Sbjct: 385 KGMMP-DAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSL---IYVLGKRN 440
Query: 182 R---AARVLDEATKRGLFPELFRHNKLV 206
R A + + + GL P++ N L+
Sbjct: 441 RMKEADALFSKIQQEGLLPDIIVFNALI 468
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + ++N I A GR +A EM + P+ T +++ YC G
Sbjct: 347 MISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGD 406
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E+ GI P+++ Y L+ V K NR +A L ++ + V
Sbjct: 407 AKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNA 466
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G + N + +++ YN L++ G E A ++LDE +R
Sbjct: 467 LIDGHCAN-GNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRR 525
Query: 194 GLFPELFRHNKLV 206
G+ P+ +N L+
Sbjct: 526 GIKPDHISYNTLI 538
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + +L M G+ + S+N +I + + G ++A + EM DP T
Sbjct: 510 GKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTY 569
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG 114
A++ C + ++E +E+ S GI P Y L++ DD G
Sbjct: 570 NALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTY---LSIIEAMETVDDLEG 619
>gi|356532363|ref|XP_003534743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 693
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 38/273 (13%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERT 60
G+YKE M +G+ +D +N ++ G + A + + EM+ C P+ T
Sbjct: 353 GVYKE-------MKGNGMDITADLYNKLLAMCADVGYTDRASEIFYEMKSSGTCQPDSWT 405
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+++++Y +G V E++ E+ SG P++ L+ Y K+ R DD + ++
Sbjct: 406 FSSMITMYSRSGKVSEAEGMLNEMIQSGFQPTIFVMTSLICCYGKAKRTDDVVKIFKQLL 465
Query: 120 HTNRISNIH------QVTGQMIKGEFD------DESNWQM---VEYVFDKL--------- 155
+ N H V Q K E +++N ++ V Y+ ++L
Sbjct: 466 DLGIVPNDHFCCSLLNVLTQTPKEELGKLTDCIEKANTKLGTVVRYLMEELEGDEAFRKE 525
Query: 156 -----NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVD 210
N + N L++ L + ERA +LD ++ + ++ WS+
Sbjct: 526 ALELLNSIDAEVKKPLCNCLIDLCVKLNVPERARDLLDLGLMLEIYTNIQFKSQTQWSLH 585
Query: 211 VHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQL 243
+ + G A TA+ VW+N++ + GEDLP L
Sbjct: 586 LKELSVGAAMTALHVWINELSKALESGEDLPPL 618
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ +AI M +G + N + A+++A+ + E+A+ Y EM+ D +L
Sbjct: 315 DAKAIYEEMISNGFSPNWPTHAALLQAYCKARFPEDALGVYKEMKGNGMDITADLYNKLL 374
Query: 66 SVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ G D + E F E+KSSG P + ++ +Y++S + +A G+L+EM
Sbjct: 375 AMCADVGYTDRASEIFYEMKSSGTCQPDSWTFSSMITMYSRSGKVSEAEGMLNEM 429
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
++ +F+A+I+ F+ + Y +M+ + PN T A+L A ++K +
Sbjct: 261 DTAAFSALIKMCGMLENFDGCLSVYNDMKVLGAKPNMVTYNALLYAMGRAKRALDAKAIY 320
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+E+ S+G P+ + LL Y K+ +DA G+ EM N
Sbjct: 321 EEMISNGFSPNWPTHAALLQAYCKARFPEDALGVYKEMKGN 361
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 77/188 (40%), Gaps = 13/188 (6%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY--VEMEKVRCDPNERTLEAVLSVYCF 70
+M GV ++ + +I A+ G + A+K Y + EK R D A++ +
Sbjct: 217 KMPSFGVEPDASVASFMIHAYAHSGNADMALKLYGRAKAEKWRVD--TAAFSALIKMCGM 274
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
D + ++K G P+++ Y LL ++ R DA + +EM +N S
Sbjct: 275 LENFDGCLSVYNDMKVLGAKPNMVTYNALLYAMGRAKRALDAKAIYEEMISNGFSPNWPT 334
Query: 131 TGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
++ K F +++ V+ ++ G + YN LL +G +RA+ +
Sbjct: 335 HAALLQAYCKARFPEDALG-----VYKEMKGNGMDITADLYNKLLAMCADVGYTDRASEI 389
Query: 187 LDEATKRG 194
E G
Sbjct: 390 FYEMKSSG 397
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ +M E V ++ +FN +++ + G EA + M + +PN T
Sbjct: 166 GRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTY 225
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ YC +DE+++ F + G PSV Y +L+ + KS R D+A GLL EM
Sbjct: 226 NALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSH 285
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ ++KG F + Q + + +++ G + Y+ +L+ L G +
Sbjct: 286 KALTPDTVTYSTLMKG-FCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLD 344
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +L + + P +F + L+
Sbjct: 345 EAFELLKAMQESKIEPNIFIYTILI 369
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 84/197 (42%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + G + +++ +I + G AI+ +ME+ C PN ++ C
Sbjct: 69 LFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLC 128
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
L+ E+ E E+ + GI P+V+ Y +L + R ++A L +M R
Sbjct: 129 KDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQM-VERNVMPDT 187
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT ++ E + VF+ + +G + YNAL++ + A ++ +
Sbjct: 188 VTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNI 247
Query: 190 ATKRGLFPELFRHNKLV 206
++G P + +N L+
Sbjct: 248 MVRKGCAPSVRSYNILI 264
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 9/205 (4%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L E LS M G++ N ++++++ F GR EA + +M + P+ T
Sbjct: 132 LITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFN 191
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ G++ E++ F+ + G+ P+V Y L+ Y ++ D+A L + M
Sbjct: 192 ILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRK 251
Query: 123 RISNIHQVTGQMIKGEFD----DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ + +IKG DE+ + E L + Y+ L++ G
Sbjct: 252 GCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVT-----YSTLMKGFCQDG 306
Query: 179 LRERAARVLDEATKRGLFPELFRHN 203
+ A ++L+E GL P+L ++
Sbjct: 307 RPQDAQKLLEEMRSYGLLPDLMTYS 331
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ Q +L M G+ + +++ V++ + G +EA + M++ + +PN
Sbjct: 306 GRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIY 365
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ C G ++ ++E F + GI P V+ Y ++++ K ++A L +M
Sbjct: 366 TILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDM 423
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M ES + N + +I+ G+ E A + + + P+ T
Sbjct: 341 GHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTY 400
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++S GL +E+ E F+++ G LP+ Y +++ + ++ +A L++EM
Sbjct: 401 TVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEM 458
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 1/169 (0%)
Query: 38 RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC 97
F A M K+ PN T +L+ + ++ + F E+ G P V+ Y
Sbjct: 27 HFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYS 86
Query: 98 MLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC 157
++ K A LL +M V +I D+ + +E++ + +N
Sbjct: 87 TIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVN- 145
Query: 158 EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + Y+++L LG A + + +R + P+ N LV
Sbjct: 146 RGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILV 194
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+ S M++ G+ + +F ++I A + G E+A+ +M + NE T
Sbjct: 272 GCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTF 331
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ +C G +D++ +E++ GI PSV+CY L+ Y K R D A L+ EM
Sbjct: 332 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA 391
Query: 122 NRI 124
R+
Sbjct: 392 KRV 394
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 12/203 (5%)
Query: 10 ILSRMSESGVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++S M E G A+ N +FN+++ + GR E A K + EM + P+ + +LS Y
Sbjct: 209 VVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGY 268
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNR 123
C G + ES F E+ G++P V+ + L+ K+ + A L+ +M N
Sbjct: 269 CKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNE 328
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
++ + G KG DD + V + C G + YNAL+ LG + A
Sbjct: 329 VTFTALIDGFCKKGFLDDA-----LLAVEEMRKC-GIQPSVVCYNALINGYCKLGRMDLA 382
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
++ E + + P++ ++ ++
Sbjct: 383 RELIREMEAKRVKPDVVTYSTII 405
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 37/200 (18%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
LS M GVA N ++N ++ A GR EEA+ +M C PN T +++ +C
Sbjct: 140 LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCR 199
Query: 71 AGLVDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +D ++ ++ G P+++ + ++ K+ R + A
Sbjct: 200 AGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGA----------------- 242
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VFD++ EG + YN LL +G + V E
Sbjct: 243 -------------------RKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSE 283
Query: 190 ATKRGLFPELFRHNKLVWSV 209
T+RGL P++ L+ +
Sbjct: 284 MTQRGLVPDVVTFTSLIHAT 303
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 59/108 (54%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + GV ++ +++++I + R +A + + M ++ P+E T ++ +C G
Sbjct: 423 KMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEG 482
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+++ E+ G+LP V+ Y +L+ +KS R +A+ LL +++
Sbjct: 483 NVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLY 530
>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 1/206 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ + SRM + G +S NA + + R + A+ Y EM + R PN T
Sbjct: 145 FRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNL 204
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
VLS C +G ++++ E +E++S GI P+V+ Y L+A + A L + M N
Sbjct: 205 VLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNG 264
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +I G F E F ++ YN L+ +G A
Sbjct: 265 LEPNVVTFNSLIHG-FCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMA 323
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSV 209
+V +E + G+ ++ +N L+ +
Sbjct: 324 GKVYEEMMRNGVKADILTYNALILGL 349
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 1/188 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M G+ N S+N +I G A K M K +PN T +++ +C
Sbjct: 221 VLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFC 280
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + E+ F E+K + P+ + Y L+ Y + + A + +EM N +
Sbjct: 281 KEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADIL 340
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G E + ++ +L+ E Y+AL+ +RA ++
Sbjct: 341 TYNALILG-LCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKS 399
Query: 190 ATKRGLFP 197
+ G P
Sbjct: 400 MVRSGCHP 407
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 63/137 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + + M ++G+ N +FN++I F + G+ EA + + EM+ + PN T
Sbjct: 248 GLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTY 307
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ Y G + + + ++E+ +G+ ++ Y L+ K + A L+ E+
Sbjct: 308 NTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDK 367
Query: 122 NRISNIHQVTGQMIKGE 138
+ +I G+
Sbjct: 368 ENLVPNASTYSALISGQ 384
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +GV + ++NA+I + G+ ++A E++K PN T A++S C
Sbjct: 330 MMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKN 389
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
D + + ++ + SG P+ + ML + + K+ ++ A+ +L +M
Sbjct: 390 SDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLMDM 435
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 1/153 (0%)
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
CD + R +++ Y + + F +K G LP+V L+ +R D A
Sbjct: 125 CDSSPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIAL 184
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
EM RIS + T ++ + V ++ G + YN L+
Sbjct: 185 TFYREMRRCRISP-NSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAG 243
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
GL A ++ + K GL P + N L+
Sbjct: 244 HCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLI 276
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + GV ++ +FN++++ + G+FE A M + C P+ T ++S C
Sbjct: 283 MLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLC 342
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
VD +K+ E SSG +P V+ Y +L K R D+A+ L+ EM + + +
Sbjct: 343 KQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEM-SGKGCTPNL 401
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT + S + + + L G+ + Y +++ L G ++A ++++
Sbjct: 402 VTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEG 461
Query: 190 ATKRGLFPELFRHNKLV 206
KRG P + + L+
Sbjct: 462 MLKRGCTPSVITYTALM 478
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 8/199 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + SG + ++ +++ + GR ++A+K M K C P+ T A++ C
Sbjct: 423 LLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLC 482
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VDE+ F+E+ S + Y L+ Y KS+R +A ++D + +++
Sbjct: 483 RTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYN 542
Query: 130 --VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ G +G D+ N VF+ + C G ++ YN +++ L G + A L
Sbjct: 543 ALMDGYCKEGRLDEIPN------VFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFL 596
Query: 188 DEATKRGLFPELFRHNKLV 206
+ G P++ +N ++
Sbjct: 597 ESMHSAGCVPDVVSYNIII 615
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 5/229 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M+ G N ++N V++ + G+ +EA M C P+ +
Sbjct: 552 GRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSY 611
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ A E+++ ++ +GI P + Y L+A + K R+DDA G+L M
Sbjct: 612 NIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIK 671
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + +I G E + + L YN +++ L G +
Sbjct: 672 AGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLK 731
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+A ++D T G+ N + +++ + R+ + G S L++M
Sbjct: 732 QALLLMDHMTGHGV-----EANTVTYNIFIDRLCKEGRLDEASSLLSEM 775
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G+ S +FN +I+AF + R +EA+ M + C P+ T V++ C VD++
Sbjct: 812 GLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKA 871
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
E F E+ GI+ S + Y +L+ R +A +L+EM ++
Sbjct: 872 WELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASS 916
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 4/202 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ MS G N ++N +I+ + + E+A + + P+ T
Sbjct: 380 GRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTY 439
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G +D++ + + + G PSV+ Y L+ ++ R D+A+ + EM +
Sbjct: 440 TIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVS 499
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ ++ G + S + + V D + Y + YNAL++ G +
Sbjct: 500 KDCTADALAYVSLVNG-YCKSSRTKEAQKVVDGIRGTPY---IDVYNALMDGYCKEGRLD 555
Query: 182 RAARVLDEATKRGLFPELFRHN 203
V ++ RG P + +N
Sbjct: 556 EIPNVFEDMACRGCVPNIKTYN 577
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 13/193 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ ++ M+ GV N+ ++N I+ + GR +EA EM+ +R +E +
Sbjct: 728 GCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR---DEVSY 784
Query: 62 EAVLSVYCFAGLVDESKEQFQE-IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ C A +D + + +E + G+ + + +L+ + K+ R D+A LL M
Sbjct: 785 TTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLM- 843
Query: 121 TNRISNIHQVTGQMIKG---EFDD-ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
R + +T M+ + D + W++ FD++ G Y L+ L
Sbjct: 844 VQRGCSPSVITYNMVITCLCKLDKVDKAWEL----FDEMAVRGIVASSVSYTVLIYGLCG 899
Query: 177 LGLRERAARVLDE 189
G + A +VL+E
Sbjct: 900 QGRGKEALQVLEE 912
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 42/199 (21%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS-V 67
A+ RM ++G A +S +++ VI++ Q + ++A ++ KVR E ++ +L+
Sbjct: 146 AMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAF-TMLDKAKVRGFKPEVSVYTILTRA 204
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+C G + ++ E F+ I S P + Y ++ + + N D A L EM+ +++
Sbjct: 205 FCKTGRLKDALEIFRNIPS----PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVA-- 258
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
VF YN L++ L ++A+ +L
Sbjct: 259 ---------------------PDVFT-------------YNILIDGLCKASKTDKASEML 284
Query: 188 DEATKRGLFPELFRHNKLV 206
E RG+ P+ N ++
Sbjct: 285 HEMVDRGVTPDTVTFNSIM 303
>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 506
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 7/199 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++E I ++ E G+ +N++S N +++ + R E+A +E+ K PN T
Sbjct: 166 AGEWEEAVGIFDKLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLEL-KSHITPNAHT 224
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +C A V+E+ QE+K G P V+ Y ++ Y + + + Y +L EM
Sbjct: 225 FNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQSEFVKVYEMLSEME 284
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N S + +T I + + ++ V ++ G FYN L+ L G
Sbjct: 285 ANG-SPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCQPDSLFYNCLIHTLARSGRL 343
Query: 181 ERAARVLDEATKRGLFPEL 199
E A RV R PEL
Sbjct: 344 EEAERVF-----RVEMPEL 357
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M +G NS ++ ++ + FEEA++ M++ C P+ ++
Sbjct: 279 MLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCQPDSLFYNCLIHTLA 338
Query: 70 FAGLVDESKEQFQ-EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+G ++E++ F+ E+ G+ + Y ++A+Y + D A LL EM ++ + N
Sbjct: 339 RSGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCN 396
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-VEMEKVRCDPNERTLE 62
++E + +RM SG +S +N +I + GR EEA + + VEM ++ N T
Sbjct: 308 FEEALRVATRMKRSGCQPDSLFYNCLIHTLARSGRLEEAERVFRVEMPELGVSINTSTYN 367
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++++YC D++ E +E++SS + P V Y LL K + LL EM T
Sbjct: 368 SMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVT 427
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 9/211 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++GV N ++N+++ + + +EAI +M +P+ T +++ C
Sbjct: 253 VLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLC 312
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + YC LL YA + + LLD M N I H
Sbjct: 313 KNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHH 372
Query: 130 VTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V +I K E DE+ VF K+ G + Y A++ L G + A
Sbjct: 373 VFNILICAYAKQEKVDEAML-----VFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAML 427
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
++ GL P + + L+ S+ + W+
Sbjct: 428 YFEQMIDEGLTPNIIVYTSLIHSLCIFDKWD 458
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 98/215 (45%), Gaps = 21/215 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L M +G+ + FN +I A+ + + +EA+ + +M + +PN T
Sbjct: 350 GALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTY 409
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
AV+ + C +G VD++ F+++ G+ P+++ Y L+ ++WD A L+ EM
Sbjct: 410 GAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLD 469
Query: 120 --------HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
N I + H G++I+ E +FD + G + Y+ L+
Sbjct: 470 RGICLNTIFFNSIIHSHCKEGRVIES-----------EKLFDLMVRIGVKPNVITYSTLI 518
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ G + A ++L G+ P+ +N L+
Sbjct: 519 DGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLI 553
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 1/182 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + ++ M + G+ N+ FN++I + + GR E+ K + M ++ PN T ++
Sbjct: 459 KAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLI 518
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
YC AG +DE+ + + S G+ P + Y L+ Y + +R DDA L EM ++ +S
Sbjct: 519 DGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVS 578
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+++G F E ++ + G L + YN +L L L + A R
Sbjct: 579 PNIITYNIILQGLFHTRRTAAAKE-LYVGITKSGTQLELSTYNIILHGLCKNNLTDEALR 637
Query: 186 VL 187
+
Sbjct: 638 MF 639
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 1/191 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G A + S+ VI F + G ++A Y EM R P+ T ++++ C +D++
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
E + +G++P+ M Y +L Y S + +A G L +M ++ + VT +
Sbjct: 251 MEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEP-DVVTYNSLMD 309
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+FD + G + Y LL+ G +LD + G+ P
Sbjct: 310 YLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHP 369
Query: 198 ELFRHNKLVWS 208
+ N L+ +
Sbjct: 370 DHHVFNILICA 380
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 8/156 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +LS M G+ + ++N +I + + R ++A+ + EM PN T
Sbjct: 524 AGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT 583
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA------YG 114
+L +KE + I SG + Y ++L K+N D+A
Sbjct: 584 YNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 643
Query: 115 LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150
L D R NI + G ++K +DE+ V +
Sbjct: 644 LTDLQLETRTFNI--MIGALLKVGRNDEAKDLFVAF 677
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 46/114 (40%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ M SGV+ N ++N +++ R A + YV + K T +L
Sbjct: 567 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
C L DE+ FQ + + + + +++ K R D+A L +N
Sbjct: 627 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSN 680
>gi|356532365|ref|XP_003534744.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 705
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 112/251 (44%), Gaps = 16/251 (6%)
Query: 2 GLYKECQAILSRMSESGVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E I M SG + +S +F+++I + G+ EA EM + P
Sbjct: 388 GCIEEAVEIFEDMKSSGTCQPDSLTFSSLITVYSCNGKVSEAEGMLNEMIQSGFQPTIYV 447
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD--- 117
L +++ Y A D+ + F+++ GI+P V C LL V ++ + + +G L
Sbjct: 448 LTSLVQCYGRAKQTDDVVKIFKQLLDLGIVPDVYFCCCLLNVMTQTPK--EEFGKLTDCI 505
Query: 118 EMHTNRISNI--HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
E R+ ++ + V GQ G+F E++ + LN + + N L++
Sbjct: 506 EKANTRLGSVVRYLVEGQEGDGDFRKEAS--------ELLNSIDFKVKKPLCNCLIDLCV 557
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFM 235
L RA VLD ++ + ++ WS+ + ++ G A TA+ VW+N + +
Sbjct: 558 SLNAPNRARDVLDLGLMLEIYKNIQSRSETQWSLHLKKLSVGAAITALHVWINDLSKALE 617
Query: 236 MGEDLPQLATV 246
EDLP L V
Sbjct: 618 SWEDLPPLLGV 628
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 9/203 (4%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+NA ++AFR+ FE A K + EM + P+ T +++ L D++ E F+++
Sbjct: 167 YNATLKAFRKSRDFEGAEKLFDEMLQRGVKPDNITFSTLINSARMCALPDKAVEWFKKMP 226
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
S G P M +++ YA++N D A L + S +IK + N+
Sbjct: 227 SFGCEPDAMTCSAMVSAYAQTNNVDMALSLYGRAKAEKWSLDASTFSTLIK-MYGVLGNY 285
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+F ++ G + YN LL +L+ +A V E G+ P+ + L
Sbjct: 286 VECLRIFGEMKVLGVKPTVVTYNTLLGSLFRSKKSWQAKNVYKEMISNGVSPDFITYATL 345
Query: 206 VWSVDVHRMWEGGAY--TAISVW 226
+ R++ G Y A+SV+
Sbjct: 346 L------RIYAGAQYREDALSVY 362
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + + M +GV+ + ++ ++ + E+A+ Y EM+ D +L
Sbjct: 322 QAKNVYKEMISNGVSPDFITYATLLRIYAGAQYREDALSVYKEMKGNGMDMTVDLYNRLL 381
Query: 66 SVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ G ++E+ E F+++KSSG P + + L+ VY+ + + +A G+L+EM
Sbjct: 382 DMCADVGCIEEAVEIFEDMKSSGTCQPDSLTFSSLITVYSCNGKVSEAEGMLNEM 436
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/226 (18%), Positives = 87/226 (38%), Gaps = 36/226 (15%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ + + M + GV ++ +F+ +I + R ++A++ + +M C+P+ T A
Sbjct: 180 FEGAEKLFDEMLQRGVKPDNITFSTLINSARMCALPDKAVEWFKKMPSFGCEPDAMTCSA 239
Query: 64 VLSVYCFAGLVD-----------------------------------ESKEQFQEIKSSG 88
++S Y VD E F E+K G
Sbjct: 240 MVSAYAQTNNVDMALSLYGRAKAEKWSLDASTFSTLIKMYGVLGNYVECLRIFGEMKVLG 299
Query: 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMV 148
+ P+V+ Y LL +S + A + EM +N +S +++ + +
Sbjct: 300 VKPTVVTYNTLLGSLFRSKKSWQAKNVYKEMISNGVSPDFITYATLLRIYAGAQYREDAL 359
Query: 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
V+ ++ G + + YN LL+ +G E A + ++ G
Sbjct: 360 S-VYKEMKGNGMDMTVDLYNRLLDMCADVGCIEEAVEIFEDMKSSG 404
>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 500
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
ILS M G++ + +F+A+I+ + + G+ EA K Y EM + +PN T ++++ C
Sbjct: 241 ILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLC 300
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL+DE+K+ + S G P+ + Y L+ Y K+ R DD +L M + +
Sbjct: 301 IHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTF 360
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ +G + + E V ++ G M +N LL+ L G +A L++
Sbjct: 361 TYNTLYQG-YCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLED 419
Query: 190 ATKRGLFPELFRHNKLV 206
K + +N ++
Sbjct: 420 LQKSKTVVGIITYNIII 436
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L +M + G + +F +++ F RF EA+ ++ + +PN ++ C
Sbjct: 137 LGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCE 196
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G V+ + + + +K GI P V+ Y L+ S W + +L +M IS +
Sbjct: 197 KGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISP-DVI 255
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
T + + E + ++++ + YN+L+ L GL + A +VL+
Sbjct: 256 TFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVL 315
Query: 191 TKRGLFPELFRHNKLV 206
+G FP +N L+
Sbjct: 316 VSKGFFPNAVTYNTLI 331
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 85/202 (42%), Gaps = 11/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + G+ + ++N++I G + + + +M ++ P+ T A++ VY
Sbjct: 206 VLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYG 265
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRI 124
G + E+K+Q+ E+ + P+++ Y L+ D+A +L+ + + N +
Sbjct: 266 KEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAV 325
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + G DD V ++ +G YN L + G A
Sbjct: 326 TYNTLINGYCKAKRVDDGMKILCV------MSRDGVDGDTFTYNTLYQGYCQAGKFSAAE 379
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+VL G+ P+++ N L+
Sbjct: 380 KVLGRMVSCGVHPDMYTFNILL 401
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 53/120 (44%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + +L RM GV + +FN +++ G+ +A+ +++K + T
Sbjct: 372 AGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIIT 431
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C A V+++ F + G+ P V+ Y ++ + W +A+ L +M
Sbjct: 432 YNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQ 491
>gi|242074484|ref|XP_002447178.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
gi|241938361|gb|EES11506.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
Length = 643
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 1/197 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE A+ RM SG+ ++ ++ ++ + G EEA+ + + N
Sbjct: 365 GREKEAMALFERMKASGIELDAVTYGVIVNCLCRFGNMEEALSCFRSCVEKGVAVNAIFY 424
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ + G+VD++KE F+E+ + G +P CY +L+ K+ R D A + M
Sbjct: 425 TSLIDGFGKTGMVDQAKELFEEMIAKGFVPDSYCYNVLIDALVKAGRTDIACAFYERMED 484
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G F + N + +++ +D + +G + L L G
Sbjct: 485 DGCDQTVYTYTILIDGLFKEHKNEEALKF-WDSMIDKGITPTAAAFRVLANGLCLSGKFS 543
Query: 182 RAARVLDEATKRGLFPE 198
RA R+LDE G+ PE
Sbjct: 544 RAWRILDELAPMGVIPE 560
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 73/182 (40%), Gaps = 4/182 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNERTLEAVLSVYCFAG 72
M +GV + ++N +++ G + AI + M + R P+ + ++ YC AG
Sbjct: 198 MRLAGVEPSRLTYNCLLDGLVNAGLLDTAINVFDAMSTEDRVRPDVVSYNILIKGYCRAG 257
Query: 73 LVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN-IHQV 130
+ + +++ L P + Y L+ + + L EM + I Q
Sbjct: 258 RTQDGMSRLADLREQAELAPDKVTYLTLMQRHYSEGTFPQCIALFQEMEERGMGKEIPQH 317
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
++ G + VF+++ G Y AL++++ LG RE+ A L E
Sbjct: 318 AYVLVIGALSKDGKPFEALAVFERMLKRGCPANAAMYTALIDSMGKLG-REKEAMALFER 376
Query: 191 TK 192
K
Sbjct: 377 MK 378
>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial [Vitis vinifera]
Length = 817
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 11/207 (5%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + + M G+A + + A+I A+ + G +A+ + +M N + ++
Sbjct: 314 KEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSI 373
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L C G+ E +QF+E + SGI + Y +++ K + ++A LL+EM R+
Sbjct: 374 LQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRM 433
Query: 125 S--NIHQVT---GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
S +H T G ++G+ D N +F+++ G + YN L+ GL
Sbjct: 434 SLDVVHYTTLIAGYCLQGKLVDAKN------MFEEMKERGIEPDIVTYNILVGGFSRNGL 487
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
++ A +LD +GL P HN+++
Sbjct: 488 KKEALELLDCIGTQGLKPNSATHNRII 514
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 5/202 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL KE +L + G+ NS + N +IE G+ +EA +A++ + +C N
Sbjct: 486 GLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEA-EAFLNTLEDKCLEN---Y 541
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ YC A ++ E F + GIL LL+ +D A LL+ M
Sbjct: 542 SAMVDGYCKANFTRKAYELFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLA 601
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + G++I G F + + + + VFD L G + Y ++ +
Sbjct: 602 LDVEPNQIMYGKLI-GAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLR 660
Query: 182 RAARVLDEATKRGLFPELFRHN 203
A + ++ +RG+ P++ +
Sbjct: 661 EARDIFNDMKERGIKPDVITYT 682
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 68/136 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E +SG+ + +N V++A + G+ EEA++ EM+ R +
Sbjct: 381 GMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHY 440
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC G + ++K F+E+K GI P ++ Y +L+ ++++ +A LLD + T
Sbjct: 441 TTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGT 500
Query: 122 NRISNIHQVTGQMIKG 137
+ ++I+G
Sbjct: 501 QGLKPNSATHNRIIEG 516
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 16/212 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y + +L RM V N + +I AF + G + A + + + P+ T
Sbjct: 587 GEYDKALILLERMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITY 646
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN-------------- 107
+++ YC + E+++ F ++K GI P V+ Y ++L ++K N
Sbjct: 647 TMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKVNLKMARSLQFSKGSE 706
Query: 108 -RWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF 166
DA EM I V ++ +N Q ++D++ G +
Sbjct: 707 EEKMDASPFWSEMKEMGIKP-DVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVT 765
Query: 167 YNALLEALWCLGLRERAARVLDEATKRGLFPE 198
Y ALL + G +RA +++E + +G+ P+
Sbjct: 766 YTALLSSCCSRGDMDRAITLVNEMSFKGIEPD 797
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 1/172 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G++ E L + G + S N ++ + G+ + A+ Y ++++ +PN+ T
Sbjct: 171 GMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTY 230
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ C G +E+ + F+E++ +G+ P+ + + R D Y L +
Sbjct: 231 GIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRA 290
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
+I+G F E + E VF + EG Y AL+ A
Sbjct: 291 ANWPIDTFAYTAVIRG-FCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHA 341
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 98/215 (45%), Gaps = 2/215 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + + ++GV + +N++I F + G E+A + Y EM +PN
Sbjct: 640 GKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVY 699
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G V +++E F EI+ ++P V+ Y ++ Y KS +A+ L DEM +
Sbjct: 700 NTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMIS 759
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
IS + +I G E N + +F + + G + +N+L+++ G
Sbjct: 760 KGISPDGYIYCILIDG-CGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVI 817
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A + D+ + L P + + L+ + M E
Sbjct: 818 EARELFDDMVDKKLTPNIVTYTILIDAYGKAEMME 852
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 1/202 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + I M SG+ N ++ A+I+ F + G EEA++ EM N T A+
Sbjct: 328 KEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAM 387
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ AG + ++ F E+ +G+ P Y +L+ Y KS+ A LL EM ++
Sbjct: 388 IGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKL 447
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G S+ Q V D++ G + Y L++A E A
Sbjct: 448 TPSPFTYSVLISG-LCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAI 506
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+L G+ P+LF +N L+
Sbjct: 507 ELLKIMIANGVLPDLFCYNCLI 528
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 95/203 (46%), Gaps = 3/203 (1%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + +L M E G+ N+ ++ A I + + G + A + + +M PN +
Sbjct: 538 EEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTIL 597
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL-LDEMHTNR 123
+ +C G E+ F+ + G++P + Y ++ +K+ + +A G+ L + T
Sbjct: 598 IKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGV 657
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ ++ + +I G F E + + ++D++ G + YN L+ L LG +A
Sbjct: 658 VPDVF-LYNSLISG-FCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKA 715
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+ DE ++ L P++ ++ ++
Sbjct: 716 RELFDEIEEKDLVPDVVTYSTII 738
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 3/204 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y+ +L M +GV + +N +I + + EEA V+M + PN T A
Sbjct: 502 YEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGA 561
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTN 122
+++Y +G + ++ F+++ SSGI+P+ + Y +L+ + +A M
Sbjct: 562 FINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKG 621
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
I +I + I + VF K G + YN+L+ G E+
Sbjct: 622 LIPDIRAYSA--IIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEK 679
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A+++ DE G+ P + +N L+
Sbjct: 680 ASQLYDEMLHNGINPNIVVYNTLI 703
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 1/196 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E I M G+ N ++NA+I + G +A+ + EM +P+ T
Sbjct: 360 GNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTY 419
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y + + ++ E E+K+ + PS Y +L++ S+ A +LD+M
Sbjct: 420 NLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIR 479
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N + + G +IK + ES ++M + + G + YN L+ L E
Sbjct: 480 NGVKPNVFMYGTLIKA-YVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVE 538
Query: 182 RAARVLDEATKRGLFP 197
A +L + ++G+ P
Sbjct: 539 EAKMLLVDMGEKGIKP 554
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 2/199 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ +LS M E N ++NA I Q G +EA++ M + P+ T ++
Sbjct: 262 KMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDG 320
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+C E+K F+ + SSG+ P+ Y L+ + K ++A + DEM T R +
Sbjct: 321 FCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMIT-RGLKL 379
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ VT + G +F+++ G YN L++ +A +L
Sbjct: 380 NVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELL 439
Query: 188 DEATKRGLFPELFRHNKLV 206
E R L P F ++ L+
Sbjct: 440 AEMKARKLTPSPFTYSVLI 458
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+FN++I++F + G+ EA + + +M + PN T ++ Y A +++E+++ F ++
Sbjct: 802 AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDM 861
Query: 85 KSSGILPSVMCYCMLLAVYAK-SNRW 109
++ I+P+ + Y LL Y + NR+
Sbjct: 862 ETRNIIPNTLTYTSLLLSYNQIGNRF 887
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M E G+ + ++ +++ F + R +EA + M +PN T
Sbjct: 290 GAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTY 349
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ + G ++E+ E+ + G+ +V+ Y ++ AK+ A L +EM
Sbjct: 350 TALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLM 409
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G + E + ++ Y+ L+ L +
Sbjct: 410 AGLEPDTWTYNLLIDGYLKSHDMAKACE-LLAEMKARKLTPSPFTYSVLISGLCHSSDLQ 468
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A VLD+ + G+ P +F + L+
Sbjct: 469 KANEVLDQMIRNGVKPNVFMYGTLI 493
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 37/196 (18%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E+ + + ++ VI+A + G + EMEK C PN T A + C G
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK-ECKPNLFTYNAFIGGLCQTGA 291
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
VDE+ E + + G+ P Y +L+ + K R +A
Sbjct: 292 VDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEA--------------------- 330
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ +F+ + G Y AL++ G E A R+ DE R
Sbjct: 331 ---------------KLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITR 375
Query: 194 GLFPELFRHNKLVWSV 209
GL + +N ++ +
Sbjct: 376 GLKLNVVTYNAMIGGI 391
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 81/192 (42%), Gaps = 1/192 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + M + + N ++ +I+A+ + EEA + +++ME PN T ++L
Sbjct: 818 EARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLL 877
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
Y G + F+++++ GI + Y ++ + Y K + +A LL++ I
Sbjct: 878 LSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIK 937
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V +I E V + ++ E L + N LL + G + A++
Sbjct: 938 LEDDVFDALI-FHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASK 996
Query: 186 VLDEATKRGLFP 197
VL + G P
Sbjct: 997 VLGVMQRLGWVP 1008
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E L+ M G N + N ++ + GR+ +A K +M + C P+ T
Sbjct: 131 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 190
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C GL+ + + +++ G P+ + Y LL + K + D A LD M
Sbjct: 191 NILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM-V 249
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+R VT + + + + ++L+ +G + YN +++ L +G E
Sbjct: 250 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTE 309
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA ++LDE ++GL P++ ++ LV
Sbjct: 310 RAIKLLDEMRRKGLKPDIITYSSLV 334
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL+++S G + ++N VI+ + G+ E AIK EM + P+ T +++S
Sbjct: 279 ILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLS 338
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VDE+ + F +++ GI P+ + Y ++ KS + D A L M + R
Sbjct: 339 REGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEA 398
Query: 130 VTGQMIKG 137
+I+G
Sbjct: 399 TYTILIEG 406
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 10/162 (6%)
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQ---------FQEIKSSGILPSVMCYCMLLAVYA 104
C N++TL S+ F+ V + ++ E+++ G P V+ Y +L+
Sbjct: 69 CCINQQTLFPCFSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGIC 128
Query: 105 KSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGM 164
K R D+A L+ M + + +T +I W E + + +G +
Sbjct: 129 KEGRLDEAIKFLNNMPSYGCQP-NVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSV 187
Query: 165 RFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+N L+ L GL RA +L++ G P +N L+
Sbjct: 188 VTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLL 229
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 52/110 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M G+ + ++++++ + G+ +EAIK + ++E + PN T +++ C
Sbjct: 314 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 373
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ D + + + S P+ Y +L+ A +A LL+E+
Sbjct: 374 KSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 423
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 3/205 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L E + + M G A S+N +I F + R +EA EM +P+ T
Sbjct: 348 LMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYS 407
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ C G E+ F+E+ S G+LP+++ Y +LL + K D+A LL M
Sbjct: 408 TLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEK 467
Query: 123 RI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ NI T +I+G F ++ + +F KL +G +R Y +++ L GL +
Sbjct: 468 KLEPNIVHHT-ILIEGMF-IAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSD 525
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + + G P +N ++
Sbjct: 526 EAYDLFRKMEDDGFLPNSCSYNVMI 550
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + + M G N S+N +I + G A+ + +ME+ C P+ T
Sbjct: 172 GKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTY 231
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C LV+++ E E+ GI P+V Y ++ + + ++A L EM
Sbjct: 232 NTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEM-V 290
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG-LR 180
R VT ++ E VF+ + +G + YNAL++ +CL L
Sbjct: 291 GRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDG-YCLQRLM 349
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A +V + ++G P + +N L+
Sbjct: 350 NEAKKVFEIMIRQGCAPGVHSYNILI 375
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M V ++ + +++ + G EA + M + +PN T
Sbjct: 277 GQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTY 336
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ YC L++E+K+ F+ + G P V Y +L+ + KS R D+A LL EM+
Sbjct: 337 NALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMY- 395
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ N VT + + +F ++ G + Y+ LL+ G +
Sbjct: 396 HKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLD 455
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++L ++ L P + H L+
Sbjct: 456 EALKLLKSMQEKKLEPNIVHHTILI 480
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 77/195 (39%), Gaps = 1/195 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y ++ ++M GV N S N +I + + A+ +M K+ P T A
Sbjct: 104 YSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNA 163
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ C G + E+ E F E+ G P+V+ Y ++ K+ A + +M N
Sbjct: 164 LINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNG 223
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+I D +E++ + L+ G + YN ++ LG A
Sbjct: 224 CKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLD-RGIPPNVFTYNCMVHGFCILGQLNEA 282
Query: 184 ARVLDEATKRGLFPE 198
R+ E R + P+
Sbjct: 283 TRLFKEMVGRDVMPD 297
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M E + N +IE G+ E A + + ++ P RT
Sbjct: 452 GHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTY 511
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ GL DE+ + F++++ G LP+ Y +++ + ++ A L+DEM
Sbjct: 512 TVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVG 571
Query: 122 NRIS 125
R S
Sbjct: 572 KRFS 575
>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
Length = 595
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 4/203 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G L++ + ++S M E G+ N+ +NA ++ + E+A++ Y M++ RC N T
Sbjct: 224 GSLHR-AEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTET 282
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+++VY A S + F E+KS G P++ Y L+ +A+ + A + +EM
Sbjct: 283 FTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ 342
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+++ M + Q +F + G YN L++A GL
Sbjct: 343 QAGHEPDVYAYNALM--EAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGL 400
Query: 180 RERAARVLDEATKRGLFPELFRH 202
E A V +E +RG+ P + H
Sbjct: 401 HEDAEAVFEELKQRGMSPTMKSH 423
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 71/124 (57%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + + M ++G + ++NA++EA+ + G + A + + M+ + C+P+ +
Sbjct: 329 GLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASY 388
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y AGL ++++ F+E+K G+ P++ + +LLA +A+S ++ ++H
Sbjct: 389 NILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHK 448
Query: 122 NRIS 125
+ ++
Sbjct: 449 SGLT 452
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N +IE++ + + +A Y+ + + +C P E T +L YC AG + ++ E++
Sbjct: 178 YNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMR 237
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
GI P+ Y L K+ + A + M R + MI +
Sbjct: 238 EHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPM 297
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
++ VF+++ G + Y AL+ A GL E+A V +E + G P+++ +N L
Sbjct: 298 SSMK-VFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNAL 356
Query: 206 V 206
+
Sbjct: 357 M 357
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL + I S M G + S+N +++A+ + G E+A + E+++ P ++
Sbjct: 363 AGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKS 422
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L+ + +G +E ++ SG+ P +L YA++ R DD L M
Sbjct: 423 HMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAM 481
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G C+ +++++ +SG+ ++ + NA++ A+ + GR ++ + + ME+ R D + T
Sbjct: 434 GNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMER-RGDADVGTY 492
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ Y AG V + F + + G+ V+ + + YA+ + G+++EM
Sbjct: 493 NVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEM 550
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 105/252 (41%), Gaps = 13/252 (5%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + +L RM+ SG + ++++I AF + G+ EA K EM K R P+ T V
Sbjct: 214 EEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTV 273
Query: 65 LSVYCFAGLVDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+ C G + E++ +++ SG +LP V+ Y ++ KS+ +A LLD M
Sbjct: 274 IDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRM-CKA 332
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
N VT I + EY+ + G + Y L+ L + A
Sbjct: 333 GCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEA 392
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAISVWLNKMYE 232
RV++E G P L +N +V + V RM +G A + +
Sbjct: 393 ERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIV 452
Query: 233 MFMMGEDLPQLA 244
+M DL Q A
Sbjct: 453 NALMSSDLVQEA 464
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q ++ +M E G A N +FN++++ F + G ++A K M PN T A++
Sbjct: 112 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 171
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C + E+KE +E+K+SG+ P Y L+ K+++ ++A +L M + +
Sbjct: 172 LCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 231
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
V +I F + ++ + + YN +++ L LG A +L
Sbjct: 232 VVVYSSIIHA-FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVIL 290
Query: 188 DEATKRG-LFPELFRHNKLV 206
D+ + G + P++ ++ ++
Sbjct: 291 DQMQESGDVLPDVVTYSTVI 310
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 6/213 (2%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G N ++ A+I AF + + EEA+K EM + C PN T ++ C +V +
Sbjct: 52 GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAA 111
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
++ +++ G P+VM + L+ + K DDA LL M + +I G
Sbjct: 112 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 171
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ + E V +++ G Y+AL+ L E A ++L G P
Sbjct: 172 LCKSQKFLEAKE-VLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTP 230
Query: 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
++ +V+S +H + G L +M
Sbjct: 231 DV-----VVYSSIIHAFCKSGKLLEAQKTLQEM 258
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 12/195 (6%)
Query: 2 GLYKECQAILSRMSESG-VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E Q IL +M ESG V + +++ VI + EA K M K C+P+ T
Sbjct: 281 GKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVT 340
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G ++E++ Q +K +G P+V+ Y L++ K+ + D+A +++EM
Sbjct: 341 YTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMR 400
Query: 121 T-----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFD-KLNCEGYGLGMRFYNALLEAL 174
N ++ V G + G + Q+V+ + D + C Y ++ AL
Sbjct: 401 NAGCPPNLVTYNTMVNGLCVSGRIKEA--QQLVQRMKDGRAECSPDA---ATYRTIVNAL 455
Query: 175 WCLGLRERAARVLDE 189
L + A ++L++
Sbjct: 456 MSSDLVQEAEQLLEQ 470
>gi|414591144|tpg|DAA41715.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
Length = 521
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 104/232 (44%), Gaps = 30/232 (12%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD------ 55
G + + +L+ M GV N FN +I+ + + G ++A+K MEK+ +
Sbjct: 285 GQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKIGVELNIYTY 344
Query: 56 -------------PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102
PN T ++S++C G + E++ F+E+ G PSV+ Y +++
Sbjct: 345 NTLACGLCRMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHG 404
Query: 103 YAKSNRWDDAYGLLDEMHTNR-ISNIHQ----VTGQMIKGEFDDESNWQMVEYVFDKLNC 157
YAK R +A EM + +++ V G + G+ D + +F+++
Sbjct: 405 YAKKGRIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVD------VALKLFEEMKQ 458
Query: 158 EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
G + Y AL+ L G E A ++ D+ K GL P+ ++ LV S+
Sbjct: 459 RGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 510
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 91/207 (43%), Gaps = 7/207 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAF---RQGGRFEEAIKAYVEMEKVRCDPNE 58
G + + +L M GV+ N+ +N++++ + + GR +E ++ ME +
Sbjct: 145 GRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEI---MENEGIEATV 201
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T ++ A + + + F E+K++ ++ V Y ++ Y ++ A +LDE
Sbjct: 202 GTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDE 261
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
N + + G +IKG F + E + + +G GL +N +++ G
Sbjct: 262 CVGNGVEPNERTYGVLIKG-FCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKG 320
Query: 179 LRERAARVLDEATKRGLFPELFRHNKL 205
+ + A ++ K G+ ++ +N L
Sbjct: 321 MVDDALKIKAAMEKIGVELNIYTYNTL 347
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 4/168 (2%)
Query: 32 AFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV--YCFAGLVDESKEQFQEIKSSGI 89
+ R+ GR +A +E C + A + V C +G VD+++ ++ G+
Sbjct: 104 SLRRAGRLADA-AGLLERALGSCPGSVSPFAASVVVDGLCKSGRVDDARRLLDDMPRHGV 162
Query: 90 LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVE 149
+ +CY LL Y + +L+ M I T ++ + VE
Sbjct: 163 SLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVG-TYTILVDSLSTARDISKVE 221
Query: 150 YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+F+++ + Y A++ A G RAA+VLDE G+ P
Sbjct: 222 ALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEP 269
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 20/224 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +L +GV N ++ +I+ F + G+ E A +M+ N+
Sbjct: 250 GNMRRAAKVLDECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIF 309
Query: 62 EAVLSVYCFAGLVDES---KEQFQEIKSS----------------GILPSVMCYCMLLAV 102
++ YC G+VD++ K ++I G++P+ + Y L+++
Sbjct: 310 NTMIDGYCRKGMVDDALKIKAAMEKIGVELNIYTYNTLACGLCRMGVVPNYVTYTTLISI 369
Query: 103 YAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL 162
+ K +A L EM + MI G + + + E ++ +G+
Sbjct: 370 HCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHG-YAKKGRIREAERFRKEMEKKGFVP 428
Query: 163 GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ Y +L+ G + A ++ +E +RG P + + L+
Sbjct: 429 DVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALI 472
>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
Length = 738
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 4/203 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G L++ + ++S M E G+ N+ +NA ++ + E+A++ Y M++ RC N T
Sbjct: 367 GSLHR-AEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTET 425
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+++VY A S + F E+KS G P++ Y L+ +A+ + A + +EM
Sbjct: 426 FTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ 485
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+++ M + Q +F + G YN L++A GL
Sbjct: 486 QAGHEPDVYAYNALM--EAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGL 543
Query: 180 RERAARVLDEATKRGLFPELFRH 202
E A V +E +RG+ P + H
Sbjct: 544 HEDAEAVFEELKQRGMSPTMKSH 566
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 71/124 (57%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + + M ++G + ++NA++EA+ + G + A + + M+ + C+P+ +
Sbjct: 472 GLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASY 531
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y AGL ++++ F+E+K G+ P++ + +LLA +A+S ++ ++H
Sbjct: 532 NILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHK 591
Query: 122 NRIS 125
+ ++
Sbjct: 592 SGLT 595
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 4/200 (2%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
C+ IL R S + +N +IE++ + + +A Y+ + + +C P E T +L
Sbjct: 305 CEWILYR---SSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLR 361
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
YC AG + ++ E++ GI P+ Y L K+ + A + M R
Sbjct: 362 AYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRA 421
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ MI + ++ VF+++ G + Y AL+ A GL E+A V
Sbjct: 422 NTETFTLMINVYGKAKQPMSSMK-VFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEV 480
Query: 187 LDEATKRGLFPELFRHNKLV 206
+E + G P+++ +N L+
Sbjct: 481 FEEMQQAGHEPDVYAYNALM 500
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL + I S M G + S+N +++A+ + G E+A + E+++ P ++
Sbjct: 506 AGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKS 565
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L+ + +G +E ++ SG+ P +L YA++ R DD LL M
Sbjct: 566 HMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAM 624
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G C+ +++++ +SG+ ++ + NA++ A+ + GR ++ + ME+ R D + T
Sbjct: 576 SGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMER-RGDADVGT 634
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ Y AG V + F + + G+ V+ + + YA+ + G+++EM
Sbjct: 635 YNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEM 693
>gi|414875981|tpg|DAA53112.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
Length = 574
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 98/197 (49%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + G+ N ++N+++ + G+ E++IK EME++ T+ +VL+ +C
Sbjct: 283 VFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEEMEELGLACILSTMNSVLNGFC 342
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G++ E++ I G+ P+V+ Y L+ Y + + +A D M IS +
Sbjct: 343 KKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVK 402
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G F +W+ V + D++ +G + YN L+ AL C G +A ++LDE
Sbjct: 403 TYNCLITG-FTTSRDWRSVSGLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDE 461
Query: 190 ATKRGLFPELFRHNKLV 206
+ GL P+ +N ++
Sbjct: 462 MVEVGLEPKHVAYNTII 478
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 4/174 (2%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S NA++ A + R + A +A+ + R P+ T V+S +C G + ++ + + I
Sbjct: 155 SVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKAGDVAKNI 214
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAY---GLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+ G+ PSV Y L+ Y K + Y LL EM IS VT ++ +
Sbjct: 215 SAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISP-DVVTFNVLINGYCK 273
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
E N VF ++ +G + YN+L+ L G E + ++++E + GL
Sbjct: 274 EPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEEMEELGL 327
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ +L M E GV + ++N +I A G +A+K EM +V +P
Sbjct: 417 WRSVSGLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNT 476
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH--- 120
+++ +C G + E ++ +V+ Y + L + K + D+A +L+EM
Sbjct: 477 IINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLEKG 536
Query: 121 --TNRISNIHQVTGQMIKGEFDDESNW 145
NRI+ +G + KG D S +
Sbjct: 537 LVPNRITYEIINSGMIEKGYVPDISGY 563
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 20/230 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + + +++ G+ N ++N +++ +R+ G+ +EA A M PN +T
Sbjct: 345 GMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTY 404
Query: 62 EAVLSVYC-------FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG 114
+++ + +GL+DE KE+ G+ V+ Y +L+ A
Sbjct: 405 NCLITGFTTSRDWRSVSGLLDEMKEK-------GVKADVVTYNVLIGALCCKGEVRKAVK 457
Query: 115 LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
LLDEM + H +I G F ++ + Q + ++ + YN L+
Sbjct: 458 LLDEMVEVGLEPKHVAYNTIING-FCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYF 516
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAIS 224
+G + A VL+E ++GL P N++ + + M E G IS
Sbjct: 517 CKMGKMDEANVVLNEMLEKGLVP-----NRITYEIINSGMIEKGYVPDIS 561
>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Glycine max]
Length = 521
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 95/192 (49%), Gaps = 3/192 (1%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
+ GV NS +NA+I+ F + GR ++A+K M + C P+ T +L+ C G+VD
Sbjct: 217 KGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVD 276
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE-MHTNRISNIHQVTGQM 134
E+ + ++ SG+ P + Y LL + K+N D A+ ++ E M T + ++ V+
Sbjct: 277 EAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDV--VSYNT 334
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
+ F + +F+++ +G M +N L++A G ++LDE TK
Sbjct: 335 VITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMR 394
Query: 195 LFPELFRHNKLV 206
+ P+ + +V
Sbjct: 395 VLPDCIFYTAVV 406
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M G+ + +FN +I+AF + G K EM K+R P+ AV+ C
Sbjct: 351 LFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLC 410
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VD + F+++ +G+ P V+ Y LL + K++R DA L DEM + + +
Sbjct: 411 KNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYP-DE 469
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
VT ++I G + V+D++ G+ L L+ A+
Sbjct: 470 VTYKLIVGGLIRGKKISLACRVWDQMMERGFTLNRHLSETLVNAI 514
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 95/242 (39%), Gaps = 7/242 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E ++ M SGV + S+N +++ F + + A VE + + + +
Sbjct: 273 GMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSY 332
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V++ +C A + E F+E+ GI P ++ + +L+ + + LLDEM
Sbjct: 333 NTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTK 392
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R+ + + + VF + G + YNALL
Sbjct: 393 MRVLP-DCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVM 451
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYT-AISVWLNKMYEMFMMGEDL 240
A + DE +GL+P+ ++ + + V + G + A VW M F + L
Sbjct: 452 DAMHLFDEMQSKGLYPD-----EVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLNRHL 506
Query: 241 PQ 242
+
Sbjct: 507 SE 508
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 92/208 (44%), Gaps = 11/208 (5%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E + R+ + G++ + + A++ GGR + A + V + K N A
Sbjct: 170 FDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNA 229
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ +C G VD++ + + +G +P ++ Y +LL + D+A L++ M +
Sbjct: 230 LIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSG 289
Query: 124 ISNIHQVTGQMIKG----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +++KG D ++ MVE + K C+ YN ++ A +C
Sbjct: 290 VEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVS-----YNTVITA-FCKAR 343
Query: 180 RERAA-RVLDEATKRGLFPELFRHNKLV 206
R R + +E +G+ P++ N L+
Sbjct: 344 RTRKGYELFEEMCGKGIRPDMVTFNILI 371
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 5/201 (2%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
++L M G + +FN + + R E A++ + M DP+ + ++
Sbjct: 104 HSLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDA 163
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C A DE+ + ++ + G+ P L+ R D AY L+ + +
Sbjct: 164 LCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVN 223
Query: 128 HQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V +I G ++ + C + YN LL G+ + A R
Sbjct: 224 SLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVP---DLVTYNILLNYCCEEGMVDEAVR 280
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+++ + G+ P+L+ +N+L+
Sbjct: 281 LVETMERSGVEPDLYSYNELL 301
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 10/202 (4%)
Query: 10 ILSRMSESG-VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ M ESG + +++ ++++ + G+ ++A + M C PN T ++L
Sbjct: 206 LFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGL 265
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C AG +DE+ Q + SG P+++ Y ++ + K R D+AY LL+EM + +
Sbjct: 266 CKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM-VDGGCQPN 324
Query: 129 QVTGQMIKGEF----DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
VT ++ F E +VE + +K GY + YN+LL+ ERA
Sbjct: 325 VVTYTVLLDAFCKCGKAEDAIGLVEVMVEK----GYVPNLFTYNSLLDMFCKKDEVERAC 380
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++L ++G P + +N ++
Sbjct: 381 QLLSSMIQKGCVPNVVSYNTVI 402
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 9/224 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E A+L RM+ SG + N ++N +I+ + GR +EA EM C PN T
Sbjct: 268 AGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVT 327
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+L +C G +++ + + G +P++ Y LL ++ K + + A LL M
Sbjct: 328 YTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMI 387
Query: 120 HTNRISNI---HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ N+ + V + K E + + + + NC + +N +++A+
Sbjct: 388 QKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSN--NCVP---DIVTFNTIIDAMCK 442
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
+ A + + + G P L +N LV + R ++ Y
Sbjct: 443 TYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEY 486
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 98/250 (39%), Gaps = 37/250 (14%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+ CQ +LS M + G N S+N VI + + E + +M C P+ T +
Sbjct: 378 RACQ-LLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTI 436
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----- 119
+ C VD + E F I+ SG P+++ Y L+ KS R+D A LL EM
Sbjct: 437 IDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQG 496
Query: 120 ----------------HTNRISNIHQVTGQMIK-GEFDDESNWQMV-------------E 149
+ R+ +++ QM+ G D+ + +V
Sbjct: 497 CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEAN 556
Query: 150 YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV-WS 208
V + + G+ G Y L++ G ++A +L +G +P++ + + W
Sbjct: 557 NVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWL 616
Query: 209 VDVHRMWEGG 218
R+ + G
Sbjct: 617 SKRGRLRQAG 626
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 7/222 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M ++G A N S+N V+ F + R E A+ +M C P+ + V++ C
Sbjct: 66 LLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLC 125
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
VDE+ ++ G P+V+ Y L+ + + D A L+ +M T R +
Sbjct: 126 KLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKM-TERGYRPNA 184
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF-YNALLEALWCLGLRERAARVLD 188
+T I +F ++ G F Y+ ++++L G + A R+++
Sbjct: 185 ITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVE 244
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+G P N + +S +H + + G + L +M
Sbjct: 245 AMVSKGCSP-----NVVTYSSLLHGLCKAGKLDEATALLQRM 281
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 88/203 (43%), Gaps = 12/203 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ +M + G N ++ +++ F + G + A++ +M + PN T ++ C
Sbjct: 136 VMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLC 195
Query: 70 FAGLVDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNR 123
+D + + F+E++ SG P V Y ++ KS + DDA L++ M N
Sbjct: 196 SGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNV 255
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
++ + G G+ D+ + + ++ G + YN +++ LG + A
Sbjct: 256 VTYSSLLHGLCKAGKLDEAT------ALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEA 309
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+L+E G P + + L+
Sbjct: 310 YHLLEEMVDGGCQPNVVTYTVLL 332
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 103/239 (43%), Gaps = 17/239 (7%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+ G+ ++ +++ G+ +A+ + EM K C P+ T +++ +
Sbjct: 1 MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSKSDR 59
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIH 128
+D++ +E+ +G P+V Y +L + K+NR ++A LL++M + +S
Sbjct: 60 LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTT 119
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ G + D+ V DK+ G + Y L++ +G + A ++
Sbjct: 120 VINGLCKLDQVDEACR------VMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVR 173
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVV 247
+ T+RG +R N + ++ +H + G + +M E D+ +T+V
Sbjct: 174 KMTERG-----YRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIV 227
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 14/195 (7%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
+S ++N +I + R ++AI+ EM PN + VL +C A V+ +
Sbjct: 43 DSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLL 102
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIK 136
+++ G P V+ Y ++ K ++ D+A ++D+M N I+ V G
Sbjct: 103 EQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 162
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEATKRG- 194
G+ D VE V K+ GY YN ++ L C G + + A ++ E + G
Sbjct: 163 GDLDGA-----VELV-RKMTERGYRPNAITYNNIMHGL-CSGRKLDSALQLFKEMEESGS 215
Query: 195 LFPELFRHNKLVWSV 209
P++F ++ +V S+
Sbjct: 216 CPPDVFTYSTIVDSL 230
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E L+ M G N + N ++ + GR+ +A K +M + C P+ T
Sbjct: 243 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 302
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C GL+ + + +++ G P+ + Y LL + K + D A LD M
Sbjct: 303 NILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM-V 361
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+R VT + + + + ++L+ +G + YN +++ L +G E
Sbjct: 362 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTE 421
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA ++LDE ++GL P++ ++ LV
Sbjct: 422 RAIKLLDEMRRKGLKPDIITYSSLV 446
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 84/197 (42%), Gaps = 4/197 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM+ VA + ++N ++ G+ ++A++ + C P+ T ++ C
Sbjct: 149 VLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATC 205
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
V ++ + E+++ G P V+ Y +L+ K R D+A L+ M + +
Sbjct: 206 KESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQP-NV 264
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T +I W E + + +G + +N L+ L GL RA +L++
Sbjct: 265 ITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEK 324
Query: 190 ATKRGLFPELFRHNKLV 206
G P +N L+
Sbjct: 325 MPMHGCTPNSLSYNPLL 341
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 1/208 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ +L R + + ++ +IEA + +A+K EM P+ T
Sbjct: 173 GKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTY 232
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G +DE+ + + S G P+V+ + ++L + RW DA LL +M
Sbjct: 233 NVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLR 292
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
S VT ++ + + +K+ G YN LL +
Sbjct: 293 KGCSP-SVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMD 351
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
RA LD RG +P++ +N L+ ++
Sbjct: 352 RAIEYLDIMVSRGCYPDIVTYNTLLTAL 379
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL+++S G + ++N VI+ + G+ E AIK EM + P+ T +++S
Sbjct: 391 ILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLS 450
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VDE+ + F +++ GI P+ + Y ++ KS + D A L M + R
Sbjct: 451 REGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEA 510
Query: 130 VTGQMIKG 137
+I+G
Sbjct: 511 TYTILIEG 518
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 8/177 (4%)
Query: 35 QGGRFEEAIKAYVEMEKVRCD-PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV 93
+ G E+ K ++E R D P+ +++ +C G ++ + ++ SG +P V
Sbjct: 69 RNGELEDGFK-FLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDV 127
Query: 94 MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD 153
+ Y +L++ Y KS D+A +LD M+ VT I D + V D
Sbjct: 128 ITYNVLISGYCKSGEIDNALQVLDRMNVAP----DVVTYNTILRTLCDSGKLKQAMEVLD 183
Query: 154 K-LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ L E Y + Y L+EA +A ++LDE +G P++ +N L+ +
Sbjct: 184 RQLQKECYP-DVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGI 239
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 79/214 (36%), Gaps = 39/214 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ ++ + +SG + ++N +I + + G + A++ ++++ P+ T
Sbjct: 106 GKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQV---LDRMNVAPDVVTY 162
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L C +G + ++ E P V+ Y +L+ K + A LLDEM
Sbjct: 163 NTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMR- 221
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N+ S VT YN L+ + G +
Sbjct: 222 NKGSKPDVVT-----------------------------------YNVLINGICKEGRLD 246
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
A + L+ G P + HN ++ S+ W
Sbjct: 247 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRW 280
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 52/110 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M G+ + ++++++ + G+ +EAIK + ++E + PN T +++ C
Sbjct: 426 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 485
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ D + + + S P+ Y +L+ A +A LL+E+
Sbjct: 486 KSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 535
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + M++ G+ N FN +I A + G +EA+ + EM+ P+ T
Sbjct: 418 GRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTY 477
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S +C G + ++ E+F ++ S G+ P+ + Y L+ + A L+ EM +
Sbjct: 478 STLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMS 537
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I + V I +E VF+ + G + +N+L++ +G E
Sbjct: 538 KGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKME 597
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A VLD G+ P++ +N LV
Sbjct: 598 KAFGVLDAMVSVGIEPDVVTYNTLV 622
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV--RCDPNERTLEAVLSV 67
+L RMS+ G N+ S+N VI++ R +EA+ M K RC P+ + V+
Sbjct: 214 LLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHG 273
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ G V ++ E+ G+ P V+ Y ++ K+ D A +L +M +
Sbjct: 274 FFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPD 333
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+I G + +W+ +F K+ +G G+ +N+ + +L G + A +
Sbjct: 334 GLTYTAIIHG-YSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIF 392
Query: 188 DEATKRGLFPELFRHNKLV 206
T +G P+L ++ L+
Sbjct: 393 QYMTTKGHMPDLVSYSILL 411
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 100/260 (38%), Gaps = 40/260 (15%)
Query: 6 ECQAILSRMSESGVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+ + ++S M G+ R N F+++I + GR +A + + + P T ++
Sbjct: 527 KAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSL 586
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----- 119
+ YC G ++++ + S GI P V+ Y L++ Y KS + DD L EM
Sbjct: 587 IDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKV 646
Query: 120 ---------------HTNRISNIHQVTGQMI-KGEFDDESNWQMVE-------------Y 150
H R S ++ +MI G D ++++
Sbjct: 647 KPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAIT 706
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVD 210
+F KL + N ++ AL+ + RE A + + GL P N + V
Sbjct: 707 LFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVP-----NVSTYGVM 761
Query: 211 VHRMWEGGAYTAISVWLNKM 230
+H + + G+ + M
Sbjct: 762 IHNLLKEGSVEEADTMFSSM 781
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 9/194 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L M G+ + ++N ++ + + G+ ++ + + EM + P T VL
Sbjct: 601 GVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGL 660
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RI 124
AG +K+ F E+ SG + Y +LL +++ D+A L ++ I
Sbjct: 661 FHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDI 720
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ ++ V + K +E+N +F ++ G + Y ++ L G E A
Sbjct: 721 TILNTVINALYKVRRREEAND-----LFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEAD 775
Query: 185 RVLDEATKRGLFPE 198
+ K G P
Sbjct: 776 TMFSSMEKSGCAPS 789
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 87/217 (40%), Gaps = 5/217 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +KE + +M+ G+ +FN+ + + + GR ++A + + M P+ +
Sbjct: 348 GHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSY 407
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + F + GI+ + C+ +L++ +AK D+A + EM
Sbjct: 408 SILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQG 467
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ VT + F F ++ G Y++L+ G
Sbjct: 468 QGVRP-DVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLV 526
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+A ++ E +G+ P R N + +S +H + G
Sbjct: 527 KAKELVSEMMSKGI-P---RPNIVFFSSIIHSLCNEG 559
>gi|219363731|ref|NP_001136745.1| hypothetical protein [Zea mays]
gi|194696880|gb|ACF82524.1| unknown [Zea mays]
gi|414875980|tpg|DAA53111.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
Length = 421
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 102/200 (51%), Gaps = 3/200 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAF--RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
A+L M ++G++ + +FN +I + + G+ E++IK EME++ T+ +VL+
Sbjct: 127 ALLKEMIQAGISPDVVTFNVLINGYWLCREGKVEDSIKLVEEMEELGLACILSTMNSVLN 186
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+C G++ E++ I G+ P+V+ Y L+ Y + + +A D M IS
Sbjct: 187 GFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISP 246
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ +I G F +W+ V + D++ +G + YN L+ AL C G +A ++
Sbjct: 247 NVKTYNCLITG-FTTSRDWRSVSGLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKL 305
Query: 187 LDEATKRGLFPELFRHNKLV 206
LDE + GL P+ +N ++
Sbjct: 306 LDEMVEVGLEPKHVAYNTII 325
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 20/230 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + + +++ G+ N ++N +++ +R+ G+ +EA A M PN +T
Sbjct: 192 GMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTY 251
Query: 62 EAVLSVYC-------FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG 114
+++ + +GL+DE KE+ G+ V+ Y +L+ A
Sbjct: 252 NCLITGFTTSRDWRSVSGLLDEMKEK-------GVKADVVTYNVLIGALCCKGEVRKAVK 304
Query: 115 LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
LLDEM + H +I G F ++ + Q + ++ + YN L+
Sbjct: 305 LLDEMVEVGLEPKHVAYNTIING-FCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYF 363
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAIS 224
+G + A VL+E ++GL P N++ + + M E G IS
Sbjct: 364 CKMGKMDEANVVLNEMLEKGLVP-----NRITYEIINSGMIEKGYVPDIS 408
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ +L M E GV + ++N +I A G +A+K EM +V +P
Sbjct: 264 WRSVSGLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNT 323
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH--- 120
+++ +C G + E ++ +V+ Y + L + K + D+A +L+EM
Sbjct: 324 IINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLEKG 383
Query: 121 --TNRISNIHQVTGQMIKGEFDDESNW 145
NRI+ +G + KG D S +
Sbjct: 384 LVPNRITYEIINSGMIEKGYVPDISGY 410
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 16/192 (8%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S NA++ A + R + A +A+ + R P+ T V+S +C G + ++ + + I
Sbjct: 35 SVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKAGDVAKNI 94
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAY---GLLDEMHTNRISNIHQVTGQMIKG---- 137
+ G+ PSV Y L+ Y K + Y LL EM IS +I G
Sbjct: 95 SAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTFNVLINGYWLC 154
Query: 138 -EFDDESNWQMVEYVFDKLNCEGYGLG--MRFYNALLEALWCLGLRERAARVLDEATKRG 194
E E + ++VE + E GL + N++L G+ A +D +RG
Sbjct: 155 REGKVEDSIKLVEEM------EELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRG 208
Query: 195 LFPELFRHNKLV 206
+ P + +N LV
Sbjct: 209 MKPNVITYNTLV 220
>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
Length = 950
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ M + G+ + +N +I AF G + AI+ EM+K+R P RT ++ Y
Sbjct: 538 AVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGY 597
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+G + S E F ++ G +P+V + L+ + + + A +LDEM +S
Sbjct: 598 AKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANE 657
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++++G + EY F +L EG + + Y ALL+A G + A V
Sbjct: 658 HTYTKIMQGYASVGDTGKAFEY-FTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTK 716
Query: 189 EATKRGLFPELFRHNKLV 206
E + R + F +N L+
Sbjct: 717 EMSARNIPRNSFVYNILI 734
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 76/197 (38%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M G +FN +I + + E+A++ EM NE T ++ Y
Sbjct: 609 VFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 668
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ E F +++ G+ + Y LL KS R A + EM I
Sbjct: 669 SVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSF 728
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I G W+ + + ++ EG + Y + + A G RA + ++E
Sbjct: 729 VYNILIDGWARRGDVWEAADLI-QQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEE 787
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P + + L+
Sbjct: 788 MEALGVKPNIKTYTTLI 804
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RNS +N +I+ + + G EA +M+K P+ T
Sbjct: 706 GRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTY 765
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ +S AG ++ + + +E+++ G+ P++ Y L+ +A+++ + A +EM
Sbjct: 766 TSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEM 823
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M + GV + ++ + I A + G A + EME + PN +T ++
Sbjct: 745 EAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLI 804
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ A L +++ ++E+K+ GI P Y C+L ++ ++++
Sbjct: 805 KGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRAS 847
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 79/194 (40%), Gaps = 3/194 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E GV N +++ +I F + + A + +M K P+ ++S +C G
Sbjct: 508 MKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGN 567
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-NRISNIHQVTG 132
+D + + +E++ P+ + ++ YAKS + + D M + +H G
Sbjct: 568 MDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNG 627
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+I G + + VE + D++ G Y +++ +G +A
Sbjct: 628 -LINGLVEKRQMEKAVE-ILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQN 685
Query: 193 RGLFPELFRHNKLV 206
GL ++F + L+
Sbjct: 686 EGLDVDIFTYEALL 699
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 15/178 (8%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY-----CFAGLVDE 76
N+ + +I A Q E A EME E ++A +++Y + + DE
Sbjct: 411 NASIYGKIIYAHCQTCNMERAEALVREME-------EEGIDAPIAIYHTMMDGYTMVADE 463
Query: 77 SKE--QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134
K F+ +K G P+V+ Y L+ +Y K + A + M + + + M
Sbjct: 464 KKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMM 523
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
I G F +W VF+ + EG + YN ++ A +G +RA + + E K
Sbjct: 524 ING-FVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQK 580
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 18/174 (10%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N D++ AVI AF EK+ P+ ++ Y G + ++E F
Sbjct: 288 NGDNWQAVISAF----------------EKI-SKPSRTEFGLMVKFYGRRGDMHRARETF 330
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+ +++ GI P+ Y L+ YA D+A + +M I + VT +I G F
Sbjct: 331 ERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGI-EMSLVTYSVIVGGFSK 389
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ + +Y FD+ L Y ++ A ERA ++ E + G+
Sbjct: 390 AGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGI 443
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 71/170 (41%), Gaps = 13/170 (7%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
+R+ G+ + ++ A+++A + GR + A+ EM N ++ +
Sbjct: 680 FTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWAR 739
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G V E+ + Q++K G+ P + Y ++ +K+ + A ++EM + +
Sbjct: 740 RGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKT 799
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNC--EGYGLGMR----FYNALLEAL 174
+IKG W L+C E +G++ Y+ LL +L
Sbjct: 800 YTTLIKG-------WARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSL 842
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 104/221 (47%), Gaps = 13/221 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + + RM + + + +++ +I+ + + A+K + +M K +C PN T
Sbjct: 534 GMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTY 593
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C G +++ F+E++SSG+ P+V+ Y +L+ + K + A + M
Sbjct: 594 TSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTILIGCFCKEGKISKACSFFELMLL 653
Query: 122 NR-ISN-------IHQVTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYN 168
NR I N I+ +T + K E ++ F + +G+ + YN
Sbjct: 654 NRCIPNDVTFNYLINGLTNNLATAVSNKANESLEIKASLMMDFFRTMISDGWEQRVAAYN 713
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
++L L + A ++ D+ T +G+FP+ LV+ +
Sbjct: 714 SVLICLCHHKMVNAALQLRDKMTGKGIFPDPVSFAALVYGL 754
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 41/210 (19%)
Query: 2 GLYKECQ-----AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GL K+C +L M E GV N +N++++A + G E K + + C+P
Sbjct: 284 GLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEP 343
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+ T ++S C G V E++E + G+ P+ + Y L+ VY K + A+ L
Sbjct: 344 DITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFDL- 402
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
F + +G+ L + Y AL+ L
Sbjct: 403 -----------------------------------FIGMTEKGHPLDLVAYGALVHGLVA 427
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A V D+ +RG+ P+ +N L+
Sbjct: 428 AGEVDVALTVRDKMVERGVLPDANVYNVLM 457
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 1/180 (0%)
Query: 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
NA++ A Q + E A K Y EM K + ++ ++ C V+E ++ +
Sbjct: 174 NALLNALIQQKKVEIARKVYEEMVKRDGCWDNYSVCIMVRGLCKERKVEEGRKLINDRWG 233
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
G +P+++ Y L+ Y K + A GL E+ + G MI G + N++
Sbjct: 234 KGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMING-LCKKCNFK 292
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V+ + ++ G + ++ YN++++A G + + L T+ G P++ +N L+
Sbjct: 293 AVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDITTYNTLI 352
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 80/198 (40%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ +M E GV +++ +N ++ + GR A VEM + ++ +
Sbjct: 436 TVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGF 495
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G +DE+K+ F+ + G+ P V+ Y ++ Y K +DA + M S
Sbjct: 496 IRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDE 555
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+I G + +++ +F ++ + + Y +L+ G RA + +
Sbjct: 556 FTYSTIIDG-YVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFE 614
Query: 189 EATKRGLFPELFRHNKLV 206
E GL P + + L+
Sbjct: 615 EMRSSGLKPNVVTYTILI 632
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 10/161 (6%)
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
C PN ++ Y G V+ + F+E+K G LP+ Y +++ K +
Sbjct: 236 CIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMINGLCKKCNFKAVD 295
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYV--FDKLNCEGYGLGMRFYNALL 171
GLL EM + QV ++ + ++ + + + CE + YN L+
Sbjct: 296 GLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEP---DITTYNTLI 352
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
G A +L+ A KRGL P NKL ++ +H
Sbjct: 353 SGSCRDGKVHEAEELLEHAIKRGLSP-----NKLSYTPLIH 388
>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 67/123 (54%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L M + G+A N+ ++N++I+ F + R EEAI+ M CDP+ T
Sbjct: 347 GKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTF 406
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC A +D+ E F+E+ G++ + + Y L+ + +S + + A L EM +
Sbjct: 407 NILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVS 466
Query: 122 NRI 124
R+
Sbjct: 467 RRV 469
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + ++ RM E+G N ++ V+ + G+ A++ +ME+ +
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G +D + F E++ G ++ Y L+ + + RWDD LL +M
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+IS + VT ++ F E + + + ++ G YN+L++ E
Sbjct: 327 RKISP-NVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +++D +G P++ N L+
Sbjct: 386 EAIQMVDLMISKGCDPDIMTFNILI 410
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 1/192 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + +L M + ++ N +F+ +I++F + G+ EA + EM + PN T
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTIT 370
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +C ++E+ + + S G P +M + +L+ Y K+NR DD L EM
Sbjct: 371 YNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMS 430
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +++G F ++ + +F ++ + Y LL+ L G
Sbjct: 431 LRGVIANTVTYNTLVQG-FCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGEL 489
Query: 181 ERAARVLDEATK 192
E+A + + K
Sbjct: 490 EKALEIFGKIEK 501
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 85/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + M G + ++N +I F GR+++ K +M K + PN T ++ +
Sbjct: 285 LFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFV 344
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + E+ + +E+ GI P+ + Y L+ + K NR ++A ++D M +
Sbjct: 345 KEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIM 404
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G +E +F +++ G YN L++ G E A ++ E
Sbjct: 405 TFNILINGYCKANRIDDGLE-LFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQE 463
Query: 190 ATKRGLFPELFRHNKLV 206
R + P++ + L+
Sbjct: 464 MVSRRVRPDIVSYKILL 480
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 85/210 (40%), Gaps = 6/210 (2%)
Query: 2 GLYKECQA-----ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GL EC+ ++ RM E G + N ++ G+ +A+ M + P
Sbjct: 167 GLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQP 226
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
NE T VL+V C +G + E ++++ I + Y +++ K D+A+ L
Sbjct: 227 NEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLF 286
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+EM +T + G F + W + + + ++ L+++
Sbjct: 287 NEMEIKGFK-ADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVK 345
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G A ++L E +RG+ P +N L+
Sbjct: 346 EGKLREADQLLKEMMQRGIAPNTITYNSLI 375
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 85/200 (42%), Gaps = 1/200 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ + ++ + G ++ FN ++ R EA++ M ++ P TL +++
Sbjct: 144 STMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGL 203
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G V ++ + +G P+ + Y +L V KS + A LL +M I +
Sbjct: 204 CLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIK-LD 262
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
V +I + + +F+++ +G+ + YN L+ G + A++L
Sbjct: 263 AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLR 322
Query: 189 EATKRGLFPELFRHNKLVWS 208
+ KR + P + + L+ S
Sbjct: 323 DMIKRKISPNVVTFSVLIDS 342
>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
Length = 696
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 92/214 (42%), Gaps = 11/214 (5%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+A+L +M + + N ++N++I + G++ EA++ EM + PN T ++
Sbjct: 307 EAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDC 366
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C +GL E++E F + SG P+ Y LL YA D + D M N +
Sbjct: 367 LCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPG 426
Query: 128 HQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
V I G D+ S F+K+ +G+ + Y +++ L +G +
Sbjct: 427 RHVFNIEIYAYCKCGRLDEAS------LTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDD 480
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A + GL P++ N L+ +H WE
Sbjct: 481 AMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWE 514
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M ++G+ FN I A+ + GR +EA + +M++ P+ V+ C G
Sbjct: 418 MVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGR 477
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+D++ +F ++ G+ P ++ + L+ +A +W+ A L EM I
Sbjct: 478 LDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNS 537
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
MI F E +FD + G + YN ++ + G ++LD+
Sbjct: 538 MIDKLF-KEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLI 596
Query: 194 GLFPELFRHNKLV 206
GL P N L+
Sbjct: 597 GLKPTAVTFNTLL 609
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 98/245 (40%), Gaps = 9/245 (3%)
Query: 5 KECQAILSRMSESG--VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+E ++ M+E G N S+ VI F + G +A + +M PN T
Sbjct: 232 EEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCN 291
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+V+ C +D+++ Q++ I+P+ Y L+ Y S +W +A +L EM +
Sbjct: 292 SVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRD 351
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ VT M+ +F+ + G Y +LL G
Sbjct: 352 G-QRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVD 410
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQ 242
V D + G+ P RH V++++++ + G S+ NKM + M D+
Sbjct: 411 MNNVKDLMVQNGMRPG--RH---VFNIEIYAYCKCGRLDEASLTFNKMQQQGFM-PDIVA 464
Query: 243 LATVV 247
TV+
Sbjct: 465 YTTVI 469
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G++ + +FN +I F G++E+A + + EM PN T +++ G
Sbjct: 487 QMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEG 546
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
V E+++ F + +G P+V+ Y ++ Y + + LLD+M
Sbjct: 547 KVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDM 593
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 49/99 (49%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + + M + G+ N ++FN++I+ + G+ EA K + M + PN +
Sbjct: 511 GKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSY 570
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
++ Y AG V E + ++ G+ P+ + + LL
Sbjct: 571 NTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLL 609
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G++ + +A+L +MS G + NS +N +I A + G+ +EA++ EM+ C P+ T
Sbjct: 400 GMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTY 459
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C +DE++ F + G++ + + Y L+ S RW + L +EM
Sbjct: 460 NTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVL 519
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + V+ + E N + +++ +G YN L+ L G
Sbjct: 520 HGCP-LDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVR 578
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + E +GL P++ +N L+
Sbjct: 579 DALELSKEMLNQGLTPDIVTYNTLI 603
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 7/216 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ A+L M+ G ++ + VI A G EA EM + C + T
Sbjct: 194 GRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTF 253
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ C G V E+ + G PSV+ Y LL ++ + D+AY +L
Sbjct: 254 NDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAML----- 308
Query: 122 NRISNIHQVT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
R+ ++ V +I+G + + E +++ + +G + YN L+ L LG
Sbjct: 309 GRVPEVNVVMLNTVIRGCLAEGKLARATE-LYEMMGSKGCPPDVHTYNILMHGLCKLGRC 367
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A R+LDE ++G P + ++ L+ S + MW+
Sbjct: 368 GSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWD 403
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 3/194 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + I + E GV N ++N +I A GR++E ++ EM C + + ++
Sbjct: 474 EAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLI 533
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G VD S +E+ + GI P+ Y ML+ K+ + DA L EM ++
Sbjct: 534 KALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLT 593
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEY-VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+I G + W + +KL E + YN L+ + L + A+
Sbjct: 594 PDIVTYNTLINGLC--KVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAS 651
Query: 185 RVLDEATKRGLFPE 198
+LD+A G+ P
Sbjct: 652 MLLDKAVSGGIVPN 665
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 79/204 (38%), Gaps = 40/204 (19%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A+L R+ E V N VI G+ A + Y M C P+ T ++
Sbjct: 303 EAYAMLGRVPEVNVVM----LNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILM 358
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G + E++ G P+++ Y LL + ++ WDDA +LD+M
Sbjct: 359 HGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQM------ 412
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +G+ + + YN ++ AL G + A R
Sbjct: 413 ------------------------------SAKGFSMNSQGYNGIIYALGKDGKLDEAMR 442
Query: 186 VLDEATKRGLFPELFRHNKLVWSV 209
++ E +G P++ +N +++ +
Sbjct: 443 LVQEMKSQGCKPDICTYNTIIYHL 466
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 59/127 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M G+ N+ S+N +I + G+ +A++ EM P+ T +++ C
Sbjct: 548 LLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLC 607
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + +++ + + P ++ Y +L++ + K DDA LLD+ + I +
Sbjct: 608 KVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNER 667
Query: 130 VTGQMIK 136
G M++
Sbjct: 668 TWGMMVQ 674
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E + + M G + S+N +I+A + G + ++ EM PN +
Sbjct: 505 GRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSY 564
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C AG V ++ E +E+ + G+ P ++ Y L+ K A LL+++
Sbjct: 565 NMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPN 624
Query: 122 NRISNIHQ 129
N+H
Sbjct: 625 ---ENVHP 629
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 14/204 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M E G + N ++ A+I+ + G+ + ++K + +M C PN T +++ C
Sbjct: 735 LLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCC 794
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AGL+DE+ E+K + + Y AV S ++ + GLL+EM ++ I
Sbjct: 795 AAGLLDEAHLLLDEMKHTHWPKHLQGY--HCAVQGFSKKFIASLGLLEEMESHETVPIAP 852
Query: 130 VTGQMIKG-------EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
V G +I E E + ++VE V LN G+ Y +L++AL E
Sbjct: 853 VYGMLIDSFSKAGRLETALELHKELVE-VSSSLNMTSTGM----YASLIQALCLASQVEE 907
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A + E T++G+ P+L LV
Sbjct: 908 AFTLYTEMTRKGIVPDLIVFVSLV 931
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ IL M G ++ ++ VI Q + E++ + EM++ +P+ T
Sbjct: 431 GKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTY 490
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +C AGL+++++ F E++S G P+V+ Y LL Y KS + A+ + M
Sbjct: 491 TILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRM 548
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 92/217 (42%), Gaps = 16/217 (7%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
+A N ++ A+I+ + + +A + M C+PN+ +A++ +C G +D ++
Sbjct: 604 IAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQ 663
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQ 133
E F + G LPSV Y L+ K R D A +L EM + N ++ + G
Sbjct: 664 EVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGL 723
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
GE + N + + +G + Y AL++ L G + + ++ + +
Sbjct: 724 SKVGEIEKALN------LLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSK 777
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
G P N + + V ++ G + L++M
Sbjct: 778 GCAP-----NYVTYRVLINHCCAAGLLDEAHLLLDEM 809
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 17/222 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL ++ ++ M G + N ++ A++ A+ + + +A + M C PN T
Sbjct: 500 AGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVT 559
Query: 61 LEAVLSVYCFAGLVDESKEQFQE-IKSSG---------------ILPSVMCYCMLLAVYA 104
A++ C AG + ++ E +++ I +SG I P+V+ Y L+
Sbjct: 560 YSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLC 619
Query: 105 KSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGM 164
K+ + DA+ LLD M V +I G F + VF ++ GY +
Sbjct: 620 KAQKVSDAHELLDAMLAAGCEPNQIVYDALIDG-FCKIGKIDNAQEVFLRMTKCGYLPSV 678
Query: 165 RFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
Y +L++ ++ G + A +VL E P + + ++
Sbjct: 679 HTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMI 720
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
G+FE+A + EM + P+ T V++ C A V++S FQE+K +G+ P V Y
Sbjct: 431 GKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTY 490
Query: 97 CMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ + K+ + A DEM +
Sbjct: 491 TILIDSFCKAGLIEQARSWFDEMRS 515
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 56/114 (49%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + RM++ G + ++ ++I+ + GR + A+K EM C+PN T A++
Sbjct: 663 QEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDG 722
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
G ++++ ++ G P+V+ Y L+ K+ + D + L +M++
Sbjct: 723 LSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNS 776
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL---EAVL 65
+L M + + +I++F + GR E A++ + E+ +V N + +++
Sbjct: 837 GLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLI 896
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
C A V+E+ + E+ GI+P ++ + L+ + N+WD+A L
Sbjct: 897 QALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQL 946
>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 864
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 6/196 (3%)
Query: 14 MSESGV-ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
MS G A NS S++ +I + GR EEA +M + C P+ RT ++ C G
Sbjct: 256 MSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRG 315
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
L+D++ F E+ + G P+V Y +L+ + + ++A G+ +M + I
Sbjct: 316 LIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYN 375
Query: 133 QMIKGEFDDESNWQMVEY--VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+I G D E V +K C+ +R +N L+E L +G +A +L
Sbjct: 376 ALINGYCKDGRVVPAFELLTVMEKRACKP---NVRTFNELMEGLCRVGKPYKAVHLLKRM 432
Query: 191 TKRGLFPELFRHNKLV 206
GL P++ +N L+
Sbjct: 433 LDNGLSPDIVSYNVLI 448
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + +M + G+ + ++NA+I + + GR A + MEK C PN RT
Sbjct: 350 GKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTF 409
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G ++ + + +G+ P ++ Y +L+ + + AY LL M++
Sbjct: 410 NELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNS 469
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 55/112 (49%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE A+L ++++ G+ + ++ +++ + G + + M+ C PN
Sbjct: 559 GCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYP 618
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+++ C G V+E+++ ++ SG+ P+ + Y +++ Y + + D A
Sbjct: 619 YTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRA 670
>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 444
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 11/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + M+ GV N ++N++I G+ EA +M +PN T A+L+ +C
Sbjct: 237 VFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFC 296
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
+V ++ E F+++ I P+V Y +L+ Y K +DA+ L M + +
Sbjct: 297 KNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPDVS 356
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + G KG+ + N +++ + + YN L+++L G ++
Sbjct: 357 TYNCLIVGLCRKGDLEGARNR------VSEMDTKHLKADLITYNILMDSLCNKGEMKKTL 410
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
R+LDE K+GL P +N ++
Sbjct: 411 RLLDEMCKKGLKPSQLTYNTMI 432
>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
Length = 961
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 8/222 (3%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++E +L + + + ++N VI A + G+ E+A+K Y +M P+ T A
Sbjct: 362 WEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTA 421
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-N 122
++S Y G V+++ E F+++ G +V+ Y L++ K+ RW+ A L +MH N
Sbjct: 422 LISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKEN 481
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
N+ VT + +W+ +F+++ +G Y L+ A G R
Sbjct: 482 CKPNV--VTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRR 539
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAIS 224
A + ++ +G P+ N L + +W+ G A S
Sbjct: 540 ALKAFEQMQTQGCHPDAAVFNSL-----MEVLWQSGVLLAQS 576
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 99/208 (47%), Gaps = 1/208 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +M E G + N ++N +I+ + + ++EEA+K +EK RT V+S
Sbjct: 331 QDVYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISA 390
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+G +++ + ++++ ++G+ PS Y L++ Y K + + A + +M R
Sbjct: 391 CNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDM-IRRGCER 449
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ +T + + W+M +F K++ E + +N+L+ A G E+A+ +
Sbjct: 450 NVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELF 509
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMW 215
++ +G P+ + L+ + + W
Sbjct: 510 EQMQTQGCKPDSITYCGLITAYERGGQW 537
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 95/199 (47%), Gaps = 4/199 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ + +M +GV ++ ++ A+I A+ + G+ E+A++ + +M + C+ N T
Sbjct: 394 SGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVIT 453
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++S AG + + E F ++ P+V+ + L+A + W+ A L ++M
Sbjct: 454 YSSLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQ 513
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL- 179
T +T + ++ W+ F+++ +G +N+L+E LW G+
Sbjct: 514 TQGCKP-DSITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQSGVL 572
Query: 180 --RERAARVLDEATKRGLF 196
+ +A ++ A + G F
Sbjct: 573 LAQSKALQLWTLANRSGHF 591
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 85/192 (44%), Gaps = 1/192 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +I + A++ EM D N T A+++V A +D +++ ++++
Sbjct: 278 TYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQM 337
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G P+++ Y +L+ VY K +W++A +LD + I + +I
Sbjct: 338 LEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQP 397
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
Q ++ V++K+ G Y AL+ A G E+A + + +RG + ++
Sbjct: 398 EQALK-VYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSS 456
Query: 205 LVWSVDVHRMWE 216
L+ + + WE
Sbjct: 457 LISACEKAGRWE 468
>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
[Vitis vinifera]
gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 12/224 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + +R+ G + ++N++++ F + G + EA+ EMEK C P+ T
Sbjct: 294 GLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTY 353
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
+++ Y AG +E + + GI+P+ + Y ++ Y K+ + D A +M
Sbjct: 354 NELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKE 413
Query: 121 TNRISNIHQVTGQMIKGEFDDESNW-QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + N+ T I G +S +M++ + D + G +N +L G+
Sbjct: 414 SGCVPNV--CTYNAILGMLGKKSRLEEMIDMLCD-MRSNGCAPNSVTWNTMLAMCGNKGM 470
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWS-------VDVHRMWE 216
+ RV E G P N L+ + +DV +M+E
Sbjct: 471 HKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYE 514
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G++K + M G N D+FNA+I A+ + G + +K Y EM K P T
Sbjct: 469 GMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTY 528
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+L+ G + ++ ++KS G P+ Y ++L YAK + +E++
Sbjct: 529 NALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYN 588
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I + ++ F + M E F + GY + +N++L + +
Sbjct: 589 GHIFPSWILLRTLVLANFKRRALMGM-ERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYD 647
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA +L + GL P+L +N L+
Sbjct: 648 RAHEMLRLIRESGLQPDLVTYNSLM 672
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYV-EMEKVRCDPNERT 60
G Y+ + +M ++G++ ++N +++ + + GR I + EM + +E T
Sbjct: 223 GKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFT 282
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+S GL+DE+++ F +KS G + Y LL V+ K+ + +A +L EM
Sbjct: 283 CSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEME 342
Query: 121 TNR----ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N + +++ ++ F +E +++ D + +G Y ++ A
Sbjct: 343 KNNCPPDLVTYNELVAAYVRAGFHEEG----ADFI-DTMIRKGIMPNAITYTTVINAYGK 397
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G ++A + + G P + +N ++
Sbjct: 398 AGKEDKALSFFRQMKESGCVPNVCTYNAIL 427
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 3/190 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ +M ESG N ++NA++ + R EE I +M C PN T +L++
Sbjct: 406 SFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMC 465
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G+ F+E+KS G P+ + L+ Y + D + +EM +
Sbjct: 466 GNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCV 525
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ +W+ E V + +G+ Y+ +L + G R ++
Sbjct: 526 TTYNALLNA-LARRGDWEAAESVILDMKSKGFKPNETSYSLMLNC-YAKGGNGRGIEKIE 583
Query: 189 EATKRG-LFP 197
E G +FP
Sbjct: 584 EEIYNGHIFP 593
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 91/226 (40%), Gaps = 39/226 (17%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G A NS ++N ++ G + + + EM+ +PN T A++ Y
Sbjct: 442 MLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYG 501
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + + ++E+ +G P V Y LL A+ W+ A ++ +M +
Sbjct: 502 RCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKS-------- 553
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNC---EGYGLGM-----RFYNA-------LLEAL 174
KG +E+++ ++ LNC G G G+ YN LL L
Sbjct: 554 ------KGFKPNETSYSLM------LNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTL 601
Query: 175 WCLGLRERA----ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ RA R E K G P+L N ++ ++M++
Sbjct: 602 VLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYD 647
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG---RFEEAIKAYVEMEKVRCDPNER 59
+Y +L + ESG+ + ++N++++ + +GG + EE +K ++K P+
Sbjct: 645 MYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKG---IQKSGGKPDLV 701
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYA 104
+ V+ +C GL+ E+ E+ SGI P ++ Y +A Y+
Sbjct: 702 SYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYS 746
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ IL + +SG + S+N VI+ F + G +EAI+ EM P T ++
Sbjct: 685 EEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAG 744
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
Y G+ E +E + P+ + Y +++ Y K ++ +A +SNI
Sbjct: 745 YSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDF--------VSNI 796
Query: 128 HQVTGQMIKGEFDDES 143
+ + FDD+S
Sbjct: 797 TE-----MDKSFDDQS 807
>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
Length = 414
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 67/120 (55%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ A+ + M SG+ N+ ++N +I + + G A++ Y +M ++RC P+ T
Sbjct: 166 AGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVT 225
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ YC G +D++ + ++ I P+V + +++ K NR D+A GLL+E++
Sbjct: 226 FSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELN 285
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/188 (18%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SFN VI+ + G+ ++A++ M + C P+ T ++ C V E + +
Sbjct: 84 SFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRL 143
Query: 85 KSSGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK--GEFDD 141
+ G+ +P+V+ + +++ Y K+ + +DA + ++M + I +I G+ D
Sbjct: 144 QRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGD 203
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+ V +L C + +++L++ G + A R+ + + + P ++
Sbjct: 204 LGSAVEVYQQMTRLRCPP---DVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYT 260
Query: 202 HNKLVWSV 209
+ ++ S+
Sbjct: 261 FSIIIHSL 268
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD--PNERTLEAVLSV 67
I S M++ + N +F+ +I + + R +EAI E+ +R D P V+ V
Sbjct: 245 IWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNEL-NLRPDIAPQAFIYNPVIDV 303
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G VDE+ + ++ G P Y +L+ Y +R +A EM
Sbjct: 304 LCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 355
>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
Length = 821
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 12/224 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + +R+ G + ++N++++ F + G + EA+ EMEK C P+ T
Sbjct: 294 GLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTY 353
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
+++ Y AG +E + + GI+P+ + Y ++ Y K+ + D A +M
Sbjct: 354 NELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKE 413
Query: 121 TNRISNIHQVTGQMIKGEFDDESNW-QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + N+ T I G +S +M++ + D + G +N +L G+
Sbjct: 414 SGCVPNV--CTYNAILGMLGKKSRLEEMIDMLCD-MRSNGCAPNSVTWNTMLAMCGNKGM 470
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWS-------VDVHRMWE 216
+ RV E G P N L+ + +DV +M+E
Sbjct: 471 HKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYE 514
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G++K + M G N D+FNA+I A+ + G + +K Y EM K P T
Sbjct: 469 GMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTY 528
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+L+ G + ++ ++KS G P+ Y ++L YAK + +E++
Sbjct: 529 NALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYN 588
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I + ++ F + M E F + GY + +N++L + +
Sbjct: 589 GHIFPSWILLRTLVLANFKRRALMGM-ERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYD 647
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA +L + GL P+L +N L+
Sbjct: 648 RAHEMLRLIRESGLQPDLVTYNSLM 672
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYV-EMEKVRCDPNERT 60
G Y+ + +M ++G++ ++N +++ + + GR I + EM + +E T
Sbjct: 223 GKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFT 282
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+S GL+DE+++ F +KS G + Y LL V+ K+ + +A +L EM
Sbjct: 283 CSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEME 342
Query: 121 TNR----ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N + +++ ++ F +E +++ D + +G Y ++ A
Sbjct: 343 KNNCPPDLVTYNELVAAYVRAGFHEEG----ADFI-DTMIRKGIMPNAITYTTVINAYGK 397
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G ++A + + G P + +N ++
Sbjct: 398 AGKEDKALSFFRQMKESGCVPNVCTYNAIL 427
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 3/190 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ +M ESG N ++NA++ + R EE I +M C PN T +L++
Sbjct: 406 SFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMC 465
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G+ F+E+KS G P+ + L+ Y + D + +EM +
Sbjct: 466 GNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCV 525
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ +W+ E V + +G+ Y+ +L + G R ++
Sbjct: 526 TTYNALLNA-LARRGDWEAAESVILDMKSKGFKPNETSYSLMLNC-YAKGGNGRGIEKIE 583
Query: 189 EATKRG-LFP 197
E G +FP
Sbjct: 584 EEIYNGHIFP 593
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 91/226 (40%), Gaps = 39/226 (17%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G A NS ++N ++ G + + + EM+ +PN T A++ Y
Sbjct: 442 MLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYG 501
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + + ++E+ +G P V Y LL A+ W+ A ++ +M +
Sbjct: 502 RCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKS-------- 553
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNC---EGYGLGM-----RFYNA-------LLEAL 174
KG +E+++ ++ LNC G G G+ YN LL L
Sbjct: 554 ------KGFKPNETSYSLM------LNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTL 601
Query: 175 WCLGLRERA----ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ RA R E K G P+L N ++ ++M++
Sbjct: 602 VLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYD 647
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG---RFEEAIKAYVEMEKVRCDPNER 59
+Y +L + ESG+ + ++N++++ + +GG + EE +K ++K P+
Sbjct: 645 MYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKG---IQKSGGKPDLV 701
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYA 104
+ V+ +C GL+ E+ E+ SGI P ++ Y +A Y+
Sbjct: 702 SYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYS 746
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ IL + +SG + S+N VI+ F + G +EAI+ EM P T ++
Sbjct: 685 EEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAG 744
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
Y G+ E +E + P+ + Y +++ Y K ++ +A +SNI
Sbjct: 745 YSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDF--------VSNI 796
Query: 128 HQVTGQMIKGEFDDES 143
+ + FDD+S
Sbjct: 797 TE-----MDKSFDDQS 807
>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g04810, chloroplastic; AltName: Full=Maize PPR4
homolog; Short=AtPPR4; Flags: Precursor
gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 952
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ M + G+ + +N +I AF G + AI+ EM+K+R P RT ++ Y
Sbjct: 540 AVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGY 599
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+G + S E F ++ G +P+V + L+ + + + A +LDEM +S
Sbjct: 600 AKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANE 659
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++++G + EY F +L EG + + Y ALL+A G + A V
Sbjct: 660 HTYTKIMQGYASVGDTGKAFEY-FTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTK 718
Query: 189 EATKRGLFPELFRHNKLV 206
E + R + F +N L+
Sbjct: 719 EMSARNIPRNSFVYNILI 736
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 76/197 (38%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M G +FN +I + + E+A++ EM NE T ++ Y
Sbjct: 611 VFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 670
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ E F +++ G+ + Y LL KS R A + EM I
Sbjct: 671 SVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSF 730
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I G W+ + + ++ EG + Y + + A G RA + ++E
Sbjct: 731 VYNILIDGWARRGDVWEAADLI-QQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEE 789
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P + + L+
Sbjct: 790 MEALGVKPNIKTYTTLI 806
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RNS +N +I+ + + G EA +M+K P+ T
Sbjct: 708 GRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTY 767
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ +S AG ++ + + +E+++ G+ P++ Y L+ +A+++ + A +EM
Sbjct: 768 TSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEM 825
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M + GV + ++ + I A + G A + EME + PN +T ++
Sbjct: 747 EAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLI 806
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ A L +++ ++E+K+ GI P Y C+L ++ ++++
Sbjct: 807 KGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRAS 849
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 79/194 (40%), Gaps = 3/194 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E GV N +++ +I F + + A + +M K P+ ++S +C G
Sbjct: 510 MKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGN 569
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-NRISNIHQVTG 132
+D + + +E++ P+ + ++ YAKS + + D M + +H G
Sbjct: 570 MDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNG 629
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+I G + + VE + D++ G Y +++ +G +A
Sbjct: 630 -LINGLVEKRQMEKAVE-ILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQN 687
Query: 193 RGLFPELFRHNKLV 206
GL ++F + L+
Sbjct: 688 EGLDVDIFTYEALL 701
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 15/178 (8%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY-----CFAGLVDE 76
N+ + +I A Q E A EME E ++A +++Y + + DE
Sbjct: 413 NASIYGKIIYAHCQTCNMERAEALVREME-------EEGIDAPIAIYHTMMDGYTMVADE 465
Query: 77 SKE--QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134
K F+ +K G P+V+ Y L+ +Y K + A + M + + + M
Sbjct: 466 KKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMM 525
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
I G F +W VF+ + EG + YN ++ A +G +RA + + E K
Sbjct: 526 ING-FVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQK 582
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 18/174 (10%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N D++ AVI AF EK+ P+ ++ Y G + ++E F
Sbjct: 290 NGDNWQAVISAF----------------EKI-SKPSRTEFGLMVKFYGRRGDMHRARETF 332
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+ +++ GI P+ Y L+ YA D+A + +M I + VT +I G F
Sbjct: 333 ERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGI-EMSLVTYSVIVGGFSK 391
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ + +Y FD+ L Y ++ A ERA ++ E + G+
Sbjct: 392 AGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGI 445
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 71/170 (41%), Gaps = 13/170 (7%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
+R+ G+ + ++ A+++A + GR + A+ EM N ++ +
Sbjct: 682 FTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWAR 741
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G V E+ + Q++K G+ P + Y ++ +K+ + A ++EM + +
Sbjct: 742 RGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKT 801
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNC--EGYGLGMR----FYNALLEAL 174
+IKG W L+C E +G++ Y+ LL +L
Sbjct: 802 YTTLIKG-------WARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSL 844
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 9/211 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++GV N ++N+++ + + +EAI +M +P+ T +++ C
Sbjct: 253 VLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLC 312
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + YC LL YA + + LLD M N I H
Sbjct: 313 KNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHH 372
Query: 130 VTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V +I K E DE+ VF K+ G + Y A++ L G + A
Sbjct: 373 VFNILICAYAKQEKVDEAML-----VFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAML 427
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
++ GL P + + L+ S+ + W+
Sbjct: 428 YFEQMIDEGLTPNIIVYTSLIHSLCIFDKWD 458
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 98/215 (45%), Gaps = 21/215 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L M +G+ + FN +I A+ + + +EA+ + +M + +PN T
Sbjct: 350 GALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTY 409
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
AV+ + C +G VD++ F+++ G+ P+++ Y L+ ++WD A L+ EM
Sbjct: 410 GAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLD 469
Query: 122 ----------NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
N I + H G++I+ E +FD + G + Y+ L+
Sbjct: 470 RGICLNTIFFNSIIHSHCKEGRVIES-----------EKLFDLMVRIGVKPNVITYSTLI 518
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ G + A ++L G+ P+ +N L+
Sbjct: 519 DGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLI 553
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 1/181 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + ++ M + G+ N+ FN++I + + GR E+ K + M ++ PN T ++
Sbjct: 459 KAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLI 518
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
YC AG +DE+ + + S G+ P + Y L+ Y + +R DDA L EM ++ +S
Sbjct: 519 DGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVS 578
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+++G F E ++ + G L + YN +L L L + A R
Sbjct: 579 PNIITYNIILQGLFHTRRTAAAKE-LYVGITKSGTQLELSTYNIILHGLCKNNLTDEALR 637
Query: 186 V 186
+
Sbjct: 638 M 638
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 1/191 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G A + S+ VI F + G ++A Y EM R P+ T ++++ C +D++
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
E + +G++P+ M Y +L Y S + +A G L +M ++ + VT +
Sbjct: 251 MEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEP-DVVTYNSLMD 309
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+FD + G + Y LL+ G +LD + G+ P
Sbjct: 310 YLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHP 369
Query: 198 ELFRHNKLVWS 208
+ N L+ +
Sbjct: 370 DHHVFNILICA 380
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 13/180 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +LS M G+ + ++N +I + + R ++A+ + EM PN T
Sbjct: 524 AGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT 583
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA------YG 114
+L +KE + I SG + Y ++L K+N D+A
Sbjct: 584 YNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 643
Query: 115 LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
L D R NI + G ++K +DE+ + +F L+ G +R Y+ + E L
Sbjct: 644 LTDLQLETRTFNI--MIGALLKVGRNDEA-----KDLFAALSANGLVPDVRTYSLMAENL 696
>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
Length = 583
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 67/120 (55%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ A+ + M SG+ N+ ++N +I + + G A++ Y +M ++RC P+ T
Sbjct: 335 AGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVT 394
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ YC G +D++ + ++ I P+V + +++ K NR D+A GLL+E++
Sbjct: 395 FSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELN 454
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/188 (18%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SFN VI+ + G+ ++A++ M + C P+ T ++ C V E + +
Sbjct: 253 SFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRL 312
Query: 85 KSSGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK--GEFDD 141
+ G+ +P+V+ + +++ Y K+ + +DA + ++M + I +I G+ D
Sbjct: 313 QRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGD 372
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+ V +L C + +++L++ G + A R+ + + + P ++
Sbjct: 373 LGSAVEVYQQMTRLRCPP---DVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYT 429
Query: 202 HNKLVWSV 209
+ ++ S+
Sbjct: 430 FSIIIHSL 437
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD--PNERTLEAVLSV 67
I S M++ + N +F+ +I + + R +EAI E+ +R D P V+ V
Sbjct: 414 IWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNEL-NLRPDIAPQAFIYNPVIDV 472
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G VDE+ + ++ G P Y +L+ Y +R +A EM
Sbjct: 473 LCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 524
>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Brachypodium distachyon]
Length = 904
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K IL M SG A ++NA+I + + E A+ +M PNE T
Sbjct: 562 AGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHT 621
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y G + ++ E F +IK G+ V Y LL KS R A + EM
Sbjct: 622 YTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMS 681
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T +I+ V +I G W+ + + ++ +G + Y + + A G
Sbjct: 682 TQKIARNTFVYNILIDGWARRGDVWEAAD-LMKQMKEDGVPPNIHTYTSYINACCKAGDM 740
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+RA +V++E GL P L + L+
Sbjct: 741 QRAQKVIEEMADVGLKPNLKTYTTLI 766
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+I M +SG+ + +N +IEAF + G + AI+ +M+K R P+ R ++ +
Sbjct: 500 SIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGF 559
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG + + ++ SG P+VM Y L+ K N+ + A +L++M I+
Sbjct: 560 AVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNE 619
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+++G + + EY F K+ G L + Y LL A G + A V
Sbjct: 620 HTYTIIMRGYAANGDIGKAFEY-FTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTR 678
Query: 189 EATKRGLFPELFRHNKLV 206
E + + + F +N L+
Sbjct: 679 EMSTQKIARNTFVYNILI 696
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 12/197 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+KE +A L + N ++ +I A Q G + A + EME+ D
Sbjct: 361 LFKEAKAKLGDL-------NGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYH 413
Query: 63 AVLSVYCFAGLVDESK--EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ Y + DE K F+ +K PS++ Y L+ +Y K + A + EM
Sbjct: 414 SMMHGYTI--IQDEKKCLIVFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEME 471
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ I + ++ +I G F ++ +F+++ G YN L+EA +G
Sbjct: 472 SYGIKHNNKTYSMLISG-FIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNM 530
Query: 181 ERAARVLDEATKRGLFP 197
+RA R+L++ K + P
Sbjct: 531 DRAIRILEKMQKERMQP 547
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS +ARN+ +N +I+ + + G EA +M++ PN T
Sbjct: 668 GRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTY 727
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ ++ C AG + +++ +E+ G+ P++ Y L+ +AK++ D A +EM
Sbjct: 728 TSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEM 785
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M E GV N ++ + I A + G + A K EM V PN +T ++
Sbjct: 707 EAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLI 766
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ A L D + + F+E+K +G+ P Y C++ ++ +++
Sbjct: 767 KGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLVTSLLSRAT 809
>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
Length = 572
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 7/199 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++E I R+ E G+ +N++S N +++ + R E+A +++ K PN T
Sbjct: 232 AGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQL-KSHITPNAHT 290
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +C A V+E+ QE+K G P V+ Y ++ Y + + Y +L EM
Sbjct: 291 FNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEME 350
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N S + +T I + + ++ V ++ G FYN L+ L G
Sbjct: 351 ANG-SPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRL 409
Query: 181 ERAARVLDEATKRGLFPEL 199
E A RV R PEL
Sbjct: 410 EEAERVF-----RVEMPEL 423
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M +G NS ++ ++ + FEEA++ M++ C P+ ++
Sbjct: 345 MLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLA 404
Query: 70 FAGLVDESKEQFQ-EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
AG ++E++ F+ E+ G+ + Y ++A+Y + D A LL EM ++ + N
Sbjct: 405 RAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCN 462
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-VEMEKVRCDPNERTLE 62
++E + +RM SG +S +N +I + GR EEA + + VEM ++ N T
Sbjct: 374 FEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYN 433
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++++YC D++ E +E++SS + P V Y LL K + LL EM T
Sbjct: 434 SMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVT 493
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 1/208 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E ++ M E G+ N ++N +++AFR+ G+ + A+ + EM++ P+ T
Sbjct: 148 AGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVT 207
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L C AG V +++ F ++ G P Y L+ KS R ++A+ + EM
Sbjct: 208 YNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREM- 266
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+R + V + N V + +++ +G+ +N +++AL
Sbjct: 267 VDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKP 326
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWS 208
+ A V + G P+L +N L+ S
Sbjct: 327 DAAREVFARMVESGCKPDLISYNILIDS 354
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 5/219 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + + ++ + G + ++N +I F + G+ + A++ + EM+ +P+E T
Sbjct: 79 GEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTY 138
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ AG V E++ F + G+ P++ Y +L+ + K + D A GL EM
Sbjct: 139 GFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMK- 197
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R VT ++ +F K+ +G Y+ L+ L G E
Sbjct: 198 RRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVE 257
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV----DVHRMWE 216
A +V E RG+ +L +N L+ ++ ++ R+W+
Sbjct: 258 EAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWK 296
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 3/183 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+F +I+ G FE A Y ++ + C + ++ + +G +D + E F+E+
Sbjct: 67 AFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREM 126
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIHQVTGQMIKGEFDDES 143
K G P Y L+ K+ R +A D M ++ NI T ++ F
Sbjct: 127 KIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIP--TYNLLMDAFRKVG 184
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
M +F ++ G+ + YN LL+AL G A ++ + T G P+ + ++
Sbjct: 185 QLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYS 244
Query: 204 KLV 206
LV
Sbjct: 245 TLV 247
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 86/206 (41%), Gaps = 11/206 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M + GVA + ++N+++ + G + K EM + P+ +
Sbjct: 254 GRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSF 313
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ A D ++E F + SG P ++ Y +L+ YA+ A +L+EM
Sbjct: 314 NTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVE 373
Query: 122 NRISNIHQVTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ +I G+ D+ V +++ G + YN L++ L
Sbjct: 374 AGFIPETKTYNSLIHWLATDGQVDEAFA------VLEEMETAGCRPDVVTYNRLMDMLGK 427
Query: 177 LGLRERAARVLDEATKRGLFPELFRH 202
G +RAAR+ + +G+ P+ +
Sbjct: 428 RGENQRAARLFQQMKDKGVEPDTLSY 453
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L M E+G + ++N++I G+ +EA EME C P+ T ++
Sbjct: 363 QARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLM 422
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ G + FQ++K G+ P + Y + + A +R D+A L +M
Sbjct: 423 DMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDM 476
>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
Length = 397
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 4/209 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G L++ + ++S M E G+ N+ +NA ++ + E+A++ Y M++ RC N T
Sbjct: 26 GSLHR-AEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTET 84
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+++VY A S + F E+KS G P++ Y L+ +A+ + A + +EM
Sbjct: 85 FTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ 144
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+++ M + Q +F + G YN L++A GL
Sbjct: 145 QAGHEPDVYAYNALM--EAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGL 202
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWS 208
E A V +E +RG+ P + H L+ +
Sbjct: 203 HEDAEAVFEELKQRGMSPTMKSHMLLLAA 231
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 71/124 (57%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + + M ++G + ++NA++EA+ + G + A + + M+ + C+P+ +
Sbjct: 131 GLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASY 190
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y AGL ++++ F+E+K G+ P++ + +LLA +A+S ++ ++H
Sbjct: 191 NILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHK 250
Query: 122 NRIS 125
+ ++
Sbjct: 251 SGLT 254
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL + I S M G + S+N +++A+ + G E+A + E+++ P ++
Sbjct: 165 AGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKS 224
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L+ + +G +E ++ SG+ P +L YA++ R DD L M
Sbjct: 225 HMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAM 283
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 1/169 (0%)
Query: 51 KVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110
+ +C P E T +L YC AG + ++ E++ GI P+ Y L K+ +
Sbjct: 5 EAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTE 64
Query: 111 DAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
A + M R + MI + VF+++ G + Y AL
Sbjct: 65 KAVEVYQRMKRERCRANTETFTLMIN-VYGKAKQPMSSMKVFNEMKSIGCKPNICTYTAL 123
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
+ A GL E+A V +E + G P+++ +N L+ + + +G +
Sbjct: 124 VNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGAS 172
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G C+ +++++ +SG+ ++ + NA++ A+ + GR ++ + + ME+ R D + T
Sbjct: 236 GNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMER-RGDADVGTY 294
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ Y AG V + F + + G+ V+ + + YA+ + G+++EM
Sbjct: 295 NVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEM 352
>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
[Vitis vinifera]
Length = 990
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 63/107 (58%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G + + S+N +I +F + GR EEA+K + E+E C P+ + ++++ G
Sbjct: 309 KMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNG 368
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+DE+ +F+E++ G+ P V+ Y L+ + K+++ + A L DEM
Sbjct: 369 DIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEM 415
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 92/198 (46%), Gaps = 1/198 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +LS++ E ++ ++ +N V+ A + + + Y +M++ P+ +
Sbjct: 262 AGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFS 321
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S + AG V+E+ + F+E+++S P ++ + L+ K+ D+A+ EM
Sbjct: 322 YNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR 381
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+S VT + F +M +FD++ EG + YN LL+ L G
Sbjct: 382 EEGLSP-DVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRT 440
Query: 181 ERAARVLDEATKRGLFPE 198
A + + ++GL P+
Sbjct: 441 AEAVDLYAKLKQQGLTPD 458
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/189 (19%), Positives = 84/189 (44%), Gaps = 9/189 (4%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
+ D++ +++E+ G+ EA+ ++ + R + VLS + + +
Sbjct: 248 DRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLY 307
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR----ISNIHQVTGQMIKG 137
+++K G P + Y +L++ + ++ R ++A + +E+ + I + + + + K
Sbjct: 308 EKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKN 367
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
DE++ + F ++ EG + Y+ L+E E A R+ DE G P
Sbjct: 368 GDIDEAHMR-----FKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSP 422
Query: 198 ELFRHNKLV 206
+ +N L+
Sbjct: 423 NIVTYNILL 431
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +++A + + ++ + +M++ C+P+E T ++ + G DES FQE+
Sbjct: 79 AYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEM 138
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
G P+++ Y ++ A + D L +M N
Sbjct: 139 TEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVEN 176
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E M E G++ + +++ +IE F + + E A + + EM C PN T
Sbjct: 368 GDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTY 427
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99
+L +G E+ + + ++K G+ P + Y +L
Sbjct: 428 NILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 465
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 10/210 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M+E G N ++N +I+A ++ I + +M + C PN T
Sbjct: 126 GKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTF 185
Query: 62 EAVLSVYCFAGLV---DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+L+V G + DE E + + I Y L+ +K +A+ L
Sbjct: 186 SVILNVLVAEGQLGRLDEVVEVSNKFMNKSI------YAYLVRTLSKLGHASEAHRLFCN 239
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M + M++ D + ++ + K++ + YN +L AL L
Sbjct: 240 MWSFHDEGDRDAYMSMLESLCDAGKTTEALD-LLSKIHEKRISTDTVMYNTVLSALGKLK 298
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWS 208
+ ++ + G P++F +N L+ S
Sbjct: 299 KTSDLHDLYEKMKQDGPSPDIFSYNILISS 328
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 1/191 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +L M + + N +++A+++AF + G+ EA + + EM ++ DP+ T
Sbjct: 239 GRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTY 298
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ C +DE+ + F + S G P V+ Y L+ + K+ R +D L +M
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQ 358
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N +I+G F + E+ F +++ G + YN LL L GL E
Sbjct: 359 RGLVNNTVTYNTLIQGFFQVGDVDKAQEF-FSQMDSFGVSPDIWTYNILLGGLCDNGLLE 417
Query: 182 RAARVLDEATK 192
+A + ++ K
Sbjct: 418 KALVIFEDMQK 428
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 95/199 (47%), Gaps = 3/199 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L +M + G + + +++ F + R +A+ +M ++ P+ A++
Sbjct: 141 SVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSL 200
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C V+++ + F+EI GI P+V+ Y L+ S RW+DA LL +M +I+ +
Sbjct: 201 CKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITP-N 259
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVL 187
+T + F + +F+++ + Y++L+ L CL R + A ++
Sbjct: 260 VITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGL-CLHDRIDEANQMF 318
Query: 188 DEATKRGLFPELFRHNKLV 206
D +G FP++ +N L+
Sbjct: 319 DLMVSKGCFPDVVSYNTLI 337
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 59/107 (55%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +MS+ G+ N+ ++N +I+ F Q G ++A + + +M+ P+ T +L C
Sbjct: 352 LFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLC 411
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
GL++++ F++++ S + ++ Y ++ K+ + +DA+GL
Sbjct: 412 DNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLF 458
>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04130, mitochondrial; Flags: Precursor
gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 7/199 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++E I R+ E G+ +N++S N +++ + R E+A +++ K PN T
Sbjct: 168 AGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQL-KSHITPNAHT 226
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +C A V+E+ QE+K G P V+ Y ++ Y + + Y +L EM
Sbjct: 227 FNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEME 286
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N S + +T I + + ++ V ++ G FYN L+ L G
Sbjct: 287 ANG-SPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRL 345
Query: 181 ERAARVLDEATKRGLFPEL 199
E A RV R PEL
Sbjct: 346 EEAERVF-----RVEMPEL 359
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M +G NS ++ ++ + FEEA++ M++ C P+ ++
Sbjct: 281 MLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLA 340
Query: 70 FAGLVDESKEQFQ-EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
AG ++E++ F+ E+ G+ + Y ++A+Y + D A LL EM ++ + N
Sbjct: 341 RAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCN 398
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-VEMEKVRCDPNERTLE 62
++E + +RM SG +S +N +I + GR EEA + + VEM ++ N T
Sbjct: 310 FEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYN 369
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++++YC D++ E +E++SS + P V Y LL K + LL EM T
Sbjct: 370 SMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVT 429
>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 607
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 9/220 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE +L M G+ + S+++VI+A +G R++EAI EM V PN +
Sbjct: 291 GGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPNAIS 350
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ + G E+K +E+ ++G+ V+ Y +A AK +W +A LL EM
Sbjct: 351 YNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALALLREMP 410
Query: 121 T----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
T + + KG W + + ++ G YN+ ++A
Sbjct: 411 TVGLHTTVFSYSSAIDACGKGNL-----WIKAKELLREMATVGLAPNEVCYNSAIDACGR 465
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E A +L E GL P++F ++ + + W+
Sbjct: 466 GDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQWK 505
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 96/207 (46%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE + +L M +GV + +N+ I A +G +++EA+ EM V +
Sbjct: 361 GGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFS 420
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ + L ++KE +E+ + G+ P+ +CY + + ++W++A LL EM
Sbjct: 421 YSSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMP 480
Query: 121 TNRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
T +S ++ + + D+ W+ V +++ G + YN+ ++A G
Sbjct: 481 TVGLSPDVFSYSSAIAACAKGDQ--WKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGR 538
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A +L E GL P + ++ +
Sbjct: 539 WKMAVALLGEMRAAGLTPNIISYSSAI 565
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 95/206 (46%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +K +L M V N +N+ I + + G++E A+ EM V P+ +
Sbjct: 116 GGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVIS 175
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +S G +E+ E F+++++SG+ P V+ Y +A A RW +A LL ++
Sbjct: 176 YSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIP 235
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T ++ + ++ + E W++ + ++ + YNA ++A G
Sbjct: 236 TVGLTP-NVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRW 294
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A +L E GL P++ ++ ++
Sbjct: 295 KEAIDLLREMPTVGLPPDVVSYSSVI 320
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 98/215 (45%), Gaps = 1/215 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE ++L ++ G+ N S+++VI A + G+++ A+ EM+ +R PN T
Sbjct: 221 GGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIIT 280
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A + G E+ + +E+ + G+ P V+ Y ++ +K +RW +A +L EM
Sbjct: 281 YNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMP 340
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T +S + ++ W+ + + ++ G + YN+ + A
Sbjct: 341 TVGLSP-NAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQW 399
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
+ A +L E GL +F ++ + + +W
Sbjct: 400 KEALALLREMPTVGLHTTVFSYSSAIDACGKGNLW 434
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 94/220 (42%), Gaps = 9/220 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++E + M SGVA + ++ + I A GGR++EA+ ++ V PN +
Sbjct: 186 GGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVIS 245
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+V++ G + + +E+K+ + P+++ Y + AK RW +A LL EM
Sbjct: 246 YSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMP 305
Query: 121 T----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
T + + V KG+ W+ + ++ G YN+ ++A
Sbjct: 306 TVGLPPDVVSYSSVIDACSKGD-----RWKEAIDILREMPTVGLSPNAISYNSAIDACAK 360
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
G + A +L E G+ + +N + + W+
Sbjct: 361 GGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWK 400
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +K L M G+A ++ S+ A I A +GGR++ A+ EM PN
Sbjct: 81 GGQWKMAVFFLMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVII 140
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ ++ AG + + +E+ + G+ P V+ Y ++ + RW++A L ++M
Sbjct: 141 YNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMR 200
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T+ ++ G I + W+ + K+ G + Y++++ A G
Sbjct: 201 TSGVAPDVITYGSAI-AACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQW 259
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A +L E L P + +N +
Sbjct: 260 KIALDLLREMKAMRLAPNIITYNAAI 285
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 96/216 (44%), Gaps = 1/216 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +++ +L M G A + +++AVI+A +GG+++ A+ +EM P+ R+
Sbjct: 46 GGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARS 105
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A ++ G + + +E+ + + P+V+ Y + AK+ +W+ A L+ EM
Sbjct: 106 YGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMA 165
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T ++ ++ W+ +F+ + G + Y + + A G
Sbjct: 166 TVGLAP-DVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRW 224
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ A +L + GL P + ++ ++ + W+
Sbjct: 225 KEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWK 260
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +KE A+L MS +G+A + +N+ I+A +GGR++ A+ EM PN +
Sbjct: 501 GDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIIS 560
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
+ + G E +E++ SG++P V+ Y L+ AK
Sbjct: 561 YSSAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHALMVTCAK 605
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/185 (19%), Positives = 71/185 (38%), Gaps = 1/185 (0%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
+ S+ I A +GG++E+A++ EM P+ AV+ G +
Sbjct: 32 DQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFL 91
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
E+ + GI P Y + A+ RW A LL EM ++ + I
Sbjct: 92 MEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAIN-SCAK 150
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
W++ + ++ G + Y++ + A G E A + ++ G+ P++
Sbjct: 151 AGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVIT 210
Query: 202 HNKLV 206
+ +
Sbjct: 211 YGSAI 215
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 35/159 (22%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G L+ + + +L M+ G+A N +N+ I+A +G ++EEA+ EM V P+ +
Sbjct: 431 GNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFS 490
Query: 61 LEAVLS--------------------------VYCFAGLVDESKEQ---------FQEIK 85
+ ++ + C+ +D + E++
Sbjct: 491 YSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMR 550
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
++G+ P+++ Y + + +W + LL+EM + +
Sbjct: 551 AAGLTPNIISYSSAIDACVRGGQWKEGIALLEEMRGSGV 589
>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Brachypodium distachyon]
Length = 1102
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 36/197 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + GV N S+ I Q GRFEEA K +ME C P+ T ++ + C
Sbjct: 238 LLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILC 297
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG V ++K+ F ++K+S P + Y LL D G
Sbjct: 298 DAGRVSDAKDVFWKMKASDQKPDRVTYITLL----------DKCG--------------- 332
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
D + + V +++ + +GY + Y A+++AL +G + A+ V D+
Sbjct: 333 -----------DNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQ 381
Query: 190 ATKRGLFPELFRHNKLV 206
++G+ P+ + +N L+
Sbjct: 382 MKQKGIEPQQYSYNSLI 398
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 2/209 (0%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
LY+ MSE G + ++ +++ + G+ E+A + EM C PN
Sbjct: 862 LYEAMDLYYKLMSE-GFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYN 920
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+L+ Y AG ++ E FQ + GI P + Y +L+ + R +D+ ++ T
Sbjct: 921 ILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQL-TE 979
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+T ++ + +F+ + G + YN+L+ L G
Sbjct: 980 LGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAE 1039
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDV 211
A ++ +E K G P +F +N L+ V
Sbjct: 1040 AGKMYEELLKNGWKPNVFTYNALIGGYSV 1068
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 83/190 (43%), Gaps = 1/190 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + + NAV+ + + GR A + + E++ + P+ T ++ A
Sbjct: 452 MKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASN 511
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
DE+ + F E+ + +P V+ L+ K+ R ++A+ + E+ +
Sbjct: 512 ADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNT 571
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ G E + V ++ +++N Y + YN +L+ L G A +L T +
Sbjct: 572 LLAG-LGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMK 630
Query: 194 GLFPELFRHN 203
G P+L +N
Sbjct: 631 GCMPDLSSYN 640
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 17/205 (8%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + M+ G N ++ I + + G +AIK Y M+ P+ AVL
Sbjct: 413 LFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLA 472
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR----IS 125
+G + +K F E+KS G+ P + Y M++ +K++ D+A + EM R +
Sbjct: 473 KSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVL 532
Query: 126 NIHQVTGQMIKGEFDDESNWQMV----EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ + + K +E+ W++ E D +C YN LL L G +
Sbjct: 533 AVNSLIDTLYKAGRGNEA-WKIFHELKEMNLDPTDCT--------YNTLLAGLGREGKVK 583
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+L+E P L +N ++
Sbjct: 584 EVMHLLEEMNSNSYPPNLITYNTVL 608
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 85/199 (42%), Gaps = 1/199 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + S M G + ++N +++A + R E+ +K EM + T ++S
Sbjct: 796 EGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISG 855
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ ++ E+ + + ++ S G P+ Y LL K + +DA L DEM
Sbjct: 856 LVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPN 915
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ ++ G + N + V +F + +G ++ Y L+ AL G +
Sbjct: 916 RAIYNILLNG-YRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYF 974
Query: 188 DEATKRGLFPELFRHNKLV 206
+ T+ GL P+L +N L+
Sbjct: 975 RQLTELGLEPDLITYNLLI 993
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+++E G+ + ++N +I + GR EEA+ + +MEK PN T +++ G
Sbjct: 976 QLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEG 1035
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ + ++E+ +G P+V Y L+ Y+ S D+A+ +M
Sbjct: 1036 KAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQM 1082
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +M + G+ S+N++I F + R A++ + M PN T
Sbjct: 370 GRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTY 429
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y +G ++ ++++ +KS GI+P V+ +L AKS R A + E+ +
Sbjct: 430 VLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKS 489
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + MIK SN VF ++ + N+L++ L+ G
Sbjct: 490 IGVCPDNITYTMMIKC-CSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGN 548
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++ E + L P +N L+
Sbjct: 549 EAWKIFHELKEMNLDPTDCTYNTLL 573
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 77/193 (39%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G N ++ AV++A Q GR +EA + +M++ +P + + +++S + A
Sbjct: 347 MKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADR 406
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ + E F + G P+ Y + + Y KS A + M + I V G
Sbjct: 407 LNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVP-DVVAGN 465
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ M + VF +L G Y +++ + A +V E +
Sbjct: 466 AVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIET 525
Query: 194 GLFPELFRHNKLV 206
P++ N L+
Sbjct: 526 RCVPDVLAVNSLI 538
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + S M E+ + + N++I+ + GR EA K + E++++ DP + T +L
Sbjct: 514 EAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLL 573
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ G V E +E+ S+ P+++ Y +L K+ + A G+L M
Sbjct: 574 AGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNM 627
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E ++ + M +SG+A N ++N++I + G+ EA K Y E+ K PN T
Sbjct: 1000 GRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTY 1059
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99
A++ Y +G D + + ++ G P+ Y L
Sbjct: 1060 NALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYMQL 1097
>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
Length = 2052
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ Q +L M E+G A + ++N +I F + G ++A+ +VEM C P+ T ++
Sbjct: 1858 EQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSI 1917
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH---- 120
+ +C AG V+E+ + F E+K+ GI P+ Y + K+ R DA+ L EM
Sbjct: 1918 VDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGL 1977
Query: 121 TNRISNIHQVTG--QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ IS + ++ ++ KG+ +Q++ + +K G+ + +N + EAL
Sbjct: 1978 VDAISYVALISTICKLGKGKL----GFQLLREMLEK----GFKPNLVTFNVVFEAL 2025
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 87/206 (42%), Gaps = 11/206 (5%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q +++ S N+ +++ ++ + + G +A+ M+K N + +L+
Sbjct: 1682 QMLIAESKPSSFQANAFTYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTH 1741
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G E+ + + ++ P + Y +L+ K R +DA GL++ M
Sbjct: 1742 LCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTD 1801
Query: 128 HQVTGQMI-------KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I G F E +++ E + DK G+ Y +++AL + +
Sbjct: 1802 IVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDK----GHTPTSVTYTVVIDALLRVKMD 1857
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E+A +VLD + G +L +N L+
Sbjct: 1858 EQAQKVLDLMHENGCAFDLVTYNMLI 1883
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 96/213 (45%), Gaps = 13/213 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ A+L M ++ V N+ +N ++ + G+ +EA+ M C P+ T
Sbjct: 1711 GETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTY 1770
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL-AVYAKSN---RWDDAYGLLD 117
+++ C G +++++ + +++ ++ Y L+ + K N R + A+ L +
Sbjct: 1771 NILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFE 1830
Query: 118 EM----HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
EM HT V +++ + D+++ + V D ++ G + YN L+
Sbjct: 1831 EMVDKGHTPTSVTYTVVIDALLRVKMDEQA-----QKVLDLMHENGCAFDLVTYNMLINR 1885
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G+ ++A + E RG P++ +N +V
Sbjct: 1886 FAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIV 1918
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ + + M G + ++N++++ F + G+ EEA K + EM+ PN RT
Sbjct: 1889 AGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRT 1948
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ AG + ++ E++ G++ ++ Y L++ K + + LL EM
Sbjct: 1949 YTSITDACLKAGRMQDAHAYLVEMRKEGLVDAI-SYVALISTICKLGKGKLGFQLLREM 2006
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 10/198 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + G S ++ VI+A + E+A K M + C + T +++ +
Sbjct: 1828 LFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFA 1887
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI----S 125
AG++D++ + F E+ + G +P V+ Y ++ + K+ + ++A L EM I
Sbjct: 1888 KAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGR 1947
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+T +K +++ +VE + EG + Y AL+ + LG + +
Sbjct: 1948 TYTSITDACLKAGRMQDAHAYLVE-----MRKEGLVDAIS-YVALISTICKLGKGKLGFQ 2001
Query: 186 VLDEATKRGLFPELFRHN 203
+L E ++G P L N
Sbjct: 2002 LLREMLEKGFKPNLVTFN 2019
>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
Length = 508
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 7/199 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++E I R+ E G+ +N++S N +++ + R E+A +++ K PN T
Sbjct: 168 AGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQL-KSHITPNAHT 226
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +C A V+E+ QE+K G P V+ Y ++ Y + + Y +L EM
Sbjct: 227 FNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEME 286
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N S + +T I + + ++ V ++ G FYN L+ L G
Sbjct: 287 ANG-SPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRL 345
Query: 181 ERAARVLDEATKRGLFPEL 199
E A RV R PEL
Sbjct: 346 EEAERVF-----RVEMPEL 359
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M +G NS ++ ++ + FEEA++ M++ C P+ ++
Sbjct: 281 MLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLA 340
Query: 70 FAGLVDESKEQFQ-EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
AG ++E++ F+ E+ G+ + Y ++A+Y + D A LL EM ++ + N
Sbjct: 341 RAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCN 398
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-VEMEKVRCDPNERTLE 62
++E + +RM SG +S +N +I + GR EEA + + VEM ++ N T
Sbjct: 310 FEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYN 369
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++++YC D++ E +E++SS + P V Y LL K + LL EM T
Sbjct: 370 SMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVT 429
>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16640, mitochondrial; Flags: Precursor
gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + ++S M++ + + +FNA+I+A + GR EA + Y EM + DP+ T
Sbjct: 235 GRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTY 294
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C +DE++E F + S G P V+ Y +L+ Y KS + + L EM
Sbjct: 295 SLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQ 354
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + VT ++ + + E +F ++ G + YN LL L G E
Sbjct: 355 RGVVR-NTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A +L + K G+ ++ +N ++
Sbjct: 414 KALVILADMQKNGMDADIVTYNIII 438
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + M G + +++ +I + + + E +K + EM + N T ++
Sbjct: 309 EAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILI 368
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
YC AG ++ ++E F+ + G+ P+++ Y +LL + + + A +L +M N +
Sbjct: 369 QGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMD 428
Query: 126 ------NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
NI + G GE D W ++ LNC+G + Y ++ L+ GL
Sbjct: 429 ADIVTYNI-IIRGMCKAGEVADA--WD----IYCSLNCQGLMPDIWTYTTMMLGLYKKGL 481
Query: 180 RERAARVLDEATKRGLFPE 198
R A + + + G+ P
Sbjct: 482 RREADALFRKMKEDGILPN 500
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 36/194 (18%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M G+ N + N ++ F + + A+ +M K+ +P+ T ++L+ +C
Sbjct: 106 QMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGD 165
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
V ++ F ++ G P+V+ Y ++ KS + D+A LL+ M
Sbjct: 166 RVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEK----------- 214
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+G G + YN+L+ L G A R++ TK
Sbjct: 215 -------------------------DGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTK 249
Query: 193 RGLFPELFRHNKLV 206
R ++P++F N L+
Sbjct: 250 REIYPDVFTFNALI 263
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ L +M + G + +F +++ F +G R +A+ + +M + PN ++
Sbjct: 137 SFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGL 196
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
C + VD + + ++ GI P V+ Y L++ S RW DA ++ M I
Sbjct: 197 CKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREI 252
>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 504
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 93/196 (47%), Gaps = 9/196 (4%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
+ + M E+GV + S+N +I+AF + G +A Y M++ P ++ +LS
Sbjct: 286 AKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLS 345
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN---- 122
Y AG V E++ +EI++SG+ P + LL+ Y S R D+ LL+ M ++
Sbjct: 346 SYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKP 405
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
IS ++ + +G + +++ E VF+ L +G + + +L+ A L +
Sbjct: 406 DISTLNTLINAYAQGGYIEKA-----EEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRK 460
Query: 183 AARVLDEATKRGLFPE 198
+ + K G P+
Sbjct: 461 CVSIFQKMVKAGCIPD 476
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 14/214 (6%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE----- 58
++E + M + SFN ++ A+ +G + E+A K + EM++ P
Sbjct: 99 WREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAEKLFHEMKESNYSPGTVEWMI 158
Query: 59 ----RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG 114
T L V +G + ++++ F++++ GILP+V + +++ +Y K+ D A
Sbjct: 159 FSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADD 218
Query: 115 LLDEMHTNR-ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
L M N++ T M E N E +F +L G+ + YNALLEA
Sbjct: 219 LFRSMRKALCPPNLYTYTALM--NAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEA 276
Query: 174 LWCLGLRERAAR-VLDEATKRGLFPELFRHNKLV 206
+ G A+ V + G+ P+ +N L+
Sbjct: 277 -YSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILI 309
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 85/206 (41%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + M + G+ ++F +I + + ++A + M K C PN T
Sbjct: 175 SGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYT 234
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+++ + G ++E F E++S G +P V Y LL Y++ A + M
Sbjct: 235 YTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMV 294
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ QV+ ++ F + V+D + G+ M+ + LL + G
Sbjct: 295 EAGV-RPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKV 353
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A R++ E G+ P+ F N L+
Sbjct: 354 TEAERLVREIENSGVKPDTFMFNSLL 379
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 57/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + ++ + SGV ++ FN+++ A+ GR +E M P+ T
Sbjct: 350 AGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDIST 409
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
L +++ Y G +++++E F ++S G+ P VM + L+ YA+ + + +M
Sbjct: 410 LNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFRKCVSIFQKM 468
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/200 (18%), Positives = 90/200 (45%), Gaps = 1/200 (0%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
+ I + + G + ++NA++EA+ +G A + + M + P++ + ++
Sbjct: 251 AEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILID 310
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+ AGL +++ + +K +G P++ + +LL+ YAK+ + +A L+ E+ + +
Sbjct: 311 AFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKP 370
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ ++ + + +E + + + + N L+ A G E+A V
Sbjct: 371 DTFMFNSLLSA-YGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEV 429
Query: 187 LDEATKRGLFPELFRHNKLV 206
+ +GL P++ L+
Sbjct: 430 FNSLESKGLTPDVMSWTSLM 449
>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
Length = 669
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 92/186 (49%), Gaps = 1/186 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM G+ + ++N+VI+ + + GR EA++ Y +++ V + T A+ +VY AG
Sbjct: 203 RMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAG 262
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ QE++ SG P+ + L+ +K+ + + A + +EM T+ +S VT
Sbjct: 263 DYQSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPT-PVTL 321
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ + + V++ L EG+ + YN+L++A G E+A +L E +
Sbjct: 322 SILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKR 381
Query: 193 RGLFPE 198
G P+
Sbjct: 382 AGCNPD 387
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/254 (18%), Positives = 100/254 (39%), Gaps = 39/254 (15%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N++++A +GGR E+A EM++ C+P+ T ++ Y G+VD ++ F ++
Sbjct: 356 YNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVV 415
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE-MHTNRISNIHQVTGQMIK----GEFD 140
+ P + +++ + + A + DE M + S +V+G ++ + D
Sbjct: 416 ALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSGMLLSCMAMAKSD 475
Query: 141 DESNWQMVEYVFDKLNCEGYGL--------------------------------GMRFYN 168
DE + DK N + L N
Sbjct: 476 DER--LAILDCLDKFNAPLHELMSAIVRKEEPRSRDEVAEMVEKFISDYPETDSRKPLCN 533
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLN 228
L++ +G++ A ++ G + L + +W +++ + A AI W++
Sbjct: 534 CLIDICSSVGMKHAAHKIFAMGVAVGAYDGLQTNLPSLWRLNLRTLSMPAAECAIEAWVS 593
Query: 229 KMYEMFMMGEDLPQ 242
+ G++LP+
Sbjct: 594 SLKAAVREGDELPE 607
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E L+ M G N + N ++ + GR+ +A K +M + C P+ T
Sbjct: 300 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 359
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C GL+ + + +++ G P+ + Y LL + K + D A LD M
Sbjct: 360 NILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM-V 418
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+R VT + + + + ++L+ +G + YN +++ L +G E
Sbjct: 419 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTE 478
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA ++LDE ++GL P++ ++ LV
Sbjct: 479 RAIKLLDEMRRKGLKPDIITYSSLV 503
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 84/197 (42%), Gaps = 4/197 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM+ VA + ++N ++ G+ ++A++ + C P+ T ++ C
Sbjct: 206 VLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATC 262
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
V ++ + E+++ G P V+ Y +L+ K R D+A L+ M + +
Sbjct: 263 KESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQP-NV 321
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T +I W E + + +G + +N L+ L GL RA +L++
Sbjct: 322 ITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEK 381
Query: 190 ATKRGLFPELFRHNKLV 206
G P +N L+
Sbjct: 382 MPMHGCTPNSLSYNPLL 398
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 1/208 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ +L R + + ++ +IEA + +A+K EM P+ T
Sbjct: 230 GKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTY 289
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G +DE+ + + S G P+V+ + ++L + RW DA LL +M
Sbjct: 290 NVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLR 349
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
S VT ++ + + +K+ G YN LL +
Sbjct: 350 KGCSP-SVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMD 408
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
RA LD RG +P++ +N L+ ++
Sbjct: 409 RAIEYLDIMVSRGCYPDIVTYNTLLTAL 436
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL+++S G + ++N VI+ + G+ E AIK EM + P+ T +++S
Sbjct: 448 ILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLS 507
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VDE+ + F +++ GI P+ + Y ++ KS + D A L M + R
Sbjct: 508 REGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEA 567
Query: 130 VTGQMIKG 137
+I+G
Sbjct: 568 TYTILIEG 575
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 8/177 (4%)
Query: 35 QGGRFEEAIKAYVEMEKVRCD-PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV 93
+ G E+ K ++E R D P+ +++ +C G ++ + ++ SG +P V
Sbjct: 126 RNGELEDGFK-FLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDV 184
Query: 94 MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD 153
+ Y +L++ Y KS D+A +LD M N ++ VT I D + V D
Sbjct: 185 ITYNVLISGYCKSGEIDNALQVLDRM--NVAPDV--VTYNTILRTLCDSGKLKQAMEVLD 240
Query: 154 K-LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ L E Y + Y L+EA +A ++LDE +G P++ +N L+ +
Sbjct: 241 RQLQKECYP-DVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGI 296
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 79/214 (36%), Gaps = 39/214 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ ++ + +SG + ++N +I + + G + A++ ++++ P+ T
Sbjct: 163 GKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQV---LDRMNVAPDVVTY 219
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L C +G + ++ E P V+ Y +L+ K + A LLDEM
Sbjct: 220 NTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMR- 278
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N+ S VT YN L+ + G +
Sbjct: 279 NKGSKPDVVT-----------------------------------YNVLINGICKEGRLD 303
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
A + L+ G P + HN ++ S+ W
Sbjct: 304 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRW 337
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 52/110 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M G+ + ++++++ + G+ +EAIK + ++E + PN T +++ C
Sbjct: 483 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 542
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ D + + + S P+ Y +L+ A +A LL+E+
Sbjct: 543 KSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 592
>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
Length = 833
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 8/201 (3%)
Query: 10 ILSRMSESGVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ +MS+ R NS +++ +I + GR EEA + EM + C P+ RT ++
Sbjct: 185 VFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAK 244
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G+ D++ + E+ + +P+V Y +L+ + + ++A G+ +M + +
Sbjct: 245 CDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGI 304
Query: 129 QVTGQMIKGEFDDE---SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+I G + S +Q++ V +K NC+ +R YN L+E L + +A
Sbjct: 305 ITFNALINGYCKEGWVVSAFQLLS-VMEKGNCKP---NIRTYNELMEGLCRVSKSYKAFL 360
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+L GL P+ +N LV
Sbjct: 361 LLRRVVDNGLLPDRVTYNILV 381
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 61/132 (46%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A+L +M + G+ + + +IE + G ++K M++ C PN T ++
Sbjct: 497 EANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIII 556
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ C G V+E++ + S G+ P+ Y +L+ + K+ R D A+ ++ M N
Sbjct: 557 NGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQ 616
Query: 126 NIHQVTGQMIKG 137
+ ++ G
Sbjct: 617 PNSHIYSALLSG 628
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 34/216 (15%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G ++ ++ +I+A G ++A+K EM C PN T ++ C G
Sbjct: 225 MVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGK 284
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----------- 122
++E+ F+++ G+ P ++ + L+ Y K A+ LL M
Sbjct: 285 IEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNE 344
Query: 123 ------RISNIHQ-----------------VTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159
R+S ++ VT ++ F E M +F+ +N G
Sbjct: 345 LMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAG 404
Query: 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ AL++ L LG E+A +L K+G+
Sbjct: 405 LEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGI 440
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 24/201 (11%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM ++G + N ++ +I GR EEA M PN T ++ +
Sbjct: 536 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 595
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +D + + + +G P+ Y LL+ + SN A L S+
Sbjct: 596 KAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARAL---------SSTGD 646
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR------------FYNALLEALWCL 177
+ + + E +D N + +VF ++ + + L +R YN L+ L
Sbjct: 647 LDARSLSSEEND--NNCLSSHVFRLMDVD-HALKIRDEIKKCGVPTEDLYNFLVVGLCKE 703
Query: 178 GLRERAARVLDEATKRGLFPE 198
G A ++ + K GLFP+
Sbjct: 704 GRIIEADQLTQDMVKHGLFPD 724
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 88/240 (36%), Gaps = 36/240 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT- 60
G +E + +M + G+ +FNA+I + + G A + MEK C PN RT
Sbjct: 283 GKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTY 342
Query: 61 ---LEAVLSV-------------------------------YCFAGLVDESKEQFQEIKS 86
+E + V +C G ++ + F + S
Sbjct: 343 NELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNS 402
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
+G+ P + L+ K R + A G+L M IS + +VT + +
Sbjct: 403 AGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGIS-LDEVTFTALIDGHCKIGKAK 461
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V ++F+ + +N L+AL A +L + K GL P + H L+
Sbjct: 462 DVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILI 521
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + IL MS GV+ N ++ +++A + GR + A + M K C PN
Sbjct: 563 GRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 622
Query: 62 EAVLS 66
A+LS
Sbjct: 623 SALLS 627
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 83/197 (42%), Gaps = 3/197 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ IL M + G++ + +F A+I+ + G+ ++ + M + RC T
Sbjct: 423 GRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTF 482
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
L ++E+ ++ G++PSV+ + +L+ + ++ + +L+ M
Sbjct: 483 NCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQ 542
Query: 122 NRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
S N++ T +I + + E + ++ G Y L++A G
Sbjct: 543 AGCSPNVYTYT--IIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 600
Query: 181 ERAARVLDEATKRGLFP 197
+RA +++ K G P
Sbjct: 601 DRAFQIVSTMVKNGCQP 617
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 102/211 (48%), Gaps = 9/211 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + AI RM ++GV + ++NAV+ A +GG +E++ K EM+ RC PNE T
Sbjct: 515 GFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTY 574
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLLD 117
++L Y V+ +EI S I P + L+ VY+KS+ + L +
Sbjct: 575 CSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELRE 634
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ + I+ ++ + + ++N +++ ++ D G+ + YN+L+
Sbjct: 635 QGFSPDITTLNAMVSIYGRRRMVSKTN-EILNFIKD----SGFTPSLTTYNSLMYMYSRT 689
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWS 208
E++ +L E +G+ P++ N ++++
Sbjct: 690 EHFEKSEDILREIIAKGMKPDIISFNTVIFA 720
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY+E + M +G + + ++NA+++ + + R EA++ EME P+ T
Sbjct: 304 GSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVT 363
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++S Y GL+DE+ E ++ GI P V Y LL+ + K+ + D A + +EM
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMR 423
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN-CEGYGLGMRFYNALLEALWCLGL 179
+IK + N+ + VF+++ CE + +N LL G+
Sbjct: 424 VAGCQPNICTFNALIKMH-GNRGNFVEMMKVFEEIKICECVP-DIVTWNTLLAVFGQNGM 481
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ V E + G PE N L+
Sbjct: 482 DSEVSGVFKEMKRAGFVPERDTFNTLI 508
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 3/173 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + ++ M SGVA + ++N +I + R+G +EEA + + EM+ P++ T
Sbjct: 269 GMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVT 328
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L VY + E+ E +E+++SG PS++ Y L++ YA+ D+A L +M
Sbjct: 329 YNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMV 388
Query: 121 TNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
I ++ T + E + ++ M VF+++ G + +NAL++
Sbjct: 389 KKGIKPDVFTYTTLLSGFEKTGKDDYAM--KVFEEMRVAGCQPNICTFNALIK 439
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 96/206 (46%), Gaps = 16/206 (7%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L + GV + ++ ++I A+ GR+ EA+ + ++E+ C P T +L+VY
Sbjct: 206 SLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVY 265
Query: 69 C--------FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AGLVD +KSSG+ P + Y L++ + + +++A + +EM
Sbjct: 266 GKMGMPWSKIAGLVD-------SMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMK 318
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
S +VT + + + V ++ G+ + YN+L+ A GL
Sbjct: 319 AAGFSP-DKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLL 377
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A + + K+G+ P++F + L+
Sbjct: 378 DEAMELKSQMVKKGIKPDVFTYTTLL 403
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 1/207 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ E + M +G D+FN +I A+ + G F++A+ Y M P+ T
Sbjct: 479 NGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLST 538
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AVL+ GL ++S++ E+K P+ + YC LL YA + L +E++
Sbjct: 539 YNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIY 598
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ I V + + + E F +L +G+ + NA++ +
Sbjct: 599 SGIIEP-QAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMV 657
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVW 207
+ +L+ G P L +N L++
Sbjct: 658 SKTNEILNFIKDSGFTPSLTTYNSLMY 684
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M +G N +FNA+I+ G F E +K + E++ C P+ T +L+V+
Sbjct: 418 VFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFG 477
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL----LDEMHTNRIS 125
G+ E F+E+K +G +P + L++ Y++ +D A + LD T +S
Sbjct: 478 QNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLS 537
Query: 126 NIHQVTGQMIKG 137
+ V + +G
Sbjct: 538 TYNAVLAALARG 549
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N ++ F Q G E + EM++ P T ++S Y G D++ ++ +
Sbjct: 468 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRM 527
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+G+ P + Y +LA A+ W+ + +L EM R
Sbjct: 528 LDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGR 566
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 57/120 (47%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ + IL+ + +SG + ++N+++ + + FE++ E+ P+ +
Sbjct: 656 MVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFN 715
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ YC G + E+ F E+K G+ P V+ Y +A YA + + +A ++ M N
Sbjct: 716 TVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKN 775
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ + IL + G+ + SFN VI A+ + GR +EA + + EM+ P+ T
Sbjct: 692 FEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNT 751
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ Y + E+ + + + + P+ Y L+ + K NR D+A
Sbjct: 752 FIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANSF-------- 803
Query: 124 ISNIHQVTGQMIKGE 138
ISN+ + + K E
Sbjct: 804 ISNLRNLDPSVTKDE 818
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE I + M + G+A + ++N I ++ F EAI M K C PN+ T
Sbjct: 724 NGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNT 783
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV 93
+++ +C DE+ +++ + PSV
Sbjct: 784 YNSLIDWFCKLNRRDEANSFISNLRN--LDPSV 814
>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 8/203 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M + G +S ++ +I + GR +EA K + EM + C P T ++++ C
Sbjct: 179 IFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLC 238
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ VDE+ +E+K GI P+V Y L+ K R A L EM R +
Sbjct: 239 GSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELF-EMMMARGCRPNM 297
Query: 130 VT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT +I G ++ + VE + D++N +G Y ++ + AA LD
Sbjct: 298 VTYTTLITGLCKEQKIQEAVE-LLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLD 356
Query: 189 EATKRGLFPELFRHNKLVWSVDV 211
E G+ P N+L W++ V
Sbjct: 357 EMILGGITP-----NRLTWNIHV 374
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 2/194 (1%)
Query: 14 MSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
M E G+ S N +I+A R G + +K + EM K CDP+ T ++S C G
Sbjct: 147 MREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFG 206
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+DE+K+ F E+ P+V+ Y L+ S D+A ++EM I
Sbjct: 207 RIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYS 266
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ G D + Q +E +F+ + G M Y L+ L + A +LD
Sbjct: 267 SLMDGLCKDGRSLQAME-LFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNL 325
Query: 193 RGLFPELFRHNKLV 206
+GL P+ + K++
Sbjct: 326 QGLKPDAGLYGKVI 339
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 61/136 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + + M E A ++ ++I +EA++ EM+ +PN T
Sbjct: 206 GRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTY 265
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G ++ E F+ + + G P+++ Y L+ K + +A LLD M+
Sbjct: 266 SSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNL 325
Query: 122 NRISNIHQVTGQMIKG 137
+ + G++I G
Sbjct: 326 QGLKPDAGLYGKVISG 341
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 105/247 (42%), Gaps = 19/247 (7%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+K + I++RM + D ++ + + R ++++ + +M+ CDP+++
Sbjct: 67 FKAAEDIVARMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVT 126
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-YGLLDEMHTN 122
VL++ ++ + + ++ ++ G+ P+V +L+ +++ DA + EM
Sbjct: 127 VLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKR 186
Query: 123 RISNIHQVTGQMIKG--EFD--DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
G +I G F DE+ E V + +C + Y +L+ L
Sbjct: 187 GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMV--EKDCAPTVVT---YTSLINGLCGSK 241
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238
+ A R ++E +G+ P +F ++ L+ +G S+ +++EM M
Sbjct: 242 NVDEAMRYVEEMKGKGIEPNVFTYSSLM---------DGLCKDGRSLQAMELFEMMMARG 292
Query: 239 DLPQLAT 245
P + T
Sbjct: 293 CRPNMVT 299
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 102/211 (48%), Gaps = 9/211 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + AI RM ++GV + ++NAV+ A +GG +E++ K EM+ RC PNE T
Sbjct: 515 GFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTY 574
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLLD 117
++L Y V+ +EI S I P + L+ VY+KS+ + L +
Sbjct: 575 CSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELRE 634
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ + I+ ++ + + ++N +++ ++ D G+ + YN+L+
Sbjct: 635 QGFSPDITTLNAMVSIYGRRRMVSKTN-EILNFIKD----SGFTPSLTTYNSLMYMYSRT 689
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWS 208
E++ +L E +G+ P++ N ++++
Sbjct: 690 EHFEKSEDILREIIAKGMKPDIISFNTVIFA 720
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY+E + M +G + + ++NA+++ + + R EA++ EME P+ T
Sbjct: 304 GSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVT 363
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++S Y GL+DE+ E ++ GI P V Y LL+ + K+ + D A + +EM
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMR 423
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN-CEGYGLGMRFYNALLEALWCLGL 179
+IK + N+ + VF+++ CE + +N LL G+
Sbjct: 424 VAGCQPNICTFNALIKMH-GNRGNFVEMMKVFEEIKICECVP-DIVTWNTLLAVFGQNGM 481
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ V E + G PE N L+
Sbjct: 482 DSEVSGVFKEMKRAGFVPERDTFNTLI 508
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 3/173 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + ++ M SGVA + ++N +I + R+G +EEA + + EM+ P++ T
Sbjct: 269 GMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVT 328
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L VY + E+ E +E+++SG PS++ Y L++ YA+ D+A L +M
Sbjct: 329 YNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMV 388
Query: 121 TNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
I ++ T + E + ++ M VF+++ G + +NAL++
Sbjct: 389 KKGIKPDVFTYTTLLSGFEKTGKDDYAM--KVFEEMRVAGCQPNICTFNALIK 439
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 96/206 (46%), Gaps = 16/206 (7%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L + GV + ++ ++I A+ GR+ EA+ + ++E+ C P T +L+VY
Sbjct: 206 SLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVY 265
Query: 69 C--------FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AGLVD +KSSG+ P + Y L++ + + +++A + +EM
Sbjct: 266 GKMGMPWSKIAGLVD-------SMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMK 318
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
S +VT + + + V ++ G+ + YN+L+ A GL
Sbjct: 319 AAGFSP-DKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLL 377
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A + + K+G+ P++F + L+
Sbjct: 378 DEAMELKSQMVKKGIKPDVFTYTTLL 403
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 1/207 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ E + M +G D+FN +I A+ + G F++A+ Y M P+ T
Sbjct: 479 NGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLST 538
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AVL+ GL ++S++ E+K P+ + YC LL YA + L +E++
Sbjct: 539 YNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIY 598
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ I V + + + E F +L +G+ + NA++ +
Sbjct: 599 SGIIEP-QAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMV 657
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVW 207
+ +L+ G P L +N L++
Sbjct: 658 SKTNEILNFIKDSGFTPSLTTYNSLMY 684
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M +G N +FNA+I+ G F E +K + E++ C P+ T +L+V+
Sbjct: 418 VFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFG 477
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL----LDEMHTNRIS 125
G+ E F+E+K +G +P + L++ Y++ +D A + LD T +S
Sbjct: 478 QNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLS 537
Query: 126 NIHQVTGQMIKG 137
+ V + +G
Sbjct: 538 TYNAVLAALARG 549
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N ++ F Q G E + EM++ P T ++S Y G D++ ++ +
Sbjct: 468 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRM 527
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+G+ P + Y +LA A+ W+ + +L EM R
Sbjct: 528 LDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGR 566
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ + IL + G+ + SFN VI A+ + GR +EA + + EM+ P+ T
Sbjct: 692 FEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNT 751
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ Y + E+ + + + +G P+ Y L+ + K NR D+A ++
Sbjct: 752 FIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEA--------SSF 803
Query: 124 ISNIHQVTGQMIKGE 138
ISN+ + + K E
Sbjct: 804 ISNLRNLDPSVTKDE 818
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 57/120 (47%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ + IL+ + +SG + ++N+++ + + FE++ E+ P+ +
Sbjct: 656 MVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFN 715
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ YC G + E+ F E+K G+ P V+ Y +A YA + + +A ++ M N
Sbjct: 716 TVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKN 775
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE I + M + G+A + ++N I ++ F EAI M K C PN+ T
Sbjct: 724 NGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNT 783
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV 93
+++ +C DE+ +++ + PSV
Sbjct: 784 YNSLIDWFCKLNRRDEASSFISNLRN--LDPSV 814
>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
Length = 461
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 9/211 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++GV N ++N+++ + G+ EAI M +P+ T ++ C
Sbjct: 249 VLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLC 308
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
E+++ F + G+ P + YC LL YA + + LLD M N I H
Sbjct: 309 KNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHH 368
Query: 130 VTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V +I K E DE+ VF K+ +G Y +++ L LG A
Sbjct: 369 VFNILICAYAKQEKVDEAML-----VFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVL 423
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
L + GL P++ + L+ WE
Sbjct: 424 TLKQMINEGLTPDIIVYTPLIHGFCTCDKWE 454
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 9/202 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNERTLEAVLSV 67
+L RM++ G N S +++ R +EA++ M + C P+ V++
Sbjct: 142 VLCRMTQLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVING 201
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ G D++ + E+ GILP V+ Y ++A K+ D A +L+ M N +
Sbjct: 202 FFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPN 261
Query: 128 HQVTGQMIKGEFDDESNWQMVEYV-FDKLNC-EGYGLGMRFYNALLEALWCLGLRERAAR 185
+ ++ G S+ Q+ E + F K+ C +G + N L++ L C R AR
Sbjct: 262 CRTYNSIVHGYC---SSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYL-CKNRRCTEAR 317
Query: 186 -VLDEATKRGLFPELFRHNKLV 206
+ + TK GL P++ + L+
Sbjct: 318 KIFNSMTKCGLKPDITTYCTLL 339
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M +G+ N FN +I A+ + + +EA+ + +M + PN
Sbjct: 346 GALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNY 405
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
V+ V C G V ++ +++ + G+ P ++ Y L+ + ++W+ A L+
Sbjct: 406 RTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLIHGFCTCDKWEKAEELI 460
>gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana]
Length = 702
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 113/268 (42%), Gaps = 33/268 (12%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSV 67
AI M E G++ +N ++ G +EA + + +M+ CDP+ T ++++V
Sbjct: 371 AIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITV 430
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
Y +G V E++ +++ +G P++ ++ Y K+ + DD D++ I+
Sbjct: 431 YACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPD 490
Query: 128 HQVTGQMIKGEFDDESN----------------WQMVEYVFDKLNCE------------- 158
+ G ++ S Q+V+ + ++ NCE
Sbjct: 491 DRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELID 550
Query: 159 --GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
G + + N L++ L ERA +L + ++ L + WS+ + +
Sbjct: 551 SIGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSL 610
Query: 217 GGAYTAISVWLNKMYEMFM-MGEDLPQL 243
G A TA+ VW+N + E + GE+ P L
Sbjct: 611 GAALTALHVWMNDLSEAALESGEEFPPL 638
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 87/202 (43%), Gaps = 1/202 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ + + M E G+ ++ +F +I RQ G + A++ + +M C+P+ T+ A+
Sbjct: 192 EKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAM 251
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ Y AG VD + + ++ + + L+ +Y S +D + +EM +
Sbjct: 252 IDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGV 311
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ ++I + WQ + ++ L G+ Y AL+ A + A
Sbjct: 312 KPNLVIYNRLIDSMGRAKRPWQ-AKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDAL 370
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ E ++GL + +N L+
Sbjct: 371 AIYREMKEKGLSLTVILYNTLL 392
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y C I M GV N +N +I++ + R +A Y ++ PN T
Sbjct: 293 SGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWST 352
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ Y A D++ ++E+K G+ +V+ Y LL++ A D+A+ + +M
Sbjct: 353 YAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDM 411
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 3/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L ++E G + N + +I+ + G E+A + EM K+ NERT +++
Sbjct: 185 LLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLF 244
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIH 128
G+ + E +++++ G+ P++ Y ++ K R DA+ + DEM +S NI
Sbjct: 245 KNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNI- 303
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT + G E V D++ +G + YN L++ +G +A +
Sbjct: 304 -VTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCR 362
Query: 189 EATKRGLFPELFRHNKLV 206
+ RGL P L +N LV
Sbjct: 363 DLKSRGLSPSLVTYNILV 380
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 9/226 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + M E GV+ N ++N +I + + EA K +M+ +PN T
Sbjct: 282 GRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITY 341
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G + ++ +++KS G+ PS++ Y +L++ + + A ++ EM
Sbjct: 342 NTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEE 401
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL--GMRFYNALLEALWCLGL 179
I +VT ++ F N M + + +L+ E GL + Y+ L+ G
Sbjct: 402 RGIKP-SKVTYTILIDTFARSDN--MEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
A+R+ ++ P +N ++ EG +Y A+ +
Sbjct: 459 MNEASRLFKSMVEKNCEPNEVIYNTMILGY----CKEGSSYRALKL 500
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + + M + G+ N ++ +I + G ++ + Y +M++ PN T
Sbjct: 212 GEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTY 271
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V++ C G ++ + F E++ G+ +++ Y L+ + + ++A ++D+M +
Sbjct: 272 NCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKS 331
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I N + +T + F + L G + YN L+ G
Sbjct: 332 DGI-NPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTS 390
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
AA+++ E +RG+ P + L+
Sbjct: 391 GAAKMVKEMEERGIKPSKVTYTILI 415
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M E G+ + ++ +I+ F + E+AI+ + ME++ P+ T ++ +C
Sbjct: 395 MVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFC 454
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G ++E+ F+ + P+ + Y ++ Y K A LL EM
Sbjct: 455 IKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEM 504
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 52/106 (49%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G+ + +++ +I F G+ EA + + M + C+PNE ++ YC G
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGS 493
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ + +E++ + P+V Y ++ V K + +A L+++M
Sbjct: 494 SYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKM 539
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E L M G+ N +FN +I + GR +E + VEM + P+E T ++
Sbjct: 36 EAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLV 95
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ YC G ++ E+ +G+ P+V+ Y L+ K+ + A D+MH +
Sbjct: 96 NGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLC 155
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +I G F + V +++ G+ + YNAL+ LG E A
Sbjct: 156 PNERTYTTIING-FAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIG 214
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+L + +G+ P++ ++ ++
Sbjct: 215 LLQDMVGKGVLPDVVSYSTII 235
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G N ++N +I+ + + R +EA M +PN T +++ C G
Sbjct: 9 MERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGR 68
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E+ E E+ G +P + Y L+ Y K + A L EM N +S + VT
Sbjct: 69 LKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSP-NVVTYT 127
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ N FD+++ G R Y ++ GL + A RVL+E T+
Sbjct: 128 SLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRS 187
Query: 194 GLFPELFRHNKLV 206
G P + +N L+
Sbjct: 188 GFIPSIVTYNALI 200
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 91/202 (45%), Gaps = 9/202 (4%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M G+ N ++ +I F Q G +EA + EM + P+ T A+++ +C G
Sbjct: 148 QMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLG 207
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++E+ Q++ G+LP V+ Y +++ +A++ D A+ + EM +
Sbjct: 208 RMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYS 267
Query: 133 QMIKGEFDD----ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+I+G + E+ E + KL + + Y L+ A G +A + D
Sbjct: 268 SLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFT-----YTTLINAYCKEGDLNKALHLHD 322
Query: 189 EATKRGLFPELFRHNKLVWSVD 210
E ++G P+ +N L+ ++
Sbjct: 323 EMIQKGFLPDAVTYNVLINGLN 344
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 62/118 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + + M +G++ N ++ ++I + + G A++ + +M PNERT
Sbjct: 102 GNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTY 161
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ + GL+DE+ E+ SG +PS++ Y L+ + R ++A GLL +M
Sbjct: 162 TTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDM 219
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 97/234 (41%), Gaps = 30/234 (12%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M V ++ +++++I+ + R EA + EM ++ P+E T +++ YC G
Sbjct: 254 MIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGD 313
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++++ E+ G LP + Y +L+ K R +A LL ++
Sbjct: 314 LNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKL-------------- 359
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
F D+S V Y NC + + AL++ GL + A +V + +
Sbjct: 360 -----FYDDSIPSAVTYNTLIENC--CNIEFKSAVALVKGFCMKGLMDEADQVFESMINK 412
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVV 247
P N+ +++V +H G + + K+Y+ + + +P TV+
Sbjct: 413 NHKP-----NEAIYNVIIHGHCRIG--NVLKAY--KLYKEMVHVDFVPHTVTVL 457
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140
F+E++ +G LP+V+ Y ++ Y K R D+A+G L M + + +T MI
Sbjct: 6 FKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEP-NLITFNMIINGLC 64
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
+ + V +++ +GY YN L+ G +A + E + GL P +
Sbjct: 65 RDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVV 124
Query: 201 RHNKLVWSV 209
+ L+ S+
Sbjct: 125 TYTSLINSM 133
>gi|440804730|gb|ELR25603.1| pentatricopeptide repeat domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 642
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 2/194 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + +RM++ G+A N F+A+I A GR ++A + + M+++ P+
Sbjct: 186 AGRADEAERYFARMTQLGLAPNLHCFSALINALGNAGRVDDAERCFDAMDQLGVVPDAHC 245
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ AG V E++ F +++ G++P + C+ L++ K+ + D A + ++
Sbjct: 246 FSTLIAALGTAGRVAEAERHFAKMEKLGVVPDLHCFSTLMSALTKAGKVDAAQHVFHQIA 305
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF-YNALLEALWCLGL 179
+ + +I G F D E+ F K+ G R Y+AL++A +
Sbjct: 306 SRGLKPDLVCFNALISG-FADAGRADEAEHWFAKITTTGRLKPDRISYSALIQANEVVAR 364
Query: 180 RERAARVLDEATKR 193
+RA +L E T +
Sbjct: 365 PDRALALLQEMTHK 378
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 4/203 (1%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L+ + G+ +S F+A+I A GR +EA + + M ++ PN A+++
Sbjct: 161 LAEIERRGLTPDSHCFSALITALGGAGRADEAERYFARMTQLGLAPNLHCFSALINALGN 220
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-NRISNIHQ 129
AG VD+++ F + G++P C+ L+A + R +A +M + ++H
Sbjct: 221 AGRVDDAERCFDAMDQLGVVPDAHCFSTLIAALGTAGRVAEAERHFAKMEKLGVVPDLHC 280
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ M ++VF ++ G + +NAL+ G + A +
Sbjct: 281 FSTLM--SALTKAGKVDAAQHVFHQIASRGLKPDLVCFNALISGFADAGRADEAEHWFAK 338
Query: 190 ATKRG-LFPELFRHNKLVWSVDV 211
T G L P+ ++ L+ + +V
Sbjct: 339 ITTTGRLKPDRISYSALIQANEV 361
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS-SGILPSVMCYC 97
+ + ++A M++ P+ T V+ FAGL E++ QF + S G+ P+ +
Sbjct: 487 YHQVLRAVDHMKQEGVRPDHATFSIVIDAAGFAGLPHEAEHQFHAMTSLHGLHPNANNFT 546
Query: 98 MLLAVYAKSNRWDDAYGLLDEM 119
L+ A++ + D A +LD +
Sbjct: 547 SLIEALARNGQLDKAEAVLDSL 568
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 93/209 (44%), Gaps = 1/209 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+++RM G+ + ++N ++ + + EE ++ + M + C PN T ++ C
Sbjct: 562 LVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLC 621
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ V+E+ + E+KS G+ P V+ + L+ + K D AYGL M +
Sbjct: 622 NSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTT 681
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
T +I F ++ N +M +F ++ G Y L++ G + + L E
Sbjct: 682 ATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLE 741
Query: 190 ATKRGLFPELFRHNKLVWSVDV-HRMWEG 217
++G P L +++ + V H++ E
Sbjct: 742 NIEKGFIPSLTTFGRVLNCLCVEHKVQEA 770
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 90/209 (43%), Gaps = 20/209 (9%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+NA++ + G F +A K Y+ M+ + + + T + +C G + + +
Sbjct: 192 SYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNM 251
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----TNRISNIHQVTGQMIKGEFD 140
G + + YC ++ + + D A L DEM ++ +++ + K F
Sbjct: 252 PVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFV 311
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
ES E +FDK+ G + +N ++ L G +RA R+L ++ GL P++
Sbjct: 312 LES-----ERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVV 366
Query: 201 RHNKLVWSV-----------DVHRMWEGG 218
+N ++ + +H+M GG
Sbjct: 367 TYNTVICGLCRKSRVVEAEECLHKMVNGG 395
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 12/228 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +S G+ + ++N VI + R EA + +M +PN+ T +++ YC
Sbjct: 352 LLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYC 411
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G+V ++ ++ G P YC L+ + + D A + + +
Sbjct: 412 KKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSII 471
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +IKG ++ + +++ +G + YN ++ L +G A ++ +
Sbjct: 472 VYNTLIKGLCQQGLILPALQ-LMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGD 530
Query: 190 ATKRGLFPELFRHNKLV------WSVD-----VHRMWEGGAYTAISVW 226
A +G P++F +N LV +D V+RMW G + +
Sbjct: 531 AITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITY 578
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 95/213 (44%), Gaps = 16/213 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFR---QGGRFEEAIKAYVEMEKVRCDPNE 58
G + E + +LS M + N+ +EA R + G+ +EA+ + M+ CDP+
Sbjct: 133 GKFNEMENLLSEMRSN--LDNTLLEGVYVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSV 190
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+ A++++ G +++ + + +K + V Y + + + ++ R A LL
Sbjct: 191 YSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRN 250
Query: 119 M-----HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
M +N ++ VTG G D++ ++ + + + C + +N L+ A
Sbjct: 251 MPVLGCFSNAVAYCTVVTGFYEFG--DNDRARELFDEMLECCLCP----DVTTFNKLVHA 304
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L G + R+ D+ KRG+ P LF N +
Sbjct: 305 LCKKGFVLESERLFDKVLKRGVCPNLFTFNIFI 337
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 79/181 (43%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N +I+ Q G A++ EM + C P+ T +++ C G + ++ +
Sbjct: 473 YNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAI 532
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+ G +P + Y L+ Y + + D A L++ M + ++ ++ G +
Sbjct: 533 TKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSE 592
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+++E +F + +G + YN ++E+L A +L E +GL P++ L
Sbjct: 593 EVME-IFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTL 651
Query: 206 V 206
+
Sbjct: 652 I 652
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
V+ + ++N +I AF + + A++ + EM+K CDP+ T ++ +C G V++
Sbjct: 677 VSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGY 736
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE 138
+ E G +PS+ + +L ++ +A G++ M I + + + +
Sbjct: 737 KFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDI--VPDTVNTIFEAD 794
Query: 139 FDDESNWQMVEYVFD 153
+ E+++D
Sbjct: 795 KKGHITYHAYEFLYD 809
>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 755
Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 1/194 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +KE A+L M G+ + S+ A I+A+ + G++E A++ +M PN T
Sbjct: 544 GRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITY 603
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+V+ G +++ + +E+K + + P +M Y + ++ K RW++A LL EM
Sbjct: 604 NSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPA 663
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ I+ + E W+ + + + G Y+ +EA G RE
Sbjct: 664 EGLTPDVISYTSAIRA-CNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRRE 722
Query: 182 RAARVLDEATKRGL 195
A ++ E +RGL
Sbjct: 723 EAVCLVREMAQRGL 736
Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/215 (21%), Positives = 95/215 (44%), Gaps = 1/215 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E +L +M G+ N ++N+ I+ +GG++E+A+ +M+++ P+ T
Sbjct: 474 GRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITY 533
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ ++ G E+ +E+ G+ P V+ Y + Y K+ +W+ A LL +M T
Sbjct: 534 NSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPT 593
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ + +T + W+ + +L + YN + A G E
Sbjct: 594 KGLTP-NVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWE 652
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A +L E GL P++ + + + + WE
Sbjct: 653 EALDLLREMPAEGLTPDVISYTSAIRACNAEGEWE 687
Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 1/208 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L M++ V + S+N+ I+A +GG++E I EM V P+ T +V++
Sbjct: 201 SLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGC 260
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G E+ E+ + G+ P + Y M + +S RW +A +L +M + ++
Sbjct: 261 GKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDV 320
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
IK W+ + D++ G +N+ + A G E+A +L
Sbjct: 321 ISYDAAIKA-CGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLR 379
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWE 216
E T GL P+ N + + W+
Sbjct: 380 EVTALGLTPDATSFNSAIAACTKSGRWK 407
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 6/234 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +KE +L +M GV + S++A I+A GG++E ++ EM PN
Sbjct: 299 GRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHF 358
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ + G +++ E +E+ + G+ P + +A KS RW +A LL EM
Sbjct: 359 NSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPA 418
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R+ I+ W+M + ++ +G + N + A G +
Sbjct: 419 KRLKPDAISYNSAIEA-CGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQ 477
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFM 235
+L + +GL P + +N + + WE A+ + L KM E+ M
Sbjct: 478 EGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWE----KALDL-LAKMKELAM 526
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/216 (19%), Positives = 97/216 (44%), Gaps = 1/216 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ +L M+ GVA N+ FN+ I A +GG++E+A++ E+ + P+ +
Sbjct: 333 GGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATS 392
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ ++ +G E+ E +E+ + + P + Y + K +W+ A L +M
Sbjct: 393 FNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMP 452
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T ++ + ++ + + WQ + ++ +G + YN+ ++ G
Sbjct: 453 TKGLTP-NVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQW 511
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E+A +L + + + P+ +N + + W+
Sbjct: 512 EKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWK 547
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/216 (21%), Positives = 89/216 (41%), Gaps = 2/216 (0%)
Query: 2 GLYKECQAILSRMSES-GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +++ +L + E GV+ N +N+ IEA G ++E A+ EM P+E +
Sbjct: 158 GQWEKALELLREIPEQEGVSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEIS 217
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ + G + +E+ S G+ P + Y ++ K +W +A +L EM
Sbjct: 218 YNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMS 277
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ ++ M W+ V ++ +G + Y+A ++A G
Sbjct: 278 AKGLTP-ETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQW 336
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E + +LDE RG+ P N + + WE
Sbjct: 337 ETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWE 372
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 9/221 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +KE ++L+ MS G+ + S+N I A + GR++EA++ +ME P+ +
Sbjct: 264 GQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISY 323
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
+A + G + S + E+ G+ P+ + + + K +W+ A LL E+
Sbjct: 324 DAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTA 383
Query: 121 ---TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
T ++ + K W+ + ++ + YN+ +EA
Sbjct: 384 LGLTPDATSFNSAIAACTK-----SGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKG 438
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
G E A + + +GL P + N + + W+ G
Sbjct: 439 GQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEG 479
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 45/217 (20%), Positives = 93/217 (42%), Gaps = 3/217 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ + +M G+ N S N I A + GR++E ++ +M PN T
Sbjct: 438 GGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVIT 497
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ + G +++ + ++K + P + Y +A +K RW +A LL EM
Sbjct: 498 YNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMP 557
Query: 121 TNRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
++ ++ T + + W+ + ++ +G + YN++++A G
Sbjct: 558 GQGLTPDVISYTAAI--DAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGE 615
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E+A +L E + + P+L +N + + WE
Sbjct: 616 WEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWE 652
>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 18/232 (7%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L +M+ +G ++ ++N +I + GR +EA K + +M+ PN + L
Sbjct: 318 KAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFL 377
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ C G E+ E F + + G P ++ YC LL YA + D GL + M +N I+
Sbjct: 378 ASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIA 437
Query: 126 NIHQVTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+V +I +G DD +F ++ +G + Y+ ++ A +G
Sbjct: 438 ADCRVFNILIHAYAKRGMVDD------AMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRL 491
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTA---ISVWLNK 229
A ++ RG+ P ++ ++ +H GG A +S +NK
Sbjct: 492 TDAMEKFNQMVARGIQPNTAVYHSIIQGFCMH----GGLVKAKELVSEMINK 539
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 3/201 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV--RCDPNERTLEAVL 65
+L RMSE G N S++ +++ + A+ + M K C PN V+
Sbjct: 213 NVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVI 272
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ G ++ F E+ G+ P V+ Y +++ K+ D A +L +M TN
Sbjct: 273 HGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQ 332
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
MI G + + +F K+ G + N+ L +L G + AA
Sbjct: 333 PDTVTYNCMIHG-YATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAE 391
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ D T +G P++ + L+
Sbjct: 392 IFDSMTAKGHKPDIVSYCTLL 412
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 98/217 (45%), Gaps = 16/217 (7%)
Query: 2 GLYKECQ-----AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
G +KE + ++ M+ GV + ++N +I+A + ++A +M P
Sbjct: 274 GFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQP 333
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+ T ++ Y G + E+ + F+++KS G++P+++ LA K R +A +
Sbjct: 334 DTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIF 393
Query: 117 DEM-----HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
D M + +S + G +G F D M+ +F+ + G R +N L+
Sbjct: 394 DSMTAKGHKPDIVSYCTLLHGYASEGWFAD-----MIG-LFNSMKSNGIAADCRVFNILI 447
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
A G+ + A + E ++G+ P++ ++ ++ +
Sbjct: 448 HAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISA 484
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 90/205 (43%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + + M +G+A + FN +I A+ + G ++A+ + EM++ P+ T
Sbjct: 419 GWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTY 478
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+S + G + ++ E+F ++ + GI P+ Y ++ + A L+ EM
Sbjct: 479 STVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMIN 538
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I V + + +FD + G + + +L++ +G +
Sbjct: 539 KGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMD 598
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A ++LD G+ ++ ++ L+
Sbjct: 599 KAFKILDAMEVVGVETDIVTYSTLL 623
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 85/205 (41%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE I M+ G + S+ ++ + G F + I + M+ + R
Sbjct: 384 GRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVF 443
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G+VD++ F E++ G+ P V+ Y +++ +++ R DA ++M
Sbjct: 444 NILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVA 503
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I V +I+G + E V + +N + F+N+++ +L G
Sbjct: 504 RGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVM 563
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + D T G P++ L+
Sbjct: 564 DAHDIFDLVTDIGERPDVITFTSLI 588
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 41/254 (16%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSF-NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GGL K + ++S M G+ R F N+VI + + GR +A + + + P+
Sbjct: 524 GGLVKA-KELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVI 582
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T +++ YC G +D++ + ++ G+ ++ Y LL Y K+ R +D L EM
Sbjct: 583 TFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREM 642
Query: 120 HTNRISNIHQVTGQMIKGEFD-------DESNWQMVE----------------------- 149
+ G M+ G F + +M+E
Sbjct: 643 QRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCA 702
Query: 150 ----YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+F KL + N ++ A++ + +E A + + GL P N+
Sbjct: 703 DEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLP-----NES 757
Query: 206 VWSVDVHRMWEGGA 219
+ V + + + GA
Sbjct: 758 TYGVMIINLLKDGA 771
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 85/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL M GV + +++ +++ + + GR + + + EM++ PN T +L+
Sbjct: 603 ILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLF 662
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG ++++F E+ SG +V Y ++L ++N D+A L ++ T +
Sbjct: 663 RAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSIT 722
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ MI + + + E +F ++ G Y ++ L G E A +
Sbjct: 723 ILNTMINAMYKVQRKEEAKE-LFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSS 781
Query: 190 ATKRGLFPELFRHNKLV 206
K G+ P N+++
Sbjct: 782 MEKSGIVPGSRLLNRII 798
>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 799
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 37/207 (17%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNER 59
GG + A + V + S N ++ + GRFE+AI + EM K+ C+P+
Sbjct: 207 GGQPRHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVV 266
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T A+L VY G + +++E F + G+ P+++ + LL YA + +A
Sbjct: 267 TFNALLHVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEAL------ 320
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
QV G ++K +F+ + + Y++LL A G
Sbjct: 321 ---------QVVGLLVKAKFEPD---------------------VVSYSSLLNAFGKAGY 350
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
E+A V D +R P L N L+
Sbjct: 351 PEKAQEVFDLMKQRSRKPNLVTFNGLM 377
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 99/216 (45%), Gaps = 4/216 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ Q + M + N +FN +++A+ G++E A + +M + R +PN T
Sbjct: 348 AGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVT 407
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ ++ + A ++ ++ F E K I +V + + Y ++ ++D+A LL+ M
Sbjct: 408 ICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKALLEVME 467
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + VT ++ +++ ++DK+ G L + +AL+ A G+
Sbjct: 468 EQNLRP-NGVTFLLLINAAGSLGDYREARTLYDKMVDLGIPLTVEPCSALINAFAKHGMY 526
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A + D+ K G + + L+ + +RM++
Sbjct: 527 NEARTIFDDMRKAGCKANVVTYTSLMIA---YRMYD 559
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 88/196 (44%), Gaps = 1/196 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + Q M G+A +FN ++ A+ G + EA++ + K + +P+ +
Sbjct: 279 GQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSY 338
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L+ + AG ++++E F +K P+++ + L+ YA + +++ A LL +M
Sbjct: 339 SSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAE 398
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
RI + VT + + V VF + L + +NA + A G +
Sbjct: 399 ARIEP-NVVTICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFD 457
Query: 182 RAARVLDEATKRGLFP 197
A +L+ ++ L P
Sbjct: 458 EAKALLEVMEEQNLRP 473
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y+E + + +M + G+ + +A+I AF + G + EA + +M K C N T
Sbjct: 489 GDYREARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTY 548
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108
+++ Y + D+++ +E+ ++GI P + + L K+NR
Sbjct: 549 TSLMIAY---RMYDDAQLACEEMVAAGITPDSIAFGTLFVALNKANR 592
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 4/187 (2%)
Query: 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+D +N +I + R ++A + EM+ RC P+ T A+++V+ AG + + F
Sbjct: 87 TDIYNCMIWLHARHQRADQARGLFYEMKVWRCKPDVETYNALMNVHGRAGQWRWALQIFD 146
Query: 83 EI--KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140
++ I PS Y L+ S +W A + M N + +T +I F
Sbjct: 147 DMLQAPKPIAPSRSSYNNLINACGSSGQWFKALEICKRMTDNGVGP-DLMTYNIILSAFK 205
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK-RGLFPEL 199
+ +D L + L +N +L L LG E A + E K G P++
Sbjct: 206 SGGQPRHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDV 265
Query: 200 FRHNKLV 206
N L+
Sbjct: 266 VTFNALL 272
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 80/203 (39%), Gaps = 22/203 (10%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74
+ +A + S+N +I A G++ +A++ M P+ T +LS + G
Sbjct: 151 APKPIAPSRSSYNNLINACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQP 210
Query: 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----------NR 123
+ + + S + + ++L K R++DA L EM N
Sbjct: 211 RHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNA 270
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +++ + GQ+ K + FD + EG + +N LL A G+ A
Sbjct: 271 LLHVYALCGQITKA-----------QETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEA 319
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+V+ K P++ ++ L+
Sbjct: 320 LQVVGLLVKAKFEPDVVSYSSLL 342
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 11/200 (5%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L + G N+ S+N V++ R+E+A + EM + C PN T ++S C
Sbjct: 125 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 184
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRIS 125
GLV+ + E ++I G P+ + Y LL + K + D A LD M + + +S
Sbjct: 185 KGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVS 244
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+T GE D + + +L +G + YN +++ L G + A
Sbjct: 245 YNTLLTALCRSGEVD------VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 298
Query: 186 VLDEATKRGLFPELFRHNKL 205
+L+E +GL P++ ++ +
Sbjct: 299 LLNEMVSKGLQPDIITYSTI 318
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 13/207 (6%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L M + ++ ++EA + +++A+K EM C P+ T V++
Sbjct: 53 AVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGI 112
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G VD++ E + + S G P+ + Y ++L + RW+DA L+ EM + +
Sbjct: 113 CQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMG-QKGCPPN 171
Query: 129 QVTGQMI------KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
VT M+ KG E +++E + K C L YN LL A ++
Sbjct: 172 VVTFNMLISFLCRKGLV--EPALEVLEQI-PKYGCTPNSLS---YNPLLHAFCKQKKMDK 225
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSV 209
A LD RG +P++ +N L+ ++
Sbjct: 226 AMAFLDLMVSRGCYPDIVSYNTLLTAL 252
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 8/182 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERT 60
GL + +L ++ + G NS S+N ++ AF + + ++A+ A++++ R C P+ +
Sbjct: 186 GLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAM-AFLDLMVSRGCYPDIVS 244
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L+ C +G VD + E ++K G P ++ Y ++ K+ + +A LL+EM
Sbjct: 245 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 304
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + +T I E + F K+ G YNA++ LGL
Sbjct: 305 SKGLQP-DIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAII-----LGLC 358
Query: 181 ER 182
+R
Sbjct: 359 KR 360
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 83/218 (38%), Gaps = 37/218 (16%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++NA++ + G+ + A + EM +P+ T ++ C G + E+
Sbjct: 2 AYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEM 58
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIHQVTGQMIKGEF 139
+P V+ Y +LL K + + A LLDEM + ++ V G +G
Sbjct: 59 LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 118
Query: 140 DD-------------ESN----------------WQMVEYVFDKLNCEGYGLGMRFYNAL 170
DD E N W+ E + ++ +G + +N L
Sbjct: 119 DDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNML 178
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
+ L GL E A VL++ K G P +N L+ +
Sbjct: 179 ISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHA 216
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 1/186 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A L M G + S+N ++ A + G + A++ +++ C P + V+
Sbjct: 228 AFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGL 287
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG E+ E E+ S G+ P ++ Y + A + +R +DA ++ I
Sbjct: 288 TKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNT 347
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ +I G ++ +F + G Y L+E L GL + A +LD
Sbjct: 348 VLYNAIILGLCKRRETHSAID-LFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLD 406
Query: 189 EATKRG 194
E R
Sbjct: 407 ELCSRA 412
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE +L+ M G+ + +++ + + R E+AI+A+ +++ + PN
Sbjct: 290 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVL 349
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ C + + F + +G +P+ Y +L+ A +A LLDE+
Sbjct: 350 YNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 408
>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
Length = 790
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 63/107 (58%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G + + S+N +I +F + GR EEA+K + E+E C P+ + ++++ G
Sbjct: 526 KMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNG 585
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+DE+ +F+E++ G+ P V+ Y L+ + K+++ + A L DEM
Sbjct: 586 DIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEM 632
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 92/198 (46%), Gaps = 1/198 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +LS++ E ++ ++ +N V+ A + + + Y +M++ P+ +
Sbjct: 479 AGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFS 538
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S + AG V+E+ + F+E+++S P ++ + L+ K+ D+A+ EM
Sbjct: 539 YNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR 598
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+S VT + F +M +FD++ EG + YN LL+ L G
Sbjct: 599 EEGLSP-DVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRT 657
Query: 181 ERAARVLDEATKRGLFPE 198
A + + ++GL P+
Sbjct: 658 AEAVDLYAKLKQQGLTPD 675
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/189 (19%), Positives = 84/189 (44%), Gaps = 9/189 (4%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
+ D++ +++E+ G+ EA+ ++ + R + VLS + + +
Sbjct: 465 DRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLY 524
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR----ISNIHQVTGQMIKG 137
+++K G P + Y +L++ + ++ R ++A + +E+ + I + + + + K
Sbjct: 525 EKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKN 584
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
DE++ + F ++ EG + Y+ L+E E A R+ DE G P
Sbjct: 585 GDIDEAHMR-----FKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSP 639
Query: 198 ELFRHNKLV 206
+ +N L+
Sbjct: 640 NIVTYNILL 648
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E M E G++ + +++ +IE F + + E A + + EM C PN T
Sbjct: 584 NGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVT 643
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99
+L +G E+ + + ++K G+ P + Y +L
Sbjct: 644 YNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 682
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 45 AYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYA 104
+ +M++ C+P+E T ++ + G DES FQE+ G P+++ Y ++ A
Sbjct: 314 VFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALA 373
Query: 105 KSNRWDDAYGLLDEMHTN 122
+ D L +M N
Sbjct: 374 NNRMVDKTIFLFSKMVEN 391
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 83/222 (37%), Gaps = 32/222 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M+E G N ++N +I+A ++ I + +M + C PN T
Sbjct: 341 GKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTF 400
Query: 62 EAVLSVYCFAG---LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+L+V G +DE E + + I Y L+ +K +A+ LL
Sbjct: 401 SVILNVLVAEGQLGRLDEVVEVSNKFMNKSI------YAYLVRTLSKLGHASEAHRLL-- 452
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD------------KLNCEGYGLGMRF 166
H E D ++ M+E + D K++ +
Sbjct: 453 ---------HLQYDWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVM 503
Query: 167 YNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
YN +L AL L + ++ + G P++F +N L+ S
Sbjct: 504 YNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISS 545
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L +M E G + ++N +I + G+ EE K EM K +P+ T
Sbjct: 572 GNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTY 631
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G +DE+ + E KS ++P+V Y +++ Y K+++ ++ L E+ T
Sbjct: 632 NLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLT 691
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ V +I+ + + + + + D + +G Y++L+ + +G E
Sbjct: 692 QNLELNSVVYNTLIRAYCRNGNTVEAFK-LHDDMRSKGIPPTTATYSSLIHGMCNIGRME 750
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++DE K GL P + + L+
Sbjct: 751 DAKCLIDEMRKEGLLPNVVCYTALI 775
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + + + + + NS +N +I A+ + G EA K + +M P T ++
Sbjct: 680 EEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSL 739
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----- 119
+ C G ++++K E++ G+LP+V+CY L+ Y K + D +L EM
Sbjct: 740 IHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDI 799
Query: 120 HTNRISNIHQVTGQMIKGE 138
H N+I+ + G G+
Sbjct: 800 HPNKITYTVMIDGYSKSGD 818
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 92/203 (45%), Gaps = 1/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E ++L E G N +N +I+ + + G +A++ +M +PN TL +
Sbjct: 399 FNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNS 458
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ +C G +++++ +E+ S G + + ++ ++R++ A L EM
Sbjct: 459 IIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRN 518
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ + ++ G + + VE F L +G+G + NAL+ L G + A
Sbjct: 519 MRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLE-KGFGANLVTTNALIHGLCKTGNMQEA 577
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
R+L + +RG + +N L+
Sbjct: 578 VRLLKKMLERGFVLDKITYNTLI 600
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 19/210 (9%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV+ + F+ I AF +GG+ E+AI+ + +MEK+ PN T ++ C G +DE+
Sbjct: 308 GVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEA 367
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+++ G+ +++ Y +L+ K ++++A +L E + V +I G
Sbjct: 368 FRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDG 427
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ N + + +G N++++ +G E+A +L+E RG
Sbjct: 428 -YCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRG--- 483
Query: 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227
+S++ GA+T I WL
Sbjct: 484 ---------FSIN------PGAFTTIIHWL 498
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + +++++I GR E+A EM K PN A++ YC G
Sbjct: 724 MRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQ 783
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+D+ QE+ S I P+ + Y +++ Y+KS A LL EM
Sbjct: 784 MDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEM 829
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 96/235 (40%), Gaps = 7/235 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ + M + GV+ N ++N +I + G +EA + +M K + T
Sbjct: 326 GGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLIT 385
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +E+ +E G P+ + Y L+ Y K DA + +M
Sbjct: 386 YSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMV 445
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ I N + VT I F + E + +++ G+ + + ++ L C+ R
Sbjct: 446 SKGI-NPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWL-CMNSR 503
Query: 181 -ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234
E A R L E R + P ++ L+ ++ EG A+ +W + + F
Sbjct: 504 FESALRFLREMLLRNMRP----NDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGF 554
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/111 (18%), Positives = 51/111 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + ++ M + G+ N + A+I + + G+ ++ + EM PN+ T
Sbjct: 747 GRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITY 806
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
++ Y +G + + + E+ GI+P + Y +L + K + ++
Sbjct: 807 TVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEG 857
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 88/212 (41%), Gaps = 15/212 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + IL M G + N +F +I RFE A++ EM PN+ L
Sbjct: 467 GQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLL 526
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
++ C G ++ E + + G +++ L+ K+ +A LL +M
Sbjct: 527 TTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLE 586
Query: 121 ----TNRISNIHQVTGQMIKGEFDD--ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
++I+ ++G +G+ ++ + +MV+ +G YN L+ +
Sbjct: 587 RGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK--------QGIEPDTFTYNLLIHGM 638
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G + A + +E R L P ++ + ++
Sbjct: 639 CRIGKLDEAVNLWNECKSRDLVPNVYTYGVMI 670
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 15/205 (7%)
Query: 9 AILSRMSESGVARNSDSF--NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
A L+ + ESGVA + + FR G F AI + + P +T +LS
Sbjct: 229 ADLNEVGESGVAVAAVDLLIHVYCTQFRNVG-FRNAIGVFRFLANKGVFPTVKTCTFLLS 287
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----T 121
A +++S F+ ++ G+ P V + + + K + +DA L +M
Sbjct: 288 SLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSP 346
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N ++ + + G G D+ ++ +K+ +G + Y+ L+ L L
Sbjct: 347 NVVTYNNLIHGLCKHGNLDEAFRFK------EKMVKDGVNATLITYSVLINGLMKLEKFN 400
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A VL E ++G P +N L+
Sbjct: 401 EANSVLKETLEKGFTPNEVVYNTLI 425
>gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 702
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 113/268 (42%), Gaps = 33/268 (12%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSV 67
AI M E G++ +N ++ G +EA + + +M+ CDP+ T ++++V
Sbjct: 371 AIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITV 430
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
Y +G V E++ +++ +G P++ ++ Y K+ + DD D++ I+
Sbjct: 431 YACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPD 490
Query: 128 HQVTGQMIKGEFDDESN----------------WQMVEYVFDKLNCE------------- 158
+ G ++ S Q+V+ + ++ NCE
Sbjct: 491 DRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELID 550
Query: 159 --GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
G + + N L++ L ERA +L + ++ L + WS+ + +
Sbjct: 551 SIGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSL 610
Query: 217 GGAYTAISVWLNKMYEMFM-MGEDLPQL 243
G A TA+ VW+N + E + GE+ P L
Sbjct: 611 GAALTALHVWMNDLSEAALESGEEFPPL 638
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 87/202 (43%), Gaps = 1/202 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ + + M E G+ ++ +F +I RQ G + A++ + +M C+P+ T+ A+
Sbjct: 192 EKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAM 251
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ Y AG VD + + ++ + + L+ +Y S +D + +EM +
Sbjct: 252 IDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGV 311
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ ++I + WQ + ++ L G+ Y AL+ A + A
Sbjct: 312 KPNLVIYNRLIDSMGRAKRPWQ-AKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDAL 370
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ E ++GL + +N L+
Sbjct: 371 AIYREMKEKGLSLTVILYNTLL 392
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y C I M GV N +N +I++ + R +A Y ++ PN T
Sbjct: 293 SGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWST 352
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ Y A D++ ++E+K G+ +V+ Y LL++ A D+A+ + +M
Sbjct: 353 YAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDM 411
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ + SG+ + ++N +I A + EEA+ + +ME RC P+ T A++SVY
Sbjct: 308 LLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYG 367
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+++E F+E++S G P + Y LL +++ + + +EM R +
Sbjct: 368 RCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEM-VKRGFGQDE 426
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T I + + ++ + G Y L+++L E AA V+ E
Sbjct: 427 MTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSE 486
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P L ++ L+
Sbjct: 487 MLDAGVKPTLHTYSALI 503
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 97/217 (44%), Gaps = 3/217 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y+ +AI + M G + DS N +++A R E E++ + ++ +
Sbjct: 822 SGCYERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSS 881
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ L + AG + E ++ + +K++G P++ Y ++L + K R D +L EM
Sbjct: 882 ILLTLEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEME 941
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
Q+ ++K E +++ + ++ K+ YN L+ ++C R
Sbjct: 942 EAGFQPDLQICNSILKLYLGIE-DFKSMGIIYQKIQDASLKPDEETYNTLI-IMYCRDRR 999
Query: 181 -ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E ++++ GL P+L + L+ + + RM+E
Sbjct: 1000 PEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYE 1036
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 95/208 (45%), Gaps = 8/208 (3%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74
+ES V +NA++ + + GRF + + M + C P+ + +++ +G +
Sbjct: 241 AESSVGDTVQVYNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAM 300
Query: 75 DE--SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ + + E++ SGI P ++ Y L++ ++ + ++A + +M ++R
Sbjct: 301 EPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYN 360
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
MI + + + E +F +L +G+ YN+LL A G E+ + +E K
Sbjct: 361 AMI-SVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVK 419
Query: 193 RGLFPELFRHNKLVWSVDVHRMWEGGAY 220
RG F +++ ++ +H + G +
Sbjct: 420 RG-----FGQDEMTYNTIIHMYGKQGRH 442
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/251 (17%), Positives = 99/251 (39%), Gaps = 32/251 (12%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+Y++ + + + +G + ++ +++ +R G +A M++ +P T+
Sbjct: 1034 MYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMH 1093
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ Y +G +E++ + ++++G++ + Y ++ Y K + L EM
Sbjct: 1094 LLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEA 1153
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFY--------------- 167
I H++ I+ E + + + + L G+ L +R
Sbjct: 1154 GIEPDHRIWTCFIRAATLSEGTNEAI-VLLNALQDAGFDLPIRLLKEKSESLVSEVDQCL 1212
Query: 168 ---------------NALLEALWCLGLRERAARVLDEATKRGLF-PELFRHNKLVWSVDV 211
NAL++ LW LR A+ V A KR ++ ++FR W D
Sbjct: 1213 ERLEPVEDNAAFNLVNALVDLLWAFELRATASWVFQLAIKRSIYRHDIFRVADKDWGADF 1272
Query: 212 HRMWEGGAYTA 222
++ G A A
Sbjct: 1273 RKLSAGSALDA 1283
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 58/111 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + I M + G ++ ++N +I + + GR ++A++ Y +M+ +P+ T
Sbjct: 405 GNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTY 464
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
++ A V+E+ E+ +G+ P++ Y L+ YAK+ + ++A
Sbjct: 465 TVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEA 515
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/212 (18%), Positives = 87/212 (41%), Gaps = 14/212 (6%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+K I ++ ++ + + +++N +I + + R EE +M + +P T +
Sbjct: 965 FKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRS 1024
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ + + ++++E F+E++S+G Y +++ Y S A LL M +
Sbjct: 1025 LITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESG 1084
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I T ++ + + E V L G L Y+++++A G +
Sbjct: 1085 IEPTIS-TMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAG 1143
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
L E + G+ P+ HR+W
Sbjct: 1144 IEKLTEMKEAGIEPD-------------HRIW 1162
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 60/133 (45%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E ++S M ++GV +++A+I A+ + G+ EEA + + M + P+ +
Sbjct: 478 EEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVM 537
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L + + ++ + E+ G P Y +++ + N WD ++ +M
Sbjct: 538 LDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDMEELSG 597
Query: 125 SNIHQVTGQMIKG 137
N ++ ++KG
Sbjct: 598 MNPQVISSVLVKG 610
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 55/118 (46%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ + +L M E+G + N++++ + F+ Y +++ P+E T +
Sbjct: 931 RDVETMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTL 990
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+ +YC +E +++S G+ P + Y L+ + K ++ A L +E+ +N
Sbjct: 991 IIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSN 1048
>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
Length = 674
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 92/186 (49%), Gaps = 1/186 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM G+ + ++N+VI+ + + GR EA++ Y +++ V + T A+ +VY AG
Sbjct: 203 RMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAG 262
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ QE++ SG P+ + L+ +K+ + + A + +EM T+ +S VT
Sbjct: 263 DYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPT-PVTL 321
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ + + V++ L EG+ + YN+L++A G E+A +L E +
Sbjct: 322 SILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKR 381
Query: 193 RGLFPE 198
G P+
Sbjct: 382 AGCNPD 387
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/254 (18%), Positives = 100/254 (39%), Gaps = 39/254 (15%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N++++A +GGR E+A EM++ C+P+ T ++ Y G+VD ++ F ++
Sbjct: 356 YNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVV 415
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE-MHTNRISNIHQVTGQMIK----GEFD 140
+ P + +++ + + A + DE M + S +V+G ++ + D
Sbjct: 416 ALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPDERVSGMLLSCMAMAKND 475
Query: 141 DESNWQMVEYVFDKLNCEGYGL--------------------------------GMRFYN 168
DE + DK N + L N
Sbjct: 476 DER--LAILDCLDKFNAPLHELMSAIVRKEEPRSRDEVAEMVEKFISDYPETDSRKPLCN 533
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLN 228
L++ +G++ A ++ G + L + +W +++ + A AI W++
Sbjct: 534 CLIDICSSVGMKHAAHKIFAMGVAVGAYDGLQTNLPSLWRLNLRTLSMPAAECAIEAWVS 593
Query: 229 KMYEMFMMGEDLPQ 242
+ G++LP+
Sbjct: 594 SLKAAVREGDELPE 607
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 2/207 (0%)
Query: 1 GGLYKECQAILSRM-SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
G KE + M S+ + ++ +++ +I+ F GG+ + A K M CDPN
Sbjct: 248 NGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVF 307
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ +C G ++E+KE F E+KSSG+ P + Y L+ + R D+A LL EM
Sbjct: 308 NYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEM 367
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
T VT ++ E + + + L EG L Y +L L G
Sbjct: 368 -TEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNFLCQKGE 426
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
E++ +L RG P N+L+
Sbjct: 427 LEKSCALLGLMLSRGFVPHYATSNELL 453
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 14/221 (6%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-PNERTLEAVLSVYCFAGLVDES 77
V N+ FN +++ + G E A++ EM+K R PN T ++ C G + E+
Sbjct: 195 VRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEA 254
Query: 78 KEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVTGQMI 135
E F+E+ S ILP + Y +L+ + + D A +++ M +N N+ + ++
Sbjct: 255 IELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYS--VL 312
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
F E + + VFD++ G Y L+ +G + A +L E T+
Sbjct: 313 MNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKC 372
Query: 196 FPELFRHNKLVWSV-------DVHRMWEGGAYTAISVWLNK 229
+ N L+ + + RM E AY V+LNK
Sbjct: 373 KADAVTFNVLLKGLCREGRFDEALRMLENLAYEG--VYLNK 411
>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
Length = 353
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 11/200 (5%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L + G N+ S+N V++ R+E+A + EM + C PN T ++S C
Sbjct: 50 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 109
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRIS 125
GLV+ + E ++I G P+ + Y LL + K + D A LD M + + +S
Sbjct: 110 KGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVS 169
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+T GE D + + +L +G + YN +++ L G + A
Sbjct: 170 YNTLLTALCRSGEVD------VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 223
Query: 186 VLDEATKRGLFPELFRHNKL 205
+L+E +GL P++ ++ +
Sbjct: 224 LLNEMVSKGLQPDIITYSTI 243
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 8/182 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERT 60
GL + +L ++ + G NS S+N ++ AF + + ++A+ A++++ R C P+ +
Sbjct: 111 GLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAM-AFLDLMVSRGCYPDIVS 169
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L+ C +G VD + E ++K G P ++ Y ++ K+ + +A LL+EM
Sbjct: 170 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 229
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + +T I E + F K+ G YNA++ LGL
Sbjct: 230 SKGLQP-DIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAII-----LGLC 283
Query: 181 ER 182
+R
Sbjct: 284 KR 285
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 1/187 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A L M G + S+N ++ A + G + A++ +++ C P + V+
Sbjct: 153 AFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGL 212
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG E+ E E+ S G+ P ++ Y + A + +R +DA ++ I
Sbjct: 213 TKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNT 272
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ +I G ++ +F + G Y L+E L GL + A +LD
Sbjct: 273 VLYNAIILGLCKRRETHSAID-LFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLD 331
Query: 189 EATKRGL 195
E RG+
Sbjct: 332 ELCSRGV 338
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE +L+ M G+ + +++ + + R E+AI+A+ +++ + PN
Sbjct: 215 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVL 274
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ C + + F + +G +P+ Y +L+ A +A LLDE+
Sbjct: 275 YNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 333
Score = 36.6 bits (83), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
++ + G+ N+ +NA+I + AI + M C PNE T ++ + G
Sbjct: 262 KVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEG 321
Query: 73 LVDESKEQFQEIKSSGIL 90
L+ E+++ E+ S G++
Sbjct: 322 LIKEARDLLDELCSRGVV 339
>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
mitochondrial [Vitis vinifera]
Length = 876
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 8/201 (3%)
Query: 10 ILSRMSESGVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ +MS+ R NS +++ +I + GR EEA + EM + C P+ RT ++
Sbjct: 228 VFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAK 287
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G+ D++ + E+ + +P+V Y +L+ + + ++A G+ +M + +
Sbjct: 288 CDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGI 347
Query: 129 QVTGQMIKGEFDDE---SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+I G + S +Q++ V +K NC+ +R YN L+E L + +A
Sbjct: 348 ITFNALINGYCKEGWVVSAFQLLS-VMEKGNCKP---NIRTYNELMEGLCRVSKSYKAFL 403
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+L GL P+ +N LV
Sbjct: 404 LLRRVVDNGLLPDRVTYNILV 424
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 61/132 (46%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A+L +M + G+ + + +IE + G ++K M++ C PN T ++
Sbjct: 540 EANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIII 599
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ C G V+E++ + S G+ P+ Y +L+ + K+ R D A+ ++ M N
Sbjct: 600 NGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQ 659
Query: 126 NIHQVTGQMIKG 137
+ ++ G
Sbjct: 660 PNSHIYSALLSG 671
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 34/229 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E + M E G ++ ++ +I+A G ++A+K EM C PN T
Sbjct: 255 AGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHT 314
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G ++E+ F+++ G+ P ++ + L+ Y K A+ LL M
Sbjct: 315 YTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVME 374
Query: 121 TN-----------------RISNIHQ-----------------VTGQMIKGEFDDESNWQ 146
R+S ++ VT ++ F E
Sbjct: 375 KGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLN 434
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
M +F+ +N G + AL++ L LG E+A +L K+G+
Sbjct: 435 MAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGI 483
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 24/201 (11%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM ++G + N ++ +I GR EEA M PN T ++ +
Sbjct: 579 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 638
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +D + + + +G P+ Y LL+ + SN A L S+
Sbjct: 639 KAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARAL---------SSTGD 689
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR------------FYNALLEALWCL 177
+ + + E +D N + +VF ++ + + L +R YN L+ L
Sbjct: 690 LDARSLSSEEND--NNCLSSHVFRLMDVD-HALKIRDEIKKCGVPTEDLYNFLVVGLCKE 746
Query: 178 GLRERAARVLDEATKRGLFPE 198
G A ++ + K GLFP+
Sbjct: 747 GRIIEADQLTQDMVKHGLFPD 767
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 88/240 (36%), Gaps = 36/240 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT- 60
G +E + +M + G+ +FNA+I + + G A + MEK C PN RT
Sbjct: 326 GKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTY 385
Query: 61 ---LEAVLSV-------------------------------YCFAGLVDESKEQFQEIKS 86
+E + V +C G ++ + F + S
Sbjct: 386 NELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNS 445
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
+G+ P + L+ K R + A G+L M IS + +VT + +
Sbjct: 446 AGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGIS-LDEVTFTALIDGHCKIGKAK 504
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V ++F+ + +N L+AL A +L + K GL P + H L+
Sbjct: 505 DVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILI 564
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + IL MS GV+ N ++ +++A + GR + A + M K C PN
Sbjct: 606 GRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 665
Query: 62 EAVLSVYCFA 71
A+LS + +
Sbjct: 666 SALLSGFVLS 675
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 83/197 (42%), Gaps = 3/197 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ IL M + G++ + +F A+I+ + G+ ++ + M + RC T
Sbjct: 466 GRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTF 525
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
L ++E+ ++ G++PSV+ + +L+ + ++ + +L+ M
Sbjct: 526 NCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQ 585
Query: 122 NRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
S N++ T +I + + E + ++ G Y L++A G
Sbjct: 586 AGCSPNVYTYT--IIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 643
Query: 181 ERAARVLDEATKRGLFP 197
+RA +++ K G P
Sbjct: 644 DRAFQIVSTMVKNGCQP 660
>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 1/185 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+S+ + ++ ++N +I F Q G+ + A M+ C PN +++ YC G
Sbjct: 253 VSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGR 312
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E+KE F EIKS G+ P + Y L+ ++ R D+A LL +M ++ VT
Sbjct: 313 LQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQM-KDKDCRADTVTFN 371
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ G E + + KL EG+ L Y +L L G +A +L R
Sbjct: 372 VMLGGLCREGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLMLNR 431
Query: 194 GLFPE 198
G P
Sbjct: 432 GFVPH 436
>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 465
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 11/192 (5%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
S M G++ N +++A+I F G+ ++A+ + +M P+ T ++ V+C +
Sbjct: 251 SEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKS 310
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQV 130
G + + + E+ G P+++ Y +L K++R D A LL ++ I N+H
Sbjct: 311 GKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTY 370
Query: 131 T----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
T G G+ +D N +F+ L +GY + + Y + GL + A+ +
Sbjct: 371 TILIDGLCTSGKLEDARN------IFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASAL 424
Query: 187 LDEATKRGLFPE 198
L + + G P+
Sbjct: 425 LSKMEENGCIPD 436
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 6/223 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L R+ V N ++ +I+ + +A Y EM PN T A++S +
Sbjct: 214 LLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFF 273
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + ++ + F ++ S I P V + +L+ V+ KS + A L+DEMH +R +
Sbjct: 274 TVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMH-DRGQPPNI 332
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT I + KL +G M Y L++ L G E A + ++
Sbjct: 333 VTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFED 392
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+G + + + V + + G + S L+KM E
Sbjct: 393 LLVKG-----YDITVVTYIVMFYGFCKKGLFDEASALLSKMEE 430
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 5/147 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + ++M + + +FN +++ F + G+ A+K EM PN T
Sbjct: 276 GKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTY 335
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
++L C VD++ ++K GI P++ Y +L+ S + +DA + +++
Sbjct: 336 SSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLV 395
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDES 143
++ I G KG FD+ S
Sbjct: 396 KGYDITVVTYIVMFYGFCKKGLFDEAS 422
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/219 (18%), Positives = 95/219 (43%), Gaps = 2/219 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ +++ + G N+ +F +I+ G+ +A+ + ++ + N+ +
Sbjct: 136 GLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISY 195
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G + + + + + P+V+ Y ++ K +DA+ L EM +
Sbjct: 196 GTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVS 255
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
IS +I G F V+ +F+K+ E + +N L++ G
Sbjct: 256 KGISPNVVTYSALISGFFTVGKLKDAVD-LFNKMISENIKPDVYTFNILVDVFCKSGKIS 314
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV-DVHRMWEGGA 219
A +++DE RG P + ++ ++ ++ HR+ + A
Sbjct: 315 YALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVA 353
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/189 (19%), Positives = 80/189 (42%), Gaps = 1/189 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G N S+ +I+ + G A+ ++ PN ++ C V+++
Sbjct: 187 GFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDA 246
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ + E+ S GI P+V+ Y L++ + + DA L ++M + I T ++
Sbjct: 247 FDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKP-DVYTFNILVD 305
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
F + D+++ G + Y+++L+AL ++A +L + +G+ P
Sbjct: 306 VFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRP 365
Query: 198 ELFRHNKLV 206
+ + L+
Sbjct: 366 NMHTYTILI 374
>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Cucumis sativus]
Length = 576
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 93/195 (47%), Gaps = 1/195 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M++S + +N +++A+ Q +++ Y+E+ + C P E T +L YC +GL
Sbjct: 146 MNKSTFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLKAYCKSGL 205
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+++++ F E++ G+ PS + Y + K A + M + T
Sbjct: 206 LEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTD-TYT 264
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
M+ + ES M + +FD++ + + + AL+ AL GL E+A + ++ +
Sbjct: 265 MLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEA 324
Query: 194 GLFPELFRHNKLVWS 208
G P+++ +N L+ S
Sbjct: 325 GYEPDVYAYNALMES 339
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 3/205 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
LYK+ ++ + ES D++ +++A+ + G E+A + EM K P+
Sbjct: 170 LYKDVESTYLELLESHCIPTEDTYALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYN 229
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
A + G ++ E F +K G P+ Y ML+ VY K ++ A + DEM T
Sbjct: 230 AYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQ 289
Query: 123 RI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R NI T + E + E +F+++ GY + YNAL+E+ G
Sbjct: 290 RCKPNICTFTA--LVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPY 347
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
AA + G P+ +N +V
Sbjct: 348 GAAEIFSLMQHMGCEPDRASYNIMV 372
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 93/198 (46%), Gaps = 1/198 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + I +M E+G + ++NA++E++ + G A + + M+ + C+P+ +
Sbjct: 309 GLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASY 368
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y AGL ++++ F+E+K GI P++ + +LL+ Y+ + ++ +MH
Sbjct: 369 NIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHK 428
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + V M+ + + +E +F + + YN L+ G E
Sbjct: 429 SGLKPDTFVMNSMLN-LYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVE 487
Query: 182 RAARVLDEATKRGLFPEL 199
R + + L P++
Sbjct: 488 RMEELFQLLPAKNLEPDV 505
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 11/211 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + I RM G +D++ +I + + + A + EM RC PN T
Sbjct: 238 GGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICT 297
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA---YGLLD 117
A+++ GL ++++E F++++ +G P V Y L+ Y+++ A + L+
Sbjct: 298 FTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQ 357
Query: 118 EM--HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
M +R S V G +D + VF+++ G M+ + LL A
Sbjct: 358 HMGCEPDRASYNIMVDAYGRAGLHED------AQAVFEEMKRIGITPTMKSHMLLLSAYS 411
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + ++ + K GL P+ F N ++
Sbjct: 412 SAGNVAKCEDIIGQMHKSGLKPDTFVMNSML 442
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 60/119 (50%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +C+ I+ +M +SG+ ++ N+++ + + G+F + + M+K C + T
Sbjct: 413 AGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADIST 472
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++VY AG V+ +E FQ + + + P V+ + + Y++ + L ++M
Sbjct: 473 YNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKM 531
>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 587
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 110/230 (47%), Gaps = 15/230 (6%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +++ + +++ M + + + VI + Q G F+ AI+ +M K C N T
Sbjct: 270 AGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVT 329
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
AV+S C G VD + +++ G P++ Y +L+ + RW+DA L+ +M
Sbjct: 330 YNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMS 389
Query: 120 HTNRISNIHQVTGQMIKGEFDDES-NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
T+ + +I +T I G + Q VE VF ++ +G Y++++E L G
Sbjct: 390 QTDCLPDI--LTFNTIIGFLCQKGLTMQAVE-VFKQMPEKGCCPNSVTYSSVIEGLAKTG 446
Query: 179 LRERAARVLDEATKRGLFPELFRH---------NKLVWSVD-VHRMWEGG 218
E++ +L+E +G PE+ H +KLV ++ VH++ + G
Sbjct: 447 KMEQSLELLNEMGSKGFNPEINYHLLAECLNEEDKLVEAIQMVHKLQDTG 496
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 1/215 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +L M G A + ++N ++EA +G + +A++ M C P T
Sbjct: 166 GQVRDALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTY 225
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G VD ++E + S G P+ + Y +L + RW+D L+ EM +
Sbjct: 226 NVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFS 285
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ T ++ E +Q + +K++ + YNA++ L G +
Sbjct: 286 ENCPP-SEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVD 344
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A +L G P +F +N LV + WE
Sbjct: 345 GALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWE 379
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + ++M + + +FN ++ AF + G+ +E + M K PN T
Sbjct: 274 GKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTY 333
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC V+++K F + G+ P + Y +++ + K ++D+A L EMH
Sbjct: 334 NSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR 393
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I +I G + D+++ G + YN++L+AL +
Sbjct: 394 KNIIPDVVTYSSLIDG-LSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVD 452
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A +L + +G P++ ++ L+
Sbjct: 453 KAIALLTKFKDKGFQPDISTYSILI 477
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 90/204 (44%), Gaps = 1/204 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ ++I + M++ GV + S++ +I F + +F+EA+ + EM + P+ T +++
Sbjct: 348 KAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLI 407
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+G + + + ++ G+ P++ Y +L K+++ D A LL +
Sbjct: 408 DGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQ 467
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+IKG + VF+ L +GY L + Y +++ GL A
Sbjct: 468 PDISTYSILIKG-LCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALA 526
Query: 186 VLDEATKRGLFPELFRHNKLVWSV 209
+L + G P+ + ++ S+
Sbjct: 527 LLSKMEDNGCIPDAKTYEIIILSL 550
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 1/175 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+ +I + G A+ ++ PN ++ C LV+E+ + F E+
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S GI P V+ Y L++ + + DA L ++M I T ++ F +
Sbjct: 252 VSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKP-DVYTFNILVNAFCKDGK 310
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
+ + VFD + +G YN+L++ + +A + + + G+ P++
Sbjct: 311 MKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDI 365
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/198 (17%), Positives = 83/198 (41%), Gaps = 3/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L R+ + V N +N +I++ + EA + EM P+ T A++S +C
Sbjct: 212 LLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFC 271
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + ++ + F ++ I P V + +L+ + K + + + D M I
Sbjct: 272 ILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFV 331
Query: 130 VTGQMIKGE-FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G E N + +F+ + G ++ Y+ ++ + + A +
Sbjct: 332 TYNSLMDGYCLVKEVNK--AKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFK 389
Query: 189 EATKRGLFPELFRHNKLV 206
E ++ + P++ ++ L+
Sbjct: 390 EMHRKNIIPDVVTYSSLI 407
>gi|326524037|dbj|BAJ97029.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 599
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +L+RM +GVA + FN ++ F GRFE+A + EME+ C PN + ++
Sbjct: 210 EAKHVLARMKAAGVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRDCPPNAVSYTTLM 269
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G VDE F E++ G P + Y L+ + K+ R Y LD M
Sbjct: 270 QGLGSKGRVDEVMRVFVEMRRKGCTPDSVTYGTLVTAFCKAGRLSQGYEFLDSM 323
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 11/159 (6%)
Query: 42 AIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101
A + VE + R + R A+L +C +DE+K +K++G+ P V+ + LLA
Sbjct: 176 AAERLVEELQPRLPLSLRHYTALLYGWCRLAKLDEAKHVLARMKAAGVAPDVVVFNTLLA 235
Query: 102 VYAKSNRWDDAYGLLDEMH-----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN 156
+ R++DA+ L EM N +S + G KG D+ V VF ++
Sbjct: 236 GFVADGRFEDAFELAREMERRDCPPNAVSYTTLMQGLGSKGRVDE------VMRVFVEMR 289
Query: 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+G Y L+ A G + LD ++ GL
Sbjct: 290 RKGCTPDSVTYGTLVTAFCKAGRLSQGYEFLDSMSRDGL 328
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 3/133 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + M N+ S+ +++ GR +E ++ +VEM + C P+ T
Sbjct: 241 GRFEDAFELAREMERRDCPPNAVSYTTLMQGLGSKGRVDEVMRVFVEMRRKGCTPDSVTY 300
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C AG + + E + G+ Y + K + ++ L++ M
Sbjct: 301 GTLVTAFCKAGRLSQGYEFLDSMSRDGLRVDPGVYLGFFVAHEKEQQLEECLELMERMRE 360
Query: 122 NRIS---NIHQVT 131
R NI+ V
Sbjct: 361 CRCPPDLNIYNVV 373
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 36/197 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M GV N S+ I Q RF+EA + +ME C P+ T ++ V C
Sbjct: 342 LLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLC 401
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG + ++K+ F ++K S P + Y LL
Sbjct: 402 DAGRISDAKDVFWKMKKSDQKPDRVTYITLL----------------------------- 432
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+F D + Q V +++ + +GY + Y A+++AL +G A + DE
Sbjct: 433 -------DKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDE 485
Query: 190 ATKRGLFPELFRHNKLV 206
++G+ PE + +N L+
Sbjct: 486 MKQKGIVPEQYSYNSLI 502
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 85/196 (43%), Gaps = 1/196 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + + NAV+ + GR A + + E++ + P+ T ++ A
Sbjct: 556 MKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASK 615
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
DE+ + F ++ + +P V+ L+ K+ R D+A+ + ++ +
Sbjct: 616 FDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNT 675
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ G E + V ++ +++ Y + YN +L+ L G A +L T +
Sbjct: 676 LLAG-LGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTK 734
Query: 194 GLFPELFRHNKLVWSV 209
G P+L +N +++ +
Sbjct: 735 GCIPDLSSYNTVIYGL 750
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 5/203 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + M + G+ S+N++I F + RF +A++ + M+ PN T +
Sbjct: 478 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFI 537
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ Y +G ++ ++++ +KS GI+P V+ +L AKS R A + E+ +S
Sbjct: 538 NYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVS 597
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKL--NCEGYGLGMRFYNALLEALWCLGLRERA 183
MIK + V+ +D + NC L + N+L++ L+ G + A
Sbjct: 598 PDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAV---NSLIDTLYKAGRGDEA 654
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
R+ + + L P +N L+
Sbjct: 655 WRIFYQLKEMNLEPTDGTYNTLL 677
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 45/263 (17%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + + M E G + ++N +++A + R EE +K EM + + T ++S
Sbjct: 900 EGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISG 959
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT------ 121
+ ++++ + + + S G P+ Y LL K+ R +DA L +EM
Sbjct: 960 LVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKAN 1019
Query: 122 ----NRISNIHQVTG------QMIKGEFDDESNWQMVEY--VFDKLNCEGYGL--GMRF- 166
N + N H++ G + + D N + Y + D L C+ L G+ +
Sbjct: 1020 CTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTL-CKAGQLNDGLTYF 1078
Query: 167 --------------YNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
YN L++ L E A + +E K+G+ P L+ +N L+ +H
Sbjct: 1079 RQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLI----LH 1134
Query: 213 RMWEGGAYTAISVWLNKMYEMFM 235
G A A KMYE +
Sbjct: 1135 LGKAGKAAEA-----GKMYEELL 1152
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
++ E G+ + ++N +I+ + R EEA+ + EM+K PN T +++ AG
Sbjct: 1080 QLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAG 1139
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ + ++E+ + G P+V Y L+ Y+ S D AY M
Sbjct: 1140 KAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRM 1186
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + +M +S + ++ +++ F G + ++ + M+ + N
Sbjct: 404 GRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAY 463
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
AV+ C G V E+ E F E+K GI+P Y L++ + K++R+ DA L M
Sbjct: 464 TAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHM 521
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 56/118 (47%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E I M E+ + + N++I+ + GR +EA + + +++++ +P + T
Sbjct: 616 FDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNT 675
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ G V E +E+ S P+++ Y +L K+ +DA +L M T
Sbjct: 676 LLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTT 733
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I + M G N ++ AVI+A Q GR EA++ + EM++ P + + +++S +
Sbjct: 447 IWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFL 506
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A ++ E F+ + G P+ + + + Y KS A + M + I
Sbjct: 507 KADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVP-DV 565
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V G + M + VF +L G Y +++ + A ++ +
Sbjct: 566 VAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYD 625
Query: 190 ATKRGLFPELFRHNKLV 206
+ P++ N L+
Sbjct: 626 MIENNCVPDVLAVNSLI 642
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 85/208 (40%), Gaps = 15/208 (7%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ + GV+ + +N++I + A + EM+++ C P+E T +L
Sbjct: 863 EAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLL 922
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ ++E + +E+ G + + Y +++ KS R + A L + + S
Sbjct: 923 DAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFS 982
Query: 126 NIHQVTGQMIK-----GEFDDESNW--QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
G ++ G +D N +M+EY K NC YN LL G
Sbjct: 983 PTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGC-KANCT-------IYNILLNGHRIAG 1034
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
E+ + + +G+ P++ + ++
Sbjct: 1035 NTEKVCHLFQDMVDQGINPDIKSYTIII 1062
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E ++ + M + G+ N ++N++I + G+ EA K Y E+ PN T A+
Sbjct: 1107 EEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNAL 1166
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPS 92
+ Y +G D + + + G LP+
Sbjct: 1167 IRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/121 (18%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K C + M + G+ + S+ +I+ + G+ + + + ++ ++ +P+ T
Sbjct: 1034 GNTEKVCH-LFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLIT 1092
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ + ++E+ F E++ GI+P++ Y L+ K+ + +A + +E+
Sbjct: 1093 YNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELL 1152
Query: 121 T 121
T
Sbjct: 1153 T 1153
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 1/200 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +RM E + + +FN +I + G FE+A + EM P+ T A++ C
Sbjct: 554 VYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLC 613
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG V+ +++ + + G+ P+V+ Y L+ KS R ++A L+EM ++
Sbjct: 614 KAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSI 673
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
G ++ ++ V +L G+ YN L++ LW G E+A VL+E
Sbjct: 674 TYGSLVYALCRASRTDDALQLV-SELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEE 732
Query: 190 ATKRGLFPELFRHNKLVWSV 209
+G P++ +N L+ S+
Sbjct: 733 MVGKGHHPDVVTYNTLIDSL 752
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 15/206 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + E G + ++N +I++ + G EEA + + +M C PN T +++ C
Sbjct: 238 LFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLC 297
Query: 70 FAGLVDESKEQFQEI--KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN--RIS 125
G +DE++E QE+ KS +LP+++ Y L K + +A L+ + R+S
Sbjct: 298 KVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVS 357
Query: 126 NIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I G+ D+ + VFD + GY + YNAL+ L
Sbjct: 358 PDTVTFSTLIDGLCKCGQIDEACS------VFDDMIAGGYVPNVITYNALVNGLCKADKM 411
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
ERA +++ +G+ P++ ++ LV
Sbjct: 412 ERAHAMIESMVDKGVTPDVITYSVLV 437
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 23/222 (10%)
Query: 2 GLYKECQA-----ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME-KVR-- 53
GL+K Q +L M G + ++N +I++ + G EEA + + +M +V
Sbjct: 716 GLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRC 775
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEI--KSSGILPSVMCYCMLLAVYAKSNRWDD 111
C PN T +++ C G +DE++E QE+ KS +LP+++ Y L K + +
Sbjct: 776 CVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAE 835
Query: 112 AYGLLDEMHTN--RISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGM 164
A L+ + R+S +I G+ D+ N VFD + GY +
Sbjct: 836 ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN------VFDDMIAGGYVPNV 889
Query: 165 RFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
YN L+ L ERA +++ +G+ P++ ++ LV
Sbjct: 890 VTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLV 931
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 96/230 (41%), Gaps = 31/230 (13%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
A++ M + GV + +++ +++AF + R +EA++ M C PN T +++
Sbjct: 415 HAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDG 474
Query: 68 YCFAGLVDESKEQFQEIK-SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM------- 119
C + E+ + F ++ G++P + YC L+ ++ R A LLD M
Sbjct: 475 LCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYA 534
Query: 120 ---------HTNRISNIHQVTGQMIKGEFDDE--------------SNWQMVEYVFDKLN 156
+S QV +M++ E + N++ +F+++
Sbjct: 535 FNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMV 594
Query: 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ + + AL++ L G E A +LD G+ P + +N LV
Sbjct: 595 AKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALV 644
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + IL M GV N ++NA++ + GR EEA + EM C P+ T
Sbjct: 615 AGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSIT 674
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ C A D++ + E+KS G P + Y +L+ KS + + A +L+EM
Sbjct: 675 YGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEM 733
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 8/207 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ M G N ++NA++ + + E A M P+ T
Sbjct: 374 GQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITY 433
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C A VDE+ E + S G P+V+ + ++ KS+R +A+ + D+M
Sbjct: 434 SVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMAL 493
Query: 122 NRISNIHQVT-GQMIKGEFDDESNWQMVEYVFDKL-NCEGYGLGMRFYNALLEALWCLGL 179
++T +I G F Q E + D + + + Y +N + L LG
Sbjct: 494 KHGLVPDKITYCTLIDGLFRTGRAGQ-AEALLDAMPDPDTYA-----FNCCINGLSKLGD 547
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
RA +V + + L P+ N L+
Sbjct: 548 VSRALQVYNRMLELELVPDKVTFNILI 574
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 82/175 (46%), Gaps = 10/175 (5%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
V+ ++ +F+ +I+ + G+ +EA + +M PN T A+++ C A ++ +
Sbjct: 356 VSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAH 415
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----TNRISNIHQVTGQM 134
+ + G+ P V+ Y +L+ + K++R D+A LL M T + + + +
Sbjct: 416 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGL 475
Query: 135 IKGEFDDESNWQMVEYVFDKLNCE-GYGLGMRFYNALLEALWCLGLRERAARVLD 188
K + E+ +QM FD + + G Y L++ L+ G +A +LD
Sbjct: 476 CKSDRSGEA-FQM----FDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLD 525
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 13/214 (6%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD--PNE 58
G +E + + MS N +++ +I + GR +EA + EM + CD PN
Sbjct: 264 AGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNI 323
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSG--ILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
T + L C + E+ E + ++ + P + + L+ K + D+A +
Sbjct: 324 ITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVF 383
Query: 117 DEM----HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
D+M + + + + + K + E M+E + DK G + Y+ L++
Sbjct: 384 DDMIAGGYVPNVITYNALVNGLCKAD-KMERAHAMIESMVDK----GVTPDVITYSVLVD 438
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
A + A +L RG P + N ++
Sbjct: 439 AFCKASRVDEALELLHGMASRGCTPNVVTFNSII 472
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/191 (18%), Positives = 84/191 (43%), Gaps = 4/191 (2%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEME--KVRCDPNERTLEAVLSVYCFAGLVDE 76
V N ++N+ ++ + EA + + +R P+ T ++ C G DE
Sbjct: 813 VLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDE 872
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136
+ F ++ + G +P+V+ Y +L+ K+++ + A+ +++ M ++ +T ++
Sbjct: 873 ACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTP-DVITYSVLV 931
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT-KRGL 195
F S+ + + G + +N++++ L A ++ D+ T K GL
Sbjct: 932 DAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGL 991
Query: 196 FPELFRHNKLV 206
P+ + L+
Sbjct: 992 APDKITYCTLI 1002
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 90/211 (42%), Gaps = 22/211 (10%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
V+ ++ +F+ +I+ + G+ +EA + +M PN T +++ C ++ +
Sbjct: 850 VSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAH 909
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----TNRISNIHQVTGQM 134
+ + G+ P V+ Y +L+ + K++ D+A LL M T + + + +
Sbjct: 910 AMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGL 969
Query: 135 IKGEFDDESNWQMVEYVFDKLNCE-GYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
K + E+ +QM FD + + G Y L++ L+ G +A +LD
Sbjct: 970 CKSDQSGEA-FQM----FDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPD- 1023
Query: 194 GLFPELFRHNKLV--------WSVDVHRMWE 216
P+ + N + S +HRM E
Sbjct: 1024 ---PDTYAFNCCINGLSKLGDVSRALHRMLE 1051
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M G N ++N ++ + + E A M P+ T
Sbjct: 868 GQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITY 927
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +C A VDE+ E + S G P+V+ + ++ KS++ +A+ + D+M
Sbjct: 928 SVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDM 985
>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 88/186 (47%), Gaps = 9/186 (4%)
Query: 28 AVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87
++ + + G+ +EA+ + M+ C+P + A++S+ +G D++ + + ++
Sbjct: 81 GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDR 140
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RISNIHQVTGQMIKGEFDDES 143
GI P V + + + + +++R A LL+ M + + V G + F DE
Sbjct: 141 GITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEG 200
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+++ F K+ G L + +N LL L G + ++LD+ KRG+ P LF +N
Sbjct: 201 -YEL----FGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYN 255
Query: 204 KLVWSV 209
+ +
Sbjct: 256 FFIQGL 261
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 101/234 (43%), Gaps = 39/234 (16%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL M ++GV + ++N+++ + ++E+ ++ Y M + C PN T +L C
Sbjct: 483 ILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLC 542
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+D++ +E+K+ + P + + L+ + K+ D AY L +M + +
Sbjct: 543 RYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCST 602
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDK-----LNCEGY---------------GLGMRFYNA 169
T +I F ++ N M E +F + L +GY LG +F
Sbjct: 603 PTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLE 662
Query: 170 LLE------------ALWCLGLRER---AARVLDEATKRGLFPE----LFRHNK 204
++E + CL + +R AA ++ ++GL PE +F H+K
Sbjct: 663 MMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVNTIFDHDK 716
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 59/136 (43%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + ++ M G + +FN +I + + E A++ M DP+ T
Sbjct: 440 GCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTY 499
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L+ C ++ E ++ + G P++ + +LL + ++ D A GLL+EM
Sbjct: 500 NSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKN 559
Query: 122 NRISNIHQVTGQMIKG 137
++ G +I G
Sbjct: 560 KSVNPDAVTFGTLIDG 575
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 6/211 (2%)
Query: 1 GGLYKE-----CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
GG Y+E + +M SGV+ +FN ++ + G +E K ++ K
Sbjct: 189 GGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVL 248
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
PN T + C G +D + + G P V+ Y L+ K++++ +A
Sbjct: 249 PNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVY 308
Query: 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
L ++ + +I G + Q+ E + G+ Y +L++ L
Sbjct: 309 LGKLVNEGLEPDSFTYNTLIAG-YCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLC 367
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G RA + +EA +G+ P + +N L+
Sbjct: 368 HEGETNRALALFNEALGKGIKPNVILYNTLI 398
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 1/209 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG+ + + IL +G + ++ ++I+ G A+ + E PN
Sbjct: 334 GGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVIL 393
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ GL+ E+ + E+ G++P V + +L+ K DA GL+ M
Sbjct: 394 YNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMI 453
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +I G + + + + D + G + YN+LL L
Sbjct: 454 SKGYFPDIFTFNILIHG-YSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKY 512
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSV 209
E ++G P LF N L+ S+
Sbjct: 513 EDVMETYKTMVEKGCAPNLFTFNILLESL 541
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E+ V + ++ +I A + G +E + EME+ C P+ T V+ C AG
Sbjct: 227 MLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGE 286
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
VDE+ E + + G++ V Y +L+ + K R +A +L+EM + + H
Sbjct: 287 VDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTA 346
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G F + + V +++ G L + YNAL++ + G E+A +L+E
Sbjct: 347 LIDG-FMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMV 405
Query: 194 GLFPELFRHNKLV 206
G+ P+ +N ++
Sbjct: 406 GIKPDTQTYNNMI 418
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + M GV N+ + +I+ Q GRF+EA++ M+K P+
Sbjct: 460 GSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCY 519
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+V+ C + ++E+K+ E+ G+ P+V Y L+ Y KS A EM
Sbjct: 520 NSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLG 579
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I+ V +I G + E + +F + +R Y+AL+ L G +
Sbjct: 580 CGIAPNDVVCTALIDG-YCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQ 638
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +L E ++GL P++F +N ++
Sbjct: 639 GAMELLSEFLEKGLVPDVFTYNSII 663
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 89/203 (43%), Gaps = 5/203 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS E G+ + ++N++I F + G +A + + M + PN T A+++ C
Sbjct: 643 LLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLC 702
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG ++ ++E F I G+ + + Y ++ Y KS A+ L DEM +
Sbjct: 703 KAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSF 762
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I G E N + +F + +G+ NAL++ G A ++L++
Sbjct: 763 VYSALIDG-CRKEGNTEKALSLFLESVQKGFA-STSSLNALMDGFCKSGKVIEANQLLED 820
Query: 190 ATKRGLFPELFRHNKLVWSVDVH 212
+ + P+ H +D H
Sbjct: 821 MVDKHVKPD---HVTYTILIDYH 840
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 86/191 (45%), Gaps = 2/191 (1%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
+ G A S S NA+++ F + G+ EA + +M P+ T ++ +C G +
Sbjct: 789 QKGFASTS-SLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLK 847
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
E+++ F +++ ++P+ + Y LL+ Y + R + + L DEM I MI
Sbjct: 848 EAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMI 907
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ + + ++ V D L +G + + L++ L +VL++ ++GL
Sbjct: 908 DAHLKEGDHVKTLKLVDDMLK-KGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGL 966
Query: 196 FPELFRHNKLV 206
L + LV
Sbjct: 967 NLSLATCSTLV 977
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 86/201 (42%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L M + V + ++ +I+ + G +EA + +V+M+K PN T A+L
Sbjct: 813 EANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALL 872
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S Y AG E F E+ + I P + + +++ + K L+D+M +
Sbjct: 873 SGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDM-LKKGG 931
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
N+ + ++ + + V V +K+ +G L + + L+ G + AAR
Sbjct: 932 NVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAAR 991
Query: 186 VLDEATKRGLFPELFRHNKLV 206
VL + P+ N L+
Sbjct: 992 VLKSMVRFKWVPDSTELNDLI 1012
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 82/193 (42%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M GV N ++NA+++ + G E+A EM V P+ +T ++ Y
Sbjct: 367 MLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQN 426
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
K+ E+K S ++P+ M++ + +DA + + M + + +
Sbjct: 427 TSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTT 486
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+IKG E +Q + ++ +G + YN+++ L E A L E +R
Sbjct: 487 LIKGHV-QEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIER 545
Query: 194 GLFPELFRHNKLV 206
GL P ++ + L+
Sbjct: 546 GLKPNVYTYGALI 558
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 1/150 (0%)
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T +++ + AG E K E++ G PS++ Y +++ ++ D+A+ L M
Sbjct: 238 TYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLM 297
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +I G F + + + +++ +G G Y AL++ G
Sbjct: 298 DKKGLVADVFTYSILIDG-FGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGD 356
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSV 209
A RV +E RG+ LF +N LV V
Sbjct: 357 SGEAFRVKEEMLARGVKLNLFTYNALVKGV 386
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 94/202 (46%), Gaps = 11/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M G+ N ++N +I G+ +EA+ +M +PN T +++ +C
Sbjct: 250 VFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFC 309
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RIS 125
V+E+ F +++ G+ P+ M Y L+ Y K R +DA+ L + M +S
Sbjct: 310 KNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVS 369
Query: 126 NIH-QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + G KG+ + M E V KL+ + + YN L+++L G +A
Sbjct: 370 TYNCLIAGLCRKGDVKAARSL-MNEMVSKKLSAD-----VVTYNILIDSLCKKGESRKAV 423
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++LDE ++GL P +N L+
Sbjct: 424 KLLDEMFEKGLNPSHVTYNTLM 445
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 4/192 (2%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKA---YVEMEKVRCDPNERTLEAVLSVYCFAGLV 74
GV+ N ++N +I+ + + GR + KA EM PNE T ++ +C V
Sbjct: 185 GVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENV 244
Query: 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134
+ F E++ G+ P+V+ Y +L+ + D+A L D+M ++ + + VT +
Sbjct: 245 SGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEP-NVVTHNV 303
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
+ F +F+ + +G Y L++A G E A + + RG
Sbjct: 304 LINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRG 363
Query: 195 LFPELFRHNKLV 206
+FPE+ +N L+
Sbjct: 364 IFPEVSTYNCLI 375
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 4/165 (2%)
Query: 45 AYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYA 104
Y EM K + + N + V++ C G ++ + + +++K G+ P+V+ Y L+ Y
Sbjct: 142 VYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYC 201
Query: 105 KSNRWDDAY---GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
K R Y +L EM I ++VT ++ F + N VF ++ +G
Sbjct: 202 KMGRIGKMYKADAILKEMVAKGICP-NEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLR 260
Query: 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ YN L+ L G + A + D+ L P + HN L+
Sbjct: 261 PNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLI 305
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K +++++ M ++ + ++N +I++ + G +A+K EM + +P+ T
Sbjct: 382 GDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTY 441
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ YC G + + ++ G +V+ + +L+ + R +DA GLL+EM
Sbjct: 442 NTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEM 499
>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
Length = 646
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 63/107 (58%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G + + S+N +I +F + GR EEA+K + E+E C P+ + ++++ G
Sbjct: 462 KMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNG 521
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+DE+ +F+E++ G+ P V+ Y L+ + K+++ + A L DEM
Sbjct: 522 DIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEM 568
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 92/198 (46%), Gaps = 1/198 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +LS++ E ++ ++ +N V+ A + + + Y +M++ P+ +
Sbjct: 415 AGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFS 474
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S + AG V+E+ + F+E+++S P ++ + L+ K+ D+A+ EM
Sbjct: 475 YNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR 534
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+S VT + F +M +FD++ EG + YN LL+ L G
Sbjct: 535 EEGLSP-DVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRT 593
Query: 181 ERAARVLDEATKRGLFPE 198
A + + ++GL P+
Sbjct: 594 AEAVDLYAKLKQQGLTPD 611
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/189 (19%), Positives = 84/189 (44%), Gaps = 9/189 (4%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
+ D++ +++E+ G+ EA+ ++ + R + VLS + + +
Sbjct: 401 DRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLY 460
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR----ISNIHQVTGQMIKG 137
+++K G P + Y +L++ + ++ R ++A + +E+ + I + + + + K
Sbjct: 461 EKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKN 520
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
DE++ + F ++ EG + Y+ L+E E A R+ DE G P
Sbjct: 521 GDIDEAHMR-----FKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSP 575
Query: 198 ELFRHNKLV 206
+ +N L+
Sbjct: 576 NIVTYNILL 584
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +++A + + ++ + +M++ C+P+E T ++ + G DES FQE+
Sbjct: 262 AYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEM 321
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G P+++ Y ++ A + D L +M
Sbjct: 322 TEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKM 356
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E M E G++ + +++ +IE F + + E A + + EM C PN T
Sbjct: 520 NGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVT 579
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99
+L +G E+ + + ++K G+ P + Y +L
Sbjct: 580 YNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 618
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+AIL M GV + + N +I F G E + + ++K N T + +L
Sbjct: 178 RAILDDMERCGVRGSISTINILIGIFGGGADVE---RCFDLVKKWDLQMNCYTYKCLLQA 234
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI--- 124
+ + +++ E + E++ G + Y MLL AK N+ D Y + +M
Sbjct: 235 HLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPD 294
Query: 125 ----SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ + ++TG++ K DES +F ++ +GY + YN +++AL
Sbjct: 295 EYTYTIMIRMTGKIGKA---DESLT-----LFQEMTEKGYTPNLIAYNTMIQAL 340
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + RM G+ + +F+A++ A + + + EME + PN T
Sbjct: 208 GFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTY 267
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ V G +DE+ + + G P V+ Y +L+ + + DDA L +M +
Sbjct: 268 TICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKS 327
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +VT + +F D + VE ++ ++ +GY + + L+ AL G
Sbjct: 328 SS-HKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRIN 386
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +LD K+G+ P L +N L+
Sbjct: 387 EAFDLLDTMRKQGVLPNLHTYNTLI 411
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 68/119 (57%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +A+ + + SG+A +S ++N +++ + + G+ +EAIK EM KV+C+P+ +
Sbjct: 488 GRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVI 547
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ AG V+E+ + F ++ + P+V+ Y +LLA K + A L + M+
Sbjct: 548 NSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMN 606
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+F +I+ + GR ++A + + M C PN +++ Y G VD + E F+ +
Sbjct: 897 TFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRM 956
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
GI P + Y +L+ + + R DDA +++ + MI G +
Sbjct: 957 VKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRT 1016
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + +F ++ G + YN+L+ L +G+ E A ++ +E GL P +F +N
Sbjct: 1017 EEALS-LFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNA 1075
Query: 205 LV 206
L+
Sbjct: 1076 LI 1077
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 88/201 (43%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + ++M S + ++ +++ F G ++ K + EME P+ T ++
Sbjct: 317 DAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILV 376
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ C AG ++E+ + ++ G+LP++ Y L++ ++NR DDA L M + +
Sbjct: 377 NALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVE 436
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+I + +E F+K+ G + NA L +L +G A
Sbjct: 437 PTAYTYILLIDYHGKSGHPGKALE-TFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKA 495
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ +E GL P+ +N ++
Sbjct: 496 MFNELKSSGLAPDSVTYNMMM 516
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 93/244 (38%), Gaps = 42/244 (17%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +L M + GV N ++N +I + R ++A+ + ME + +P T
Sbjct: 382 AGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYT 441
Query: 61 LEAVL---------------------------------SVYCFA--GLVDESKEQFQEIK 85
++ S+Y A G + E+K F E+K
Sbjct: 442 YILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELK 501
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD---E 142
SSG+ P + Y M++ Y+K + D+A LL EM + V +I + E
Sbjct: 502 SSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVE 561
Query: 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
WQM F ++ + YN LL L G ++A ++ + G P
Sbjct: 562 EAWQM----FCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITF 617
Query: 203 NKLV 206
N L+
Sbjct: 618 NTLL 621
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 11/196 (5%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E GV +N +I+ F + E A + EM+ C P+ T +++ + +G ++
Sbjct: 783 ELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKIN 842
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
E + + E+ + G P+ + Y M+++ KSNR D A L + + S G +I
Sbjct: 843 ELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLI 902
Query: 136 -----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
G DD +FD + G YN L+ LG + A
Sbjct: 903 DGLLKSGRLDDAHE------MFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRM 956
Query: 191 TKRGLFPELFRHNKLV 206
K G+ P+L + LV
Sbjct: 957 VKEGIRPDLKSYTILV 972
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 11/208 (5%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G N+ ++N VI + R ++A+ Y + P T ++ +G
Sbjct: 851 MLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGR 910
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-----SNIH 128
+D++ E F + G P+ Y +L+ Y K D A M I S
Sbjct: 911 LDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTI 970
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
V I G DD ++ F+KL G + YN ++ L E A +
Sbjct: 971 LVDILCIAGRVDDALHY------FEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFH 1024
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWE 216
E RG+ P+L+ +N L+ ++ + M E
Sbjct: 1025 EMQNRGIVPDLYTYNSLILNLGIVGMIE 1052
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 57/107 (53%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
++ ++G+ + ++N +I + R EEA+ + EM+ P+ T +++ G
Sbjct: 990 KLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVG 1049
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++E+ + ++E++ G+ P+V Y L+ Y S + AYG+ +M
Sbjct: 1050 MIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKM 1096
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E + RM E +A ++N ++ + G+ ++A++ + M C PN T
Sbjct: 557 AGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTIT 616
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L C VD + + F ++ + P V+ + ++ + K N+ +A L +M
Sbjct: 617 FNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQM 675
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +LS MS+ + N++I+ + GR EEA + + ME++ P T
Sbjct: 523 GQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTY 582
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ G + ++ + F+ + G P+ + + LL K++ D A + +M T
Sbjct: 583 NILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTT 642
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Query: 1 GGLYKECQ-----AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
GL KE Q + M+ G + N+ +FN +++ + + A+K + +M + C
Sbjct: 587 AGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCR 646
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
P+ T ++ + + + F ++K + P + C LL KS + +DA+ +
Sbjct: 647 PDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL-LRPDHVTLCTLLPGVIKSGQIEDAFRI 705
Query: 116 LDEMHTNRISNIHQ 129
++ SNI +
Sbjct: 706 TEDFFYQVGSNIDR 719
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 79/188 (42%), Gaps = 22/188 (11%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + RN D++ + ++ G +A A +M + N + ++
Sbjct: 146 VFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLL 205
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIH 128
+G E+ E ++ + S G+ PS+ + L+ K GLL+EM + + NI+
Sbjct: 206 QSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIY 265
Query: 129 ------QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+V G+ G+ D+ + +++ +G G + Y L++AL
Sbjct: 266 TYTICIRVLGR--DGKIDEAYR------IMKRMDDDGCGPDVVTYTVLIDALC------- 310
Query: 183 AARVLDEA 190
AR LD+A
Sbjct: 311 TARKLDDA 318
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 2/207 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E M G ++ N +I + GR ++A+K + EME +RC P+ T
Sbjct: 280 AGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVT 339
Query: 61 LEAVL-SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +++ E F+ +K SGI PS Y +L+ + K+NR + A LL+EM
Sbjct: 340 YNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEM 399
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+I + + +F +L R Y +++ L G
Sbjct: 400 DEKGFPPCPAAYCSLIDA-LGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGR 458
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A + DE K G P+++ +N L+
Sbjct: 459 LDDAINMFDEMNKLGCAPDVYAYNALM 485
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M E G+ + + +I F + A+ + EM C P+ T ++
Sbjct: 219 LLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLG 278
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +DE+ F E++ G P + ++ K+ R DDA L EM T R
Sbjct: 279 KAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVV 338
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+IK F+ +S V F+++ G Y+ L++ E+A +L+E
Sbjct: 339 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 398
Query: 190 ATKRGLFP 197
++G P
Sbjct: 399 MDEKGFPP 406
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 10/213 (4%)
Query: 23 SDSFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
+ ++N++I G++E+ + Y EM + C P+ T A++S +C G D + +
Sbjct: 161 AQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLL 220
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQVTGQMIKGEFD 140
E+K G+ P+ Y ML+A++ K N A L +EM H ++ T ++I+G
Sbjct: 221 NEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYT-ELIRG-LG 278
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
+ F ++ EG F N ++ L G + A ++ E P +
Sbjct: 279 KAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVV 338
Query: 201 RHNKLVWSVDVHRMWEGGAYTA-ISVWLNKMYE 232
+N ++ + ++E + + + W +M E
Sbjct: 339 TYNTIIKA-----LFESKSRASEVPSWFERMKE 366
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 15/218 (6%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + RM ESG++ +S +++ +I+ F + R E+A+ EM++ P +++
Sbjct: 356 EVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLI 415
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
A D + E FQE+K + S Y +++ K+ R DDA + DEM N++
Sbjct: 416 DALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM--NKLG 473
Query: 126 NIHQV-------TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
V +G G D+ + ++ G + YN +L L G
Sbjct: 474 CAPDVYAYNALMSGLARTGMLDEALS------TMRRMQEHGCIPDINSYNIILNGLAKTG 527
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
RA +L + + P++ +N ++ ++ M+E
Sbjct: 528 GPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFE 565
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 54/112 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M++ G A + ++NA++ + G +EA+ M++ C P+ + +L+
Sbjct: 465 MFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLA 524
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
G + E +K S + P V+ Y +L + + +++A L+ EM+T
Sbjct: 525 KTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNT 576
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/200 (18%), Positives = 78/200 (39%), Gaps = 36/200 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEA-----------------------------------FR 34
+L M E G ++ ++I+A
Sbjct: 395 LLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLG 454
Query: 35 QGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM 94
+ GR ++AI + EM K+ C P+ A++S G++DE+ + ++ G +P +
Sbjct: 455 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDIN 514
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
Y ++L AK+ A +L M + + V+ + G ++ + +
Sbjct: 515 SYNIILNGLAKTGGPHRAMEMLSNMKQSTVRP-DVVSYNTVLGALSHAGMFEEASKLMKE 573
Query: 155 LNCEGYGLGMRFYNALLEAL 174
+N G+ + Y+++LEA+
Sbjct: 574 MNTLGFEYDLITYSSILEAI 593
>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
Length = 1095
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 1/198 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM E + + S+N +I F G+ AI + +M + P+ T A++ YC
Sbjct: 321 LLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYC 380
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G DE++ E++ +G+ PS + Y LL Y K ++ A L+ + + IS
Sbjct: 381 RNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRT 440
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ +I G F + + + +G + Y+AL+ + +G+ +L
Sbjct: 441 MYTILIDG-FCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSR 499
Query: 190 ATKRGLFPELFRHNKLVW 207
K G+ P + LV+
Sbjct: 500 MQKSGVLPNNVLYTTLVF 517
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/225 (18%), Positives = 96/225 (42%), Gaps = 17/225 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYV-------------- 47
GL + L +M GV ++ +F+ +I+AF + + A++ +
Sbjct: 839 GLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFEL 898
Query: 48 --EMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
+M+ + P+E +++ C G V+E+ F I +G++P++ + L+ K
Sbjct: 899 KEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCK 958
Query: 106 SNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR 165
+ DDA+ L M + + +I G + + ++ +++++ +G +
Sbjct: 959 EFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALD-LYEEMKSKGLLPNIT 1017
Query: 166 FYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVD 210
Y L A++ G + ++L + RG+ P L W ++
Sbjct: 1018 TYITLTGAMYATGTMQDGEKLLKDIEDRGIVPSYKHPESLEWRME 1062
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K IL M ++G+ + ++N +I+ + R A M +V P+E +
Sbjct: 278 GRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSY 337
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + G ++ + F ++ + PSV Y L+ Y ++ R D+A +L EM
Sbjct: 338 NTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQI 397
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ ++ G + S + L + Y L++ LG
Sbjct: 398 TGVRPSELTYSALLNG-YCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVS 456
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A ++L G+ P++ ++ L+
Sbjct: 457 KAKQILKCMLADGIDPDVITYSALI 481
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + ILSRM +SGV N+ + ++ F + G +EA+K +V++ + N
Sbjct: 488 GMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIH 547
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+L + G++ E+++ Q + I V + ++ Y + +A+ + D M
Sbjct: 548 NALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVR 607
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ G +++G Q E++ L + + + N LL + G +
Sbjct: 608 HGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLE-KACAIDEKTLNTLLVGICKHGTLD 666
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + ++ R + P+ + + L+
Sbjct: 667 EALDLCEKMVTRNILPDTYTYTILL 691
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 85/202 (42%), Gaps = 2/202 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ M G + ++ +++ QGG +A + V + + C +E+TL +L
Sbjct: 597 EAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLL 656
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G +DE+ + +++ + ILP Y +LL + K + A LL M +
Sbjct: 657 VGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLV 716
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC-EGYGLGMRFYNALLEALWCLGLRERAA 184
++ G +E + Y+F ++ C EG YN+++ G
Sbjct: 717 PDTIAYTCLLNG-LVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIE 775
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
R++ + ++P +N L+
Sbjct: 776 RLMRNMHENEVYPSSASYNILM 797
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ + ++ N + +I+ F Q G +A + M DP+ T A+++ C
Sbjct: 426 LIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMC 485
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
G++ E+KE ++ SG+LP+ + Y L+ + K+ +A
Sbjct: 486 KMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEA 528
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 2/180 (1%)
Query: 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
N V+ + G+ +A +M+ R PN T +L+ Y G + +++
Sbjct: 234 NIVLNSLCTQGKLSKAESMLQKMKNCRL-PNAVTYNTILNWYVKKGRCKSALRILDDMEK 292
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
+GI + Y +++ K R AY LL M ++ +I G F E
Sbjct: 293 NGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFF-GEGKIN 351
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ Y+F+++ + + Y AL++ G + A RVL E G+ P ++ L+
Sbjct: 352 LAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALL 411
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 15/222 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + IL M G+ + +++A+I + G E + M+K PN
Sbjct: 453 GEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLY 512
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C AG E+ + F +I SG++ + + + LL + + +A M
Sbjct: 513 TTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSR 572
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG--- 178
+IS + I + N V+D + G+ + Y +LL L C G
Sbjct: 573 MKIS-FDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGL-CQGGHL 630
Query: 179 ---------LRERAARVLDEATKRGLFPELFRHNKLVWSVDV 211
L E+A + DE T L + +H L ++D+
Sbjct: 631 VQAKEFMVYLLEKACAI-DEKTLNTLLVGICKHGTLDEALDL 671
>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Glycine max]
Length = 479
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 108/234 (46%), Gaps = 22/234 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y+E M E G+ + S N +I+A + + A++ + EM C P+ T
Sbjct: 141 GFYRE-------MRELGIPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYT 193
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ C G + E+KE F+E++ G SV+ Y L+ +SN D+A GLL+EM
Sbjct: 194 YGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMK 253
Query: 121 TNRI-SNIHQVTGQM---IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N I N+ + M KG ++ Q++E V DK + + M Y+ L+ L
Sbjct: 254 RNDIEPNVFTYSSLMDGLCKGGHSSQA-MQLLE-VMDK---KHHLPNMVTYSTLINGLCK 308
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
A +LD +GL P + K++ + G+Y + ++++M
Sbjct: 309 ERKLREAVEILDRMRIQGLKPNAGLYGKIISG-----LCAAGSYQEAANFIDEM 357
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 19/221 (8%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L M + + N +++++++ +GG +A++ M+K PN T ++
Sbjct: 244 EAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLI 303
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----H 120
+ C + E+ E ++ G+ P+ Y +++ + + +A +DEM
Sbjct: 304 NGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGIS 363
Query: 121 TNRIS-----NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
NR S +H + Q + D +Q+ Y+ + C + + ++ L++
Sbjct: 364 PNRASWSLHVRMHNMVVQGLCNNVDPPRAFQL--YLSMRTRC--ISVEIDTFDCLVKCFC 419
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
G +AAR+L+E G P+ + VW+V + +W+
Sbjct: 420 KRGDLHKAARILEEMVLDGCIPD-----EGVWNVVIGGLWD 455
>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
Length = 883
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 8/201 (3%)
Query: 10 ILSRMS-ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ +MS E NS +++ +I + GR EEA + EM + C P+ RT ++
Sbjct: 251 VFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAK 310
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G+ D++ + E+ + +P+V Y +L+ + + ++A G+ +M + +
Sbjct: 311 CDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGI 370
Query: 129 QVTGQMIKGEFDDE---SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+I G + S +Q++ V +K NC+ +R YN L+E L + +A
Sbjct: 371 ITFNALINGYCKEGWVVSAFQLLS-VMEKGNCKP---NIRTYNELMEGLCRVSKSYKAFL 426
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+L GL P+ +N LV
Sbjct: 427 LLRRVVDNGLLPDRVTYNILV 447
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 61/132 (46%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A+L +M + G+ + + +IE + G ++K M++ C PN T ++
Sbjct: 563 EANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIII 622
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ C G V+E++ + S G+ P+ Y +L+ + K+ R D A+ ++ M N
Sbjct: 623 NGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQ 682
Query: 126 NIHQVTGQMIKG 137
+ ++ G
Sbjct: 683 PNSHIYSALLSG 694
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 34/229 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E + M E G ++ ++ +I+A G ++A+K EM C PN T
Sbjct: 278 AGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHT 337
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G ++E+ F+++ G+ P ++ + L+ Y K A+ LL M
Sbjct: 338 YTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVME 397
Query: 121 TN-----------------RISNIHQ-----------------VTGQMIKGEFDDESNWQ 146
R+S ++ VT ++ F E
Sbjct: 398 KGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLN 457
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
M +F+ +N G + AL++ L LG E+A +L K+G+
Sbjct: 458 MAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGI 506
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 72/192 (37%), Gaps = 22/192 (11%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM ++G + N ++ +I GR EEA M PN T ++ +
Sbjct: 602 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 661
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +D + + + +G P+ Y LL+ + SN A L
Sbjct: 662 KAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARAL-------------S 708
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR---FYNALLEALWCLGLRERAARV 186
TG + E N + L+ E G+ YN L+ L G A ++
Sbjct: 709 STGDLDARSLSSEENDN------NCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQL 762
Query: 187 LDEATKRGLFPE 198
+ K GLFP+
Sbjct: 763 TQDMVKHGLFPD 774
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 25/227 (11%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + IL MS GV+ N ++ +++A + GR + A + M K C PN
Sbjct: 629 GRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 688
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY-------CMLLAVYAKSNRWDDAYG 114
A+LS + + ++ + S+G L + C+ + +D Y
Sbjct: 689 SALLSGFVLSNTAIGAR----ALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYN 744
Query: 115 LL--DEMHTNRISNIHQVTGQMIK-GEFDDESNWQMVEYVFDKL---NCEGYG---LGMR 165
L RI Q+T M+K G F D++ ++E+ NC + L +
Sbjct: 745 FLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLVLDNK 804
Query: 166 FYNALLEALWCL-GLRERAARVLDEATKRGLFPELFRHNKLVWSVDV 211
F + W + GLR + EA K L +L RH + V+V
Sbjct: 805 FVPSFASYCWVIHGLRNEGR--VQEAQK--LVSDLVRHTGIEEEVEV 847
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 88/240 (36%), Gaps = 36/240 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT- 60
G +E + +M + G+ +FNA+I + + G A + MEK C PN RT
Sbjct: 349 GKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTY 408
Query: 61 ---LEAVLSV-------------------------------YCFAGLVDESKEQFQEIKS 86
+E + V +C G ++ + F + S
Sbjct: 409 NELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNS 468
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
+G+ P + L+ K R + A G+L M IS + +VT + +
Sbjct: 469 AGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGIS-LDEVTFTALIDGHCKIGKAK 527
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V ++F+ + +N L+AL A +L + K GL P + H L+
Sbjct: 528 DVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILI 587
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 83/197 (42%), Gaps = 3/197 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ IL M + G++ + +F A+I+ + G+ ++ + M + RC T
Sbjct: 489 GRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTF 548
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
L ++E+ ++ G++PSV+ + +L+ + ++ + +L+ M
Sbjct: 549 NCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQ 608
Query: 122 NRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
S N++ T +I + + E + ++ G Y L++A G
Sbjct: 609 AGCSPNVYTYT--IIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 666
Query: 181 ERAARVLDEATKRGLFP 197
+RA +++ K G P
Sbjct: 667 DRAFQIVSTMVKNGCQP 683
>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 641
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 91/198 (45%), Gaps = 1/198 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L ++ E+G + +N ++ + Q G+ +A EM+KV C PN +
Sbjct: 260 GKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASF 319
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C +DE+ F E++ SG V+ Y L++ + K D AY +LD+M
Sbjct: 320 TILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDM-I 378
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + Q++ I + + + + +++ G + YN ++ + LG +
Sbjct: 379 QKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLK 438
Query: 182 RAARVLDEATKRGLFPEL 199
A R+ E GL P L
Sbjct: 439 EAVRLWGEMQAGGLNPGL 456
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 4/196 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ K+ +L M + G + F +++A + G +EA + +M +VR +PN R
Sbjct: 192 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDM-RVRFNPNLRHFT 250
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HT 121
++L +C G + E+K +IK +G P ++ Y LL YA++ + DA+ LL EM
Sbjct: 251 SLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKV 310
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N N T ++ F +F ++ G + Y L+ G +
Sbjct: 311 NCGPNAASFT--ILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTD 368
Query: 182 RAARVLDEATKRGLFP 197
+A +LD+ ++G P
Sbjct: 369 KAYEILDDMIQKGHDP 384
>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 550
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 7/208 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E +L M + V N ++N +I+A + G +A M + P+ T
Sbjct: 267 GQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTF 326
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S YC V E+++ F GI P V Y +L+ Y K+NR D+A L ++M+
Sbjct: 327 NTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNY 386
Query: 122 NRISNIHQVTGQMIKGEFDD---ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+++ +I G W++ + D G + YN +L+AL +
Sbjct: 387 KKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDG----GPSPNVITYNIMLDALCKIQ 442
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
L ++A + + +RGL P + +N L+
Sbjct: 443 LVDKAIELFNLMFERGLTPNVSSYNILI 470
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ ++M+ +A N +++++I+ + GR A + + + PN T +L
Sbjct: 376 EALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIML 435
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
C LVD++ E F + G+ P+V Y +L+ Y KS R D+A L +EMH
Sbjct: 436 DALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMH 490
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 56/111 (50%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ S + + G + N ++N +++A + ++AI+ + M + PN + +++ YC
Sbjct: 415 LFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYC 474
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +DE+ F+E+ ++P + Y L+ KS R A+ L + MH
Sbjct: 475 KSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMH 525
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + M E G+ N S+N +I + + R +EA+ + EM + P+ T ++ C
Sbjct: 450 LFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLC 509
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
+G + + E F + G V+ Y +L ++K
Sbjct: 510 KSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSK 545
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 76/185 (41%), Gaps = 7/185 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +I + G EA + +ME PN ++ C GLV E+++ + ++
Sbjct: 185 TYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDV 244
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
GI P V Y L+ + +W + LL +M +R N++ T ++ D
Sbjct: 245 VGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDM-VDRNVNLNVYTYNIL---IDALCK 300
Query: 145 WQMVEYVFDKLNC---EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
M+ D N G + +N L+ A ++ D + G+ P+++
Sbjct: 301 KGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWS 360
Query: 202 HNKLV 206
+N L+
Sbjct: 361 YNILI 365
>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE +L+ MS + V N +FN +I+ + G ++A M K +PN T
Sbjct: 243 GQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTY 302
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
+++ Y V+++K F I G+ P+V Y +++ K+ D+A L EMH
Sbjct: 303 TSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHL 362
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N ++ + G G D W ++ D++N G + YN+LL L
Sbjct: 363 KNMTPNTVTYSSLIDGLCKSGRISDV--WDLI----DEINNRGQPANIITYNSLLNGLCK 416
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
++A +L + G+ P++ + LV
Sbjct: 417 NHQVDKAIALLTKMKDEGIQPDMSTYTTLV 446
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 89/204 (43%), Gaps = 1/204 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + + + +S GV N S++ +I + +EA+K + EM PN T +++
Sbjct: 317 KAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLI 376
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C +G + + + EI + G +++ Y LL K+++ D A LL +M I
Sbjct: 377 DGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQ 436
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
++ G + + ++ L C+GY L +R Y ++ L G + A
Sbjct: 437 PDMSTYTTLVDG-LCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALS 495
Query: 186 VLDEATKRGLFPELFRHNKLVWSV 209
+L + G P+ + L+ ++
Sbjct: 496 LLSQMEDNGCMPDAVTYETLISAL 519
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 56/111 (50%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L++M + G+ + ++ +++ + GR ++A + Y ++ N R +++
Sbjct: 425 ALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGL 484
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G DE+ +++ +G +P + Y L++ K+N+ A LL EM
Sbjct: 485 CKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREM 535
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 76/182 (41%), Gaps = 3/182 (1%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+ A+I++F + +A Y EM + PN T +++ +C G + E+ E+
Sbjct: 197 YTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMS 256
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVTGQMIKGEFDDESN 144
+ + P+V + +L+ K A +L M + N+ T M E N
Sbjct: 257 LNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVN 316
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
++VF+ ++ G + Y+ ++ L + + A ++ E + + P ++
Sbjct: 317 K--AKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSS 374
Query: 205 LV 206
L+
Sbjct: 375 LI 376
Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 94/207 (45%), Gaps = 18/207 (8%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++++++ + G ++ + N ++ G+ +EA+ + + + R ++ + +++
Sbjct: 109 SMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGL 168
Query: 69 CFAGLVDESKEQFQEI-KSSGIL---PSVMCYCMLLAVYAKSNRWDDAYGLLDEM----- 119
C +G E++ Q + K G+L P V+ Y ++ + K DAY L EM
Sbjct: 169 CKSG---ETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKI 225
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ N ++ + G I G+ E+ + E + +N Y +N L++ L G
Sbjct: 226 YPNVVTFNSLIYGFCIVGQL-KEAVGLLNEMSLNNVNPNVYT-----FNILIDGLCKEGE 279
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
++A VL K+G+ P + + L+
Sbjct: 280 VKKATSVLSVMIKQGVEPNVVTYTSLM 306
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 2/207 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + E M G ++ N +I + GR ++A+K + EM ++C P+ T
Sbjct: 309 AGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVT 368
Query: 61 LEAVL-SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +++ + E F+ +K SGI PS Y +L+ + K+NR + A LL+EM
Sbjct: 369 YNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEM 428
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+I + + +F +L R Y +++ L G
Sbjct: 429 DEKGFPPCPAAYCSLIDA-LGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGR 487
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A + DE K G P ++ +N L+
Sbjct: 488 LDDAVNLFDEMNKLGCTPNVYAYNALM 514
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 18/229 (7%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNERTLEAVLSV 67
AI ++ + ++N++I G++E+ + Y EM + C P+ T A++S
Sbjct: 176 AIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISA 235
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTN 122
+C G D + E+K +G+ P+ Y ML+A++ K N A GL +EM +
Sbjct: 236 FCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPD 295
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ + G G FD+ N+ F ++ EG N ++ L G +
Sbjct: 296 VFTYTELIRGLGKAGRFDEAYNF------FHEMRREGCRPDTVVINNMINFLGKAGRLDD 349
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGA-YTAISVWLNKM 230
A ++ +E P + +N ++ + ++E + + IS W +M
Sbjct: 350 AVKLFEEMGTLQCIPSVVTYNTIIKA-----LFESKSRISEISSWFERM 393
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++G+ + + +I F + A+ + EM C P+ T ++
Sbjct: 248 LLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLG 307
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG DE+ F E++ G P + ++ K+ R DDA L +EM T +
Sbjct: 308 KAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVV 367
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+IK F+ +S + F+++ G Y+ L++ E+A +L+E
Sbjct: 368 TYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEE 427
Query: 190 ATKRGLFP 197
++G P
Sbjct: 428 MDEKGFPP 435
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 79/171 (46%), Gaps = 1/171 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y + + E+ + ++ + +I+ + GR ++A+ + EM K+ C PN A
Sbjct: 453 YDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNA 512
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++S AG++DE+ + ++ G +P + Y ++L AK+ A +L M +
Sbjct: 513 LMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSA 572
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
I V+ + G ++ + ++N G+ + Y+++LEA+
Sbjct: 573 IKP-DAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAI 622
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 9/218 (4%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + RM SG++ + +++ +I+ F + R E+A+ EM++ P +++
Sbjct: 385 EISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLI 444
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----T 121
A D + E FQE+K + S Y +++ K+ R DDA L DEM+ T
Sbjct: 445 DALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCT 504
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + + + DE+ M ++ G + YN +L L G
Sbjct: 505 PNVYAYNALMSGLARAGMLDEALTTM-----RRMQEHGCIPDINSYNIILNGLAKTGGPH 559
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
RA +L + + P+ +N ++ ++ ++E A
Sbjct: 560 RAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAA 597
>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
Length = 821
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + + G A + ++NA+++ F + G + EA+ EME C P+ T
Sbjct: 294 GLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTY 353
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ Y AG +E + +GI P+ + Y ++ Y ++ + D A L D+M
Sbjct: 354 NELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKE 413
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + T I G +S + + + + +G +N +L G+ +
Sbjct: 414 SGCAP-NVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHK 472
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RV E G P+ N L+
Sbjct: 473 YVKRVFQEMKSCGFEPDRDTFNTLI 497
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 10/210 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYV-EMEKVRCDPNERT 60
G Y+ AI +M+ESG++ ++N +++ + + GR I + EM +E T
Sbjct: 223 GKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFT 282
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+S GL+DE+KE F +KS G P + Y LL V+ K+ + +A ++ EM
Sbjct: 283 CSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEME 342
Query: 121 TNRIS----NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N +++ ++ F +E + D + G Y ++ A
Sbjct: 343 DNNCPPDAVTYNELVAAYVRAGFYEEG-----AALIDTMTENGIKPNAVTYTTMINAYGR 397
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
++A + D+ + G P + +N ++
Sbjct: 398 AAQVDKALSLYDQMKESGCAPNVCTYNAIL 427
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 2/162 (1%)
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR-WDDAYGLLD 117
R +L Y G + + F+++ SG+ P+++ Y ++L VY K R W+ GLLD
Sbjct: 210 RAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLD 269
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM + + + T + E + F L +GY G YNALL+
Sbjct: 270 EMRSKGLG-FDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKA 328
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
G+ A ++ E P+ +N+LV + +E GA
Sbjct: 329 GIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGA 370
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G++K + + M G + D+FN +I A + G +A K Y EM + P+ T
Sbjct: 469 GMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATY 528
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+L+ G ++ +++K+ G PS Y ++L YAK + +++
Sbjct: 529 NALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYD 588
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I + +I F + M E F L GY + +N++L + +
Sbjct: 589 GHIFPSWMLLRTLILANFKCRALAGM-ERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHD 647
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA ++ + GL P+L +N L+
Sbjct: 648 RAHEIMHLIQECGLQPDLVTYNSLM 672
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 9/193 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ +M ESG A N ++NA++ + + EE +K +M+ C PN T +LS+
Sbjct: 406 SLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMC 465
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNRI 124
G+ K FQE+KS G P + L+ + DA + DEM T +
Sbjct: 466 GNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSV 525
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + + + + +W+ E V + +G+ Y+ +L + G +
Sbjct: 526 ATYNALLNALAR-----RGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGIN 580
Query: 185 RVLDEATKRGLFP 197
R+ + +FP
Sbjct: 581 RIEKDIYDGHIFP 593
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 87/201 (43%), Gaps = 6/201 (2%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L M G+ + + + VI A + G +EA + +V ++ P T A+L V+
Sbjct: 266 GLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVF 325
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG+ E+ +E++ + P + Y L+A Y ++ +++ L+D M N I +
Sbjct: 326 GKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKP-N 384
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT + + + ++D++ G + YNA+L L E ++L
Sbjct: 385 AVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILC 444
Query: 189 EATKRGLFPELFRHNKLVWSV 209
+ G P N++ W+
Sbjct: 445 DMKVDGCAP-----NRITWNT 460
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/246 (18%), Positives = 92/246 (37%), Gaps = 56/246 (22%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + I M E+G + ++NA++ A + G + A +M+ P+E + +L
Sbjct: 508 DAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLIL 567
Query: 66 SVYCFAGLVDE-----------------------------------SKEQFQEIKSSGIL 90
+ Y G V + FQ ++ G
Sbjct: 568 NSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYK 627
Query: 91 PSVMCYCMLLAVYAKSNRWDDAY---------GLLDEMHT-NRISNIHQVTGQMIKGEFD 140
P ++ + +L+++++ N D A+ GL ++ T N + +++ G+
Sbjct: 628 PDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGEC------ 681
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
W+ E + +L G + YN +++ GL A R L E RG+ P +
Sbjct: 682 ----WK-AEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIV 736
Query: 201 RHNKLV 206
+N V
Sbjct: 737 TYNTFV 742
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + IL + SG + S+N VI+ F + G EA++ EM P T
Sbjct: 678 GGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVT 737
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+ Y G+ E E + P+ + Y +++ Y K+ ++ +A
Sbjct: 738 YNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKAKKFKEA 789
>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Brachypodium distachyon]
Length = 787
Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 2/216 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E +A+L+RM + GVA ++N ++ A+ + G ++A K M +P+ T
Sbjct: 253 GMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTY 312
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ + C AG VDE+ E++ G +LP V+ Y L K DA LL+EM
Sbjct: 313 NVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMR 372
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +IKG D + +K+ +G + YN L+ A G
Sbjct: 373 EKGVKATLVTHNIVIKGLCKD-GELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNI 431
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+A ++DE +RGL + F N +++++ + +E
Sbjct: 432 AKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYE 467
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/205 (20%), Positives = 89/205 (43%), Gaps = 11/205 (5%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y+E Q +L + G + S+ V+ A+ + E A++ + EM + + P+ T
Sbjct: 466 YEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNT 525
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ G + E+ ++ E+ G++P Y +++ Y K ++A+ ++M N
Sbjct: 526 LIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENS 585
Query: 124 -----ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
++ + G + G+ D +F+ +G + + YN L++ + G
Sbjct: 586 FKPDVVTCNTLMNGLCLNGKLDKALK------LFESWVEKGKKVDVITYNTLIQTMCKDG 639
Query: 179 LRERAARVLDEATKRGLFPELFRHN 203
+ A + RGL P+ F +N
Sbjct: 640 DVDTALHFFADMEARGLQPDAFTYN 664
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + LS M G++ ++ ++N ++ A + G EA M+K P T
Sbjct: 218 GTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTY 277
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++S Y G + ++ + + + ++G P + Y +L A ++ + D+A+ L DEM
Sbjct: 278 NTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEM 335
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L++M++ G+A + ++N +I A + G +A EM + + TL VL C
Sbjct: 403 LNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCK 462
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
+E++ Q G +P + Y ++A Y K + A L DEM +++
Sbjct: 463 EKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSIST 522
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLN 156
+IKG S ++ DKLN
Sbjct: 523 YNTLIKG----LSRMGRLKEAIDKLN 544
Score = 44.7 bits (104), Expect = 0.040, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 6/183 (3%)
Query: 27 NAVIEAFRQGGRF--EEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
NAV+ A + + ++ A+ + +R PN T ++ +C G + ++ +
Sbjct: 171 NAVLSALARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTM 230
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ G+ P + Y LL + + +A LL M + ++ ++
Sbjct: 231 QGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAY--ARLG 288
Query: 145 W-QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG-LFPELFRH 202
W + V + + G+ + YN L L G + A R+ DE + G L P++ +
Sbjct: 289 WIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTY 348
Query: 203 NKL 205
N L
Sbjct: 349 NTL 351
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 74/187 (39%), Gaps = 1/187 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E + + ++N +I+ + GR +EAI E+ + P++ T ++ YC G
Sbjct: 511 MIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGD 570
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ + + ++ + P V+ L+ + + D A L E + + +T
Sbjct: 571 LENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLF-ESWVEKGKKVDVITYN 629
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ + + + F + G YN +L AL G E A +L + +
Sbjct: 630 TLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAES 689
Query: 194 GLFPELF 200
G + F
Sbjct: 690 GTLSQSF 696
>gi|357116934|ref|XP_003560231.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Brachypodium distachyon]
Length = 922
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 93/185 (50%), Gaps = 1/185 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y ++L M ESG++ + ++N++I+ F GG + A K +M++ P+ T A
Sbjct: 497 YDRVTSLLENMKESGISPDECTYNSLIQMFSAGGFPQRANKLLRKMKETGLKPSCETYSA 556
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ Y + L E+ + + E+K+S + P+V+ Y +L+ ++A++ + + A + M +
Sbjct: 557 IIRTYSHSFLASEAIDLYNEMKASDVEPNVVVYGLLIDMFAETGQVEKALHYSNLMEESG 616
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I+ H V +IK + + W+ + ++ ++ G N++L LGL A
Sbjct: 617 ITPNHIVLTSLIKA-YSKVNCWKEAQGLYARMGNMDGGPDTIASNSMLNLYAKLGLVIEA 675
Query: 184 ARVLD 188
+ D
Sbjct: 676 KAIFD 680
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 12/153 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + +L +M E+G+ + ++++A+I + EAI Y EM+ +PN
Sbjct: 529 GGFPQRANKLLRKMKETGLKPSCETYSAIIRTYSHSFLASEAIDLYNEMKASDVEPNVVV 588
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL---- 116
++ ++ G V+++ ++ SGI P+ + L+ Y+K N W +A GL
Sbjct: 589 YGLLIDMFAETGQVEKALHYSNLMEESGITPNHIVLTSLIKAYSKVNCWKEAQGLYARMG 648
Query: 117 ------DEMHTNRISNIHQVTGQMI--KGEFDD 141
D + +N + N++ G +I K FD+
Sbjct: 649 NMDGGPDTIASNSMLNLYAKLGLVIEAKAIFDN 681
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 20/225 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +A+L+ M GV + ++N ++ F G E +K Y ++ + + +
Sbjct: 321 GRMEVAEALLANMVIRGVTPDIKTYNVMMTVFASMGDVEGVLKYYHQIGRTGLCADVVSY 380
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSG------ILPSVMCYCMLLAVYAKSNRWDDAYGL 115
VL V C +V E+++ +EI SG LP VM +Y D A+
Sbjct: 381 RVVLQVLCERKMVREAEDVIEEIMQSGTCVLGQFLPVVM------KMYIDQGFLDKAHVF 434
Query: 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
E H + ++ +I F + W+ E+VF G + YN +++A
Sbjct: 435 F-ERHFRALEVSSKIVAAIIDA-FAERCLWEEAEHVFHYARGVGGKRDIVEYNVMVKAYG 492
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
+R +L+ + G+ P+ +N L+ +M+ G +
Sbjct: 493 LAKRYDRVTSLLENMKESGISPDECTYNSLI------QMFSAGGF 531
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I + + GR ++A++ +V+M + P+ T +++V+ G ++ ++ +
Sbjct: 274 TYNTLIALYGKAGRLKDAMEMFVDMLVYQVVPDIYTFNTMINVFGLHGRMEVAEALLANM 333
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
G+ P + Y +++ V+A D G+L H
Sbjct: 334 VIRGVTPDIKTYNVMMTVFAS---MGDVEGVLKYYH 366
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 85/219 (38%), Gaps = 40/219 (18%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-------------- 46
GL +E +L M GVA + S N + + GR+ +A+ +
Sbjct: 171 AGLAQESLLLLLHMRAQGVAPDEVSMNTFVRILKDDGRYSDALALFNNWCDGRFDVEFLH 230
Query: 47 VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
++ V C ++ +L+ C L +E+ L V+ Y L+A+Y K+
Sbjct: 231 LDYTTVSC---HGQMQFLLADLCHDKLDSAGPSGVEEVPRKPKL--VVTYNTLIALYGKA 285
Query: 107 NRWDDA---------YGLLDEMHT-NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN 156
R DA Y ++ +++T N + N+ + G+M ++ E + +
Sbjct: 286 GRLKDAMEMFVDMLVYQVVPDIYTFNTMINVFGLHGRM-----------EVAEALLANMV 334
Query: 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
G ++ YN ++ +G E + + + GL
Sbjct: 335 IRGVTPDIKTYNVMMTVFASMGDVEGVLKYYHQIGRTGL 373
>gi|15224753|ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334184304|ref|NP_001189552.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g19280
gi|3135258|gb|AAC16458.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251769|gb|AEC06863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251770|gb|AEC06864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 693
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 12/215 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE ++L ++ G++++S S ++VI+ F + G+ EEAIK + R PN
Sbjct: 319 AGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKL---IHSFRLRPNIFV 375
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY----GLL 116
+ LS C G + + FQEI G+LP +CY ++ Y R D A+ LL
Sbjct: 376 YSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALL 435
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ ++ T ++ G + E VF + EG L + YN L+
Sbjct: 436 KSGNPPSLT-----TSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGK 490
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDV 211
+ ++DE G+ P++ +N L+ S+ V
Sbjct: 491 THQLNKVFELIDEMRSAGISPDVATYNILIHSMVV 525
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/212 (18%), Positives = 88/212 (41%), Gaps = 1/212 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +++ M G+ + ++N ++ + + + + + EM P+ T
Sbjct: 457 GSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATY 516
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G +DE+ E E+ G +PS + + ++ ++K + +A+ L M
Sbjct: 517 NILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMAD 576
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R+ ++ G + + +F+KL G + YN L+ +G E
Sbjct: 577 LRMKPDVVTCSALLHG-YCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIE 635
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHR 213
+A ++ +RG+ P H+ LV ++ R
Sbjct: 636 KACELIGLMVQRGMLPNESTHHALVLGLEGKR 667
>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 116/245 (47%), Gaps = 12/245 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + + + M E G+A ++N +I +G +F EA+K ++ KV PN T
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTY 336
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C +D + F ++KSSG+ P+++ Y L+A Y+K A L+ EM
Sbjct: 337 NILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEE 396
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I+ +VT ++ F ++ + + + G + Y+ LL L G +
Sbjct: 397 RCIAP-SKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMK 455
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW-EGGAYTAISVWLNKMYEMFMMGEDL 240
A+++ + L P N ++++ +H EG +Y A+ + LN+M + M +
Sbjct: 456 EASKLFKSLGEMHLQP-----NSVIYNTMIHGYCKEGSSYRALRL-LNEMVQSGM----V 505
Query: 241 PQLAT 245
P +A+
Sbjct: 506 PNVAS 510
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ + E G++ N + +I+ + G A + +M ++ PN T +++ +
Sbjct: 180 LLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFF 239
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL E + ++ +K SGI+P+ Y L++ Y D A+ + EM I+
Sbjct: 240 KQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVM 299
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G + + V+ V K+N G + YN L+ + + A R+ ++
Sbjct: 300 TYNILIGGLCRGKKFGEAVKLV-HKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQ 358
Query: 190 ATKRGLFPELFRHNKLV 206
GL P L +N L+
Sbjct: 359 LKSSGLSPTLVTYNTLI 375
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K C+ + S M +SG+ + +++ ++ G +EA K + + ++ PN +
Sbjct: 421 KACE-MHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTM 479
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ YC G + E+ SG++P+V +C + + + +W +A LL +M
Sbjct: 480 IHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQM 534
>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 1/196 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E GV ++ N+++ F + R E A Y EM ++R + T +++V C G
Sbjct: 177 MKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGK 236
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ ++K+ +++SG+ P+++ Y ++ Y S R + A +L M +I G
Sbjct: 237 LKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGS 296
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G + + +F+++ +G YN L++ G + A+ DE K+
Sbjct: 297 LISG-MCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKK 355
Query: 194 GLFPELFRHNKLVWSV 209
G+ P + +N L+ ++
Sbjct: 356 GISPTMSTYNSLIHAL 371
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 3/197 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + + M SGV N ++N ++ + GR E A M++ + +P+ T
Sbjct: 235 GKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTY 294
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++S C G ++E+ + F+E+ G+ PS + Y L+ + D A DEM
Sbjct: 295 GSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLK 354
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
IS +I F ++ + E + ++ +G YN L+ +C
Sbjct: 355 KGISPTMSTYNSLIHALFMEQRTDE-AECMIKEIQEKGISPDAITYNILING-YCRCANA 412
Query: 182 RAARVL-DEATKRGLFP 197
+ A +L DE G+ P
Sbjct: 413 KKAFLLHDEMLASGIKP 429
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 62/115 (53%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + +++ GV ++ FNA+I+ + A + +M++++ P+E T +
Sbjct: 448 KEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTI 507
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ +C G V+E++E F E+K GI P + + L++ Y++ DA+ + +EM
Sbjct: 508 MQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEM 562
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 87/203 (42%), Gaps = 21/203 (10%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G++ ++N++I A R +EA E+++ P+ T +++ YC
Sbjct: 352 MLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCAN 411
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL----------DEMHTNR 123
++ E+ +SGI P+ Y LL V +K NR +A L D + N
Sbjct: 412 AKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNA 471
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ + H + +KG F+ + ++ D++ +N +++ G E A
Sbjct: 472 LIDGH-CSNSNVKGAFELLKDMDRMKVPPDEVT----------FNTIMQGHCREGKVEEA 520
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+ DE +RG+ P+ N L+
Sbjct: 521 RELFDEMKRRGIKPDHISFNTLI 543
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 1/138 (0%)
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C DE+ E F +K G+LP++ LL+++ K NR + A+ L EM RI +
Sbjct: 162 CDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSV 221
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
MI E + + + G + YN ++ G E A +L
Sbjct: 222 YTFNIMI-NVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILT 280
Query: 189 EATKRGLFPELFRHNKLV 206
++ + P+ F + L+
Sbjct: 281 TMKRQKIEPDSFTYGSLI 298
>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 1/196 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E GV ++ N+++ F + R E A Y EM ++R + T +++V C G
Sbjct: 177 MKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGK 236
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ ++K+ +++SG+ P+++ Y ++ Y S R + A +L M +I G
Sbjct: 237 LKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGS 296
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G + + +F+++ +G YN L++ G + A+ DE K+
Sbjct: 297 LISG-MCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKK 355
Query: 194 GLFPELFRHNKLVWSV 209
G+ P + +N L+ ++
Sbjct: 356 GISPTMSTYNSLIHAL 371
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 3/197 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + + M SGV N ++N ++ + GR E A M++ + +P+ T
Sbjct: 235 GKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTY 294
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++S C G ++E+ + F+E+ G+ PS + Y L+ + D A DEM
Sbjct: 295 GSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLK 354
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
IS +I F ++ + E + ++ +G YN L+ +C
Sbjct: 355 KGISPTMSTYNSLIHALFMEQRTDE-AECMIKEIQEKGISPDAITYNILING-YCRCANA 412
Query: 182 RAARVL-DEATKRGLFP 197
+ A +L DE G+ P
Sbjct: 413 KKAFLLHDEMLASGIKP 429
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 61/115 (53%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + +++ GV + FNA+I+ + A + +M++++ P+E T +
Sbjct: 448 KEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTI 507
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ +C G V+E++E F E+K GI P + + L++ Y++ DA+ + +EM
Sbjct: 508 MQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEM 562
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 91/201 (45%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + ++ + E G++ ++ ++N +I + + ++A + EM P ++T ++L
Sbjct: 379 EAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLL 438
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
V + E+ + F++I S G+LP V+ + L+ + ++ A+ LL +M ++
Sbjct: 439 HVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVP 498
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+VT I E + +FD++ G +N L+ G + A R
Sbjct: 499 P-DEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFR 557
Query: 186 VLDEATKRGLFPELFRHNKLV 206
V +E G P + +N LV
Sbjct: 558 VRNEMLDTGFNPTVLTYNALV 578
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 21/203 (10%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G++ ++N++I A R +EA E+++ P+ T +++ YC
Sbjct: 352 MLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCAN 411
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----------NR 123
++ E+ +SGI P+ Y LL V +K NR +A L ++ + N
Sbjct: 412 AKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNA 471
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ + H + +KG F+ + ++ D++ +N +++ G E A
Sbjct: 472 LIDGH-CSNSNVKGAFELLKDMDRMKVPPDEVT----------FNTIMQGHCREGKVEEA 520
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+ DE +RG+ P+ N L+
Sbjct: 521 RELFDEMKRRGIKPDHISFNTLI 543
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 1/138 (0%)
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C DE+ E F +K G+LP++ LL+++ K NR + A+ L EM RI +
Sbjct: 162 CDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSV 221
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
MI E + + + G + YN ++ G E A +L
Sbjct: 222 YTFNIMI-NVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILT 280
Query: 189 EATKRGLFPELFRHNKLV 206
++ + P+ F + L+
Sbjct: 281 TMKRQKIEPDSFTYGSLI 298
>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 1/197 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
+ K+ +L M + G+ + F +++A + G +EA K + +M + + PN R
Sbjct: 180 ANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE-KFPPNLRY 238
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L +C G + E+KE ++K +G+ P ++ + LL+ YA + + DAY L+++M
Sbjct: 239 FTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMR 298
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I+ E VF ++ G + Y AL+ G+
Sbjct: 299 KRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMI 358
Query: 181 ERAARVLDEATKRGLFP 197
++ VLD+ K+G+ P
Sbjct: 359 DKGYSVLDDMRKKGVMP 375
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+++ M + G N + + +I+A R R +EA++ +VEME+ C+ + T A++S +
Sbjct: 293 LMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGF 352
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G++D+ +++ G++PS + Y ++ + K ++++ L+++M
Sbjct: 353 CKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKM 403
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 2/197 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L +M E+G+ + F ++ + G+ +A +M K +PN
Sbjct: 250 GKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCY 309
Query: 62 EAVLSVYCFA-GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C +DE+ F E++ G ++ Y L++ + K D Y +LD+M
Sbjct: 310 TVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMR 369
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ QVT I + + ++ + +K+ G + YN ++ LG
Sbjct: 370 KKGVMP-SQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEV 428
Query: 181 ERAARVLDEATKRGLFP 197
+ A R+ +E GL P
Sbjct: 429 KEAVRLWNEMEANGLSP 445
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 61/128 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + ++L M + GV + ++ ++ A + +FEE ++ +M++ C P+
Sbjct: 356 GMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIY 415
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ + C G V E+ + E++++G+ P V + +++ + +A EM +
Sbjct: 416 NVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVS 475
Query: 122 NRISNIHQ 129
I + Q
Sbjct: 476 RGIFSAPQ 483
>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
[Vitis vinifera]
gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 2/194 (1%)
Query: 14 MSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
M E G+ + S N +I+A + G + A++ + EM C P+ T +++ C G
Sbjct: 146 MREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLG 205
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ E+KE F+E+++ P+V+ Y L+ +S D A LL+EM + I
Sbjct: 206 KIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYS 265
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ G + + +E + D + + M Y+ L+ L G + A +LD
Sbjct: 266 SLMDGHCKSGCSSRALE-LLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKL 324
Query: 193 RGLFPELFRHNKLV 206
+GL P+ + K++
Sbjct: 325 QGLRPDAGLYGKII 338
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 8/203 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M G +S ++ +I + G+ EA + + EME C P T +++ C
Sbjct: 178 IFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLC 237
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR-ISNIH 128
+ +D + +E+ S GI P+V Y L+ + KS A LLD M + R + N+
Sbjct: 238 QSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNM- 296
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+T + E Q + D++ +G Y ++ + AA LD
Sbjct: 297 -ITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLD 355
Query: 189 EATKRGLFPELFRHNKLVWSVDV 211
E G+ P N+L WS+ V
Sbjct: 356 EMVLGGISP-----NRLTWSLHV 373
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 107/248 (43%), Gaps = 21/248 (8%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ + +L RM E D F ++ A+ + + +A++ + +M++ C+P++++
Sbjct: 66 FRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYIT 125
Query: 64 VLSVYCFAGLVDESKEQ-----FQEIKSSGILPSVMCYCMLLAVYAK-SNRWDDAYGLLD 117
V FA LV E++ + ++ ++ GI PSV +L+ K S D A +
Sbjct: 126 V-----FAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFR 180
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM G +I G + E +F ++ + + Y +L+ L
Sbjct: 181 EMPNRGCPPDSYTYGTLINGLCRLGKIGEAKE-LFKEMETKACSPTVVTYTSLIHGLCQS 239
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMG 237
+ A R+L+E +G+ P +F ++ L+ +G + S ++ +M +
Sbjct: 240 KDLDSAIRLLEEMASKGIKPNVFTYSSLM---------DGHCKSGCSSRALELLDMMVSR 290
Query: 238 EDLPQLAT 245
LP + T
Sbjct: 291 RHLPNMIT 298
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 9/201 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + M + ++ ++I Q + AI+ EM PN T
Sbjct: 205 GKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTY 264
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C +G + E + S LP+++ Y L+ K + +A +LD M
Sbjct: 265 SSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKL 324
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG-------YGLGMRFYNALLEAL 174
+ + G++I G F D + D++ G + L +R +N +++ L
Sbjct: 325 QGLRPDAGLYGKIISG-FCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGL 383
Query: 175 WCLGLRERAARVLDEATKRGL 195
C RA ++ RG+
Sbjct: 384 -CTEHPNRAFQLYLSMRTRGI 403
>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial [Vitis vinifera]
Length = 496
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 3/187 (1%)
Query: 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
+N++S N +++ + + E+A ++E+ K PN T + +C A VDE++
Sbjct: 179 KNTESMNLLLDTLCKERKVEQARAIFLEL-KPHISPNTHTFNIFIHGWCKANRVDEAEWT 237
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140
QE+K G P V+ Y ++ Y + + + Y LLD+M + + VT I
Sbjct: 238 IQEMKGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAP-NVVTYTTIMCSLT 296
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD-EATKRGLFPEL 199
++ + +++ G FYNAL+ L G A RV + E K G+ P
Sbjct: 297 KVEQFEEALQIAERMRSVGCKPDTLFYNALIHTLGRAGQLREAVRVFEVEMPKTGVPPNT 356
Query: 200 FRHNKLV 206
+N ++
Sbjct: 357 STYNSMI 363
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-VEMEKVRCDPNERTLE 62
++E I RM G ++ +NA+I + G+ EA++ + VEM K PN T
Sbjct: 301 FEEALQIAERMRSVGCKPDTLFYNALIHTLGRAGQLREAVRVFEVEMPKTGVPPNTSTYN 360
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++++++C ++ +EI++S P + Y +L K+ + D LD+M
Sbjct: 361 SMIAMFCHHSQEQKALNLLREIENSTFCKPDIQTYYPVLKSCFKTGKIDSLSNFLDDM 418
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNER 59
G L + + M ++GV N+ ++N++I F + ++A+ E+E C P+ +
Sbjct: 334 GQLREAVRVFEVEMPKTGVPPNTSTYNSMIAMFCHHSQEQKALNLLREIENSTFCKPDIQ 393
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T VL G +D ++ + L V Y +L+ ++N+ + Y L +E
Sbjct: 394 TYYPVLKSCFKTGKIDSLSNFLDDMVNKHHLSLDVSAYTLLIHGLCRANKCEWGYNLFEE 453
Query: 119 M 119
M
Sbjct: 454 M 454
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 103/225 (45%), Gaps = 2/225 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ RM G+A ++ ++N+V+ + G+ +E + + EM C PN T ++ +C
Sbjct: 381 LVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFC 440
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
++E+ + G++P + + L+ + ++ D AY L ++ S
Sbjct: 441 KINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATAD 500
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
T ++ G + + N QM E +F ++ +GY + Y L++ +RA L E
Sbjct: 501 -TFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAE 559
Query: 190 ATKRGLFPELFRHNKLVWSVDV-HRMWEGGAYTAISVWLNKMYEM 233
+G P + +++ S+ + HR+ E A I V + + E+
Sbjct: 560 MVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPEV 604
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 92/206 (44%), Gaps = 2/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +E A++ M ++ +A + ++N ++ + + +EA + M C P++ T
Sbjct: 163 GGRLEEAVALVESM-DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFT 221
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ YC ++ E+ E ++ G +P + YC L+ + A L +E
Sbjct: 222 YNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQ 281
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ V ++KG ++ V +++ +G + YN ++ L +G
Sbjct: 282 AKDLKPDLVVYNSLVKGLCRQGLILHALQ-VMNEMVEDGCHPDIWTYNIVINGLCKMGNI 340
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
AA V+++A +G P++F N ++
Sbjct: 341 SDAAVVMNDAIVKGYLPDVFTFNTMI 366
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 97/206 (47%), Gaps = 12/206 (5%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A+L+++ + G++ N + N I +GGR EEA+ A VE P+ T ++
Sbjct: 133 ESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAV-ALVESMDAYIAPDVVTYNTLM 191
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE-----MH 120
C V E+ + + + + G +P Y ++ Y K + +A LL +
Sbjct: 192 RGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFV 251
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+R++ + G +G+ + + +E +F++ + + YN+L++ L GL
Sbjct: 252 PDRVTYCSLINGLCAEGDVE-----RALE-LFNEAQAKDLKPDLVVYNSLVKGLCRQGLI 305
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A +V++E + G P+++ +N ++
Sbjct: 306 LHALQVMNEMVEDGCHPDIWTYNIVI 331
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N++++ + G A++ EM + C P+ T V++ C G + ++ +
Sbjct: 292 YNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAI 351
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
G LP V + ++ Y K + D A L++ M I+ +T +
Sbjct: 352 VKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAP-DAITYNSVLNGLCKAGKA 410
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+ V F+++ +G YN L+E + E A+ V+ ++ GL P+ N L
Sbjct: 411 KEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTL 470
Query: 206 V 206
+
Sbjct: 471 I 471
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E ++ RMS+ G+ ++ SFN +I F + G + A + ++++ T +
Sbjct: 446 EEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNIL 505
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ Y + +++ F E+ S G P + Y +L+ K+ D AY L EM
Sbjct: 506 IGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEM 560
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G + ++NA+++A ++A K YV M P+ RT + +C G +
Sbjct: 5 GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64
Query: 78 KEQFQEIKSSGILPSVMCYCMLL-AVYAKSNRWDDAYGLLDEM 119
+ + G + YC ++ +YA + + DA L DEM
Sbjct: 65 LRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGY-DARHLFDEM 106
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L +M E G + ++N +I + G+ EE K EM K +P+ T
Sbjct: 505 GNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTY 564
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G +DE+ + E KS ++P+V Y +++ Y K+++ ++ L E+ T
Sbjct: 565 NLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLT 624
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ V +I+ + + + + + D + +G Y++L+ + +G E
Sbjct: 625 QNLELNSVVYNTLIRAYCRNGNTVEAFK-LHDDMRSKGIPPTTATYSSLIHGMCNIGRME 683
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++DE K GL P + + L+
Sbjct: 684 DAKCLIDEMRKEGLLPNVVCYTALI 708
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 88/207 (42%), Gaps = 11/207 (5%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + + + + + NS +N +I A+ + G EA K + +M P T ++
Sbjct: 613 EEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSL 672
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----- 119
+ C G ++++K E++ G+LP+V+CY L+ Y K + D +L EM
Sbjct: 673 IHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDI 732
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
H N+I+ + G + + + + ++ +G YN L G
Sbjct: 733 HPNKITYTVMIDG------YSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGK 786
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
E ++ D ++ GL + + LV
Sbjct: 787 IEEGFKICDYMSQEGLPLDEITYTTLV 813
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 92/203 (45%), Gaps = 1/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E ++L E G N +N +I+ + + G +A++ +M +PN TL +
Sbjct: 332 FNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNS 391
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ +C G +++++ +E+ S G + + ++ ++R++ A L EM
Sbjct: 392 IIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRN 451
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ + ++ G + + VE F L +G+G + NAL+ L G + A
Sbjct: 452 MRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLE-KGFGANLVTTNALIHGLCKTGNMQEA 510
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
R+L + +RG + +N L+
Sbjct: 511 VRLLKKMLERGFVLDKITYNTLI 533
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 19/210 (9%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV+ + F+ I AF +GG+ E+AI+ + +MEK+ PN T ++ C G +DE+
Sbjct: 241 GVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEA 300
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+++ G+ +++ Y +L+ K ++++A +L E + V +I G
Sbjct: 301 FRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDG 360
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ N + + +G N++++ +G E+A +L+E RG
Sbjct: 361 -YCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRG--- 416
Query: 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227
+S++ GA+T I WL
Sbjct: 417 ---------FSIN------PGAFTTIIHWL 431
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + ++ M + G+ N + A+I + + G+ ++ + EM PN+ T
Sbjct: 680 GRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITY 739
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ Y +G + + + E+ GI+P + Y +L + K + ++ + + D M
Sbjct: 740 TVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYM 797
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 96/235 (40%), Gaps = 7/235 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ + M + GV+ N ++N +I + G +EA + +M K + T
Sbjct: 259 GGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLIT 318
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +E+ +E G P+ + Y L+ Y K DA + +M
Sbjct: 319 YSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMV 378
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ I N + VT I F + E + +++ G+ + + ++ L C+ R
Sbjct: 379 SKGI-NPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWL-CMNSR 436
Query: 181 -ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234
E A R L E R + P ++ L+ ++ EG A+ +W + + F
Sbjct: 437 FESALRFLREMLLRNMRP----NDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGF 487
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 42/226 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + IL M G + N +F +I RFE A++ EM PN+ L
Sbjct: 400 GQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLL 459
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G ++ E + + G +++ L+ K+ +A LL +M
Sbjct: 460 TTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKM-- 517
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +G +V DK+ YN L+ G E
Sbjct: 518 ------------LERG------------FVLDKIT----------YNTLISGCCKEGKVE 543
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYT-AISVW 226
++ E K+G+ P+ F +N L +H M G A+++W
Sbjct: 544 EGFKLRGEMVKQGIEPDTFTYNLL-----IHGMCRIGKLDEAVNLW 584
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 15/205 (7%)
Query: 9 AILSRMSESGVARNSDSF--NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
A L+ + ESGVA + + FR G F AI + + P +T +LS
Sbjct: 162 ADLNEVGESGVAVAAVDLLIHVYCTQFRNVG-FRNAIGVFRFLANKGVFPTVKTCTFLLS 220
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----T 121
A +++S F+ ++ G+ P V + + + K + +DA L +M
Sbjct: 221 SLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSP 279
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N ++ + + G G D+ ++ +K+ +G + Y+ L+ L L
Sbjct: 280 NVVTYNNLIHGLCKHGNLDEAFRFK------EKMVKDGVNATLITYSVLINGLMKLEKFN 333
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A VL E ++G P +N L+
Sbjct: 334 EANSVLKETLEKGFTPNEVVYNTLI 358
>gi|46518477|gb|AAS99720.1| At2g19280 [Arabidopsis thaliana]
gi|62319953|dbj|BAD94048.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|110738808|dbj|BAF01327.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 693
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 12/215 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE ++L ++ G++++S S ++VI+ F + G+ EEAIK + R PN
Sbjct: 319 AGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKL---IHSFRLRPNIFV 375
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY----GLL 116
+ LS C G + + FQEI G+LP +CY ++ Y R D A+ LL
Sbjct: 376 YSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALL 435
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ ++ T ++ G + E VF + EG L + YN L+
Sbjct: 436 KSGNPPSLT-----TSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGK 490
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDV 211
+ ++DE G+ P++ +N L+ S+ V
Sbjct: 491 THQLNKVFELIDEMRSAGISPDVATYNILIHSMVV 525
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/212 (18%), Positives = 88/212 (41%), Gaps = 1/212 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +++ M G+ + ++N ++ + + + + + EM P+ T
Sbjct: 457 GSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATY 516
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G +DE+ E E+ G +PS + + ++ ++K + +A+ L M
Sbjct: 517 NILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMAD 576
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R+ ++ G + + +F+KL G + YN L+ +G E
Sbjct: 577 LRMKPDVVTCSALLHG-YCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIE 635
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHR 213
+A ++ +RG+ P H+ LV ++ R
Sbjct: 636 KACELIGLMVQRGMLPNESTHHALVLGLEGKR 667
>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 942
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ M + G+ + +N +I AF G + AI+ EM+K+R P RT +++ +
Sbjct: 541 AVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGF 600
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+G + S E F ++ G +P+V + L+ + + + A +LDEM +S
Sbjct: 601 AKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANE 660
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++++G + EY F +L EG + + Y ALL+A G + A V
Sbjct: 661 HTYTKIMQGYASVGDTGKAFEY-FTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTK 719
Query: 189 EATKRGLFPELFRHNKLV 206
E + R + F +N L+
Sbjct: 720 EMSARNIPRNSFVYNILI 737
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 77/197 (39%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M G +FNA+I + + E+A++ EM NE T ++ Y
Sbjct: 612 VFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 671
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ E F +++ G+ + Y LL KS R A + EM I
Sbjct: 672 SVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSF 731
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I G W+ + + ++ EG + Y + + A G RA + ++E
Sbjct: 732 VYNILIDGWARRGDVWEAADLI-QQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEE 790
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P + + L+
Sbjct: 791 MEALGVKPNIKTYTTLI 807
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RNS +N +I+ + + G EA +M+K P+ T
Sbjct: 709 GRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTY 768
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ +S AG ++ + + +E+++ G+ P++ Y L+ +A+++ + A +EM
Sbjct: 769 TSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEM 826
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M + GV + ++ + I A + G A + EME + PN +T ++
Sbjct: 748 EAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLI 807
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ A L +++ ++E+K+ G+ P Y C+L ++ ++++
Sbjct: 808 KGWARASLPEKALSCYEEMKAVGLKPDKAVYHCLLTSLLSRAS 850
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 15/178 (8%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY-----CFAGLVDE 76
N+ + +I A Q E A EME E ++A +++Y + + DE
Sbjct: 414 NASIYGKIIYAHCQTCNMERAEALVREME-------EEGIDAPIAIYHTMMDGYTMVADE 466
Query: 77 SKE--QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134
K F+ +K G P+V+ Y L+ +Y K + A + M + + + M
Sbjct: 467 KKGLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMM 526
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
I G F +W VF+ + EG + YN ++ A +G +RA + + E K
Sbjct: 527 ING-FVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQK 583
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 71/170 (41%), Gaps = 13/170 (7%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
+R+ G+ + ++ A+++A + GR + A+ EM N ++ +
Sbjct: 683 FTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWAR 742
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G V E+ + Q++K G+ P + Y ++ +K+ + A ++EM + +
Sbjct: 743 RGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKT 802
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNC--EGYGLGMR----FYNALLEAL 174
+IKG W L+C E +G++ Y+ LL +L
Sbjct: 803 YTTLIKG-------WARASLPEKALSCYEEMKAVGLKPDKAVYHCLLTSL 845
>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
Length = 973
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 35/240 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL + L M E+G+ N+ ++N ++ + G EA++ Y M P+ RT
Sbjct: 174 GGL-RSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRT 232
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
++ + V+ +E+++ G+ P+V Y + + V ++ R+D+AY +L +M
Sbjct: 233 YSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKME 292
Query: 120 ----------HT---------NRISNIHQVTGQMIKGE--------------FDDESNWQ 146
HT RIS+ V +M K + F D + Q
Sbjct: 293 NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQ 352
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V +++ + +GY + Y A+++AL +G A + DE ++G+ PE + +N L+
Sbjct: 353 SVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI 412
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 85/196 (43%), Gaps = 1/196 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + + NAV+ + GR A + + E++ + P+ T ++ A
Sbjct: 466 MKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASK 525
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
DE+ + F ++ + +P V+ L+ K+ R D+A+ + ++ +
Sbjct: 526 FDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNT 585
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ G E + V ++ +++ Y + YN +L+ L G A +L T +
Sbjct: 586 LLAG-LGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTK 644
Query: 194 GLFPELFRHNKLVWSV 209
G P+L +N +++ +
Sbjct: 645 GCIPDLSSYNTVIYGL 660
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 5/203 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + M + G+ S+N++I F + RF +A++ + M+ PN T +
Sbjct: 388 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFI 447
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ Y +G ++ ++++ +KS GI+P V+ +L AKS R A + E+ +S
Sbjct: 448 NYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVS 507
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKL--NCEGYGLGMRFYNALLEALWCLGLRERA 183
MIK + V+ +D + NC L + N+L++ L+ G + A
Sbjct: 508 PDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAV---NSLIDTLYKAGRGDEA 564
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
R+ + + L P +N L+
Sbjct: 565 WRIFYQLKEMNLEPTDGTYNTLL 587
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + +M +S + ++ +++ F G + ++ + M+ + N
Sbjct: 314 GRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAY 373
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
AV+ C G V E+ E F E+K GI+P Y L++ + K++R+ DA L M
Sbjct: 374 TAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHM 431
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I + M G N ++ AVI+A Q GR EA++ + EM++ P + + +++S +
Sbjct: 357 IWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFL 416
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A ++ E F+ + G P+ + + + Y KS A + M + I
Sbjct: 417 KADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVP-DV 475
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V G + M + VF +L G Y +++ + A ++ +
Sbjct: 476 VAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYD 535
Query: 190 ATKRGLFPELFRHNKLV 206
+ P++ N L+
Sbjct: 536 MIENNCVPDVLAVNSLI 552
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E I M E+ + + N++I+ + GR +EA + + +++++ +P + T
Sbjct: 526 FDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNT 585
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L+ G V E +E+ S P+++ Y +L K+ +DA +L M T
Sbjct: 586 LLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTT-- 643
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEY 150
KG D S++ V Y
Sbjct: 644 ------------KGCIPDLSSYNTVIY 658
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 85/208 (40%), Gaps = 15/208 (7%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ + GV+ + +N++I + A + EM+++ C P+E T +L
Sbjct: 773 EAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLL 832
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ ++E + +E+ G + + Y +++ KS R + A L + + S
Sbjct: 833 DAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFS 892
Query: 126 NIHQVTGQMIK-----GEFDDESNW--QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
G ++ G +D N +M+EY K NC YN LL G
Sbjct: 893 PTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGC-KANCT-------IYNILLNGHRIAG 944
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
E+ + + +G+ P++ + ++
Sbjct: 945 NTEKVCHLFQDMVDQGINPDIKSYTIII 972
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/175 (20%), Positives = 75/175 (42%), Gaps = 21/175 (12%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + + M E G + ++N +++A + R EE +K EM + + T ++S
Sbjct: 810 EGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISG 869
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT------ 121
+ ++++ + + + S G P+ Y LL K+ R +DA L +EM
Sbjct: 870 LVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKAN 929
Query: 122 ----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
N + N H++ G N + V ++F + +G ++ Y +++
Sbjct: 930 CTIYNILLNGHRIAG-----------NTEKVCHLFQDMVDQGINPDIKSYTIIID 973
>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 664
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 91/198 (45%), Gaps = 1/198 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L ++ E+G + +N ++ + Q G+ +A EM+KV C PN +
Sbjct: 283 GKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASF 342
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C +DE+ F E++ SG V+ Y L++ + K D AY +LD+M
Sbjct: 343 TILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDM-I 401
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + Q++ I + + + + +++ G + YN ++ + LG +
Sbjct: 402 QKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLK 461
Query: 182 RAARVLDEATKRGLFPEL 199
A R+ E GL P L
Sbjct: 462 EAVRLWGEMQAGGLNPGL 479
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 4/196 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ K+ +L M + G + F +++A + G +EA + +M +VR +PN R
Sbjct: 215 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDM-RVRFNPNLRHFT 273
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HT 121
++L +C G + E+K +IK +G P ++ Y LL YA++ + DA+ LL EM
Sbjct: 274 SLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKV 333
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N N T ++ F +F ++ G + Y L+ G +
Sbjct: 334 NCGPNAASFT--ILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTD 391
Query: 182 RAARVLDEATKRGLFP 197
+A +LD+ ++G P
Sbjct: 392 KAYEILDDMIQKGHDP 407
>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
Length = 500
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 97/200 (48%), Gaps = 4/200 (2%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
C+ IL R S ++ +N +I+AF Q ++EA Y+++ + RC PNE T ++
Sbjct: 149 CRWILLR---SSFKQDVICYNLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYALLIK 205
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
YC +GL+++++ F E+K+ G+ S + Y + K + A + M +
Sbjct: 206 AYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKP 265
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ T M+ + + M VF+++ + Y AL+ A GL E+A V
Sbjct: 266 STE-TYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEV 324
Query: 187 LDEATKRGLFPELFRHNKLV 206
++ + GL P+++ +N L+
Sbjct: 325 FEQMQEAGLEPDVYSYNALM 344
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 11/211 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + I RM G +++++ +I + + G+ A+K + EM +C PN T
Sbjct: 245 GGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICT 304
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA---YGLLD 117
A+++ + GL ++++E F++++ +G+ P V Y L+ Y+++ A + L+
Sbjct: 305 YTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQ 364
Query: 118 EM--HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
M +R S V G +D E VF+ + G M+ + LL A
Sbjct: 365 HMGCEPDRASYNILVDAYGRAGFLND------AEAVFEDMKRVGITPTMKSHMVLLSAFS 418
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + +L++ K GL + F N ++
Sbjct: 419 KTGNVSKCEDILNQMCKSGLKLDTFVLNSML 449
>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
Length = 1351
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 35/240 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL + L M E+G+ N+ ++N ++ + G EA++ Y M P+ RT
Sbjct: 218 GGL-RSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRT 276
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
++ + V+ +E+++ G+ P+V Y + + V ++ R+D+AY +L EM
Sbjct: 277 YSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEME 336
Query: 120 ----------HT---------NRISNIHQVTGQMIKGE--------------FDDESNWQ 146
HT RIS+ V +M K + F D Q
Sbjct: 337 NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQ 396
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V +++ + +GY + Y A+++AL +G A + DE ++G+ PE + +N L+
Sbjct: 397 SVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI 456
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 85/196 (43%), Gaps = 1/196 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + + NAV+ + GR A + + E++ + P+ T ++ A
Sbjct: 510 MKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASK 569
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
DE+ + F ++ + +P V+ L+ K+ R D+A+ + ++ +
Sbjct: 570 FDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNT 629
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ G E + V ++ +++ Y + YN +L+ L G A +L T +
Sbjct: 630 LLAG-LGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTK 688
Query: 194 GLFPELFRHNKLVWSV 209
G P+L +N +++ +
Sbjct: 689 GCIPDLSSYNTVIYGL 704
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
++ E G+ + ++N +I+ + R EEA+ + EM+K PN T +++ AG
Sbjct: 1034 QLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAG 1093
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM------HTNRISN 126
E+ + ++E+ + G P+V Y L+ Y+ S D AY M + +
Sbjct: 1094 KAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTCH 1153
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159
IH++ +KG+ D E + +N EG
Sbjct: 1154 IHELMKTFLKGDSDS------YEIIVTFINAEG 1180
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 45/263 (17%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + + M E G + ++N +++A + R EE +K EM + + T ++S
Sbjct: 854 EGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISG 913
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT------ 121
+ ++++ + + + S G P+ Y LL K+ R +DA L +EM
Sbjct: 914 LVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKAN 973
Query: 122 ----NRISNIHQVTG------QMIKGEFDDESNWQMVEY--VFDKLNCEGYGL--GMRF- 166
N + N H++ G + + D N + Y + D L C+ L G+ +
Sbjct: 974 CTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTL-CKAGQLNDGLTYF 1032
Query: 167 --------------YNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
YN L++ L E A + +E K+G+ P L+ +N L+ +H
Sbjct: 1033 RQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLI----LH 1088
Query: 213 RMWEGGAYTAISVWLNKMYEMFM 235
G A A KMYE +
Sbjct: 1089 LGKAGKAAEA-----GKMYEELL 1106
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 5/203 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + M + G+ S+N++I F + RF +A++ + M+ PN T +
Sbjct: 432 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFI 491
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ Y +G ++ ++++ +KS GI+P V+ +L AKS R A + E+ +S
Sbjct: 492 NYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVS 551
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKL--NCEGYGLGMRFYNALLEALWCLGLRERA 183
MIK + V+ +D + NC L N+L++ L+ G + A
Sbjct: 552 PDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVL---VVNSLIDTLYKAGRGDEA 608
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
++ + + L P +N L+
Sbjct: 609 WQIFYQLKEMNLEPTDGTYNTLL 631
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 86/208 (41%), Gaps = 15/208 (7%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ + GV+ + S+N++I + A + EM+++ C P+E T +L
Sbjct: 817 EAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLL 876
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ ++E + +E+ G + + Y +++ KS R + A L + + S
Sbjct: 877 DAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFS 936
Query: 126 NIHQVTGQMIK-----GEFDDESNW--QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
G ++ G +D N +M+EY K NC YN LL G
Sbjct: 937 PTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGC-KANCT-------IYNILLNGHRIAG 988
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
E+ + + +G+ P++ + ++
Sbjct: 989 NTEKVCHLFQDMVDQGINPDIKSYTIII 1016
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + +M +S + ++ +++ F G + ++ + M+ + N
Sbjct: 357 AGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVA 416
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
AV+ C G V E+ E F E+K GI+P Y L++ + K++R+ DA L M
Sbjct: 417 YTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYM 475
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 83/204 (40%), Gaps = 4/204 (1%)
Query: 6 ECQAIL---SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
E Q+++ + M G N ++ AVI+A Q GR EA++ + EM++ P + +
Sbjct: 394 ESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYN 453
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++S + A ++ E F+ + G P+ + + + Y KS A + M +
Sbjct: 454 SLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSK 513
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
I V G + M + VF +L G Y +++ +
Sbjct: 514 GIVP-DVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDE 572
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A ++ + + P++ N L+
Sbjct: 573 AVKIFYDMIENNCVPDVLVVNSLI 596
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E I M E+ + N++I+ + GR +EA + + +++++ +P + T
Sbjct: 570 FDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNT 629
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L+ G V E +E+ S P+++ Y +L K+ +DA +L M T
Sbjct: 630 LLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTT-- 687
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEY 150
KG D S++ V Y
Sbjct: 688 ------------KGCIPDLSSYNTVIY 702
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E ++ + M + G+ N ++N++I + G+ EA K Y E+ PN T A+
Sbjct: 1061 EEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNAL 1120
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILP-SVMCY 96
+ Y +G D + + + G LP S C+
Sbjct: 1121 IRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTCH 1153
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 40/234 (17%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M ++G N + ++I F GR E+ K + EM + C P+ L +
Sbjct: 483 LFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVF 542
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLL----------------------------- 100
AG V++ + F++IK G LP V Y +L+
Sbjct: 543 KAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDAR 602
Query: 101 ---AV---YAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG--EFDDESNWQMVEYVF 152
AV + KS + D AY +L+EM R+ G +I G + D M +F
Sbjct: 603 AYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYM---LF 659
Query: 153 DKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
++ +G L + Y++L++ +G + A +L+E K+GL P ++ N L+
Sbjct: 660 EEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLM 713
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 98/205 (47%), Gaps = 14/205 (6%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +L ++ E G + SFN+++ + + +EA+ + M+K +PN T
Sbjct: 335 AGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKK-DAEPNSST 393
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ + C AG V+E+ E++ +G+ P+++ +++ K+ +++ AY + E
Sbjct: 394 YNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMF-ETA 452
Query: 121 TNRISNIHQVT------GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ R N + VT G KG DD +++ E + D G+ Y +L+
Sbjct: 453 SQRGCNPNSVTYCSLIDGLGKKGNVDDA--YRLFENMLDT----GHNANPVVYTSLIRNF 506
Query: 175 WCLGLRERAARVLDEATKRGLFPEL 199
+ G +E ++ E +RG P+L
Sbjct: 507 FMHGRKEDGHKIFKEMNRRGCQPDL 531
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 9/210 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E +I M + G A ++ ++NAV++ F + G+ ++A + EM+ R P T
Sbjct: 579 AGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVAT 638
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +DE+ F+E KS GI +V+ Y L+ + K R D+AY +L+EM
Sbjct: 639 YGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMM 698
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
T + + + ++K E E N ++ F + Y+ L+ L
Sbjct: 699 KKGLTPNVYTWNSLMDALVKAE---EINEALI--CFQSMKEMKCSPNTYTYSILINGLCR 753
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +A E K+GL P + + ++
Sbjct: 754 VQKYNKAFVFWQEMQKQGLVPNVVTYTTMI 783
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 94/197 (47%), Gaps = 4/197 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E IL M + G+ N ++N++++A + EA+ + M++++C PN T
Sbjct: 685 GRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTY 744
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C +++ +QE++ G++P+V+ Y ++A AK DA L +
Sbjct: 745 SILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKA 804
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEY-VFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + +I+G +N + Y VF++ +G + ++ +LL+AL
Sbjct: 805 NGGTPDAASFNALIEGM--SHANRAIEAYHVFEETRLKGCRINVKACISLLDALNKAECL 862
Query: 181 ERAARV-LDEATKRGLF 196
E+AA V E T R F
Sbjct: 863 EQAAVVGFGENTVRHFF 879
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 16/216 (7%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
NS ++N +I+ G+ EEA EME PN T+ ++ C A + + E F
Sbjct: 390 NSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMF 449
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIK 136
+ G P+ + YC L+ K DDAY L + M + N + + +
Sbjct: 450 ETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMH 509
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
G +D +F ++N G + N ++ ++ G E+ + ++ G
Sbjct: 510 GRKEDGHK------IFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFL 563
Query: 197 PELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
P++ +S+ +H + + G S + M +
Sbjct: 564 PDVRS-----YSILIHGLTKAGQARETSSIFHAMKQ 594
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 86/199 (43%), Gaps = 6/199 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M E G F ++ A + GR E A+ E++ +P+ + +
Sbjct: 204 LLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFG 263
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG VD + + F E+KS G+ P + Y ++ V K+ R +A L +M T R
Sbjct: 264 KAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAY 323
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA--ARVL 187
MI G + ++ + D+L G + +N++L CLG + + A L
Sbjct: 324 AYNTMIMG-YGSAGQFENAYKLLDQLKERGCIPSVVSFNSILT---CLGKKRKVDEALTL 379
Query: 188 DEATKRGLFPELFRHNKLV 206
EA K+ P +N ++
Sbjct: 380 FEAMKKDAEPNSSTYNIII 398
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/240 (18%), Positives = 94/240 (39%), Gaps = 34/240 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E I M +G+ N + N +++ + +FE A + + + C+PN T
Sbjct: 404 AGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVT 463
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ G VD++ F+ + +G + + Y L+ + R +D + + EM+
Sbjct: 464 YCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMN 523
Query: 121 ----------TNRISNIHQVTGQMIKGE--FDDESNWQMVE------------------- 149
N + G + KG F+D + +
Sbjct: 524 RRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQAR 583
Query: 150 ---YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+F + +G+ L R YNA+++ G ++A VL+E + + P + + ++
Sbjct: 584 ETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSII 643
>gi|255575578|ref|XP_002528689.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531861|gb|EEF33678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 271
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +L RM E+G+ N +F +I +F + G+ ++A + M + C PN +T +L
Sbjct: 140 EAKRVLDRMLENGLNPNVVTFTTLINSFCKKGKLQKAYEVIDVMNTIGCQPNVQTYNCLL 199
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
C+ G V+E+ E ++IK S I P + Y ++ + K R ++A LL+E
Sbjct: 200 KGLCYIGKVEEAYEILEDIKKSSIEPDIYTYTAMMDGFCKVGRSEEAMQLLNE 252
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 1/151 (0%)
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
P+ +L A +D + + ++ + G++P + +++ + K N D+A +
Sbjct: 85 PSISDFNDLLMALVIANELDLALNMYSDVSTLGLVPDSWTFSIVIRCHCKRNDADEAKRV 144
Query: 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
LD M N + N + VT + F + Q V D +N G ++ YN LL+ L
Sbjct: 145 LDRMLENGL-NPNVVTFTTLINSFCKKGKLQKAYEVIDVMNTIGCQPNVQTYNCLLKGLC 203
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G E A +L++ K + P+++ + ++
Sbjct: 204 YIGKVEEAYEILEDIKKSSIEPDIYTYTAMM 234
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E Q + + M G A N S+N +I + GR +EA EM P+ T ++
Sbjct: 203 EAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLM 262
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+C G E++E +E+ S G+LP+++ Y ++L K D+A+ LL M ++I
Sbjct: 263 RGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIE 322
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +I+G + +F L +G + Y ++ L GL A
Sbjct: 323 PNIFIYTILIEG-MCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACE 381
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ E G P +N ++
Sbjct: 382 LFREMAVNGCLPNSCTYNVII 402
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 20/216 (9%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M+E G+ + ++NA+++ + + +EA K + M++ C PN R+ +++ +C
Sbjct: 172 VFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHC 231
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRI 124
+G +DE+K E+ + P + Y L+ + + R +A LL EM + N I
Sbjct: 232 KSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLI 291
Query: 125 SNIHQVTGQMIKGEFDD--ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ + G G D+ E M E + + Y L+E + G E
Sbjct: 292 TYSIVLDGLCKHGHLDEAFELLKAMQESKIEP--------NIFIYTILIEGMCTFGKLEA 343
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A + +G+ P + + ++V + + +GG
Sbjct: 344 ARELFSNLFVKGIQPTV-----VTYTVMISGLLKGG 374
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ +M E V N +F +I+ + EA + M + +P+ T
Sbjct: 129 GRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTY 188
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ YC +DE+++ F + G P+V Y +L+ + KS R D+A GLL EM
Sbjct: 189 NALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSH 248
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ +++G F Q + + ++ G + Y+ +L+ L G +
Sbjct: 249 KSLTPDIFTYSTLMRG-FCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLD 307
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +L + + P +F + L+
Sbjct: 308 EAFELLKAMQESKIEPNIFIYTILI 332
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 9/201 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + G + +++ +I + G A++ +ME+ C PN ++ C
Sbjct: 32 LFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLC 91
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIH 128
LV E+ + F E+ GI P V Y +L + R ++A L +M N I N
Sbjct: 92 KDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPN-- 149
Query: 129 QVTGQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+VT ++ D +M+ VF+ + +G + YNAL++ + A +
Sbjct: 150 KVTFTIL---IDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQK 206
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ + ++G P + +N L+
Sbjct: 207 LFNIMDRKGCAPNVRSYNILI 227
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 21/211 (9%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L E S M + G+ + ++++++ F GR EA + +M + PN+ T
Sbjct: 95 LVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFT 154
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT- 121
++ C ++ E+ F+ + G+ P V Y L+ Y ++ D+A L + M
Sbjct: 155 ILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRK 214
Query: 122 ---------NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
N + N H +G++ DE+ + E L + + Y+ L+
Sbjct: 215 GCAPNVRSYNILINGHCKSGRI------DEAKGLLAEMSHKSLTPDIFT-----YSTLMR 263
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+G + A +L E GL P L ++
Sbjct: 264 GFCQVGRPQEAQELLKEMCSYGLLPNLITYS 294
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E Q +L M G+ N +++ V++ + G +EA + M++ + +PN
Sbjct: 269 GRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIY 328
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G ++ ++E F + GI P+V+ Y ++++ K ++A L EM
Sbjct: 329 TILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAV 388
Query: 122 N 122
N
Sbjct: 389 N 389
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M ES + N + +IE G+ E A + + + P T
Sbjct: 304 GHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTY 363
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++S GL +E+ E F+E+ +G LP+ Y +++ + ++ +A L++EM
Sbjct: 364 TVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEM 421
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 102/242 (42%), Gaps = 34/242 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + M G+ ++ ++N++I+ + + GR ++ + + EM+ + C+P+ T
Sbjct: 147 GDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITY 206
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
++++ +C +G + + E ++E+K SG+ P+V+ Y L+ + K + A +M
Sbjct: 207 NSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRR 266
Query: 121 ----TNRISNIHQVTGQMIKGEFDDE-----------SNWQMVEY--------------- 150
N + V G D W +V Y
Sbjct: 267 VGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKE 326
Query: 151 ---VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW 207
+F K+ G + YNAL+ +RA +L+E RG+ P+L + +W
Sbjct: 327 AEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIW 386
Query: 208 SV 209
+
Sbjct: 387 GL 388
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 11/186 (5%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
F+A+ G EEA + + +M++ R P R+ +L + G D K F+++
Sbjct: 66 FDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMI 125
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIHQVTGQMIKGEFD 140
+G P+V Y +++ K + A GL +EM + ++ + G G D
Sbjct: 126 GAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLD 185
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
D Y F+++ + YN+L+ G + E + GL P +
Sbjct: 186 D------TVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVV 239
Query: 201 RHNKLV 206
++ LV
Sbjct: 240 SYSTLV 245
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 87/206 (42%), Gaps = 8/206 (3%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + + +M +GV N S+NA+I F + + A++ E++ P+
Sbjct: 325 KEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTF 384
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ C ++ +K E++ +GI + + Y L+ Y KS + LL+EM
Sbjct: 385 IWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELD- 443
Query: 125 SNIHQVT----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
H+VT +I G ++ + ++Y N G Y A+++ L
Sbjct: 444 ---HEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQV 500
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A + ++ + GL P+ + L+
Sbjct: 501 KAATTLFEQMAQEGLVPDRTAYTSLM 526
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 23/216 (10%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ +E S+M V + S N ++ F + G+ + + + +M P T
Sbjct: 77 GMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTY 136
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G ++ ++ F+E+K G++P + Y ++ Y K R DD +EM +
Sbjct: 137 NIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKS 196
Query: 122 ----------NRISNIHQVTGQMIKG-EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
N + N +G++ KG EF + ++ G + Y+ L
Sbjct: 197 MSCEPDVITYNSLINCFCKSGKLPKGLEF------------YREMKQSGLKPNVVSYSTL 244
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
++A + ++A + + + G P F + LV
Sbjct: 245 VDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLV 280
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + M E GV N ++ A+I+ R +EA K + +M PN + A++ +
Sbjct: 295 LANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFV 354
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
A +D + E E+K GI P ++ Y + + + A +++EM N I
Sbjct: 355 KAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGI 409
>gi|168012346|ref|XP_001758863.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690000|gb|EDQ76369.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 367
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 98/199 (49%), Gaps = 3/199 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG KE + R+ ++G+ ++ +++ + + + +EAI+ ++EM +V C P+
Sbjct: 164 GGRLKEAAEVYQRILDAGLKPTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMI 223
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++SVY AG +E+ F+++++ G +P+V+ +C L+ + + + +EM
Sbjct: 224 YSLMISVYGKAGSAEEAALVFRQLQNDGYIPNVVTWCCLIQAFGWQGKMQEIGAFFNEML 283
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + M+ G + + +F ++ +G Y+ +++A +C +
Sbjct: 284 ASGCLPDLTLYNVMM-GAYGRYGHSVQAAILFRRMQAQGISPNAVSYDTMIQA-YCHSKQ 341
Query: 181 ERAAR-VLDEATKRGLFPE 198
A+ VLD+ T+ G P+
Sbjct: 342 AADAQIVLDQMTRAGFSPD 360
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 91/197 (46%), Gaps = 1/197 (0%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
+ I S++ E+G+ +++N ++ +GG E + +EM+++ PN T +L
Sbjct: 100 AEKIFSKIKENGILPRVETYNTLLSVLSRGGHTERCKELEIEMQRLEVVPNIITFNTLLM 159
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
++ G + E+ E +Q I +G+ P+V+ Y L+ +Y ++++ +A + EM
Sbjct: 160 MHVQGGRLKEAAEVYQRILDAGLKPTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKP 219
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ MI + + + VF +L +GY + + L++A G +
Sbjct: 220 DLMIYSLMIS-VYGKAGSAEEAALVFRQLQNDGYIPNVVTWCCLIQAFGWQGKMQEIGAF 278
Query: 187 LDEATKRGLFPELFRHN 203
+E G P+L +N
Sbjct: 279 FNEMLASGCLPDLTLYN 295
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 94/209 (44%), Gaps = 3/209 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + C+ + M V N +FN ++ QGGR +EA + Y + P T
Sbjct: 129 GGHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPTVVT 188
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ +YC A E+ E F E++ G P +M Y ++++VY K+ ++A + ++
Sbjct: 189 YTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVFRQLQ 248
Query: 121 TN-RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ I N+ VT + F + Q + F+++ G + YN ++ A G
Sbjct: 249 NDGYIPNV--VTWCCLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGRYGH 306
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWS 208
+AA + +G+ P ++ ++ +
Sbjct: 307 SVQAAILFRRMQAQGISPNAVSYDTMIQA 335
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%)
Query: 49 MEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108
++K R PN T VL V AGL +++E F E+ SSG+ + + ++ YA+
Sbjct: 1 VQKGRLKPNGHTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGL 60
Query: 109 WDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYN 168
+ A+ + ++M + I ++ G + + E +F K+ G + YN
Sbjct: 61 FKKAWRMYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYN 120
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
LL L G ER + E + + P + N L+
Sbjct: 121 TLLSVLSRGGHTERCKELEIEMQRLEVVPNIITFNTLL 158
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + + + M SGV SFN++I A+ + G F++A + Y +M + +E TL
Sbjct: 24 GLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGLFKKAWRMYEDMVESGIQADEITL 83
Query: 62 EAVLSVYCFAGLVDESKEQ-FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+LS L E+ E+ F +IK +GILP V Y LL+V ++ + L EM
Sbjct: 84 STLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYNTLLSVLSRGGHTERCKELEIEMQ 143
>gi|356562139|ref|XP_003549331.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 689
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 117/267 (43%), Gaps = 34/267 (12%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVY 68
+ M E G+ N+ +N ++ G ++A K + +M+ C + T +++++Y
Sbjct: 363 VYKEMKEKGMEMNTHLYNTLLAMCADLGLADDAFKIFEDMKSSATCLCDSWTFSSLITIY 422
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS--- 125
+G V E++ E+ SG P++ L+ Y K R DD +++ IS
Sbjct: 423 SCSGNVSEAERMLNEMIESGFQPTIFVLTSLVQCYGKVGRTDDVLKTFNQLLDLGISPDD 482
Query: 126 -------NIHQVTGQMIKGEFDD---ESNWQM---VEYVFDKLNCEGYG----------- 161
N+ T + G+ +D ++N ++ + Y+ + L EG G
Sbjct: 483 RFCGCLLNVMTQTPKEELGKLNDCVEKANPKLGSVLRYLVEGLE-EGDGEFRKEASELFN 541
Query: 162 -----LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ F N+L++ L L ++A +LD ++ ++ ++ WS+ + +
Sbjct: 542 SIADEVKKPFCNSLIDLCVNLNLLDKACELLDLGLTLEIYTDIQSKSQTQWSLHLKSLSL 601
Query: 217 GGAYTAISVWLNKMYEMFMMGEDLPQL 243
G + TA+ W+N + + GEDLP L
Sbjct: 602 GASLTALHAWINDLSKTLESGEDLPPL 628
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/199 (18%), Positives = 84/199 (42%), Gaps = 1/199 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M + GV ++ SF+ +I R +A++ + +M RC+P++ T A++
Sbjct: 186 EKLFDEMLQRGVRPDNVSFSTIISCARICSLPNKAVEWFEKMPSFRCEPDDVTYSAMIDA 245
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
Y AG +D + + ++ + + L+ +Y + +D + EM + +
Sbjct: 246 YGRAGNIDMALRLYDRARTEKWRLDSVTFSTLIKMYGLAGNYDGCLNVYQEMKALGVKSN 305
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ ++ + WQ + ++ ++ G+ Y +LL A E A V
Sbjct: 306 MVIYNTLLDAMGRAKRPWQ-AKSIYTEMTNNGFLPNWATYASLLRAYGRGRYSEDALFVY 364
Query: 188 DEATKRGLFPELFRHNKLV 206
E ++G+ +N L+
Sbjct: 365 KEMKEKGMEMNTHLYNTLL 383
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 81/198 (40%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y C + M GV N +N +++A + R +A Y EM PN T
Sbjct: 284 AGNYDGCLNVYQEMKALGVKSNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFLPNWAT 343
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L Y +++ ++E+K G+ + Y LLA+ A DDA+ + ++M
Sbjct: 344 YASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLADDAFKIFEDMK 403
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ T + + N E + +++ G+ + +L++ +G
Sbjct: 404 SSATCLCDSWTFSSLITIYSCSGNVSEAERMLNEMIESGFQPTIFVLTSLVQCYGKVGRT 463
Query: 181 ERAARVLDEATKRGLFPE 198
+ + ++ G+ P+
Sbjct: 464 DDVLKTFNQLLDLGISPD 481
>gi|356523566|ref|XP_003530408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Glycine max]
Length = 475
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 18/189 (9%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ S MS +G+ + ++ A++E F GR EEA M C PN L A+L +C
Sbjct: 184 LTSEMSSNGLCPDLITYMAIVEGFSNAGRSEEAYSVLKVMRLHGCSPNLVILSAILDGFC 243
Query: 70 FAGLVDESKEQFQEIKSSGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNR 123
+G ++ + E E++ G+ P+V+ Y ++ + K +W +A +LD M H N
Sbjct: 244 RSGSMERALELLDEMEKGGVCTPNVVTYTSVIQSFCKRGQWKEALDILDRMKAFGCHANH 303
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKL---NCEGYGLGMRFYNALLEALWCLGLR 180
++ V G + +FDK +C YG FY++L+ +L +
Sbjct: 304 VTVFTLVESLCADGHVEQGYG------LFDKFVVEHCVSYG---DFYSSLVISLIRIKKL 354
Query: 181 ERAARVLDE 189
E A ++ E
Sbjct: 355 EEAEKLFKE 363
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N VI + G E A+K EM P+ T A++ + AG +E+ + ++
Sbjct: 165 YNLVIRLCCKKGDIETALKLTSEMSSNGLCPDLITYMAIVEGFSNAGRSEEAYSVLKVMR 224
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
G P+++ +L + +S + A LLDEM + + VT + F W
Sbjct: 225 LHGCSPNLVILSAILDGFCRSGSMERALELLDEMEKGGVCTPNVVTYTSVIQSFCKRGQW 284
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ + D++ G L+E+L G E+ + D+
Sbjct: 285 KEALDILDRMKAFGCHANHVTVFTLVESLCADGHVEQGYGLFDK 328
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 98/211 (46%), Gaps = 13/211 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E ++ M G + ++N VI + G++E A + + EM + P+ T
Sbjct: 274 GLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTY 333
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
++L C G E++ F +++S ++P ++C+ +++++ +S D A + +
Sbjct: 334 RSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 393
Query: 121 -----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
N I I + G KG + N + +++ +G + + YN +L L
Sbjct: 394 AGLIPDNVIYTI-LIQGYCRKGMISEAMNLR------NEMLQQGCAMDVVTYNTILHGLC 446
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ A ++ +E T+RGLFP+ + L+
Sbjct: 447 KRKMLGEADKLFNEMTERGLFPDSYTLTILI 477
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 13/208 (6%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + M+E G+ +S + +I+ + G + A++ + +M++ R + T +L
Sbjct: 453 EADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLL 512
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ G +D +KE + ++ S ILP+ + + +L+ +A+ + DEM + I
Sbjct: 513 DGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIK 572
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW-------CLG 178
+ MIKG + N E +K+ EG+ YN L+ G
Sbjct: 573 PTVMICNSMIKG-YCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFG 631
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
L ++ E + GL P++F +N ++
Sbjct: 632 LVKKM-----EEKQGGLVPDVFTYNSIL 654
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I +S SGV N + N ++ A + G+ E+ E+++ P+ T ++S Y
Sbjct: 212 IYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYS 271
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
GL++E+ E + S G P V Y ++ K +++ A + EM
Sbjct: 272 SQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEM 321
>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 116/280 (41%), Gaps = 47/280 (16%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + +L M E G+ N +FN++I+A RQ E + + + P E+ L
Sbjct: 508 GLVESSIMLLIAMIEKGIKPNVVTFNSIIDASRQSPTLEYGVHGSSQAVEY---PTEQ-L 563
Query: 62 EAVLSVYCFAGLVDESK-----EQ-------------------------FQEIKSSGILP 91
++L F + + EQ FQ++ I P
Sbjct: 564 SSMLIDGAFQNKTGDDRILKMFEQLAAEKAGHREKDRKGRQDQHCILWLFQKMHELNIKP 623
Query: 92 SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYV 151
+V+ + +L ++ N ++DA LL + + ++ VT ++ G E W + +
Sbjct: 624 NVVTFSAILNACSRCNSFEDASMLLGALRLFD-NQVYGVTHGLLMGY--REQVWFQAQTL 680
Query: 152 FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV-- 209
FD++ FYNAL + LW G R A V+ E +R ++ K WS+
Sbjct: 681 FDEMRRMDSSTASAFYNALTDMLWQFGQRRGAEMVVTEGRRRNVW-------KGEWSISC 733
Query: 210 -DVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
D+H M G A + WL M+ G +LP++ T++
Sbjct: 734 LDLHLMSCGAACAMVHSWLLNMHSTLFEGSELPKIVTILT 773
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 63/120 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+++ Q +LS M + G+ R++ ++N ++ +GG+ + A + EM R P T
Sbjct: 298 GMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTY 357
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ A L++++ ++E+K I + Y ++ +YAK R+D+A G EM +
Sbjct: 358 STMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMES 417
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 89/207 (42%), Gaps = 6/207 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + ++N+++ G +E A K EM++ + T L C G
Sbjct: 275 MLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQ 334
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+D ++ +E+ S + P+V+ Y ++ AK+N +DA L +EM IS + +V+
Sbjct: 335 IDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSIS-VDRVSYN 393
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ G + + ++ G + YNALL G+ + R+ +E
Sbjct: 394 TMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAW 453
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGGAY 220
++P N L +S + +GG +
Sbjct: 454 NIYP-----NTLTYSTMIDVYTKGGMF 475
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 36/182 (19%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N ++ + + GRF+EAI EME + T A+LS Y G+ DE + F+E+
Sbjct: 391 SYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEM 450
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
K+ I P+ + Y ++ VY K + +A + +
Sbjct: 451 KAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKD-------------------------- 484
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
F K E + + FY +++++L GL E + +L ++G+ P + N
Sbjct: 485 -------FKKAQLE---VDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIKPNVVTFNS 534
Query: 205 LV 206
++
Sbjct: 535 II 536
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 37/183 (20%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL-VDESKEQFQE 83
SF+A+I A+ + G F +A+ + M PN + +++ + D + F E
Sbjct: 215 SFSAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLISYNSLIDAGAKGEVDFDVVVKFFDE 274
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143
+ + GI+P + Y LL+V A W+ A LL EM I ++ F
Sbjct: 275 MLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGI----------VRDAFT--- 321
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
YN L+ L G + A RVL+E + R ++P + ++
Sbjct: 322 -----------------------YNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYS 358
Query: 204 KLV 206
++
Sbjct: 359 TMI 361
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERT 60
G + + + M GV N S+N++I+A +G F+ +K + EM P+ T
Sbjct: 227 GHFSDAVDLFRSMRSWGVYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLT 286
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++LSV G+ + +++ E+ GI+ Y L K + D A +L+EM
Sbjct: 287 YNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMS 346
Query: 121 TNRISNIHQVTGQMIKG 137
+ R+ MI G
Sbjct: 347 SRRVWPTVVTYSTMIDG 363
>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 687
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 9/220 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +KE +L +M GV+ N S+N+ I+A +G R++EA+ EM V P +
Sbjct: 300 GRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVIS 359
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ + G E+ E +E+ + GI P+ + Y L AK +W+ A LL M
Sbjct: 360 YNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMS 419
Query: 121 T----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
T I + + +G+ W+ + ++ G + YN+ +EA
Sbjct: 420 TVGSDPDIISFNSAIDACGRGQ-----QWETAVELLREMPTAGLTPNVITYNSAIEACGR 474
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ A + E RGL P + +N ++ + WE
Sbjct: 475 SARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWE 514
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 3/217 (1%)
Query: 1 GGLYKECQAILSRM--SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE 58
GG +KE +L++M G+ + ++N+ I A GGR++EA+ +M PN
Sbjct: 158 GGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNL 217
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T + + +E+ + +E+ G PS Y ++ AK RW +A LL +
Sbjct: 218 ITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQ 277
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M TN I ++ + W+ + +++ +G + YN+ ++A
Sbjct: 278 MLTNDIP-ADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGD 336
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
+ A +L E T GL P + +N + V+ W
Sbjct: 337 RWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRW 373
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 9/220 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +KE +L +M GV N ++N+ I A +G R+EEA+ E+ + P+ RT
Sbjct: 195 GGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRT 254
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ G E+ + ++ ++ I V+ Y ++A + RW +A LL++M
Sbjct: 255 YNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMR 314
Query: 121 TNRIS----NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
T +S + + KG+ W+ + ++ G + YN+ A
Sbjct: 315 TQGVSPNVISYNSAIDACAKGD-----RWKEALDLLREMTTVGLVPTVISYNSATAACAV 369
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
G A +L E +G+ P +N + + WE
Sbjct: 370 NGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWE 409
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 9/220 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +++ +L MS G + SFN+ I+A +G ++E A++ EM PN T
Sbjct: 405 GGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVIT 464
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ + + E+ F+E+ + G+ P+V+ Y ++ AK +W+ A LL M
Sbjct: 465 YNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMP 524
Query: 121 TNRIS----NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
++ + + KGE W++ + + G + YN+ + A
Sbjct: 525 ARGVAPDVISYNSAIEACGKGE-----QWELALQLLKGMPTRGPKPDIISYNSAVTACAK 579
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
G A +L + GL P + + + W+
Sbjct: 580 SGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWD 619
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 11/200 (5%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++E + M G++ N ++N++I+A +G ++E A++ M P+ + +
Sbjct: 478 WQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNS 537
Query: 64 VLSVYCFAGLVDESKEQF-QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+ C G E Q + + + G P ++ Y + AKS RW +A GLL +M T
Sbjct: 538 AIEA-CGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLKDMATV 596
Query: 123 RISNIHQVTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
++ G I KGE W + + ++ G + Y+A ++A G
Sbjct: 597 GLTPNTVSYGAAIHACGKGE-----QWDVAVRILKEMQTHGATPNLITYSAAIDACAKQG 651
Query: 179 LRERAARVLDEATKRGLFPE 198
+ A +L + ++GL P+
Sbjct: 652 RWKEAVDLLTDLRRQGLTPD 671
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 49/104 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E +L M+ G+ N+ S+ A I A +G +++ A++ EM+ PN T
Sbjct: 581 GRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLITY 640
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
A + G E+ + +++ G+ P Y +++ + +
Sbjct: 641 SAAIDACAKQGRWKEAVDLLTDLRRQGLTPDAQTYLTVISAFQR 684
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK---- 136
+E+ + G+ P V+ Y +A +K RW +A LL +M ++ +T ++
Sbjct: 133 LREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQM----VAPTEGITPDVVTYNSA 188
Query: 137 -GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR--ERAARVLDEATKR 193
+ W+ + +++ +G + YN+ + A C R E A +L+E ++
Sbjct: 189 IAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGA--CAKGRRWEEAMDLLEEVIEQ 246
Query: 194 GLFPELFRHNKLV 206
G P +N ++
Sbjct: 247 GFPPSTRTYNPVI 259
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 91/191 (47%), Gaps = 9/191 (4%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
+RM E G ++ ++ A + GR EA+ + EM + C+PN T ++ C
Sbjct: 279 ARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKE 338
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131
G +DE+ + E+ G+ PSV+ + L+ Y K +DA G+L M + ++ +
Sbjct: 339 GRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTY 398
Query: 132 GQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
++I +G+ D + + + V KL+ + + YN L+ L +G+ + A+R+
Sbjct: 399 NELICGFCRGKSMDRAMALLNKMVESKLSPD-----VVTYNTLIHGLCEVGVVDSASRLF 453
Query: 188 DEATKRGLFPE 198
+ G P+
Sbjct: 454 RLMIRDGFSPD 464
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 8/205 (3%)
Query: 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
RN+ S+ +I + G+ EA++ + M + C P RT ++ C +G E+
Sbjct: 253 RNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSL 312
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140
F E++ G P+V Y +L+ K R D+A +L+EM ++ V + G +
Sbjct: 313 FGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAP-SVVPFNALIGSYC 371
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEATKRGLFPEL 199
+ V + + +R YN L+ +C G +RA +L++ + L P++
Sbjct: 372 KRGMMEDAVGVLGLMESKKVCPNVRTYNELICG-FCRGKSMDRAMALLNKMVESKLSPDV 430
Query: 200 FRHNKLVWSVDVHRMWEGGAYTAIS 224
+N L +H + E G + S
Sbjct: 431 VTYNTL-----IHGLCEVGVVDSAS 450
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 90/206 (43%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + M G + + +FNA + + GR EA + +++ NE
Sbjct: 444 GVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAY 503
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ YC AG ++ + F+ + + LP+ + + +++ K + DA L+++M
Sbjct: 504 TALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAK 563
Query: 122 NRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +H T ++ E E ++ + ++L GY + Y A ++A G
Sbjct: 564 FDVKPTLH--TYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRL 621
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E A ++ + G+ + F +N L+
Sbjct: 622 EEAEEMVIKIKNEGVLLDSFIYNLLI 647
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/271 (19%), Positives = 94/271 (34%), Gaps = 63/271 (23%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC------ 54
G + ++ RM NS +FN +I+ R+ G+ ++A+ +M K
Sbjct: 513 AGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHT 572
Query: 55 -----------------------------DPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
PN T A + YC G ++E++E +IK
Sbjct: 573 YNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIK 632
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----------------------HTN 122
+ G+L Y +L+ Y D A+G+L M H
Sbjct: 633 NEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKK 692
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEY-----VFDKLNCEGYGLGMRFYNALLEALWCL 177
SN + + D+ W +++ +F+K+ G + Y+ L+ L +
Sbjct: 693 EGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKV 752
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWS 208
G A + + G+ P HN L+ S
Sbjct: 753 GRLNVAFSLYHHMREGGISPSEIIHNSLLSS 783
>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 11/193 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL KE + ++M E G+ + ++ ++ F + G+ E A++ + EM C PN T
Sbjct: 188 GLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTF 247
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ ++ G E + F+EIK+S +P ++ + LLAV+ ++ + G+ EM
Sbjct: 248 NALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR 307
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+I G FD + ++ ++ G + YNA+L AL
Sbjct: 308 AGFVPERDTYNTLISAYSRCGSFDQAMD------IYKRMLEAGITPDLSTYNAVLAALAR 361
Query: 177 LGLRERAARVLDE 189
GL E++ ++ E
Sbjct: 362 GGLWEQSEKIFAE 374
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 106/250 (42%), Gaps = 36/250 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + I RM E+G+ + ++NAV+ A +GG +E++ K + EM+ RC PNE T
Sbjct: 328 GSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTY 387
Query: 62 EAVLSVYC---------------FAGLVD--------------------ESKEQFQEIKS 86
++L Y +G+++ E++ F E+K
Sbjct: 388 CSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKR 447
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
G P + +L++Y + + +L+ M+ + + ++ E N++
Sbjct: 448 KGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSE-NFE 506
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
E V ++ +G YN ++ A G + A+R+ E + GL P++ +N V
Sbjct: 507 RSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFV 566
Query: 207 WSVDVHRMWE 216
S M+E
Sbjct: 567 ASYAADSMFE 576
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 7/209 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + M +G D++N +I A+ + G F++A+ Y M + P+ T
Sbjct: 293 GMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTY 352
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
AVL+ GL ++S++ F E+K P+ + YC LL YA L +E+
Sbjct: 353 NAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEI-- 410
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMV---EYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
S + + ++K S ++ E F +L +G+ + NA+L
Sbjct: 411 --CSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQ 468
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVW 207
+ + +L+ + G P L +N L++
Sbjct: 469 MFTKTNEILNFMNESGFTPSLATYNSLMY 497
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 85/213 (39%), Gaps = 16/213 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVE-MEKVRCDPNERT 60
G Y+E + +M E G ++N ++ + + G IK E M+ P+E T
Sbjct: 47 GRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYT 106
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ L +E+ F+++KS G +P + Y LL VY KS R +A +L EM
Sbjct: 107 YNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREME 166
Query: 121 TNRISNIHQVTGQMIKGEFDD-------ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
N S +I D E QMVE G L + Y LL
Sbjct: 167 VNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVE--------GGINLDVFTYTTLLSG 218
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G E A RV E G P + N L+
Sbjct: 219 FVRAGKDESAMRVFAEMRAAGCKPNICTFNALI 251
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 92/206 (44%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + + M +GV + ++N +I R+G EEA + +M+ + P++ T
Sbjct: 82 GMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVT 141
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L VY + E+ E +E++ +G PS++ Y L++ YA+ +A L ++M
Sbjct: 142 YNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMV 201
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I N+ T + F + VF ++ G + +NAL++ G
Sbjct: 202 EGGI-NLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKF 260
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+V +E P++ N L+
Sbjct: 261 AEMMKVFEEIKNSCCVPDIVTWNTLL 286
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 60/117 (51%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
++ + IL+ M+ESG + ++N+++ + FE + + E+ P+ +
Sbjct: 469 MFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYN 528
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
V+ YC G + E+ F E++ SG++P V+ Y +A YA + ++DA ++ M
Sbjct: 529 TVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRYM 585
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 53/122 (43%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + + S + ++N ++ F Q G E + EM++ P T
Sbjct: 258 GKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTY 317
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S Y G D++ + ++ + +GI P + Y +LA A+ W+ + + EM
Sbjct: 318 NTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKD 377
Query: 122 NR 123
R
Sbjct: 378 GR 379
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 56/117 (47%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ + +L + G+ ++ S+N VI A+ + GR +EA + + EM + P+ T
Sbjct: 505 FERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNT 564
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y + +++ + + + G P+ Y ++ Y K N DDA + +H
Sbjct: 565 FVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAIMFISSLH 621
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE I S M ESG+ + ++N + ++ FE+AI M K C PN+ T
Sbjct: 538 GRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTY 597
Query: 62 EAVLSVYC 69
+V+ YC
Sbjct: 598 NSVVDGYC 605
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + I+++M + G ++ +FN +I A R EEA+ E+ P+ T
Sbjct: 349 GELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTF 408
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G F+E+KSSG P + Y +L+ + +A LL EM +
Sbjct: 409 NILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMES 468
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N VT I + + E VFD+++ G +N L++ L +
Sbjct: 469 NGCPR-STVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRID 527
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++++ K GL P +N ++
Sbjct: 528 DATELIEQMVKEGLQPSNITYNSIL 552
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 11/205 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L MS VA + +F +++ F + G E A++ +M + C P T+ +++ YC
Sbjct: 217 MLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYC 276
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNRIS 125
G V+++ Q+ + G P + Y + ++ A ++D M H +
Sbjct: 277 KMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVF 336
Query: 126 NIHQVTGQMIK-GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ V + K GE D+ +V + D+ G +N L+ AL E A
Sbjct: 337 TYNTVINCLSKNGELDEAKG--IVNQMVDR----GCLPDTTTFNTLIVALCSQNRLEEAL 390
Query: 185 RVLDEATKRGLFPELFRHNKLVWSV 209
+ E T +GL P+++ N L+ ++
Sbjct: 391 DLARELTVKGLSPDVYTFNILINAL 415
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 4/199 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G R++ ++N +I+A + R EEA + + +M+ + T ++ C
Sbjct: 462 LLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLC 521
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A +D++ E +++ G+ PS + Y +L Y K A +L+ M N I
Sbjct: 522 KAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFE-IDV 580
Query: 130 VT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT G +I G Q+ + + +G + YN ++++L+ A +
Sbjct: 581 VTYGTLING-LCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFR 639
Query: 189 EATKRGLFPELFRHNKLVW 207
E T+ G P+ + K+V+
Sbjct: 640 EMTEVGEPPDALTY-KIVF 657
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 87/209 (41%), Gaps = 1/209 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K +++ + M++ G+ + + N +I+A + + A+ EM P+E T
Sbjct: 173 GSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETT 232
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ + G ++ + ++ +G P+ + +L+ Y K R +DA G + +
Sbjct: 233 FTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEI 292
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ QVT + V D + EG+ + YN ++ L G
Sbjct: 293 ADGFEP-DQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGEL 351
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ A ++++ RG P+ N L+ ++
Sbjct: 352 DEAKGIVNQMVDRGCLPDTTTFNTLIVAL 380
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N + Q G A+K M + DP+ T V++ G +DE+K ++
Sbjct: 302 TYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM 361
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G LP + L+ NR ++A L E+ +S T ++ +
Sbjct: 362 VDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSP-DVYTFNILINALCKVGD 420
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ +F+++ G YN L++ L +G A +L E G +N
Sbjct: 421 PHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNT 480
Query: 205 LV 206
++
Sbjct: 481 II 482
>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
Length = 783
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 96/198 (48%), Gaps = 5/198 (2%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
+++MSE G ++ S+N +++A + +EA ++M+ PN+ T ++ YC
Sbjct: 236 VNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCR 295
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
GL+ E+ + + + + +LP+V Y ML+ + + D+A+ + DEM +
Sbjct: 296 LGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVT 355
Query: 131 TGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+I G ++ D S V + ++++ +G YN +L+ + G A LD
Sbjct: 356 YNTLIDGCSQWRDSSE---VYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLD 412
Query: 189 EATKRGLFPELFRHNKLV 206
+ + GL P+ +N L+
Sbjct: 413 KMEENGLSPDCVTYNTLI 430
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 1/193 (0%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L +E + +L M G++ N ++N ++ + + G +EA K M + P T
Sbjct: 263 LLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYN 322
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ +C G +DE+ E++ +LP V+ Y L+ ++ + Y L++EM
Sbjct: 323 MLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKK 382
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ + VT +I + N DK+ G YN L+ A G +
Sbjct: 383 GVK-CNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGK 441
Query: 183 AARVLDEATKRGL 195
A R++DE T +GL
Sbjct: 442 AFRMMDEMTSKGL 454
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 98/217 (45%), Gaps = 2/217 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L S+ G + S+ +I + + + + A+ + EM++ + P+ T +V+
Sbjct: 476 EAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVI 535
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C + VD++ ++ E+ +G++P Y +++ + + A+ +EM N
Sbjct: 536 GGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFK 595
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+++G E + +F+ L +G + + YN ++ +L G E A
Sbjct: 596 PDVYTCNILLRG-LCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYD 654
Query: 186 VLDEATKRGLFPELFRHNKLVWSV-DVHRMWEGGAYT 221
+L E + L P+ + + ++ ++ D R+ E +T
Sbjct: 655 LLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFT 691
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 89/240 (37%), Gaps = 36/240 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP----- 56
GL KE ++ M+ + + ++N ++ F G+ +EA + EMEK+ P
Sbjct: 297 GLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTY 356
Query: 57 ------------------------------NERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
N T +L C G + E+ +++
Sbjct: 357 NTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEE 416
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
+G+ P + Y L+ Y K+ + A+ ++DEM T++ I T I E
Sbjct: 417 NGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEM-TSKGLKIDTWTLNTILHCLCVEKKLD 475
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ + GY L Y L+ + +RA + DE +R + P +N ++
Sbjct: 476 EAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVI 535
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 46/89 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ ++ + + + G + ++N +I + + G+FE A EME + P++ T
Sbjct: 612 GMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTY 671
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGIL 90
+ +++ AG + E++E ++ SGI+
Sbjct: 672 KVIIAALTDAGRIKEAEEFTLKMVESGIV 700
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 9/208 (4%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + IL+ M E G+ + ++NA+I + + GR E A++ ME C PNERT ++
Sbjct: 372 ESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELI 431
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ V ++ ++ S + PS++ Y L+ V K+ +D AY LLD + N +
Sbjct: 432 CGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGL- 490
Query: 126 NIHQVTGQMIKGEFDDE--SNWQMVEY--VFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
V Q F D + +M E +F+ L +G Y AL++ G +
Sbjct: 491 ----VPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKID 546
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
A +L+ P +N L++ V
Sbjct: 547 EAISLLERMHSEDCLPNSSTYNSLIYGV 574
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 1/198 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E ++ +M E ++ +I A R E + + EM + C+PN T
Sbjct: 297 AGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHT 356
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C +DES+ E+ G++PSV+ Y L+ Y + R + A +L M
Sbjct: 357 YTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLME 416
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+N + ++I G F + + K+ + YN+L+ G
Sbjct: 417 SNNCRPNERTYNELICG-FSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHF 475
Query: 181 ERAARVLDEATKRGLFPE 198
+ A ++LD + GL P+
Sbjct: 476 DSAYKLLDLLKENGLVPD 493
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +++ MS+ GV ++ +IE + G F+ A + + +M P+ T
Sbjct: 578 GKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTY 637
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A + YC +G V E++ + +G++P + Y +L++ Y + DA+ +L M
Sbjct: 638 TAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRM 695
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + + E G+ N + A+I+ + G+ +EAI M C PN T +++ C
Sbjct: 516 LFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVC 575
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-NRISNIH 128
G V E + + G+ P+V Y +L+ + +D A + ++M + +++
Sbjct: 576 KEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVY 635
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
T + + N + E + ++ G Y L+ A LGL A VL
Sbjct: 636 TYTAFI--HTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLK 693
Query: 189 EATKRGLFPELFRHNKLVW 207
G P N L+W
Sbjct: 694 RMLDAGCDPSHPIWNNLIW 712
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/239 (17%), Positives = 96/239 (40%), Gaps = 12/239 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + +L + E+G+ + +++ I+ + R EEA + +++ NE
Sbjct: 472 AGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVM 531
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ +C AG +DE+ + + S LP+ Y L+ K + + +++ M
Sbjct: 532 YTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMS 591
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ T ++ E E ++ VF+++ G+ + Y A + G
Sbjct: 592 KMGVKPT-VATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNV 650
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAISVWLN 228
+ A ++ + G+ P+ + L+ + + + RM + G + +W N
Sbjct: 651 KEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNN 709
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 9/205 (4%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +S++ ++G++ +S ++ ++I + + A K + M C NE + ++
Sbjct: 232 EANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTII 291
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI- 124
C AG +DE F++++ P+V Y +++ ++R + L +EM
Sbjct: 292 HGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCE 351
Query: 125 SNIHQVT---GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N+H T M K DES + +++ +G + YNAL+ G E
Sbjct: 352 PNVHTYTVMVDAMCKERKLDES-----RRILNEMMEKGLVPSVVTYNALIRGYCEEGRIE 406
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +L P +N+L+
Sbjct: 407 AALEILGLMESNNCRPNERTYNELI 431
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 85/216 (39%), Gaps = 34/216 (15%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N ++ + +E + Y EM PN TL +++ Y G + E+ +I
Sbjct: 181 SYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKI 240
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRISNIHQVTGQMIKGEF 139
+G+ P Y L+ Y ++N + AY + + M N +S + G G
Sbjct: 241 FQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRI 300
Query: 140 DD-----------------ESNWQMVEYVF-DKLNCEGYGL-----------GMRFYNAL 170
D+ + ++ +F + N EG L + Y +
Sbjct: 301 DEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVM 360
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
++A+ + + R+L+E ++GL P + +N L+
Sbjct: 361 VDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALI 396
>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
Length = 886
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 91/198 (45%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+I M +SG+ + +N ++EAF + G + AI+ + M+K R P+ RT ++ +
Sbjct: 482 SIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGF 541
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG + + + ++ SG P+VM Y L+ + ++ + A +LD+M I+
Sbjct: 542 AVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNE 601
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+++G + EY F K+ G L + Y LL A G + A V
Sbjct: 602 HTYTIIMRGYAASGDIGKAFEY-FTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTR 660
Query: 189 EATKRGLFPELFRHNKLV 206
E + + + F +N L+
Sbjct: 661 EMSFQKIPRNTFIYNILI 678
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 100/226 (44%), Gaps = 4/226 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L +MS +G+A N ++ ++ + G +A + + ++++ + E +L
Sbjct: 587 SVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 646
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNI 127
C +G + + +E+ I + Y +L+ +A+ +A LL +M + I NI
Sbjct: 647 CKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNI 706
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
H T + + Q E V ++ G ++ + L++ + L +RA +
Sbjct: 707 HTFTSYI--NACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRALKCF 764
Query: 188 DEATKRGLFPELFRHNKLVWS-VDVHRMWEGGAYTAISVWLNKMYE 232
+E GL P+ ++ LV S + + EG YT I +M+E
Sbjct: 765 EEMKSAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGIFSVCREMFE 810
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 22/202 (10%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+KE + L + N ++ +I A Q G + A + EME E ++
Sbjct: 343 LFKEAKTKLDNL-------NGIIYSNIIHAHCQSGNMDRAEELVREME-------EDGID 388
Query: 63 AVLSVY-----CFAGLVDESK--EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
A + VY + + DE K F+ +K G P+++ Y L+ +Y K + A +
Sbjct: 389 APIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAI 448
Query: 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
EM ++ I + ++ +I G F ++ +F+ + G YN L+EA
Sbjct: 449 SKEMESHGIKHNNKTYSMLING-FIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFC 507
Query: 176 CLGLRERAARVLDEATKRGLFP 197
+G +RA R+ + K + P
Sbjct: 508 KMGNMDRAIRIFERMQKERMQP 529
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L +M E G+ N +F + I A + G + A EM V PN +T ++
Sbjct: 689 EAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLI 748
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ L D + + F+E+KS+G+ P Y C++ ++ +++
Sbjct: 749 KGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSRAT 791
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RN+ +N +I+ + + G EA +M++ PN T
Sbjct: 650 GRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTF 709
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ ++ C AG + ++ QE+ G+ P+V + L+ +A+ + D A +EM +
Sbjct: 710 TSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMKS 769
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 75/181 (41%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
F ++ + + G A + M +PN +++ Y AG + + +E+K
Sbjct: 254 FGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMK 313
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
S GI +V+ Y +L++ Y K+N A L E T ++ N++ + I N
Sbjct: 314 SEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKT-KLDNLNGIIYSNIIHAHCQSGNM 372
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
E + ++ +G + Y++++ + ++ V + + G P + + L
Sbjct: 373 DRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCL 432
Query: 206 V 206
+
Sbjct: 433 I 433
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1080
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 35/240 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL + L M E+G+ N+ ++N ++ + G EA++ Y M P+ RT
Sbjct: 139 GGL-RSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRT 197
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
++ + V+ +E+++ G+ P+V Y + + V ++ R+D+AY +L +M
Sbjct: 198 YSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKME 257
Query: 120 ----------HT---------NRISNIHQVTGQMIKGE--------------FDDESNWQ 146
HT RIS+ V +M K + F D + Q
Sbjct: 258 NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQ 317
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V +++ + +GY + Y A+++AL +G A + DE ++G+ PE + +N L+
Sbjct: 318 SVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI 377
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 85/196 (43%), Gaps = 1/196 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + + NAV+ + GR A + + E++ + P+ T ++ A
Sbjct: 431 MKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASK 490
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
DE+ + F ++ + +P V+ L+ K+ R D+A+ + ++ +
Sbjct: 491 FDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNT 550
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ G E + V ++ +++ Y + YN +L+ L G A +L T +
Sbjct: 551 LLAG-LGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTK 609
Query: 194 GLFPELFRHNKLVWSV 209
G P+L +N +++ +
Sbjct: 610 GCIPDLSSYNTVIYGL 625
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 5/203 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + M + G+ S+N++I F + RF +A++ + M+ PN T +
Sbjct: 353 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFI 412
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ Y +G ++ ++++ +KS GI+P V+ +L AKS R A + E+ +S
Sbjct: 413 NYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVS 472
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKL--NCEGYGLGMRFYNALLEALWCLGLRERA 183
MIK + V+ +D + NC L + N+L++ L+ G + A
Sbjct: 473 PDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAV---NSLIDTLYKAGRGDEA 529
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
R+ + + L P +N L+
Sbjct: 530 WRIFYQLKEMNLEPTDGTYNTLL 552
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 106/260 (40%), Gaps = 45/260 (17%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + + M E G + ++N +++A + R EE +K EM + + T ++S
Sbjct: 775 EGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISG 834
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT------ 121
+ ++++ + + + S G P+ Y LL K+ R +DA L +EM
Sbjct: 835 LVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKAN 894
Query: 122 ----NRISNIHQVTG------QMIKGEFDDESNWQMVEY--VFDKLNCEGYGL--GMRF- 166
N + N H++ G + + D N + Y + D L C+ L G+ +
Sbjct: 895 CTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTL-CKAGQLNDGLTYF 953
Query: 167 --------------YNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
YN L++ L E A + +E K+G+ P L+ +N L+ +H
Sbjct: 954 RQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLI----LH 1009
Query: 213 RMWEGGAYTAISVWLNKMYE 232
G A A KMYE
Sbjct: 1010 LGKAGKAAEA-----GKMYE 1024
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
++ E G+ + ++N +I+ + R EEA+ + EM+K PN T +++ AG
Sbjct: 955 QLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAG 1014
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ + ++E+ + G P+V Y L+ Y+ S D AY M
Sbjct: 1015 KAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRM 1061
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + +M +S + ++ +++ F G + ++ + M+ + N
Sbjct: 279 GRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAY 338
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
AV+ C G V E+ E F E+K GI+P Y L++ + K++R+ DA L M
Sbjct: 339 TAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHM 396
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E I M E+ + + N++I+ + GR +EA + + +++++ +P + T
Sbjct: 491 FDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNT 550
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L+ G V E +E+ S P+++ Y +L K+ +DA +L M T
Sbjct: 551 LLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTT-- 608
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEY 150
KG D S++ V Y
Sbjct: 609 ------------KGCIPDLSSYNTVIY 623
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 77/193 (39%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G N ++ AVI+A Q GR EA++ + EM++ P + + +++S + A
Sbjct: 326 MKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADR 385
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ E F+ + G P+ + + + Y KS A + M + I V G
Sbjct: 386 FGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVP-DVVAGN 444
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ M + VF +L G Y +++ + A ++ + +
Sbjct: 445 AVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIEN 504
Query: 194 GLFPELFRHNKLV 206
P++ N L+
Sbjct: 505 NCVPDVLAVNSLI 517
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 85/208 (40%), Gaps = 15/208 (7%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ + GV+ + +N++I + A + EM+++ C P+E T +L
Sbjct: 738 EAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLL 797
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ ++E + +E+ G + + Y +++ KS R + A L + + S
Sbjct: 798 DAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFS 857
Query: 126 NIHQVTGQMIK-----GEFDDESNW--QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
G ++ G +D N +M+EY K NC YN LL G
Sbjct: 858 PTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGC-KANCT-------IYNILLNGHRIAG 909
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
E+ + + +G+ P++ + ++
Sbjct: 910 NTEKVCHLFQDMVDQGINPDIKSYTIII 937
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E ++ + M + G+ N ++N++I + G+ EA K Y E+ PN T A+
Sbjct: 982 EEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNAL 1041
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99
+ Y +G D + + + G LP+ Y L
Sbjct: 1042 IRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTYMQL 1076
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/121 (18%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K C + M + G+ + S+ +I+ + G+ + + + ++ ++ +P+ T
Sbjct: 909 GNTEKVCH-LFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLIT 967
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ + ++E+ F E++ GI+P++ Y L+ K+ + +A + +E+
Sbjct: 968 YNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELL 1027
Query: 121 T 121
T
Sbjct: 1028 T 1028
>gi|2244996|emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thaliana]
gi|7268388|emb|CAB78681.1| salt-inducible protein homolog [Arabidopsis thaliana]
Length = 777
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 112/268 (41%), Gaps = 33/268 (12%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSV 67
AI M E G++ +N ++ +EA + + +M+ CDP+ T ++++V
Sbjct: 446 AIYREMKEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLITV 505
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
Y +G V +++ +I+ +G P++ ++ Y K+ + DD D++ I+
Sbjct: 506 YACSGRVSKAEAALLQIREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPD 565
Query: 128 HQVTGQMIKGEFDDESN----------------WQMVEYVFDKLNCE------------- 158
+ G ++ S Q+V+ + ++ NCE
Sbjct: 566 DRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELID 625
Query: 159 --GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
G + + N L++ L ERA +L + ++ L + WS+ + +
Sbjct: 626 SIGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSL 685
Query: 217 GGAYTAISVWLNKMYEMFM-MGEDLPQL 243
G A TA+ VW+N + E + GE+ P L
Sbjct: 686 GAALTALHVWMNDLSEAALESGEEFPPL 713
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 87/202 (43%), Gaps = 1/202 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ + + M E G+ ++ +F +I RQ G + A++ + +M C+P+ T+ A+
Sbjct: 267 EKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAM 326
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ Y AG VD + + ++ + + L+ +Y S +D + +EM +
Sbjct: 327 IDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGV 386
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ ++I + WQ + ++ L G+ Y AL+ A + A
Sbjct: 387 KPNLVIYNRLIDSMGRAKRPWQ-AKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDAL 445
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ E ++GL + +N L+
Sbjct: 446 AIYREMKEKGLSLTVILYNTLL 467
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y C I M GV N +N +I++ + R +A Y ++ PN T
Sbjct: 368 SGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWST 427
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ Y A D++ ++E+K G+ +V+ Y LL++ A + D+A+ + +M
Sbjct: 428 YAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDM 486
>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Brachypodium distachyon]
Length = 746
Score = 68.2 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 11/243 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K ++ RM + V ++ AV++ + GR E+A K EM PNE
Sbjct: 397 GRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVF 456
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V++ +C G VD + + + ++GI P+V+ Y ++ A+ + +A L EM
Sbjct: 457 SPVITGFCKLGEVDRASRVWDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIE 516
Query: 122 NR-ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + NI + M++G F + Q + + D L G Y+ L+ L +G
Sbjct: 517 AKCVPNIMTYS-SMVRGYFQIGDSSQALSFWEDMLRI-GCTPNAVTYSVLINGLCNVGRS 574
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
+ A V RG P+ + ++ V M + G L Y+M G+
Sbjct: 575 KDAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSGMVDAG--------LRLFYDMLARGDTH 626
Query: 241 PQL 243
P +
Sbjct: 627 PDV 629
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 12/211 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + A++ M GV +++FN V+ A + G A K + M+ C P+ T
Sbjct: 327 AGRVDDAVALVHEMVVDGVVA-AEAFNPVLGAMLRTGDVTGAAKLFSFMQLKGCAPSAAT 385
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L G + + ++ + ++P VM Y ++ + R +DA +++EM
Sbjct: 386 YNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEMR 445
Query: 121 T-----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
+ N +TG GE D S V+D + G + Y+A+++ L
Sbjct: 446 SKGLVPNEFVFSPVITGFCKLGEVDRASR------VWDTMVAAGIKPNVVLYSAMIDGLA 499
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G A + E + P + ++ +V
Sbjct: 500 RCGKMTEAELLFREMIEAKCVPNIMTYSSMV 530
Score = 41.6 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G N+ +++ +I GR ++A+ + M C P+ +++ +C +G+
Sbjct: 549 MLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSGM 608
Query: 74 VDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
VD F ++ + G P V+CY +LL ++ A LL++M
Sbjct: 609 VDAGLRLFYDMLARGDTHPDVICYNVLLDGLLRAKDLPRAMDLLNQM 655
>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
Length = 347
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 11/200 (5%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L + G N+ S+N V++ R+E+A K EM C PN T ++S C
Sbjct: 39 LENLPSYGGEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCR 98
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRIS 125
GLV+ + E ++I G P+ + Y LL + K + D A ++ M + + +S
Sbjct: 99 RGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVS 158
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+T GE D + + +L +G + YN +++ L G + A
Sbjct: 159 YNTLLTALCRNGEVDVAID------LLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALE 212
Query: 186 VLDEATKRGLFPELFRHNKL 205
+LDE +GL P++ + +
Sbjct: 213 LLDEMISKGLQPDIITYTTI 232
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 3/168 (1%)
Query: 43 IKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102
+K EM C P+ T VL+ C G VD++ E + + S G P+ + Y ++L
Sbjct: 1 MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKG 60
Query: 103 YAKSNRWDDAYGLLDEM-HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
+ RW+DA L++EM H N+ VT M+ + V +++ G
Sbjct: 61 LFTAERWEDAEKLMEEMAHKGCPPNV--VTFNMLISFLCRRGLVEPAMEVLEQIPKYGCT 118
Query: 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
YN LL A ++A ++ RG +P++ +N L+ ++
Sbjct: 119 PNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTAL 166
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L ++ G + S+N VI+ + G+ +EA++ EM P+ T + S C
Sbjct: 178 LLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLC 237
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++E+ F +++ GI P+V+ Y +L K +A L M +N
Sbjct: 238 REDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISN 290
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/202 (19%), Positives = 79/202 (39%), Gaps = 1/202 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A + M G + S+N ++ A + G + AI +++ C P + V+
Sbjct: 142 AFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGL 201
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG E+ E E+ S G+ P ++ Y + + + ++ ++A ++ I
Sbjct: 202 TKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTV 261
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ ++ G ++ +F + G Y L+E L GL + A +L
Sbjct: 262 VLYNAILLGLCKRRETHNAID-LFSYMISNGCMPNESTYTILVEGLAYEGLVKEARDLLG 320
Query: 189 EATKRGLFPELFRHNKLVWSVD 210
+ RG+ + F V +D
Sbjct: 321 QLCSRGVVNKKFMKKGAVKMLD 342
>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
Length = 969
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 101/204 (49%), Gaps = 17/204 (8%)
Query: 6 ECQA---ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
ECQ +LS M + G N ++ ++I+ + G+ + +++ + +M C PN T
Sbjct: 731 ECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYR 790
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ C AGL+DE+ E+K + V YC ++ ++K ++ + GLL+E+ ++
Sbjct: 791 VLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSK--KFIASLGLLEELESH 848
Query: 123 RISNIHQVTGQMIKG-------EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
+ +I V G +I E E + +M+E V LN Y +L++AL
Sbjct: 849 GMVSIAPVYGLLIDSFSKAGRLEKALELHKEMME-VSSSLNITSKDT----YTSLIQALC 903
Query: 176 CLGLRERAARVLDEATKRGLFPEL 199
E+A + E T++G+ PEL
Sbjct: 904 LASQLEKAFELYSEITRKGVVPEL 927
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 15/220 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + I+ M G ++ +++ VI + + E+A + EM+ V P+ T
Sbjct: 434 GKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTY 493
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
++ +C GL+++++ F E++S G PSV+ Y LL Y K+ + A + M
Sbjct: 494 TILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVD 553
Query: 120 ---HTNRISNIHQVTGQMIKGEFDD--ESNWQMV--------EYVFDKLNCEGYGLGMRF 166
N I+ V G GE E +M+ ++ F+ + + +
Sbjct: 554 AGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVT 613
Query: 167 YNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
Y AL++ L A +LD + G P ++ L+
Sbjct: 614 YGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALI 653
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 59/110 (53%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS+M ES N ++ A+I+ + G ++A+K MEK C+PN T +++
Sbjct: 703 VLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLG 762
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+G VD S + F ++ + G P+ + Y +L+ + D+A+ LL EM
Sbjct: 763 KSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEM 812
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 17/213 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M GV + ++ +I++F + G E+A + EME V C P+ T A+L Y
Sbjct: 477 LFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYL 536
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLL-------------AVYAKSNRWDDAYG-- 114
V ++ + F + +G P+ + Y L+ VYAK D G
Sbjct: 537 KTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSD 596
Query: 115 -LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
+ HT+ I+ G +I G E + D ++ G Y+AL++
Sbjct: 597 FYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQE-LLDVMSSNGCEPNHIIYDALIDG 655
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G + A V +K G P + + L+
Sbjct: 656 FCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLI 688
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 94/214 (43%), Gaps = 19/214 (8%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM----EKVRCD---------- 55
I RM ++G A N+ +++A+++ + G ++A + Y +M + V D
Sbjct: 547 IFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDS 606
Query: 56 --PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
PN T A++ C A V +++E + S+G P+ + Y L+ + K + D+A
Sbjct: 607 IAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQ 666
Query: 114 GLLDEM-HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
+ M + +H T +I F D + V ++ + Y A+++
Sbjct: 667 EVFFRMSKCGYLPTVHTYT-SLIDAMFKDR-RLDLAIKVLSQMLESSCTPNVVTYTAMID 724
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L +G ++A ++L KRG P + + L+
Sbjct: 725 GLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLI 758
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN---ERTLEAVLS 66
+L + G+ + + +I++F + GR E+A++ + EM +V N + T +++
Sbjct: 841 LLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQ 900
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLLDE 118
C A ++++ E + EI G++P + + L+ K N+W++A Y + DE
Sbjct: 901 ALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDE 956
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + RMS+ G ++ ++I+A + R + AIK +M + C PN T A++
Sbjct: 666 QEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDG 725
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
C G ++ + ++ G P+V+ Y L+ KS + D + L +M T
Sbjct: 726 LCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQ 780
>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
Length = 465
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 10/224 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNER 59
G +C+ +L M+ + N S+N ++E + R+ EA + +M R P+
Sbjct: 24 GRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMV 83
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T +LS YC AG V+ES+E +E+ S G+ P + Y ++A KS R +A LL+EM
Sbjct: 84 TYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEM 143
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+I G E N +M + + K+ G + YN L++ L G
Sbjct: 144 IRAGCCPTLITFNTLISG-CCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGR 202
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWS-------VDVHRMWE 216
+ A ++L+ G P++ ++ V+ +D H++ E
Sbjct: 203 LQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLE 246
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 88/198 (44%), Gaps = 35/198 (17%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L +M+ SGV + ++N +++ + GR +EA + M+ C P+ + +
Sbjct: 173 SLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGL 232
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +G V ++ + ++++ S P+V+ Y +L KS + D A ++++M ++
Sbjct: 233 CKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASS------ 286
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+G GL + Y+ +++ L LG + A V++
Sbjct: 287 -----------------------------DGCGLNVVGYSTVVDGLCKLGRTQEARSVME 317
Query: 189 EATKRGLFPELFRHNKLV 206
+ G P++ ++ LV
Sbjct: 318 AMARAGCRPDVVTYSSLV 335
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 16/185 (8%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74
S G N ++ V++ + GR +EA M + C P+ T ++++ C AG +
Sbjct: 285 SSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKI 344
Query: 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH---------TNRIS 125
+E+ E +E+ G P+ + YC L+ R +A +++EM +S
Sbjct: 345 EEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVS 404
Query: 126 NIHQVTGQMIK-GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + G + K G DD + F ++ +G Y+ ++E L G +A
Sbjct: 405 TYNALIGGLCKAGRIDDALKF------FQRMRSQGCDPDGVSYSTIVEGLARSGRALQAE 458
Query: 185 RVLDE 189
+L E
Sbjct: 459 MILSE 463
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E ++++ M+ +G + ++++++ + G+ EEA++A EM C PN T
Sbjct: 307 GRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGIL-----PSVMCYCMLLAVYAKSNRWDDAYGLL 116
+++ C G + E++ +E+ S G PSV Y L+ K+ R DDA
Sbjct: 367 CSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFF 426
Query: 117 DEMHTN 122
M +
Sbjct: 427 QRMRSQ 432
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-----CDPNERTLEAVLSVY 68
M+ G N+ ++ +++ GR EA + EM C P+ T A++
Sbjct: 354 MAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGL 413
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
C AG +D++ + FQ ++S G P + Y ++ A+S R A +L E+
Sbjct: 414 CKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEVR 465
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 34/161 (21%)
Query: 49 MEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108
M++ C PN T A+++ + G + + + + + I P+V+ Y LL K R
Sbjct: 1 MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60
Query: 109 WDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYN 168
W +A L+ +M IS + T M+ Y+
Sbjct: 61 WHEAEELVRDM----ISRGGRSTPDMVT------------------------------YS 86
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
LL G E + +L E RGL P+ + K+V S+
Sbjct: 87 TLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASL 127
>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
Length = 538
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 100/213 (46%), Gaps = 15/213 (7%)
Query: 1 GGLYKECQ-----AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
GGL K + + M + GV N +++ ++ FRQ G + I+ + E EK R
Sbjct: 201 GGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIR-FFEEEKAR-- 257
Query: 56 PNERTLEAV-----LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110
+LEA L C AG +D +++ +E++ SG++P V+ Y ML+ +A++ ++D
Sbjct: 258 -KGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFD 316
Query: 111 DAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
+ LL++M N + VT + E +Q + + + G + YN++
Sbjct: 317 ASLELLEDMRRNGVKP-DVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSV 375
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
++ L G + RV + K P++ ++
Sbjct: 376 MDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYS 408
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 93/202 (46%), Gaps = 10/202 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M E + N ++ ++ + + + A + + EM++ C PN T ++
Sbjct: 110 VLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLS 169
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
AG +DE+ E +S + V+ ++ K++R DDA ++EM N +
Sbjct: 170 RAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEV 229
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + V G GE D +++ + ++ +G L Y L+AL G +RA
Sbjct: 230 TYSNLVHGFRQHGELD-----RVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRAR 284
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ ++E + G+ P++ ++ L+
Sbjct: 285 KSVEELRQSGVVPDVVTYSMLI 306
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G N ++N+V++ + G+ +E + Y M K RC P+ T +++
Sbjct: 356 LLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLS 415
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
AG++D + + F+ IKSS P Y M++ ++ + ++A G+ M
Sbjct: 416 KAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVT 468
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 57/123 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + +L M +GV + +++ +I + +F++A + ME PN T
Sbjct: 312 AGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVT 371
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+V+ C +G +DE ++ + S P V+ Y +++ +K+ D A L + +
Sbjct: 372 YNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIK 431
Query: 121 TNR 123
++R
Sbjct: 432 SSR 434
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 81/176 (46%), Gaps = 6/176 (3%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E+GV +S +F + + +F E ++ + + E T + V+ C AG+ +
Sbjct: 12 EAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMAN 71
Query: 76 ESKEQFQEIKSSGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQVTGQ 133
++ E +E+ SG+ P++ Y ++ +++R DAY +L++M + + N+ T
Sbjct: 72 QALELVREL--SGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYT-- 127
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ + ++ VF ++ G Y L++ L G + A RV+ E
Sbjct: 128 ILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIE 183
>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
Length = 939
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 97/203 (47%), Gaps = 12/203 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M +GV + + + +A+ + GR +A++ EME + + N AV+ YC
Sbjct: 205 VYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYC 264
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++++ + ++ G+ P+V+ Y +L+ Y K R ++A ++ EM + +
Sbjct: 265 GMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDE 324
Query: 130 VT-GQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
V G MI +G DD + V +++ G + + YN ++ L LG E
Sbjct: 325 VAYGMMINGYCQRGRMDDATR------VRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEV 378
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+VL E G+ P+ + +N L+
Sbjct: 379 QKVLQEMEDVGMRPDKYSYNTLI 401
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G+ N ++N++I + G+ A+ + +++ PN T ++ YC G
Sbjct: 761 MLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGK 820
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
E+ + Q++ GI P+V+ Y +L+ ++A LLD+M N + +
Sbjct: 821 TTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCT 880
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEG 159
+I G + N + + ++D+++ G
Sbjct: 881 LIHG-YIKSGNMEEISKLYDEMHIRG 905
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 7/213 (3%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G+A+N +FN VI + GR EA + M+++RC P+ T + YC G + +
Sbjct: 494 GLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTA 553
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+++ G PSV + + + + +W + EM +S G +I G
Sbjct: 554 THLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAG 613
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ + + F+ +N G + +AL+ + G + A VL + + P
Sbjct: 614 WCKEGNLHEACNLYFEMVN-NGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIP 672
Query: 198 ----ELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
+K+ VD + +G ++A +W
Sbjct: 673 GCSISTIEIDKISHVVDT--IADGNPHSANVMW 703
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 56/111 (50%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +++ G++ N ++N +I+ + + G+ EA K +M + P T ++ C
Sbjct: 792 LFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLC 851
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
G ++E+ + ++ + + P+ + YC L+ Y KS ++ L DEMH
Sbjct: 852 TQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMH 902
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 3/188 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + GVA N S + +++ + G+ E+A+ + E N T V++ C G
Sbjct: 455 MLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGR 514
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E++E +K P + Y L Y K + A L+++M + ++
Sbjct: 515 MAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNS 574
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL-GLRERAARVLDEATK 192
I G F + W V + +++ G + Y AL+ A WC G A + E
Sbjct: 575 FITGHFIAK-QWHKVNDIHSEMSARGLSPNLVTYGALI-AGWCKEGNLHEACNLYFEMVN 632
Query: 193 RGLFPELF 200
G+ P +F
Sbjct: 633 NGMNPNVF 640
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 88/205 (42%), Gaps = 6/205 (2%)
Query: 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
N +I + GR +A + + R P+ T +++ +G +DE+ + S
Sbjct: 704 NVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLS 763
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
+G+ P+++ Y L+ KS + A L +++ + IS + +T + E+ E
Sbjct: 764 AGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISP-NGITYNTLIDEYCKEGKTT 822
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ K+ EG + Y+ L+ L G E A ++LD+ + + P N +
Sbjct: 823 EAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDP-----NYIT 877
Query: 207 WSVDVHRMWEGGAYTAISVWLNKMY 231
+ +H + G IS ++M+
Sbjct: 878 YCTLIHGYIKSGNMEEISKLYDEMH 902
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 82/204 (40%), Gaps = 1/204 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + M ++G+ N +N +I + GR EE K EME V P++ +
Sbjct: 338 GRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSY 397
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC G + ++ E + + +G+ + + Y LL + + DDA L M
Sbjct: 398 NTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLK 457
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ ++ G F Q + + L G + +N ++ L +G
Sbjct: 458 RGVAPNEISCSTLLDGLFKAGKTEQALNLWKETL-ARGLAKNVITFNTVINGLCKIGRMA 516
Query: 182 RAARVLDEATKRGLFPELFRHNKL 205
A +LD + P+ + L
Sbjct: 517 EAEELLDRMKELRCPPDSLTYRTL 540
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 89/232 (38%), Gaps = 45/232 (19%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I S MS G++ N ++ A+I + + G EA Y EM +PN A++S +
Sbjct: 591 IHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFY 650
Query: 70 FAGLVDESKEQFQEIKSSGILP---------------------------SVMCYCMLLAV 102
G VDE+ Q++ + ++P +VM ++ +
Sbjct: 651 KEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGL 710
Query: 103 YAKSNRWDDAYGLLDEMHTNRI--------SNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
KS R DA L + + R S IH G G D+ + + D
Sbjct: 711 -CKSGRIADAKSLFESLRNKRFLPDNFTYSSLIH---GCAASGSIDEAFSLR------DV 760
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ G + YN+L+ L G RA + ++ +G+ P +N L+
Sbjct: 761 MLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLI 812
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 83/193 (43%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G+A + ++N +++ F ++A++ + M K PNE + +L AG
Sbjct: 420 MVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGK 479
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+++ ++E + G+ +V+ + ++ K R +A LLD M R +T +
Sbjct: 480 TEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPP-DSLTYR 538
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ + ++ +K+ G+ + +N+ + + + + E + R
Sbjct: 539 TLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSAR 598
Query: 194 GLFPELFRHNKLV 206
GL P L + L+
Sbjct: 599 GLSPNLVTYGALI 611
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 40/184 (21%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SF+ ++ A G+ A+ + M KV C P+ R+ +L+ +G + + ++
Sbjct: 150 SFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQM 209
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ +G+LP ++ Y + R A ++EM
Sbjct: 210 RIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEM------------------------- 244
Query: 145 WQMVEYVFDKLNCEGYGLGMRF--YNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
EG GL + Y+A+++ +G E A R+L+ ++GL P + +
Sbjct: 245 -------------EGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTY 291
Query: 203 NKLV 206
LV
Sbjct: 292 TLLV 295
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 42/225 (18%), Positives = 92/225 (40%), Gaps = 25/225 (11%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++++M G A + + FN+ I ++ + + EM PN T A+++ +C
Sbjct: 556 LMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWC 615
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---------- 119
G + E+ + E+ ++G+ P+V L++ + K + D+A +L ++
Sbjct: 616 KEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCS 675
Query: 120 -HTNRISNIHQVTGQMIKGEFDDES-NWQMVEY-------------VFDKLNCEGYGLGM 164
T I I V + G + W ++ + +F+ L + +
Sbjct: 676 ISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDN 735
Query: 165 RFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
Y++L+ G + A + D GL P + +N L++ +
Sbjct: 736 FTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGL 780
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 15/180 (8%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+++++I G +EA M PN T +++ C +G + + F ++
Sbjct: 737 TYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKL 796
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGEF 139
+S GI P+ + Y L+ Y K + +A+ L +M I+ + G +G
Sbjct: 797 QSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYM 856
Query: 140 DDESNW--QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
++ QM+E D Y L+ G E +++ DE RGL P
Sbjct: 857 EEAIKLLDQMIENNVDP--------NYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLP 908
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +M E G+ +++ +I G EEAIK +M + DPN T
Sbjct: 819 GKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITY 878
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPS 92
++ Y +G ++E + + E+ G+LP+
Sbjct: 879 CTLIHGYIKSGNMEEISKLYDEMHIRGLLPT 909
>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
Length = 941
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ + + G+ + +N +I+AF G + AI EM+K RC P RT ++ +
Sbjct: 525 AVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGF 584
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG + + E F ++ SG +P+V + L+ + + + A +LDEM +S
Sbjct: 585 ARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDE 644
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G + EY F K+ EG L + Y ALL+A G + A V
Sbjct: 645 HTYTTIMHGYAALGDTGKAFEY-FTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTR 703
Query: 189 EATKRGLFPELFRHNKLV 206
E + + F +N L+
Sbjct: 704 EMNAQKIPRNTFVYNILI 721
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M SG +FNA++ + + E+A++ EM P+E T ++ Y
Sbjct: 596 IFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYA 655
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ E F ++++ G+ V Y LL KS R A + EM+ +I
Sbjct: 656 ALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTF 715
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I G W+ + + ++N EG + Y + + A G RA + ++E
Sbjct: 716 VYNILIDGWARRGDIWEAAD-LMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEE 774
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P + + L+
Sbjct: 775 MEAAGVKPNVKTYTTLI 791
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M++ GV + ++ + I A + G A K EME PN +T ++
Sbjct: 732 EAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLI 791
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ A L +++ F+E+K +G+ P Y C++ ++ +++
Sbjct: 792 HGWANASLPEKALSCFEELKLAGLKPDKAVYHCLMTSLLSRAT 834
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 39/210 (18%), Positives = 89/210 (42%), Gaps = 1/210 (0%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
+A++ M E G+ D ++ +++ + E+ + + +++ P+ T +++
Sbjct: 418 AEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLIN 477
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+Y G V ++ E + +KS GI ++ Y ML+ + K W +A+ + +++ + +
Sbjct: 478 MYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKP 537
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ +IK F N ++ ++ E R + ++ G RA +
Sbjct: 538 DVVLYNNIIKA-FCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEI 596
Query: 187 LDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
D + G P + N LV + R E
Sbjct: 597 FDMMRRSGCIPTVHTFNALVLGLVEKRKME 626
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 11/200 (5%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L + G N+ S+N V++ R+E+A + EM + C PN T ++S C
Sbjct: 251 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 310
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRIS 125
GLV+ + E ++I G P+ + Y LL + K + D A LD M + + +S
Sbjct: 311 KGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVS 370
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+T GE D + + +L +G + YN +++ L G + A
Sbjct: 371 YNTLLTALCRSGEVD------VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 424
Query: 186 VLDEATKRGLFPELFRHNKL 205
+L+E +GL P++ ++ +
Sbjct: 425 LLNEMVSKGLQPDIITYSTI 444
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 13/207 (6%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L M + ++ ++EA + +++A+K EM C P+ T V++
Sbjct: 179 AVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGI 238
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G VD++ E + + S G P+ + Y ++L + RW+DA L+ EM + +
Sbjct: 239 CQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMG-QKGCPPN 297
Query: 129 QVTGQMI------KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
VT M+ KG E +++E + K C L YN LL A ++
Sbjct: 298 VVTFNMLISFLCRKGLV--EPALEVLEQI-PKYGCTPNSLS---YNPLLHAFCKQKKMDK 351
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSV 209
A LD RG +P++ +N L+ ++
Sbjct: 352 AMAFLDLMVSRGCYPDIVSYNTLLTAL 378
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 3/174 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERT 60
GL + +L ++ + G NS S+N ++ AF + + ++A+ A++++ R C P+ +
Sbjct: 312 GLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAM-AFLDLMVSRGCYPDIVS 370
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L+ C +G VD + E ++K G P ++ Y ++ K+ + +A LL+EM
Sbjct: 371 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 430
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ + +T I E + F K+ G YNA++ L
Sbjct: 431 SKGLQP-DIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGL 483
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 94/247 (38%), Gaps = 48/247 (19%)
Query: 7 CQAILSRMSESG---------VARNSD--SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
C A++ ++S SG A D ++NA++ + G+ + A + EM +
Sbjct: 99 CAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAARRLVAEMP---VE 155
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
P+ T ++ C G + E+ +P V+ Y +LL K + + A L
Sbjct: 156 PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKL 215
Query: 116 LDEMH----TNRISNIHQVTGQMIK-GEFDD-------------ESN------------- 144
LDEM T I + V + + G DD E N
Sbjct: 216 LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT 275
Query: 145 ---WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
W+ E + ++ +G + +N L+ L GL E A VL++ K G P
Sbjct: 276 AERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLS 335
Query: 202 HNKLVWS 208
+N L+ +
Sbjct: 336 YNPLLHA 342
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 1/188 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A L M G + S+N ++ A + G + A++ +++ C P + V+
Sbjct: 354 AFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGL 413
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG E+ E E+ S G+ P ++ Y + A + +R +DA ++ I
Sbjct: 414 TKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNT 473
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ +I G ++ +F + G Y L+E L GL + A +LD
Sbjct: 474 VLYNAIILGLCKRRETHSAID-LFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLD 532
Query: 189 EATKRGLF 196
E RG+
Sbjct: 533 ELCSRGVV 540
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE +L+ M G+ + +++ + + R E+AI+A+ +++ + PN
Sbjct: 416 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVL 475
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ C + + F + +G +P+ Y +L+ A +A LLDE+
Sbjct: 476 YNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 534
>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
Length = 538
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 100/213 (46%), Gaps = 15/213 (7%)
Query: 1 GGLYKECQ-----AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
GGL K + + M + GV N +++ ++ FRQ G + I+ + E EK R
Sbjct: 201 GGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIR-FFEEEKAR-- 257
Query: 56 PNERTLEAV-----LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110
+LEA L C AG +D +++ +E++ SG++P V+ Y ML+ +A++ ++D
Sbjct: 258 -KGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFD 316
Query: 111 DAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
+ LL++M N + VT + E +Q + + + G + YN++
Sbjct: 317 ASLELLEDMRRNGVKP-DVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSV 375
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
++ L G + RV + K P++ ++
Sbjct: 376 MDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYS 408
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 93/202 (46%), Gaps = 10/202 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M E + N ++ ++ + + + A + + EM++ C PN T ++
Sbjct: 110 VLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLS 169
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
AG +DE+ E +S + V+ ++ K++R DDA ++EM N +
Sbjct: 170 RAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEV 229
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + V G GE D +++ + ++ +G L Y L+AL G +RA
Sbjct: 230 TYSNLVHGFRQHGELD-----RVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRAR 284
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ ++E + G+ P++ ++ L+
Sbjct: 285 KSVEELRQSGVVPDVVTYSMLI 306
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G N ++N+V++ + G+ +E + Y M K RC P+ T +++
Sbjct: 356 LLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLS 415
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
AG++D + + F+ IKSS P Y M++ ++ + ++A G+ M
Sbjct: 416 KAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVT 468
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 57/123 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + +L M +GV + +++ +I + +F++A + ME PN T
Sbjct: 312 AGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVT 371
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+V+ C +G +DE ++ + S P V+ Y +++ +K+ D A L + +
Sbjct: 372 YNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIK 431
Query: 121 TNR 123
++R
Sbjct: 432 SSR 434
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 6/176 (3%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E+G +S +F + + +F E ++ + + E T + V+ C AG+ +
Sbjct: 12 EAGAKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMAN 71
Query: 76 ESKEQFQEIKSSGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQVTGQ 133
++ E +E+ SG+ P+V Y ++ +++R DAY +L++M + + N+ T
Sbjct: 72 QALELVREL--SGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYT-- 127
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ + ++ VF ++ G Y L++ L G + A RV+ E
Sbjct: 128 ILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIE 183
>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 829
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 103/252 (40%), Gaps = 36/252 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + L+ + +G + ++N++++ F + G + EA+ EME C P+ T
Sbjct: 300 GMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTY 359
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+ + Y AG +DE + S G++P+ + Y ++ Y K+ R DDA L M
Sbjct: 360 NELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKD 419
Query: 120 ------------------HTNRISNIHQVTGQM-IKGEFDDESNWQMV----------EY 150
+R ++ +V +M + G + + W + Y
Sbjct: 420 LGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNY 479
Query: 151 VFDKL----NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V L NC G+ +N L+ A G +A++ E K G P + +N L+
Sbjct: 480 VNKVLREMKNC-GFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALL 538
Query: 207 WSVDVHRMWEGG 218
++ W+
Sbjct: 539 NALARRGDWKAA 550
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 93/210 (44%), Gaps = 10/210 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR-FEEAIKAYVEMEKVRCDPNERT 60
G YK + +M E G+ ++N +++ + + GR ++ ++ EM + +E T
Sbjct: 229 GKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFT 288
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+S G++DE+++ E+K +G P + Y +L V+ K+ + +A +L EM
Sbjct: 289 CSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEME 348
Query: 121 TNRIS----NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N +++ ++ F DE V D + +G Y +++A
Sbjct: 349 DNNCPPDSVTYNELAATYVRAGFLDEG-----MAVIDTMTSKGVMPNAITYTTVIDAYGK 403
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A R+ G P ++ +N ++
Sbjct: 404 AGREDDALRLFSLMKDLGCAPNVYTYNSVL 433
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 89/235 (37%), Gaps = 11/235 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ S M + G A N ++N+V+ + R E+ IK EM+ C PN T +L+V
Sbjct: 413 LFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCS 472
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + + +E+K+ G P + L++ YA+ D+ + EM + +
Sbjct: 473 EEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVT 532
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ +W+ E V + +G+ Y+ LL G + +V E
Sbjct: 533 TYNALLNA-LARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKE 591
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGG----------AYTAISVWLNKMYEMF 234
+FP LV + R G Y V +N M MF
Sbjct: 592 IYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMF 646
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 38/233 (16%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G A N ++N ++ + G+ K EM+ +P++ T ++S Y
Sbjct: 448 VLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYA 507
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN------- 122
G +S + + E+ SG P V Y LL A+ W A ++ +M T
Sbjct: 508 RCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNEN 567
Query: 123 -------------RISNIHQVTGQMIKGEFDDESNWQMV----------------EYVFD 153
+ I +V ++ G +W ++ E FD
Sbjct: 568 SYSLLLHCYSKAGNVKGIEKVEKEIYDGHV--FPSWILLRTLVLTNHKCRHLRGMERAFD 625
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+L GY + N++L + +A +L + GL P LF +N L+
Sbjct: 626 QLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLM 678
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L + SG + S+N VI+ F + G +EAI EM P T L
Sbjct: 689 KAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFL 748
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S Y L DE+ E + + PS + Y +L+ Y K+ ++++A + ++ IS
Sbjct: 749 SGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKYEEAMDFVSKIKELDIS 808
Query: 126 NIHQVTGQMIKGEFDDES 143
FDD+S
Sbjct: 809 -------------FDDQS 813
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG---RFEEAIKAYVEMEKVRCDPNER 59
++ + + +L + E G+ N ++N +++ + + G + EE +K ++ +P+
Sbjct: 651 MFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKG---IQNSGPEPDVV 707
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+ V+ +C GL+ E+ E+ + GI P+++ Y L+ YA +D+A
Sbjct: 708 SYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEA 760
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E +LS M+ G+ ++N + + F+EA + M + C P+E T
Sbjct: 720 GLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTY 779
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGI 89
+ ++ YC AG +E+ + +IK I
Sbjct: 780 KILVDGYCKAGKYEEAMDFVSKIKELDI 807
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
N+++ F + F +A + + + PN T ++ +Y G +++E + I+
Sbjct: 639 INSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQ 698
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG----EFDD 141
+SG P V+ Y ++ + + +A G+L EM T I + G E D
Sbjct: 699 NSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFD 758
Query: 142 ESNWQMVEYVFDKLNC 157
E+N +++ ++ + NC
Sbjct: 759 EAN-EVIRFMIEH-NC 772
>gi|115465970|ref|NP_001056584.1| Os06g0111300 [Oryza sativa Japonica Group]
gi|113594624|dbj|BAF18498.1| Os06g0111300 [Oryza sativa Japonica Group]
Length = 978
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 97/199 (48%), Gaps = 11/199 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M E+ VA N ++ VI ++ + G EEA+ A+ EM++ R P E T ++S+ G
Sbjct: 265 QMLEANVAPNQFTYTVVIGSYAKEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHG 324
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+E+ + E+K I+PS +L +Y K+ + A L EM N+I + G
Sbjct: 325 KGEEALGLYDEMKVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYG 384
Query: 133 QMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+++ G ++D + +F++++ G + Y A+ + + +RA +VL
Sbjct: 385 ILVRIYGKLGLYED------AQRMFEEIDKAGLLSDEQTYVAMAQVHMNVQNYDRALQVL 438
Query: 188 DEATKRGLFPELFRHNKLV 206
D R + P F ++ L+
Sbjct: 439 DAMRARNVKPSQFSYSALL 457
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY +I RM SG+ R+ +FN +I + QGG+ E+A++ + +++ +E+T
Sbjct: 695 GKLYSAV-SIYDRMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKT 753
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+LS Y AG E+ F +K GI P + + ++ YA S ++A + EM
Sbjct: 754 YTNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQ 813
Query: 121 TN 122
N
Sbjct: 814 KN 815
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 1/173 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
FN ++ + ++ + I + +M + PN+ T V+ Y G+++E+ + F E+K
Sbjct: 243 FNFMVSSLQKQKLHGKVIHLWEQMLEANVAPNQFTYTVVIGSYAKEGMLEEAMDAFGEMK 302
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+P Y +L+++ AK + ++A GL DEM I + ++ + +E ++
Sbjct: 303 RRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKVKSIVPSNYTCASVLTLYYKNE-DY 361
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+F ++ Y L+ LGL E A R+ +E K GL +
Sbjct: 362 SKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEIDKAGLLSD 414
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + E + SRM E G+ SFN +I A+ G EA + EM+K P+ T
Sbjct: 764 AGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHT 823
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ Y +++E Q + S + PS + L++ + K + D+A + ++M
Sbjct: 824 YLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMYNQM 882
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY E M + ++ + +V+ + + + +A+ + EME+ + P+E
Sbjct: 331 GLYDE-------MKVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIY 383
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +Y GL ++++ F+EI +G+L Y + V+ +D A +LD M
Sbjct: 384 GILVRIYGKLGLYEDAQRMFEEIDKAGLLSDEQTYVAMAQVHMNVQNYDRALQVLDAMRA 443
Query: 122 NRI 124
+
Sbjct: 444 RNV 446
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 54/111 (48%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL+ E + I M ++ +S ++ A+I A+ +G + +A +A M + P+
Sbjct: 799 SGLHNEAEIIFQEMQKNNHVPDSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTH 858
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111
++S + G +DE++ + +++ +GI + C ++ ++ DD
Sbjct: 859 FNHLISAFLKEGQIDEAQRMYNQMEEAGIPADLACCRTMMRMHLDHGYVDD 909
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 1/170 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ +E M +++ +I + G+ EEA+ Y EM+ P+ T
Sbjct: 289 GMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKVKSIVPSNYTC 348
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+VL++Y ++ F E++ + I+P + Y +L+ +Y K ++DA + +E+
Sbjct: 349 ASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEIDK 408
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
+ + Q M + + + N+ V D + Y+ALL
Sbjct: 409 AGLLSDEQTYVAMAQVHMNVQ-NYDRALQVLDAMRARNVKPSQFSYSALL 457
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/173 (17%), Positives = 74/173 (42%), Gaps = 1/173 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+NA+++A + G+ EEA + ++E+ + + T+ +++ G + + + +
Sbjct: 649 YNAMVDALCRCGKTEEAYRLFMELIDQGHNGDAVTISILVTHLTKQGKLYSAVSIYDRMI 708
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
SSGI S+ + ++++VY + + + A + + I + T + +
Sbjct: 709 SSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLP-IDEKTYTNMLSFYGKAGKH 767
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+F ++ +G G +N ++ A GL A + E K P+
Sbjct: 768 HEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPD 820
>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 920
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 97/203 (47%), Gaps = 12/203 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M +GV + + + +A+ + GR +A++ EME + + N AV+ YC
Sbjct: 205 VYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYC 264
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++++ + ++ G+ P+V+ Y +L+ Y K R ++A ++ EM + +
Sbjct: 265 GMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDE 324
Query: 130 VT-GQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
V G MI +G DD + V +++ G + + YN ++ L LG E
Sbjct: 325 VAYGMMINGYCQRGRMDDATR------VRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEV 378
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+VL E G+ P+ + +N L+
Sbjct: 379 QKVLQEMEDVGMRPDKYSYNTLI 401
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 7/213 (3%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G+A+N +FN VI + GR EA + M+++RC P+ T + YC G + +
Sbjct: 494 GLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTA 553
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+++ G PSV + + + + +W + EM +S G +I G
Sbjct: 554 THLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAG 613
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ + + F+ +N G + +AL+ + G + A VL + + P
Sbjct: 614 WCKEGNLHEACNLYFEMVN-NGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIP 672
Query: 198 ----ELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
+K+ VD + +G ++A +W
Sbjct: 673 GCSISTIEIDKISHVVDT--IADGNPHSANVMW 703
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 3/188 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + GVA N S + +++ + G+ E+A+ + E N T V++ C G
Sbjct: 455 MLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGR 514
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E++E +K P + Y L Y K + A L+++M + ++
Sbjct: 515 MAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNS 574
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL-GLRERAARVLDEATK 192
I G F + W V + +++ G + Y AL+ A WC G A + E
Sbjct: 575 FITGHFIAK-QWHKVNDIHSEMSARGLSPNLVTYGALI-AGWCKEGNLHEACNLYFEMVN 632
Query: 193 RGLFPELF 200
G+ P +F
Sbjct: 633 NGMNPNVF 640
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 82/204 (40%), Gaps = 1/204 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + M ++G+ N +N +I + GR EE K EME V P++ +
Sbjct: 338 GRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSY 397
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC G + ++ E + + +G+ + + Y LL + + DDA L M
Sbjct: 398 NTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLK 457
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ ++ G F Q + + L G + +N ++ L +G
Sbjct: 458 RGVAPNEISCSTLLDGLFKAGKTEQALNLWKETL-ARGLAKNVITFNTVINGLCKIGRMA 516
Query: 182 RAARVLDEATKRGLFPELFRHNKL 205
A +LD + P+ + L
Sbjct: 517 EAEELLDRMKELRCPPDSLTYRTL 540
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 89/232 (38%), Gaps = 45/232 (19%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I S MS G++ N ++ A+I + + G EA Y EM +PN A++S +
Sbjct: 591 IHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFY 650
Query: 70 FAGLVDESKEQFQEIKSSGILP---------------------------SVMCYCMLLAV 102
G VDE+ Q++ + ++P +VM ++ +
Sbjct: 651 KEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGL 710
Query: 103 YAKSNRWDDAYGLLDEMHTNRI--------SNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
KS R DA L + + R S IH G G D+ + + D
Sbjct: 711 -CKSGRIADAKSLFESLRNKRFLPDNFTYSSLIH---GCAASGSIDEAFSLR------DV 760
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ G + YN+L+ L G RA + ++ +G+ P +N L+
Sbjct: 761 MLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLI 812
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 83/193 (43%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G+A + ++N +++ F ++A++ + M K PNE + +L AG
Sbjct: 420 MVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGK 479
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+++ ++E + G+ +V+ + ++ K R +A LLD M R +T +
Sbjct: 480 TEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPP-DSLTYR 538
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ + ++ +K+ G+ + +N+ + + + + E + R
Sbjct: 539 TLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSAR 598
Query: 194 GLFPELFRHNKLV 206
GL P L + L+
Sbjct: 599 GLSPNLVTYGALI 611
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 40/184 (21%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SF+ ++ A G+ A+ + M KV C P+ R+ +L+ +G + + ++
Sbjct: 150 SFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQM 209
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ +G+LP ++ Y + R A ++EM
Sbjct: 210 RIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEM------------------------- 244
Query: 145 WQMVEYVFDKLNCEGYGLGMRF--YNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
EG GL + Y+A+++ +G E A R+L+ ++GL P + +
Sbjct: 245 -------------EGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTY 291
Query: 203 NKLV 206
LV
Sbjct: 292 TLLV 295
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 42/225 (18%), Positives = 92/225 (40%), Gaps = 25/225 (11%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++++M G A + + FN+ I ++ + + EM PN T A+++ +C
Sbjct: 556 LMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWC 615
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---------- 119
G + E+ + E+ ++G+ P+V L++ + K + D+A +L ++
Sbjct: 616 KEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCS 675
Query: 120 -HTNRISNIHQVTGQMIKGEFDDES-NWQMVEY-------------VFDKLNCEGYGLGM 164
T I I V + G + W ++ + +F+ L + +
Sbjct: 676 ISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDN 735
Query: 165 RFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
Y++L+ G + A + D GL P + +N L++ +
Sbjct: 736 FTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGL 780
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+++++I G +EA M PN T +++ C +G + + F ++
Sbjct: 737 TYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKL 796
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAY----------------GLLDEMHTNRISNIH 128
+S GI P+ + Y L+ Y K + +A+ LLD+M N + +
Sbjct: 797 QSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNY 856
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159
+I G + N + + ++D+++ G
Sbjct: 857 ITYCTLIHG-YIKSGNMEEISKLYDEMHIRG 886
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 82/205 (40%), Gaps = 25/205 (12%)
Query: 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
N +I + GR +A + + R P+ T +++ +G +DE+ + S
Sbjct: 704 NVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLS 763
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
+G+ P+++ Y L+ KS + A L +++ + IS + +T + E+ E
Sbjct: 764 AGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISP-NGITYNTLIDEYCKEGKTT 822
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ K+ EGY E A ++LD+ + + P N +
Sbjct: 823 EAFKLKQKMVEEGY-------------------MEEAIKLLDQMIENNVDP-----NYIT 858
Query: 207 WSVDVHRMWEGGAYTAISVWLNKMY 231
+ +H + G IS ++M+
Sbjct: 859 YCTLIHGYIKSGNMEEISKLYDEMH 883
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 10 ILSRMSESGVARNSDSFNAVI----------EAFR------QGGRFEEAIKAYVEMEKVR 53
+ +++ G++ N ++N +I EAF+ + G EEAIK +M +
Sbjct: 792 LFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENN 851
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPS 92
DPN T ++ Y +G ++E + + E+ G+LP+
Sbjct: 852 VDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPT 890
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 112/239 (46%), Gaps = 34/239 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
L + + + M + G+ ++N +++++ + GR ++A++ EM++ C PN+ T
Sbjct: 194 NLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTY 253
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ G ++++K +E+ +SG+ S Y L+ + + + +A+ L++EM
Sbjct: 254 NVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVN 313
Query: 122 NR----ISNIH----------QVTG------QMIKGEF-DDESNWQMVEY---------- 150
R +S + QVTG M+K +F D ++ + Y
Sbjct: 314 RRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISE 373
Query: 151 ---VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+FD+L C + YN L+ L G + A R+ E T +GLFP++F + LV
Sbjct: 374 AFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILV 432
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 13/215 (6%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G + ++N + A Q G FEEA M P+ T ++++ + G
Sbjct: 486 MLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGH 545
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIH 128
+ +++E F E+ S G+ PSV+ Y +L+ +A D A+ +M N I+
Sbjct: 546 LRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNA 605
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ G + D+ + FD++ +G Y L+ +G E A R+
Sbjct: 606 IINGLCMTRRMDEAYKY------FDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYR 659
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAI 223
E R + P+ F H+ V+ ++HR ++ A +
Sbjct: 660 EMLDRKIQPDSFTHS--VFLKNLHRDYQVHAVQCV 692
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 36/203 (17%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
C + +M +G+ + + N ++ R +A Y ME+ P T +L
Sbjct: 164 CLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLD 223
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
YC G VD++ E E++ G P+ + Y +L+ +K + A GL++EM +
Sbjct: 224 SYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNS---- 279
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
LN Y YN L+ GL A +
Sbjct: 280 ---------------------------GLNVSAYT-----YNPLINGFCQKGLFVEAFDL 307
Query: 187 LDEATKRGLFPELFRHNKLVWSV 209
++E R FP L +N L++ +
Sbjct: 308 VEEMVNRRAFPTLSTYNTLMYGL 330
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ + + + M GVA + ++ +I A + A + +M + N T
Sbjct: 543 NGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVIT 602
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+++ C +DE+ + F E++ GILP+ Y +L+ W++A L EM
Sbjct: 603 YNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREML 662
Query: 121 TNRI 124
+I
Sbjct: 663 DRKI 666
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 7/199 (3%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
S M +S + SFN+++ + + G EA + E++ P T ++ C
Sbjct: 343 FSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCM 402
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G +D + +E+ G+ P + Y +L+ K A G +EM + +
Sbjct: 403 WGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFA 462
Query: 131 TGQMIKGEF---DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
I GE D + M E ++ G+ + YN + AL G E A +L
Sbjct: 463 YNTRIVGEMKIADTSVAFSMQE----EMLAAGFPPDVITYNVFVHALCQQGNFEEACDLL 518
Query: 188 DEATKRGLFPELFRHNKLV 206
+ GL P+ + ++
Sbjct: 519 ENMVSDGLIPDHVTYTSII 537
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
S+M E V N ++NA+I R +EA K + EME+ PN+ + +++ C
Sbjct: 588 FSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCN 647
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
G +E+ ++E+ I P + + L
Sbjct: 648 MGYWEEALRLYREMLDRKIQPDSFTHSVFL 677
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/205 (17%), Positives = 78/205 (38%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + M G+ + ++N I + A EM P+ T
Sbjct: 439 GYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITY 498
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ C G +E+ + + + S G++P + Y ++ + K+ A + +EM +
Sbjct: 499 NVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLS 558
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ VT ++ + + F K+ + + YNA++ L +
Sbjct: 559 KGVAP-SVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMD 617
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + DE ++G+ P F + L+
Sbjct: 618 EAYKYFDEMEEKGILPNKFSYTILI 642
>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 576
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
Query: 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
GR+E + +M C+PN T ++S C G E+ + + +K G+ P CY
Sbjct: 297 GRWEAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCY 356
Query: 97 CMLLAVYAKSNRWDDAYGLLDEMHT----NRISNIHQVTGQMI-KGEFDDESNWQMVEYV 151
L++ + K + D A G +D+M + I N + + G + KG D+ N +
Sbjct: 357 DPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALN------I 410
Query: 152 FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
F KL G YN + ALW G + RA ++ E G+ P+ +N L+ S+
Sbjct: 411 FKKLEEVGCPPNASSYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRITYNSLISSL 468
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 37/205 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y E L +M + G + +I+ R E+A++ +E+ DP+
Sbjct: 91 GKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYG-DPDSFAY 149
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
AV+S +C + D + +K G P V+ Y +L+ + D A ++D++
Sbjct: 150 NAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQL-- 207
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+D N ++ Y L+EA G +
Sbjct: 208 -----------------LEDNCNPTVITYTI-----------------LIEATIIHGSID 233
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+LDE RGL P+++ +N +V
Sbjct: 234 DAMRLLDEMMSRGLQPDMYTYNVIV 258
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E I ++ E G N+ S+N + A G A+ +EM DP+ T
Sbjct: 402 GRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRITY 461
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++S C G+VDE+ +++ + P+V+ Y ++L K++R DA +L M
Sbjct: 462 NSLISSLCRDGMVDEAIGLLVDMERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMVD 521
Query: 122 N 122
N
Sbjct: 522 N 522
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 85/197 (43%), Gaps = 4/197 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ RM G + + ++N +I + G+ + A+K ++ + C+P T ++
Sbjct: 168 VILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATI 227
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +D++ E+ S G+ P + Y +++ K D A+ + ++T
Sbjct: 228 IHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDRAFEFVSNLNTTP----SL 283
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ +E W+ E + + +G + Y+ L+ +L G A VL
Sbjct: 284 NLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRV 343
Query: 190 ATKRGLFPELFRHNKLV 206
++GL P+ + ++ L+
Sbjct: 344 MKEKGLNPDAYCYDPLI 360
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N ++ + + GR +EA+ + ++E+V C PN + + +G + E+
Sbjct: 390 NYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSGDKIRALTMILEM 449
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
S+G+ P + Y L++ + D+A GLL +M
Sbjct: 450 LSNGVDPDRITYNSLISSLCRDGMVDEAIGLLVDM 484
>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
Length = 457
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 3/210 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNER 59
G +C+ +L M+ G+ N S+N ++E + R+ EA + +M R P+
Sbjct: 24 GRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDLV 83
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T +LS YC AG V+ES+E +E+ S G+ P + Y ++A KS R +A LL+EM
Sbjct: 84 TYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEM 143
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+I G E N +M + + + G + YN L++ L G
Sbjct: 144 IRAGCCPTLITFNTLISG-CCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGR 202
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ A ++L+ G P++ ++ V+ +
Sbjct: 203 LQEAEQLLERMKASGCAPDVVAYSSFVYGL 232
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 86/198 (43%), Gaps = 35/198 (17%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L M+ SGV + ++N +++ + GR +EA + M+ C P+ + +
Sbjct: 173 SLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGL 232
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +G V + + ++++ S P+V+ Y +L KS + D A ++++M ++
Sbjct: 233 CKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASS------ 286
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+G GL + Y+ +++ L LG + A V++
Sbjct: 287 -----------------------------DGCGLNVVGYSTVVDGLCKLGRTQEARSVME 317
Query: 189 EATKRGLFPELFRHNKLV 206
+ G P++ ++ LV
Sbjct: 318 AMARAGCRPDVVTYSSLV 335
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E ++++ M+ +G + ++++++ + G+ EEA++A EM C PN T
Sbjct: 307 GRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGIL-----PSVMCYCMLLAVYAKSNRWDDAYGLL 116
+++ C G + E++ +E+ S G PSV Y L+ K+ R DDA
Sbjct: 367 CSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFF 426
Query: 117 DEMHT 121
M +
Sbjct: 427 QRMRS 431
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74
S G N ++ V++ + GR +EA M + C P+ T ++++ C AG +
Sbjct: 285 SSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKI 344
Query: 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH---------TNRIS 125
+E+ E +E+ G P+ + YC L+ R +A +++EM +S
Sbjct: 345 EEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVS 404
Query: 126 NIHQVTGQMIK-GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ + G + K G DD + F ++ +G Y+ ++E L
Sbjct: 405 TYNALIGGLCKAGRIDDALKF------FQRMRSQGCDPDGVSYSTIVEGL 448
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-----RCDPNERTLEAVLSVY 68
M+ G N+ ++ +++ GR EA + EM C P+ T A++
Sbjct: 354 MAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGL 413
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108
C AG +D++ + FQ ++S G P + Y ++ A+S R
Sbjct: 414 CKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGR 453
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 34/161 (21%)
Query: 49 MEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108
M++ C PN T A+++ + G + + + + + GI P+V+ Y LL K R
Sbjct: 1 MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60
Query: 109 WDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYN 168
W +A L+ +M IS + T ++ Y+
Sbjct: 61 WHEAEELVRDM----ISRGGRSTPDLVT------------------------------YS 86
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
LL G E + +L E RGL P+ + K++ S+
Sbjct: 87 TLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASL 127
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 113/276 (40%), Gaps = 30/276 (10%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+++ + M G N ++ +++ +R +A M++ +P T+
Sbjct: 1007 LWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMH 1066
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ Y +G DE+++ +KSS + S + Y +L Y ++ + L EM +
Sbjct: 1067 ILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMKRD 1126
Query: 123 RISNIHQVTGQMIKG-----EFDD------------------------ESNWQMVEYVFD 153
+ HQV I+ + DD S + V+ +
Sbjct: 1127 GVEPDHQVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPIRLLTERTSSLFTEVDSFLE 1186
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVH 212
KL + F NAL + LW R A+ + A KR ++ +FR + W D+
Sbjct: 1187 KLGTLEDSASLNFVNALEDLLWAFERRATASWIFQLAVKRSIYHHNIFRVEEKDWGADLR 1246
Query: 213 RMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
++ G A A+++WL++M + + G + V+V
Sbjct: 1247 KLSAGAALVALTLWLDQMQDASLQGAPESPKSIVLV 1282
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 29/211 (13%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + ++G+ ++ ++N +I A QG ++A+ + EM C P+ T A++SV+
Sbjct: 280 LLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHG 339
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E++ F+E+ G P + Y LL +AK + + +
Sbjct: 340 RCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKE---------------GDVERVER 384
Query: 130 VTGQMIKGEF-DDESNWQMVEYVFDKLNCEGYGLG----MR---------FYNALLEALW 175
V +++K F D + + +++ K+ LG MR Y L+++L
Sbjct: 385 VCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLG 444
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ A +VL+E GL P L + L+
Sbjct: 445 KMDRISEAGKVLEEMADAGLKPTLVTFSALI 475
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + + ++G ++ ++N +I + + GR + A+ Y EM + C P+ T
Sbjct: 377 GDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTY 436
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ + E+ + +E+ +G+ P+++ + L+ YAKS R DDA D M
Sbjct: 437 TVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRM 494
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 28/199 (14%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE--SKEQFQE 83
FNA++ + + GRF++A + M +P+ + +++ +G + + E E
Sbjct: 224 FNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHE 283
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----------NRISNIHQVTGQ 133
++ +G+ P + Y L++ ++ + DDA + +EM N + ++H G+
Sbjct: 284 VRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGK 343
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
Q E +F +L +G+ YN+LL A G ER RV +E K
Sbjct: 344 A-----------QEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKA 392
Query: 194 GLFPELFRHNKLVWSVDVH 212
G FR + + ++ +H
Sbjct: 393 G-----FRKDGITYNTMIH 406
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 3/217 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GLY+ +AI M + G +S N ++ A GR +E E++ + ++ T
Sbjct: 795 SGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKST 854
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +L + AG V E + + +K++G LP++ Y +++++ + R+ D ++ EM
Sbjct: 855 VLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEME 914
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
V ++ + N+ V+ + G YN L+ ++ R
Sbjct: 915 GAGFKPDLVVLNTLLL-MYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLI-VMYSRNFR 972
Query: 181 -ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E +L E KRGL P+L + L+ + ++WE
Sbjct: 973 PEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWE 1009
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 86/203 (42%), Gaps = 1/203 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E I + M +G N + +I RF + EME P+ L +L
Sbjct: 870 EVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLL 929
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+Y G D + E + I +G+ P Y L+ +Y+++ R ++ + LL EM ++
Sbjct: 930 LMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLT 989
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ + +++ W+ + +F+++ +GY L Y+ +++ +A
Sbjct: 990 PKLE-SYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEH 1048
Query: 186 VLDEATKRGLFPELFRHNKLVWS 208
+L + G+ P + + L+ S
Sbjct: 1049 LLSAMKEDGIEPTIATMHILMTS 1071
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY E +AI G ++ ++ ++++ + R EA K EM P T
Sbjct: 419 GLYDEMRAI-------GCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTF 471
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN 107
A++ Y +G D+++ F + SG+ P + Y ++L V+A+S+
Sbjct: 472 SALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSD 517
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/185 (18%), Positives = 82/185 (44%), Gaps = 1/185 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ + +++ M +G + N ++ + G F+ I+ Y + + +P+E T
Sbjct: 903 FRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNT 962
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ +Y +E E+ G+ P + Y +LLA K+ W+ A L +EM T +
Sbjct: 963 LIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRT-K 1021
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+++ M+ + + N E++ + +G + + L+ + G + A
Sbjct: 1022 GYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEA 1081
Query: 184 ARVLD 188
+VL+
Sbjct: 1082 EKVLN 1086
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L M+++G+ +F+A+I A+ + GR ++A + + M + P+ +L
Sbjct: 451 EAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVML 510
Query: 66 SVYCFAGLVDESKEQ---FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ + DE+++ ++ + G P Y +LLA AK N D+ G++ +M
Sbjct: 511 DVFARS---DETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAV 567
Query: 123 RISNIHQVTGQMIKGE 138
N ++ +IK E
Sbjct: 568 FEMNPLVISSILIKAE 583
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 97/206 (47%), Gaps = 2/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + C+ I +M++ V + +N++I + GR EE+ K + +M++ PNE T
Sbjct: 376 GNVSLACE-IFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFT 434
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y G ++ +++ Q + +G+ P+ + Y LL Y KS+ + M
Sbjct: 435 YSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSML 494
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +++ G +I N + V ++ G + Y++L+ L R
Sbjct: 495 DQGVMLDNRIYGILIH-NLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADR 553
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E+A +LDE +K+G+ P + +N L+
Sbjct: 554 EKAFGILDEMSKKGVDPNIVCYNALI 579
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G++ + +++ +IEA+ + F+ A K VEM + C N T +++ C +G
Sbjct: 108 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGA 167
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
V+E+ ++++ G++P Y L+ KS R ++A LLDEM + V
Sbjct: 168 VEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYAN 227
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G F E N + ++ G Y+ L+ L +G +RA+ +L + +
Sbjct: 228 LIDG-FMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRD 286
Query: 194 GLFPELFRHNKLV 206
P+ +N ++
Sbjct: 287 SHRPDTITYNLII 299
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 12/223 (5%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +A+L MS + + N + +I+ F + G +EA K EM PN+ T + ++
Sbjct: 205 EAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLV 264
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G +D + +++ P + Y +++ + + + DA+ LL EM IS
Sbjct: 265 RGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGIS 324
Query: 126 -NIHQ----VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N++ + G GE + S+ + +++ +G Y L+ G
Sbjct: 325 PNVYTYSIMIHGLCQSGEPEKASD------LLEEMTTKGLKPNAFVYAPLISGYCREGNV 378
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVD-VHRMWEGGAYTA 222
A + D+ TK + P+L+ +N L++ + V R+ E Y A
Sbjct: 379 SLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFA 421
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 95/238 (39%), Gaps = 38/238 (15%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K+ +LS M +G++ N +++ +I Q G E+A EM PN +
Sbjct: 309 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 368
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH---- 120
+S YC G V + E F ++ +LP + CY L+ +K R +++ +M
Sbjct: 369 ISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL 428
Query: 121 -TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD------------------------KL 155
N + + G + G+ ES Q+V+ + D K+
Sbjct: 429 LPNEFTYSGLIHGYLKNGDL--ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKV 486
Query: 156 NC-------EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +G L R Y L+ L G E A RVL E K G P++ ++ L+
Sbjct: 487 SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLI 544
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 89/206 (43%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E ++M E G+ N +++ +I + + G E A + M PN+
Sbjct: 411 GRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 470
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y + +++ F+ + G++ Y +L+ + S + A+ +L E+
Sbjct: 471 IDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEK 530
Query: 122 N-RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + ++H V +I G ++ + + D+++ +G + YNAL++ L G
Sbjct: 531 NGSVPDVH-VYSSLISG-LCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDI 588
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A V + +GL P + L+
Sbjct: 589 SYARNVFNSILAKGLVPNCVTYTSLI 614
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 5/195 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G+ + ++ A+I + R EA EM PN ++ + G
Sbjct: 178 MEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGN 237
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--HTNRISNIHQVT 131
DE+ + +E+ ++G+ P+ + Y L+ K + D A LL +M ++R I
Sbjct: 238 ADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTI--TY 295
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+I+G F N + + ++ G + Y+ ++ L G E+A+ +L+E T
Sbjct: 296 NLIIEGHF-RHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMT 354
Query: 192 KRGLFPELFRHNKLV 206
+GL P F + L+
Sbjct: 355 TKGLKPNAFVYAPLI 369
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 77/197 (39%), Gaps = 36/197 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M ++ ++N +IE + ++A + EME PN T ++ C
Sbjct: 279 LLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLC 338
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G +++ + +E+ + G+ P+ Y L++ Y +
Sbjct: 339 QSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR------------------------ 374
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
E N + +FDK+ + YN+L+ L +G E + + +
Sbjct: 375 ------------EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQ 422
Query: 190 ATKRGLFPELFRHNKLV 206
+RGL P F ++ L+
Sbjct: 423 MQERGLLPNEFTYSGLI 439
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
IL MS+ GV N +NA+I+ + G A + + PN T +++
Sbjct: 558 GILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGS 617
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G + + + E+ ++GI P Y +L + + + A L++EM
Sbjct: 618 CKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 668
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 37/192 (19%), Positives = 76/192 (39%), Gaps = 5/192 (2%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ + M + GV ++ + +I G E A + E+EK P+ ++
Sbjct: 484 EKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSL 543
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+S C +++ E+ G+ P+++CY L+ KS A + + + +
Sbjct: 544 ISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGL 603
Query: 125 SNIHQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+I G + D SN Y+++++ G Y+ L G E+
Sbjct: 604 VPNCVTYTSLIDGSCKVGDISN---AFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQ 660
Query: 183 AARVLDEATKRG 194
A +++E RG
Sbjct: 661 AMFLIEEMFLRG 672
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L +M E G+ + S+N +I + G+ EEA K EM + P+ T
Sbjct: 515 GNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTY 574
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G +D+ E K G +P+V Y +LL Y K++R +DA +
Sbjct: 575 NFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDY 634
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ + V ++ + N + D + G Y++L+ + C+G +
Sbjct: 635 EKVE-LSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVD 693
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + +E GL P +F + L+
Sbjct: 694 EAKEIFEEMRNEGLLPNVFCYTALI 718
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 96/209 (45%), Gaps = 15/209 (7%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
V +S +N +I A+ + G EA K M+ P T +++ C G VDE+K
Sbjct: 637 VELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAK 696
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE 138
E F+E+++ G+LP+V CY L+ + K + D +L EM +N I MI G
Sbjct: 697 EIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDG- 755
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL---DEATKRGL 195
+ N + + +++ G YNAL + +C +ER V D + GL
Sbjct: 756 YCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKG-YC---KERELTVTLQSDHKSNIGL 811
Query: 196 FPELFRHNKLVWSVDVHRMWEGGAYTAIS 224
E ++ ++ +H++ +TAIS
Sbjct: 812 PLE----EEITYNTLIHKLH---PHTAIS 833
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 90/205 (43%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+++E +L M G A N FNA+I+ + + G EA++ EM PN T
Sbjct: 340 MFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFN 399
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+L +C + ++++++ I SSG+ ++ ++ + + + A ++ ++ +
Sbjct: 400 TLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSG 459
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
I + ++ G E + + +E F +G NALL L G E
Sbjct: 460 NIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEE 519
Query: 183 AARVLDEATKRGLFPELFRHNKLVW 207
VL + ++GL + +N L++
Sbjct: 520 VFEVLKQMLEKGLLLDRISYNTLIF 544
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 6/213 (2%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GVA + +F I AF +GGR +A+ + +ME + PN T V+ +G +E+
Sbjct: 250 GVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEA 309
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ S + PSV+ Y +L++ K +++A +L EM++ + V +I G
Sbjct: 310 LRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDG 369
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ + + V D++ +G +N LL+ E+A +VL GL
Sbjct: 370 -YCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGL-- 426
Query: 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
N V S +HR+ E + + + K+
Sbjct: 427 ---SVNMDVCSYVIHRLMERSGFVSALKIVTKL 456
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + +M GV N ++N VI+ + GRFEEA++ M + + +P+ T
Sbjct: 268 GGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVT 327
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++S + +E+ E E+ S G P+ + + L+ Y + +A + DEM
Sbjct: 328 YGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEM 386
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ +++++I GR +EA + + EM PN A++ +C G
Sbjct: 667 MKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQ 726
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+D E+ S+GI P+ + Y +++ Y K +A LL+EM N I+
Sbjct: 727 MDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIA 778
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + I M G+ N + A+I + G+ + +EM PN+ T
Sbjct: 690 GRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITY 749
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
++ YC G + E++E E+ +GI P + Y L Y K
Sbjct: 750 TIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGYCK 793
>gi|55295905|dbj|BAD67773.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 1013
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 97/199 (48%), Gaps = 11/199 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M E+ VA N ++ VI ++ + G EEA+ A+ EM++ R P E T ++S+ G
Sbjct: 265 QMLEANVAPNQFTYTVVIGSYAKEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHG 324
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+E+ + E+K I+PS +L +Y K+ + A L EM N+I + G
Sbjct: 325 KGEEALGLYDEMKVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYG 384
Query: 133 QMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+++ G ++D + +F++++ G + Y A+ + + +RA +VL
Sbjct: 385 ILVRIYGKLGLYED------AQRMFEEIDKAGLLSDEQTYVAMAQVHMNVQNYDRALQVL 438
Query: 188 DEATKRGLFPELFRHNKLV 206
D R + P F ++ L+
Sbjct: 439 DAMRARNVKPSQFSYSALL 457
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY +I RM SG+ R+ +FN +I + QGG+ E+A++ + +++ +E+T
Sbjct: 730 GKLYSAV-SIYDRMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKT 788
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+LS Y AG E+ F +K GI P + + ++ YA S ++A + EM
Sbjct: 789 YTNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQ 848
Query: 121 TN 122
N
Sbjct: 849 KN 850
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 1/173 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
FN ++ + ++ + I + +M + PN+ T V+ Y G+++E+ + F E+K
Sbjct: 243 FNFMVSSLQKQKLHGKVIHLWEQMLEANVAPNQFTYTVVIGSYAKEGMLEEAMDAFGEMK 302
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+P Y +L+++ AK + ++A GL DEM I + ++ + +E ++
Sbjct: 303 RRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKVKSIVPSNYTCASVLTLYYKNE-DY 361
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+F ++ Y L+ LGL E A R+ +E K GL +
Sbjct: 362 SKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEIDKAGLLSD 414
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + E + SRM E G+ SFN +I A+ G EA + EM+K P+ T
Sbjct: 799 AGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHT 858
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ Y +++E Q + S + PS + L++ + K + D+A + ++M
Sbjct: 859 YLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMYNQM 917
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY E M + ++ + +V+ + + + +A+ + EME+ + P+E
Sbjct: 331 GLYDE-------MKVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIY 383
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +Y GL ++++ F+EI +G+L Y + V+ +D A +LD M
Sbjct: 384 GILVRIYGKLGLYEDAQRMFEEIDKAGLLSDEQTYVAMAQVHMNVQNYDRALQVLDAMRA 443
Query: 122 NRI 124
+
Sbjct: 444 RNV 446
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 54/111 (48%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL+ E + I M ++ +S ++ A+I A+ +G + +A +A M + P+
Sbjct: 834 SGLHNEAEIIFQEMQKNNHVPDSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTH 893
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111
++S + G +DE++ + +++ +GI + C ++ ++ DD
Sbjct: 894 FNHLISAFLKEGQIDEAQRMYNQMEEAGIPADLACCRTMMRMHLDHGYVDD 944
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 1/170 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ +E M +++ +I + G+ EEA+ Y EM+ P+ T
Sbjct: 289 GMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKVKSIVPSNYTC 348
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+VL++Y ++ F E++ + I+P + Y +L+ +Y K ++DA + +E+
Sbjct: 349 ASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEIDK 408
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
+ + Q M + + + N+ V D + Y+ALL
Sbjct: 409 AGLLSDEQTYVAMAQVHMNVQ-NYDRALQVLDAMRARNVKPSQFSYSALL 457
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 101/205 (49%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E +++ M G + ++N VI + G++E A + + EM + P+ T
Sbjct: 284 GLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTY 343
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L C G V E+++ F +++S ++P ++C+ +++++ +S D A + +
Sbjct: 344 RSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + +I+G + + + + +++ +G + + YN +L L +
Sbjct: 404 AGLIPDNVIYTILIQG-YCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLG 462
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++ +E T+R LFP+ + L+
Sbjct: 463 EADKLFNEMTERALFPDSYTLTILI 487
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 13/208 (6%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + M+E + +S + +I+ + G + A++ + +M++ R + T +L
Sbjct: 463 EADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLL 522
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ G +D +KE + ++ S ILP+ + Y +L+ +A+ + DEM + I
Sbjct: 523 DGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIK 582
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW-------CLG 178
+ MIKG + N E +K+ EG+ YN L+ G
Sbjct: 583 PTVMICNSMIKG-YCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFG 641
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
L ++ E + GL P++F +N ++
Sbjct: 642 LVKKM-----EEEQGGLVPDVFTYNSIL 664
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 47/236 (19%), Positives = 98/236 (41%), Gaps = 16/236 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+Y+E +S SGV N + N ++ A + G+ E+ ++++ P+ T
Sbjct: 221 GVYQE-------ISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTY 273
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S Y GL++E+ E + G P V Y ++ K +++ A + EM
Sbjct: 274 NTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLR 333
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +S T + + E + + E VF + + +++++ G +
Sbjct: 334 SGLSP-DSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLD 392
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMG 237
+A + + GL P+ +++++ + G ISV +N EM G
Sbjct: 393 KALMYFNSVKEAGLIPD-----NVIYTILIQGYCRKG---MISVAMNLRNEMLQQG 440
>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 3/194 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G N S++ +I+ + G+ E IK M+ V C+P+ ++ C L
Sbjct: 187 MVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRL 246
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
V+E+ F ++K +GILP+V+ Y L+ RW +A+GLL+EM I V
Sbjct: 247 VNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMP-DLVAFS 305
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR-VLDEATK 192
++ E + + G + YN L+ +CL + AR V +
Sbjct: 306 VLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNG-YCLRMEVVEARKVFEVMIS 364
Query: 193 RGLFPELFRHNKLV 206
+G P++F + LV
Sbjct: 365 KGRMPDVFSFSILV 378
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +KE +L+ M + + +F+ +I+ + G EA M ++ +P+ T
Sbjct: 280 GRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATY 339
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
+++ YC V E+++ F+ + S G +P V + +L+ Y K+ R D+A L DEM H
Sbjct: 340 NTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTH 399
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I + +I G + E +F ++ GY + Y+ LL+ L G
Sbjct: 400 RGLIPDTVSYN-TLISGLCQARRPLE-AEELFKDMHSNGYPPNLVTYSILLDCLSKQGYL 457
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
++A + GL P+L +N ++
Sbjct: 458 DQAMGLFRAMENSGLKPDLVTYNIMI 483
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 99/234 (42%), Gaps = 14/234 (5%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
YK ++ +M +G++ + S +I F + + ++ K+ +PN T
Sbjct: 107 YKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFST 166
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-- 121
+++ +C G + + E F + + G P+V Y +++ + + + LL+ M
Sbjct: 167 LINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVG 226
Query: 122 --NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + + ++ K +E+ ++F K+ G + Y +L+ L LG
Sbjct: 227 CEPDVVIYNTIVDRLCKDRLVNEA-----VHIFCKMKGTGILPTVVTYTSLIHGLRNLGR 281
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
+ A +L+E + P+L + +SV + M + G + V L M EM
Sbjct: 282 WKEAFGLLNEMKGGNIMPDL-----VAFSVLIDIMCKEGEVSEARVILKTMTEM 330
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 55/114 (48%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + M+ G+ ++ S+N +I Q R EA + + +M PN T +L
Sbjct: 389 EAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILL 448
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G +D++ F+ +++SG+ P ++ Y +++ K ++ DA L E+
Sbjct: 449 DCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAEL 502
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 44/94 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + M SG+ + ++N +I+ + G+F++A + + E+ PN
Sbjct: 455 GYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVC 514
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMC 95
+ C GL+DE+ + F++++ P+ C
Sbjct: 515 TPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQGC 548
>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
Length = 1283
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 113/276 (40%), Gaps = 30/276 (10%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+++ + M G N ++ +++ +R +A M++ +P T+
Sbjct: 847 LWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMH 906
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ Y +G DE+++ +KSS + S + Y +L Y ++ + L EM +
Sbjct: 907 ILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMKRD 966
Query: 123 RISNIHQVTGQMIKG-----EFDD------------------------ESNWQMVEYVFD 153
+ HQV I+ + DD S + V+ +
Sbjct: 967 GVEPDHQVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPIRLLTERTSSLFTEVDSFLE 1026
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVH 212
KL + F NAL + LW R A+ + A KR ++ +FR + W D+
Sbjct: 1027 KLGTLEDSASLNFVNALEDLLWAFERRATASWIFQLAVKRSIYHHNIFRVEEKDWGADLR 1086
Query: 213 RMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
++ G A A+++WL++M + + G + V+V
Sbjct: 1087 KLSAGAALVALTLWLDQMQDASLQGAPESPKSIVLV 1122
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 29/211 (13%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + ++G+ ++ ++N +I A QG ++A+ + EM C P+ T A++SV+
Sbjct: 120 LLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHG 179
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E++ F+E+ G P + Y LL +AK + + +
Sbjct: 180 RCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKE---------------GDVERVER 224
Query: 130 VTGQMIKGEF-DDESNWQMVEYVFDKLNCEGYGLG----MR---------FYNALLEALW 175
V +++K F D + + +++ K+ LG MR Y L+++L
Sbjct: 225 VCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLG 284
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ A +VL+E GL P L + L+
Sbjct: 285 KMDRISEAGKVLEEMADAGLKPTLVTFSALI 315
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + + ++G ++ ++N +I + + GR + A+ Y EM + C P+ T
Sbjct: 217 GDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTY 276
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ + E+ + +E+ +G+ P+++ + L+ YAKS R DDA D M
Sbjct: 277 TVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRM 334
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 28/199 (14%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE--SKEQFQE 83
FNA++ + + GRF++A + M +P+ + +++ +G + + E E
Sbjct: 64 FNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHE 123
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----------NRISNIHQVTGQ 133
++ +G+ P + Y L++ ++ + DDA + +EM N + ++H G+
Sbjct: 124 VRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGK 183
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
Q E +F +L +G+ YN+LL A G ER RV +E K
Sbjct: 184 A-----------QEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKA 232
Query: 194 GLFPELFRHNKLVWSVDVH 212
G FR + + ++ +H
Sbjct: 233 G-----FRKDGITYNTMIH 246
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 3/217 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GLY+ +AI M + G +S N ++ A GR +E E++ + ++ T
Sbjct: 635 SGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKST 694
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +L + AG V E + + +K++G LP++ Y +++++ + R+ D ++ EM
Sbjct: 695 VLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEME 754
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
V ++ + N+ V+ + G YN L+ ++ R
Sbjct: 755 GAGFKPDLVVLNTLLL-MYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLI-VMYSRNFR 812
Query: 181 -ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E +L E KRGL P+L + L+ + ++WE
Sbjct: 813 PEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWE 849
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 86/203 (42%), Gaps = 1/203 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E I + M +G N + +I RF + EME P+ L +L
Sbjct: 710 EVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLL 769
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+Y G D + E + I +G+ P Y L+ +Y+++ R ++ + LL EM ++
Sbjct: 770 LMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLT 829
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ + +++ W+ + +F+++ +GY L Y+ +++ +A
Sbjct: 830 PKLE-SYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEH 888
Query: 186 VLDEATKRGLFPELFRHNKLVWS 208
+L + G+ P + + L+ S
Sbjct: 889 LLSAMKEDGIEPTIATMHILMTS 911
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY E +AI G ++ ++ ++++ + R EA K EM P T
Sbjct: 259 GLYDEMRAI-------GCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTF 311
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN 107
A++ Y +G D+++ F + SG+ P + Y ++L V+A+S+
Sbjct: 312 SALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSD 357
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 83/192 (43%), Gaps = 1/192 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ + +++ M +G + N ++ + G F+ I+ Y + + +P+E T
Sbjct: 743 FRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNT 802
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ +Y +E E+ G+ P + Y +LLA K+ W+ A L +EM T +
Sbjct: 803 LIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRT-K 861
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+++ M+ + + N E++ + +G + + L+ + G + A
Sbjct: 862 GYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEA 921
Query: 184 ARVLDEATKRGL 195
+VL+ L
Sbjct: 922 EKVLNSLKSSNL 933
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L M+++G+ +F+A+I A+ + GR ++A + + M + P+ +L
Sbjct: 291 EAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVML 350
Query: 66 SVYCFAGLVDESKEQ---FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ + DE+++ ++ + G P Y +LLA AK N D+ G++ +M
Sbjct: 351 DVFARS---DETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAV 407
Query: 123 RISNIHQVTGQMIKGE 138
N ++ +IK E
Sbjct: 408 FEMNPLVISSILIKAE 423
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 14/185 (7%)
Query: 35 QGGRFEEAIKAYVEMEKVR-------CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87
+ G+ +AI+ Y + ++ CD E +++ A L E+ + F +++
Sbjct: 491 KNGKIVDAIQEYSRKQMLKRGSFGQDCD----LYEYLITYLEEAELFPEACQVFCDMQFL 546
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIHQVTGQMIKGEFDDESNWQ 146
GI+PS Y ++ + + AY L+D+ + IS NI MI+ + WQ
Sbjct: 547 GIVPSQKIYQSIIYTCCRLGFPETAYQLMDDAARSDISLNILSCRVAMIEA-YGKLKLWQ 605
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
E L E G+ R +NAL+ A GL E A + D K+G P + N ++
Sbjct: 606 QAENFVKGLKQES-GVDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMM 664
Query: 207 WSVDV 211
++ V
Sbjct: 665 RALIV 669
>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Glycine max]
Length = 576
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 4/200 (2%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
C+ IL R S + +N +IEAF Q ++EA Y+++ + RC P E T ++
Sbjct: 142 CRWILLR---SSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIK 198
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
YC +GL+++++ F E+++ G+ S + Y + K D A + M +
Sbjct: 199 AYCISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKP 258
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ T M+ + M +F ++ + Y AL+ A GL E+A V
Sbjct: 259 TTE-TYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEV 317
Query: 187 LDEATKRGLFPELFRHNKLV 206
++ + GL P+++ +N L+
Sbjct: 318 FEQMQEAGLEPDVYAYNALM 337
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 110/233 (47%), Gaps = 13/233 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + + +M E+G+ + ++NA++EA+ + G A + + M+ + C+P+ +
Sbjct: 309 GLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASY 368
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y AG D+++ F+++K GI P++ + +LL+ Y+K + +L++M
Sbjct: 369 NILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCK 428
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + V M+ + + +E V + Y + YN L+ G E
Sbjct: 429 SGLKLDTYVLNSML-NLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIE 487
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234
R + +GL P++ + W+ + GAY+ ++L K E+F
Sbjct: 488 RMEDLFQLLPSKGLKPDV-----VTWTSRI------GAYSKKKLYL-KCLEIF 528
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 108/238 (45%), Gaps = 23/238 (9%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + I RM + ++++ +I + + G+ A+K + EM C PN T
Sbjct: 238 GGNSDKAEEIFKRMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICT 297
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA---YGLLD 117
A+++ + GL ++++E F++++ +G+ P V Y L+ Y+++ A + L+
Sbjct: 298 YTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQ 357
Query: 118 EM--HTNRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
M +R S NI + K F D++ E VF + G M+ + LL A
Sbjct: 358 HMGCEPDRASYNI--LVDAYGKAGFQDDA-----EAVFKDMKRVGITPTMKSHMVLLSAY 410
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV----------WSVDVHRMWEGGAYTA 222
+G + +L++ K GL + + N ++ +V R+ E G+Y A
Sbjct: 411 SKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVA 468
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 87/201 (43%), Gaps = 1/201 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ +A+ + M G+ ++ +NA I +GG ++A + + M+K C P T
Sbjct: 204 GLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETY 263
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++Y AG + + F E+ S P++ Y L+ +A+ + A + ++M
Sbjct: 264 TMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQE 323
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +++ + E +F + G YN L++A G ++
Sbjct: 324 AGLEPDVYAYNALMEAYSRAGYPYGAAE-IFSLMQHMGCEPDRASYNILVDAYGKAGFQD 382
Query: 182 RAARVLDEATKRGLFPELFRH 202
A V + + G+ P + H
Sbjct: 383 DAEAVFKDMKRVGITPTMKSH 403
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 60/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +C+ IL++M +SG+ ++ N+++ + + G+F + + MEK + T
Sbjct: 414 GSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTY 473
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ Y AG ++ ++ FQ + S G+ P V+ + + Y+K + + +EM
Sbjct: 474 NILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEEM 531
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 112/239 (46%), Gaps = 34/239 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
L + + + M + G+ ++N +++++ + GR ++A++ EM++ C PN+ T
Sbjct: 194 NLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTY 253
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ G ++++K +E+ +SG+ S Y L+ + + + +A+ L++EM
Sbjct: 254 NVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVN 313
Query: 122 NR----ISNIH----------QVTG------QMIKGEF-DDESNWQMVEY---------- 150
R +S + QVTG M+K +F D ++ + Y
Sbjct: 314 RRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISE 373
Query: 151 ---VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+FD+L C + YN L+ L G + A R+ E T +GLFP++F + LV
Sbjct: 374 AFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILV 432
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 13/215 (6%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G + ++N + A Q G FEEA M P+ T ++++ + G
Sbjct: 486 MLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGH 545
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIH 128
+ +++E F E+ S G+ PSV+ Y +L+ +A D A+ +M N I+
Sbjct: 546 LRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNA 605
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ G + D+ + FD++ +G Y L+ +G E A R+
Sbjct: 606 IINGLCMTRRMDEAYKY------FDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYR 659
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAI 223
E R + P+ F H+ V+ ++HR ++ A +
Sbjct: 660 EMLDRKIQPDSFTHS--VFLKNLHRDYQVHAVQCV 692
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 36/203 (17%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
C + +M +G+ + + N ++ R +A Y ME+ P T +L
Sbjct: 164 CLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLD 223
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
YC G VD++ E E++ G P+ + Y +L+ +K + A GL++EM +
Sbjct: 224 SYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNS---- 279
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
LN Y YN L+ GL A +
Sbjct: 280 ---------------------------GLNVSAYT-----YNPLINGFCQKGLFVEAFDL 307
Query: 187 LDEATKRGLFPELFRHNKLVWSV 209
++E R FP L +N L++ +
Sbjct: 308 VEEMVNRRAFPTLSTYNTLMYGL 330
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ + + + M GVA + ++ +I A + A + +M + N T
Sbjct: 543 NGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVIT 602
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+++ C +DE+ + F E++ GILP+ Y +L+ W++A L EM
Sbjct: 603 YNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREML 662
Query: 121 TNRI 124
+I
Sbjct: 663 DRKI 666
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 7/199 (3%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
S M +S + SFN+++ + + G EA + E++ P T ++ C
Sbjct: 343 FSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCM 402
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G +D + +E+ G+ P + Y +L+ K A G +EM + +
Sbjct: 403 WGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFA 462
Query: 131 TGQMIKGEF---DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
I GE D + M E ++ G+ + YN + AL G E A +L
Sbjct: 463 YNTRIVGEMKIADTSVAFSMQE----EMLAAGFPPDVITYNVFVHALCQQGNFEEACDLL 518
Query: 188 DEATKRGLFPELFRHNKLV 206
+ GL P+ + ++
Sbjct: 519 ENMVSDGLIPDHVTYTSII 537
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
S+M E V N ++NA+I R +EA K + EME+ PN+ + +++ C
Sbjct: 588 FSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCN 647
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
G +E+ ++E+ I P + + L
Sbjct: 648 MGYWEEALRLYREMLDRKIQPDSFTHSVFL 677
Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 36/205 (17%), Positives = 78/205 (38%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + M G+ + ++N I + A EM P+ T
Sbjct: 439 GYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITY 498
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ C G +E+ + + + S G++P + Y ++ + K+ A + +EM +
Sbjct: 499 NVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLS 558
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ VT ++ + + F K+ + + YNA++ L +
Sbjct: 559 KGVAP-SVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMD 617
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + DE ++G+ P F + L+
Sbjct: 618 EAYKYFDEMEEKGILPNKFSYTILI 642
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 92/212 (43%), Gaps = 14/212 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + I SG + S++++I GR +A+K Y +M+K C PN
Sbjct: 418 GFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIY 477
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++S +C ++ + ++ +G P+V+ Y L+ K+ ++ +A + EM
Sbjct: 478 NALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVE 537
Query: 122 NRISNIHQVTGQMIKGEFDDE------SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
N + G +I+G F D+ S W+ + Y +G + + +N L+ L
Sbjct: 538 NGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILY-------KGLKVDVMMHNILIHGLC 590
Query: 176 CLGLRERAARVL-DEATKRGLFPELFRHNKLV 206
G + A V D K+ P L +N L+
Sbjct: 591 SAGKVDEALHVFSDMKEKKNCPPNLVTYNTLM 622
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 6/187 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEK----VRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
S NA+++AF + RF +A + + R PN +T VL C G +D +
Sbjct: 121 SHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTL 180
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140
F ++ + P + Y L+ AK +R D A LLDEM +R+ ++ G F
Sbjct: 181 FDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCF- 239
Query: 141 DESNWQMVEYVFDKL-NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
++ V V+DKL G + YN +L+ L G + V + L P++
Sbjct: 240 KAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDV 299
Query: 200 FRHNKLV 206
+ L+
Sbjct: 300 ITYGILI 306
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/207 (18%), Positives = 85/207 (41%), Gaps = 4/207 (1%)
Query: 4 YKECQAILSRMSESG----VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
+ + A + +S +A N ++N V+ + G + A+ + + + + P+
Sbjct: 135 FSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRI 194
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T ++ +D + + E+ S + P V+CY LL K+ ++ + D++
Sbjct: 195 TYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKL 254
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + + T ++ ++ V V++++ + Y L+ L G
Sbjct: 255 VKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGD 314
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ AARV E K GL + +N LV
Sbjct: 315 VDGAARVYSEIIKTGLVIDAAMYNSLV 341
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 47/258 (18%), Positives = 98/258 (37%), Gaps = 40/258 (15%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEA--------------IKAYVEMEK---- 51
+ S + ++G+ ++ +N++++ F Q GR +EA ++ Y M K
Sbjct: 321 VYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFD 380
Query: 52 -----------------VRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM 94
V C P+ T ++ C G +++ F+E + SG V
Sbjct: 381 SGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVF 440
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
Y ++ R DA + ++M + + +I G F ++ K
Sbjct: 441 SYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISG-FCQVYRTSDAVRIYSK 499
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214
+ G + YN L++ L + A+ V E + G P++ + L+ + +
Sbjct: 500 MADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKK 559
Query: 215 WEGGAYTAISVWLNKMYE 232
+ A+S+W +Y+
Sbjct: 560 ID----DALSIWKQILYK 573
Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 3/180 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVY 68
+L M S V + +NA++ + G FE+ ++ + ++ K PN T +L
Sbjct: 215 LLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGL 274
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G E E ++ + ++ + P V+ Y +L+ +S D A + E+ +
Sbjct: 275 CKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDA 334
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ ++KG F Q +D G +R YN +++ L+ G+ + A + D
Sbjct: 335 AMYNSLVKG-FCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWD 392
>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 830
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + L+ + +G + +N++++ F + G + EA+ EME C P+ T
Sbjct: 301 GMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITY 360
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ + Y AG +DE + S G++P+ + Y ++ Y K+ R DDA L +M
Sbjct: 361 NELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKM 418
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 92/210 (43%), Gaps = 10/210 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR-FEEAIKAYVEMEKVRCDPNERT 60
G YK + +M G+ ++N +++ + + GR + ++ EM + +E T
Sbjct: 230 GKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFT 289
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+S G++DE+++ E+K +G P + Y +L V+ K+ + +A +L EM
Sbjct: 290 CSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEME 349
Query: 121 TNRIS----NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N +++ ++ F DE V D + +G Y +++A
Sbjct: 350 DNNCPPDSITYNELAATYVRAGFLDEG-----MAVIDTMTSKGVMPNAITYTTVIDAYGK 404
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A R+ + G P ++ +N ++
Sbjct: 405 AGREDDALRLFSKMKDLGCAPNVYTYNSVL 434
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 89/235 (37%), Gaps = 11/235 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ S+M + G A N ++N+V+ + R E+ IK EM+ C PN T +L+V
Sbjct: 414 LFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCS 473
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + + +E+K+ G P + L++ YA+ D+ + EM + +
Sbjct: 474 EEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVT 533
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ +W+ E V + +G+ Y+ LL G +V E
Sbjct: 534 TYNALLNA-LAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKE 592
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGG----------AYTAISVWLNKMYEMF 234
+FP LV S R G Y V +N M MF
Sbjct: 593 IYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMF 647
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +L M G + D+FN +I ++ + G ++ K Y EM K P T
Sbjct: 476 GKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTY 535
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+L+ G ++ Q++++ G P+ Y +LL Y+K+ + E++
Sbjct: 536 NALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYD 595
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ + ++ + + +E FD+L GY + N++L +
Sbjct: 596 GQVFPSWILLRTLVLSNHKCR-HLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFS 654
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A +L + GL P LF +N L+
Sbjct: 655 KAREMLHFIHECGLQPNLFTYNCLM 679
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N VI+ F + G +EAI+ EM P T LS Y L DE+ E + +
Sbjct: 709 SYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFM 768
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
PS + Y +L+ Y K+ + ++A + ++ IS
Sbjct: 769 IEHNCRPSELTYKILVDGYCKAGKHEEAMDFVTKIKEIDIS 809
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG---RFEEAIKAYVEMEKVRCDPNER 59
++ + + +L + E G+ N ++N +++ + + + EE +K ++ +P+
Sbjct: 652 MFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKG---IQNSVPEPDVV 708
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+ V+ +C GL+ E+ E+ + GI P+++ Y L+ YA +D+A
Sbjct: 709 SYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEA 761
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E +LS M+ G+ ++N + + F+EA + M + C P+E T
Sbjct: 721 GLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTY 780
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGI 89
+ ++ YC AG +E+ + +IK I
Sbjct: 781 KILVDGYCKAGKHEEAMDFVTKIKEIDI 808
>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
Length = 1153
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 36/197 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M GV N S+ I Q RF+EA + +ME C P+ T V+ V C
Sbjct: 235 LLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLC 294
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG + ++K+ F ++K+S P + Y LL D G
Sbjct: 295 DAGRLSDAKDVFWKMKASDQKPDRVTYITLL----------DKCG--------------- 329
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
D + Q V +++ + +GY + Y A+++AL +G + A V DE
Sbjct: 330 -----------DSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDE 378
Query: 190 ATKRGLFPELFRHNKLV 206
++G+ PE + +N L+
Sbjct: 379 MKEKGISPEQYSYNSLI 395
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 88/197 (44%), Gaps = 1/197 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
M G+ + + NAV+ + + GR A + + E++ + P+ T ++ A
Sbjct: 448 HMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKAS 507
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
DE+ F ++ +G +P V+ L+ K + ++A+ L ++ +I +
Sbjct: 508 KADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYN 567
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ G E + V ++ +++ + + YN +L+ L G A +L T+
Sbjct: 568 TLLSG-LGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTE 626
Query: 193 RGLFPELFRHNKLVWSV 209
+G P+L +N +++ +
Sbjct: 627 KGCTPDLSSYNTVMYGL 643
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 101/240 (42%), Gaps = 20/240 (8%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + M+ G + N + I + + G+ +AI+ Y M+ P+ AVLS
Sbjct: 410 LFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLA 469
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNI- 127
+G + +K F E+K G+ P + Y M++ +K+++ D+A +M T + ++
Sbjct: 470 RSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVL 529
Query: 128 --HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ + + KG +E+ W++ F +L YN LL L G +
Sbjct: 530 ALNSLIDTLYKGGKGNEA-WKL----FHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMH 584
Query: 186 VLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAISVWLNKMYEMF 234
+L+E T P L +N ++ + ++ M E G +S + MY +
Sbjct: 585 LLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLI 644
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+ M E G++ S+N++I F + F+ A++ + M PN T
Sbjct: 367 GRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTH 426
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y +G ++ ++++ +KS GI+P V +L+ A+S R A + E+
Sbjct: 427 VLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKD 486
Query: 122 NRISNIHQVTGQMIK 136
+S MIK
Sbjct: 487 MGVSPDTITYTMMIK 501
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 6/149 (4%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N +I+ + R EEA+ + EM+K PN T +++ AG E+ + ++E+
Sbjct: 986 YNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELL 1045
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
G P+V Y L+ Y+ S D+AY D + ++G + DE+
Sbjct: 1046 IKGWKPNVFTYNALIRGYSVSGSTDNAYAAYDCVAVGVSLKTALISGLV------DENLI 1099
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ E +F ++ G G YN +L+A+
Sbjct: 1100 NIAEGLFAEMKRRGCGPDQFTYNLILDAI 1128
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 6/205 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G N S+ AV++A Q GR +EA+ + EM++ P + + +++S + A +
Sbjct: 344 MVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADM 403
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
D + E F + + G P+ + + + Y KS + A + M + I
Sbjct: 404 FDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVP-DVAAAN 462
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ M + VF +L G Y +++ + A + +
Sbjct: 463 AVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVET 522
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGG 218
G P++ N L+ + +++GG
Sbjct: 523 GCVPDVLALNSLIDT-----LYKGG 542
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 16/223 (7%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + ++ GV+ + S+N++I + A + EM+++ C P+E T +L
Sbjct: 756 EAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLIL 815
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ ++E E+ G + + Y +++ KS R + A L + + S
Sbjct: 816 DAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFS 875
Query: 126 NIHQVTGQMIK-----GEFDDESNW--QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
G ++ G+ D N +M+EY K NC YN LL G
Sbjct: 876 PTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGC-KPNCT-------IYNILLNGHRIAG 927
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSV-DVHRMWEGGAY 220
E ++ ++ ++G+ P++ + L+ ++ R+ +G +Y
Sbjct: 928 NTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSY 970
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E S M E+G + + N++I+ +GG+ EA K + ++++++ +P T +L
Sbjct: 511 EAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLL 570
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----T 121
S G V E +E+ S P+++ Y +L +K+ + A G+L M T
Sbjct: 571 SGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCT 630
Query: 122 NRISNIHQVTGQMIKGEFDDES 143
+S+ + V +IK E +E+
Sbjct: 631 PDLSSYNTVMYGLIKEERFEEA 652
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 102/262 (38%), Gaps = 42/262 (16%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L M+E G + S+N V+ + RFEEA + + +M+K+ P+ TL +L +
Sbjct: 619 GMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMKKILA-PDYATLCTILPSF 677
Query: 69 CFAGLVDESKEQFQE------------------------------------IKSSGILPS 92
GL+ E+ +E I S GIL +
Sbjct: 678 VKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSIEFAENIASRGILLN 737
Query: 93 VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVF 152
C L+ K + +A+ L ++ +S +I+G DE+ + E +F
Sbjct: 738 DFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRG-LVDENLIDIAEDLF 796
Query: 153 DKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
++ G G YN +L+A+ E RV E ++G +N ++ +
Sbjct: 797 TEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKS 856
Query: 213 RMWEGGAYTAISVWLNKMYEMF 234
+ E AI ++ N M E F
Sbjct: 857 KRLE----QAIDLYYNLMSEGF 874
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 93/231 (40%), Gaps = 34/231 (14%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + M G + ++N +++A + R EE ++ EM + + T ++S
Sbjct: 795 LFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLV 854
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-------- 121
+ ++++ + + + S G P+ Y LL K+ + DA L +EM
Sbjct: 855 KSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCT 914
Query: 122 --NRISNIHQVTG------QMIKGEFDDESNWQMVEY--VFDKLNCEG------------ 159
N + N H++ G Q+ + + N + Y + D L G
Sbjct: 915 IYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQL 974
Query: 160 YGLGMR----FYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
LG+ YN L++ L E A + +E K+G+ P L+ +N L+
Sbjct: 975 LELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLI 1025
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 89/248 (35%), Gaps = 56/248 (22%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL-- 61
+ E IL +M +SG + + VI+ GR +A + +M+ P+ T
Sbjct: 264 FDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYIT 323
Query: 62 ---------------------------------EAVLSVYCFAGLVDESKEQFQEIKSSG 88
AV+ C G +DE+ F E+K G
Sbjct: 324 LLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKG 383
Query: 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS----------NIHQVTGQMIKGE 138
I P Y L++ + K++ +D A L + M+ S N + +GQ +K
Sbjct: 384 ISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKA- 442
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
Q E++ K G + NA+L +L G A RV E G+ P+
Sbjct: 443 ------IQRYEHMKSK----GIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPD 492
Query: 199 LFRHNKLV 206
+ ++
Sbjct: 493 TITYTMMI 500
>gi|356528278|ref|XP_003532731.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like
[Glycine max]
Length = 1079
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 17/206 (8%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+I M SGVA + ++FN +I + Q + + A++ + + +E+T ++ Y
Sbjct: 808 SIFEHMISSGVAPSIETFNTMISVYGQDQKLDRAVEMFNQASSCSVPLDEKTYMNLIGYY 867
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AGL+ E+ + F +++ GI P + Y +++ VYA + G+L E T ++ +
Sbjct: 868 GKAGLMLEASQLFSKMQEGGIKPGKVSYNIMINVYANA-------GVLHE--TEKLFHTM 918
Query: 129 QVTGQM--------IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
Q G + + + N+ E + +G +N LL A GL
Sbjct: 919 QRQGYLPDSFTYLSLVQAYTRSLNYSKAEETIHAMQSKGIPPSCVHFNILLHAFIKAGLI 978
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A RV ++ + GL P+L H ++
Sbjct: 979 HEAKRVYEDLSTFGLVPDLVCHRTML 1004
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E + M GV N+ ++ I +F + G E+A K + EM P E T
Sbjct: 281 LHREVVHVWKDMLGKGVIPNNFTYTVAISSFVKEGLHEDAFKTFDEMRNYGVVPEELTYS 340
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++++ +G DE + +++++ GI+PS LL++Y K + A L EM N
Sbjct: 341 LLINLNAKSGNRDEVQRLYEDMRFRGIIPSNYTCASLLSLYYKYEDYPRALSLFSEMVRN 400
Query: 123 RISNIHQVTGQMIK 136
+IS + G +I+
Sbjct: 401 KISTDEVIYGLLIR 414
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 89/199 (44%), Gaps = 13/199 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +K + S + E G+ + FN ++ + ++ E + + +M PN T
Sbjct: 245 GRHKAMLSFYSAIKERGIILSVAVFNFMMSSLQKKSLHREVVHVWKDMLGKGVIPNNFTY 304
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+S + GL +++ + F E+++ G++P + Y +L+ + AKS D+ L ++M
Sbjct: 305 TVAISSFVKEGLHEDAFKTFDEMRNYGVVPEELTYSLLINLNAKSGNRDEVQRLYEDMRF 364
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMV----EYVFDKLNCEG--YGLGMRFYNALLEALW 175
I + ++ + E + + E V +K++ + YGL +R Y
Sbjct: 365 RGIIPSNYTCASLLSLYYKYEDYPRALSLFSEMVRNKISTDEVIYGLLIRIYGK------ 418
Query: 176 CLGLRERAARVLDEATKRG 194
LGL E A + +E RG
Sbjct: 419 -LGLYEDAHKTFEETKNRG 436
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL E + S+M E G+ S+N +I + G E K + M++ P+ T
Sbjct: 870 AGLMLEASQLFSKMQEGGIKPGKVSYNIMINVYANAGVLHETEKLFHTMQRQGYLPDSFT 929
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ Y + +++E ++S GI PS + + +LL + K+ +A + +++
Sbjct: 930 YLSLVQAYTRSLNYSKAEETIHAMQSKGIPPSCVHFNILLHAFIKAGLIHEAKRVYEDLS 989
Query: 121 T 121
T
Sbjct: 990 T 990
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 53/105 (50%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ E + + M G +S ++ ++++A+ + + +A + M+ P+
Sbjct: 905 AGVLHETEKLFHTMQRQGYLPDSFTYLSLVQAYTRSLNYSKAEETIHAMQSKGIPPSCVH 964
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
+L + AGL+ E+K ++++ + G++P ++C+ +L Y K
Sbjct: 965 FNILLHAFIKAGLIHEAKRVYEDLSTFGLVPDLVCHRTMLNGYLK 1009
Score = 36.6 bits (83), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y ++ S M + ++ + + +I + + G +E+A K + E + +E+T A
Sbjct: 387 YPRALSLFSEMVRNKISTDEVIYGLLIRIYGKLGLYEDAHKTFEETKNRGQLTSEKTYLA 446
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103
+ V+ +G VD++ E + +KSS + S Y +LL Y
Sbjct: 447 MAQVHLTSGNVDKALEVIELMKSSNLWFSRFAYIVLLQCY 486
>gi|218197431|gb|EEC79858.1| hypothetical protein OsI_21342 [Oryza sativa Indica Group]
Length = 1013
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 97/199 (48%), Gaps = 11/199 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M E+ VA N ++ VI ++ + G EEA+ A+ EM++ R P E T ++S+ G
Sbjct: 265 QMLEANVAPNQFTYTVVIGSYAKEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHG 324
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+E+ + E+K I+PS +L +Y K+ + A L EM N+I + G
Sbjct: 325 KGEEALGLYDEMKVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYG 384
Query: 133 QMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+++ G ++D + +F++++ G + Y A+ + + +RA +VL
Sbjct: 385 ILVRIYGKLGLYED------AQRMFEEIDKAGLLSDEQTYVAMAQVHMNVQNYDRALQVL 438
Query: 188 DEATKRGLFPELFRHNKLV 206
D R + P F ++ L+
Sbjct: 439 DAMRARNVKPSQFSYSALL 457
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY +I RM SG+ R+ +FN +I + QGG+ E+A++ + +++ +E+T
Sbjct: 730 GKLYSAV-SIYDRMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKT 788
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+LS Y AG E+ F +K GI P + + ++ YA S ++A + EM
Sbjct: 789 YTNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQ 848
Query: 121 TN 122
N
Sbjct: 849 KN 850
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 1/173 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
FN ++ + ++ + I + +M + PN+ T V+ Y G+++E+ + F E+K
Sbjct: 243 FNFMVSSLQKQKLHGKVIHLWEQMLEANVAPNQFTYTVVIGSYAKEGMLEEAMDAFGEMK 302
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+P Y +L+++ AK + ++A GL DEM I + ++ + +E ++
Sbjct: 303 RRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKVKSIVPSNYTCASVLTLYYKNE-DY 361
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+F ++ Y L+ LGL E A R+ +E K GL +
Sbjct: 362 SKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEIDKAGLLSD 414
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + E + SRM E G+ SFN +I A+ G EA + EM+K P+ T
Sbjct: 799 AGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHT 858
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ Y +++E Q + S + PS + L++ + K + D+A + ++M
Sbjct: 859 YLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMYNQM 917
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY E M + ++ + +V+ + + + +A+ + EME+ + P+E
Sbjct: 331 GLYDE-------MKVKSIVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIY 383
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +Y GL ++++ F+EI +G+L Y + V+ +D A +LD M
Sbjct: 384 GILVRIYGKLGLYEDAQRMFEEIDKAGLLSDEQTYVAMAQVHMNVQNYDRALQVLDAMRA 443
Query: 122 NRI 124
+
Sbjct: 444 RNV 446
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 54/111 (48%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL+ E + I M ++ +S ++ A+I A+ +G + +A +A M + P+
Sbjct: 834 SGLHNEAEIIFQEMQKNNHVPDSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTH 893
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111
++S + G +DE++ + +++ +GI + C ++ ++ DD
Sbjct: 894 FNHLISAFLKEGQIDEAQRMYNQMEEAGIPADLACCRTMMRMHLDHGYVDD 944
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 1/170 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ +E M +++ +I + G+ EEA+ Y EM+ P+ T
Sbjct: 289 GMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKVKSIVPSNYTC 348
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+VL++Y ++ F E++ + I+P + Y +L+ +Y K ++DA + +E+
Sbjct: 349 ASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEIDK 408
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
+ + Q M + + + N+ V D + Y+ALL
Sbjct: 409 AGLLSDEQTYVAMAQVHMNVQ-NYDRALQVLDAMRARNVKPSQFSYSALL 457
>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
Length = 703
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 92/212 (43%), Gaps = 14/212 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + I SG + S++++I GR +A+K Y +M+K C PN
Sbjct: 418 GFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIY 477
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++S +C ++ + ++ +G P+V+ Y L+ K+ ++ +A + EM
Sbjct: 478 NALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVE 537
Query: 122 NRISNIHQVTGQMIKGEFDDE------SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
N + G +I+G F D+ S W+ + Y +G + + +N L+ L
Sbjct: 538 NGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILY-------KGLKVDVMMHNILIHGLC 590
Query: 176 CLGLRERAARVL-DEATKRGLFPELFRHNKLV 206
G + A V D K+ P L +N L+
Sbjct: 591 SAGKVDEALHVFSDMKEKKNCPPNLVTYNTLM 622
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 6/187 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEK----VRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
S NA+++AF + RF +A + + R PN +T VL C G +D +
Sbjct: 121 SHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTL 180
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140
F ++ + P + Y L+ AK +R D A LLDEM + + ++ G F
Sbjct: 181 FDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCF- 239
Query: 141 DESNWQMVEYVFDKL-NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
++ V V+DKL G + YN +L+ L G + V + L P++
Sbjct: 240 KAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDV 299
Query: 200 FRHNKLV 206
+ L+
Sbjct: 300 ITYGILI 306
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 86/207 (41%), Gaps = 4/207 (1%)
Query: 4 YKECQAILSRMSESG----VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
+ + A + +S +A N ++N V+ + G + A+ + + + + P+
Sbjct: 135 FSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCI 194
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T ++ +D + + E+ SG+ P V+CY LL K+ ++ + D++
Sbjct: 195 TYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKL 254
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + + T ++ ++ V V++++ + Y L+ L G
Sbjct: 255 VKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGD 314
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ AARV E K GL + +N LV
Sbjct: 315 VDGAARVYSEIIKTGLVIDAAMYNSLV 341
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 47/258 (18%), Positives = 98/258 (37%), Gaps = 40/258 (15%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEA--------------IKAYVEMEK---- 51
+ S + ++G+ ++ +N++++ F Q GR +EA ++ Y M K
Sbjct: 321 VYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFD 380
Query: 52 -----------------VRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM 94
V C P+ T ++ C G +++ F+E + SG V
Sbjct: 381 SGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVF 440
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
Y ++ R DA + ++M + + +I G V ++ K
Sbjct: 441 SYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVR-IYSK 499
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214
+ G + YN L++ L + A+ V E + G P++ + L+ + +
Sbjct: 500 MADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKK 559
Query: 215 WEGGAYTAISVWLNKMYE 232
+ A+S+W +Y+
Sbjct: 560 ID----DALSIWKQILYK 573
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 3/180 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVY 68
+L M SGV + +NA++ + G FE+ ++ + ++ K PN T +L
Sbjct: 215 LLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGL 274
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G E E ++ + ++ + P V+ Y +L+ +S D A + E+ +
Sbjct: 275 CKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDA 334
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ ++KG F Q +D G +R YN +++ L+ G+ + A + D
Sbjct: 335 AMYNSLVKG-FCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWD 392
>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 819
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M E G+ + S+N +I + G+ EEA K +M K P+ T
Sbjct: 501 GNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTY 560
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G +D+ E K G++P++ Y ++L Y ++R D+A L +++
Sbjct: 561 NFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVY 620
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N++ + V ++ N+ + D + + Y++++ + C L E
Sbjct: 621 NKVE-LSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVE 679
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + +E GL P +F + L+
Sbjct: 680 EAKGIFEEMRNEGLMPNVFCYTALI 704
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N +I A + G F EA K M P T +++ C LV+E+K F+E++
Sbjct: 630 YNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMR 689
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ G++P+V CY L+ Y K + D +L EM +N I MI G
Sbjct: 690 NEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDG 741
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 1/179 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M GV + ++ I A+ +GG+ +EA+ +++M + PN T ++ C
Sbjct: 228 VFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLC 287
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G ++E+ + + + PS++ Y +L+ K ++D+A +L EM++ S
Sbjct: 288 KSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEF 347
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
V +I G + + N V D + +G +N LL+ E+A +VL+
Sbjct: 348 VFNALIDG-YSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLE 405
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 2/205 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E ++L M G + N FNA+I+ + + G ++A++ +M PN T
Sbjct: 327 FDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNT 386
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC-MLLAVYAKSNRWDDAYGLLDEMHTN 122
+L +C ++++ EQ E S +L C +L + KS+++D A ++ +
Sbjct: 387 LLQGFCRTNQMEQA-EQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSALKIVKALLLR 445
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
I + ++ G + + ++ F + +G NALL L G E
Sbjct: 446 NIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEE 505
Query: 183 AARVLDEATKRGLFPELFRHNKLVW 207
V E +RGL + +N L++
Sbjct: 506 VFPVCKEMVERGLVLDGISYNTLIF 530
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG E + +M E GV N ++N +I+ + GR EEA+ M + + +P+ T
Sbjct: 254 GGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVT 313
Query: 61 LEAVLSVYCFAGLV-----DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
+++ GLV DE+ E+ S G P+ + L+ Y++ DDA +
Sbjct: 314 YGILVN-----GLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRV 368
Query: 116 LDEM 119
D+M
Sbjct: 369 RDDM 372
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L +E + I M G+ N + A+I + + G+ ++ EM PN+ T
Sbjct: 677 LVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYT 736
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN------RWDDAYGLL 116
++ YC G E+ + E+ ++GI P + Y +L Y K N + D A L
Sbjct: 737 IMIDGYCKMGNTKEATKLLNEMIANGISPDTVTYTVLQKGYCKENELEETLQGDTAVPLE 796
Query: 117 DEMHTNRISNIH 128
+ +T + +H
Sbjct: 797 EITYTTLVDKLH 808
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM E+ V + ++ ++ + +F+EA VEM PNE A++ Y G
Sbjct: 301 RMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKG 360
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+D++ ++ G+ P+ + + LL + ++N+ + A +L+ + +N +S
Sbjct: 361 NMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLS 413
>gi|428186270|gb|EKX55120.1| hypothetical protein GUITHDRAFT_53115, partial [Guillardia theta
CCMP2712]
Length = 363
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 92/186 (49%), Gaps = 3/186 (1%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
++ +F+ I A +GG ++ A+ Y EME +PNE T A+++ G V ++ E F
Sbjct: 62 DTVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVF 121
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVTGQMIKGEFD 140
+ +++ GI+ +V + ++ K W A LL+EM I N+ + + E
Sbjct: 122 ERMQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKA 181
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
E+ + + +++ E + Y+A++ A GL E AAR+ + + GL P++
Sbjct: 182 AEARPAL--GLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDVV 239
Query: 201 RHNKLV 206
++ L+
Sbjct: 240 AYSTLI 245
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 60/115 (52%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM+ + + ++AV+ A + G +E A + + +M++ P+ ++ Y
Sbjct: 190 LLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDVVAYSTLIQAYQ 249
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
AG + E FQ ++ +G+ P+V+ Y +A AK+ W + GLL+ M +++
Sbjct: 250 RAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLERMKADKL 304
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +L M G+ N +++A I A + A+ M + P+
Sbjct: 147 GDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAAEARPALGLLERMTNEKIKPDIIVY 206
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AV++ AGL + + FQ++K G+ P V+ Y L+ Y ++ W A + M
Sbjct: 207 SAVMAACGKAGLWEPAARIFQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALEVFQLME 265
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/218 (19%), Positives = 83/218 (38%), Gaps = 1/218 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + RM G+ N +F A I + + G ++ A+K EM PN +
Sbjct: 111 GGQVSKAFEVFERMQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQA 170
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A +S A + + + + I P ++ Y ++A K+ W+ A + +M
Sbjct: 171 YSAAISACEKAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKMK 230
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ +I+ + W VF + G + Y + A G
Sbjct: 231 REGLTPDVVAYSTLIQA-YQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEW 289
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
R+ +L+ L P+ +N ++ ++ W+ G
Sbjct: 290 RRSLGLLERMKADKLRPDAVAYNFVISALSRGGQWDAG 327
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL++ I +M G+ + +++ +I+A+++ G + A++ + MEK PN
Sbjct: 216 AGLWEPAARIFQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIA 275
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL---- 116
++ AG S + +K+ + P + Y +++ ++ +WD LL
Sbjct: 276 YTEAIAACAKAGEWRRSLGLLERMKADKLRPDAVAYNFVISALSRGGQWDAGLTLLQMLE 335
Query: 117 -DEMHTN 122
DE N
Sbjct: 336 EDEAQPN 342
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + RM G+ + +++A++ A + G + + EM+ + PN T
Sbjct: 214 GFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTY 273
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ A +D++ F+E+ G P V+ Y +L+ + + D A L +M
Sbjct: 274 TICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRA 333
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ S +VT + +F + + V+ ++++ +GY + Y L+EAL G +
Sbjct: 334 SSHSP-DRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVD 392
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA +LD T +G+FP L +N ++
Sbjct: 393 RAFDMLDVMTTKGIFPNLHTYNTMI 417
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 19/247 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ I M + G NS +N +I F + G + A + + +M K P+ ++
Sbjct: 914 AGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKS 973
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G +DE+ + F+E+K +G+ P + Y ++ KS R D+A L EM
Sbjct: 974 YTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMK 1033
Query: 121 TNRIS-NIHQVTGQM----IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
IS +++ + I G+ D + ++++L G + YNAL+
Sbjct: 1034 NRGISPDLYTYNALILHLGIAGKVD------VAVKMYEELQLVGLEPSVFTYNALIRGHS 1087
Query: 176 CLGLRERAARVLDEATKRGLFP--ELFRH--NKLVWSVDVHR----MWEGGAYTAISVWL 227
G +++A V + G P E F NK + VH ++ G + S+ L
Sbjct: 1088 LSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLVHNPFGAVFIGLFFIFTSIRL 1147
Query: 228 NKMYEMF 234
N+ Y +F
Sbjct: 1148 NQFYYIF 1154
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +I+ + GR E+A+K + EM C PN +++ + +G +D + E F+++
Sbjct: 903 TYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKM 962
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
GI P + Y +L+ + R D+A +E+ + + V+ I
Sbjct: 963 VKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGL-DPDTVSYNFIINGLGKSRR 1021
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+F ++ G + YNAL+ L G + A ++ +E GL P +F +N
Sbjct: 1022 LDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNA 1081
Query: 205 LV 206
L+
Sbjct: 1082 LI 1083
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 93/202 (46%), Gaps = 2/202 (0%)
Query: 6 ECQAILSRMSES-GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+ Q + + +++ G+ +S+N +++ E+A++ + +M+ PN T +
Sbjct: 778 DAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLL 837
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L + + +++ + + E++S G P+ + + ++++ KSN + A L E+ +
Sbjct: 838 LDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDF 897
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
S G +I G + Q ++ +F+++ G G YN L+ G + A
Sbjct: 898 SPTPCTYGPLIDGLLKAGRSEQAMK-IFEEMLDYGCGPNSVIYNILINGFGKSGEIDFAC 956
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ + K G+ P+L + LV
Sbjct: 957 ELFKKMVKEGIRPDLKSYTILV 978
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 7/204 (3%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L M GV + S+ I+ + + G +AI + M+K P+ A L
Sbjct: 428 EALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASL 487
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
G + E+++ F ++ G+ P + Y ML+ Y+K+ + D A LL EM +
Sbjct: 488 YTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCE 547
Query: 126 NIHQVTGQMIKGEFDD---ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ +I + ++ W+M F +L + YN LL L G +
Sbjct: 548 PDVMIINSLINTLYKAGRVDAAWKM----FGRLKNLKLAPTVVTYNILLTGLGKEGKILK 603
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A + T+ G P N L+
Sbjct: 604 ALELFGSMTESGCPPNTITFNSLL 627
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 84/197 (42%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M+ G+ N ++N +I + R +EA++ ME + P + + Y
Sbjct: 397 MLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYG 456
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G ++ + F+ +K GI+PS+ L A++ R +A + +++H +S
Sbjct: 457 KSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSP-DS 515
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT M+ + + ++ +G + N+L+ L+ G + A ++
Sbjct: 516 VTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGR 575
Query: 190 ATKRGLFPELFRHNKLV 206
L P + +N L+
Sbjct: 576 LKNLKLAPTVVTYNILL 592
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 61/118 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + I + + + G++ +S ++N +++ + + G+ ++A + EM C+P+ +
Sbjct: 494 GRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMII 553
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++++ AG VD + + F +K+ + P+V+ Y +LL K + A L M
Sbjct: 554 NSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSM 611
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 102/261 (39%), Gaps = 49/261 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M+ESG N+ +FN++++ + + A+K + M + C+P+ T ++
Sbjct: 607 LFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLI 666
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE-MHTNRISNIH 128
G +D + F ++K + P + C L+ + R +DA ++ E +H +
Sbjct: 667 REGRIDYAFWFFHQMKKF-LSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNS 725
Query: 129 QVTGQMIKGEF----------------------DDESNWQMVEY------------VFDK 154
Q G++++ DD +++ VFDK
Sbjct: 726 QFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDK 785
Query: 155 LNCE-GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHR 213
G + YN L++ L E+A + ++ G P F +N L +D H
Sbjct: 786 FTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLL---LDAH- 841
Query: 214 MWEGGAYTAISVWLNKMYEMF 234
S +NK+Y+++
Sbjct: 842 --------GKSKRINKLYDLY 854
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 56/121 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + +M S + + ++ +++ F + G E + + EME P+ T
Sbjct: 318 AGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVT 377
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C +G VD + + + + GI P++ Y ++ K+ R D+A LL+ M
Sbjct: 378 YTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENME 437
Query: 121 T 121
+
Sbjct: 438 S 438
>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
Length = 888
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 91/198 (45%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+I M +SG+ + +N ++EAF + G + AI+ + M+K R P+ RT ++ +
Sbjct: 484 SIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGF 543
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG + + + ++ SG P+VM Y L+ + ++ + A +LD+M I+
Sbjct: 544 AVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNE 603
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+++G + EY F K+ G L + Y LL A G + A V
Sbjct: 604 HTYTIIMRGYAASGDIGKAFEY-FTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTR 662
Query: 189 EATKRGLFPELFRHNKLV 206
E + + + F +N L+
Sbjct: 663 EMSFQKIPRNTFIYNILI 680
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K L M SG A ++NA+I + + E A+ +M PNE T
Sbjct: 546 AGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHT 605
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y +G + ++ E F +IK SG+ V Y LL KS R A + EM
Sbjct: 606 YTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMS 665
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I + +I G W+ + + ++ +G + + + + A G
Sbjct: 666 FQKIPRNTFIYNILIDGWARRGDVWEAAD-LMKQMKEDGIPPNIHTFTSYINACCKAGDM 724
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+RA V+ E GL P + L+
Sbjct: 725 QRAENVIQEMADVGLKPNVKTFTTLI 750
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 8/195 (4%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+KE + L + N ++ +I A Q G + A + EME+ D
Sbjct: 345 LFKEAKTKLDNL-------NGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYH 397
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ Y A + F+ +K G PS++ Y L+ +Y K + A + EM ++
Sbjct: 398 SMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESH 457
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
I + ++ +I G F ++ +F+ + G YN L+EA +G +R
Sbjct: 458 GIKHNNKTYSMLING-FIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDR 516
Query: 183 AARVLDEATKRGLFP 197
A R+ + K + P
Sbjct: 517 AIRIFERMKKERMQP 531
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M E G+ N +F + I A + G + A EM V PN +T ++
Sbjct: 691 EAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLI 750
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ L D + + F+E+KS+G+ P Y C++ ++ +++
Sbjct: 751 KGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLSRAT 793
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RN+ +N +I+ + + G EA +M++ PN T
Sbjct: 652 GRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTF 711
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ ++ C AG + ++ QE+ G+ P+V + L+ +AK + D A +EM +
Sbjct: 712 TSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKS 771
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/181 (18%), Positives = 74/181 (40%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
F ++ + + G A + M +PN +++ Y A + + +E+K
Sbjct: 256 FGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMK 315
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
S G+ +V+ Y +L+A Y K+N + A L E T ++ N++ + I N
Sbjct: 316 SEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKT-KLDNLNGIIYSNIIHAHCQSGNM 374
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
E + ++ +G + Y++++ ++ V + + G P + + L
Sbjct: 375 DRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCL 434
Query: 206 V 206
+
Sbjct: 435 I 435
>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
Length = 584
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 11/200 (5%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L + G N+ S+N V++ R+E+A + EM + C PN T ++S C
Sbjct: 253 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 312
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRIS 125
GLV+ + E ++I G P+ + Y LL + K + D A LD M + + +S
Sbjct: 313 KGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVS 372
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+T GE D + + +L +G + YN +++ L G + A
Sbjct: 373 YNTLLTALCRSGEVD------VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 426
Query: 186 VLDEATKRGLFPELFRHNKL 205
+L+E +GL P++ ++ +
Sbjct: 427 LLNEMVSKGLQPDIITYSTI 446
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 1/201 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L M + ++ ++EA + +++A+K EM C P+ T V++
Sbjct: 181 AVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGI 240
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G VD++ E + + S G P+ + Y ++L + RW+DA L+ EM + +
Sbjct: 241 CQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMG-QKGCPPN 299
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT M+ + + V +++ G YN LL A ++A LD
Sbjct: 300 VVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLD 359
Query: 189 EATKRGLFPELFRHNKLVWSV 209
RG +P++ +N L+ ++
Sbjct: 360 LMVSRGCYPDIVSYNTLLTAL 380
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 8/182 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERT 60
GL + +L ++ + G + NS S+N ++ AF + + ++A+ A++++ R C P+ +
Sbjct: 314 GLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAM-AFLDLMVSRGCYPDIVS 372
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L+ C +G VD + E ++K G P ++ Y ++ K+ + +A LL+EM
Sbjct: 373 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 432
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + +T I E + F K+ G YNA++ LGL
Sbjct: 433 SKGLQP-DIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAII-----LGLC 486
Query: 181 ER 182
+R
Sbjct: 487 KR 488
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 1/186 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A L M G + S+N ++ A + G + A++ +++ C P + V+
Sbjct: 356 AFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGL 415
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG E+ E E+ S G+ P ++ Y + A + +R +DA ++ I
Sbjct: 416 TKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNT 475
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ +I G ++ +F + G Y L+E L GL + A +LD
Sbjct: 476 VLYNAIILGLCKRRETHSAID-LFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLD 534
Query: 189 EATKRG 194
E RG
Sbjct: 535 ELCSRG 540
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 89/259 (34%), Gaps = 73/259 (28%)
Query: 18 GVARNSDSFN--AVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
G AR D+ A+I+ GR EA + C P+ A+++ YC AG VD
Sbjct: 91 GSARRPDAGTCAALIKKLSASGRTAEARRVLAA-----CGPDVMAYNAMMAGYCGAGQVD 145
Query: 76 ESKE--------------------------------QFQEIKSSGILPSVMCYCMLLAVY 103
++ E+ +P V+ Y +LL
Sbjct: 146 AARRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEAT 205
Query: 104 AKSNRWDDAYGLLDEMH-----TNRISNIHQVTGQMIKGEFDD-------------ESN- 144
K + + A LLDEM + ++ V G +G DD E N
Sbjct: 206 CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 265
Query: 145 ---------------WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
W+ E + ++ +G + +N L+ L GL E A VL++
Sbjct: 266 VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 325
Query: 190 ATKRGLFPELFRHNKLVWS 208
K G P +N L+ +
Sbjct: 326 IPKYGCSPNSLSYNPLLHA 344
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE +L+ M G+ + +++ + + R E+AI+A+ +++ + PN
Sbjct: 418 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVL 477
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ C + + F + +G +P+ Y +L+ A +A LLDE+
Sbjct: 478 YNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 536
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 2/206 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ ++ M + G + N +I F + GR E+A+K + +M ++C PN T
Sbjct: 285 GRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTY 344
Query: 62 EAVL-SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ +++ E+ F+++K++G+ PS Y +L+ + K+NR + A LL+EM
Sbjct: 345 NTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMD 404
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I ++ +F +L R Y +++ L G
Sbjct: 405 EKGFPPCPAAYCSLINA-LGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRP 463
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A + +E K G P+++ +N L+
Sbjct: 464 SEAVDLFNEMKKIGCNPDVYAYNALM 489
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + M + G + ++NA++ + G EEA A ME+ C P+ +
Sbjct: 461 GRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSH 520
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ G +++ E F ++K S I P + Y +L ++S +++A L+ EM +
Sbjct: 521 NIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGS 580
Query: 122 NRISNIHQVTGQMI----KGEFDDESNW 145
H ++ K + DDE N+
Sbjct: 581 RGFEYDHITYSSILEAVGKVDEDDEPNF 608
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 91/211 (43%), Gaps = 9/211 (4%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
+ ++N++I Q G E+ + Y EM + C P+ T ++S + G D +
Sbjct: 165 TASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRL 224
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140
F E+K++G+ P+ Y LLA+Y KS + A GL+ EM + ++IKG
Sbjct: 225 FDEMKANGLHPTAKIYTTLLAIYFKSGD-EKALGLVQEMKDKGCAPTVFTYTELIKG-LG 282
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
+ VF + +G + N L+ G E A ++ D+ P +
Sbjct: 283 KSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVV 342
Query: 201 RHNKLVWSVDVHRMWEGGAYTA-ISVWLNKM 230
+N ++ + ++E A + + W KM
Sbjct: 343 TYNTVIKA-----LFESKAPASEAASWFEKM 368
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 81/188 (43%), Gaps = 1/188 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M +G+ + + ++ + + G E+A+ EM+ C P T ++
Sbjct: 224 LFDEMKANGLHPTAKIYTTLLAIYFKSGD-EKALGLVQEMKDKGCAPTVFTYTELIKGLG 282
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G V+++ F + G P V+ L+ ++ K+ R +DA L D+M + + +
Sbjct: 283 KSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVV 342
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+IK F+ ++ F+K+ G Y+ L++ E+A +L+E
Sbjct: 343 TYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEE 402
Query: 190 ATKRGLFP 197
++G P
Sbjct: 403 MDEKGFPP 410
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+ +I+ + GR EA+ + EM+K+ C+P+ A++S AG+++E+ + ++
Sbjct: 450 YAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTME 509
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+G P + + ++L A++ R + A + +M + I V+ I G +
Sbjct: 510 ENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKP-DAVSYNTILGSLSRSGMF 568
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ + ++ G+ Y+++LEA+
Sbjct: 569 EEAAKLMREMGSRGFEYDHITYSSILEAV 597
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 12/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G ++ ++I A + R+E A + ++E+++ + R ++
Sbjct: 399 LLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLG 458
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS---N 126
G E+ + F E+K G P V Y L++ ++ ++A+ L M N + N
Sbjct: 459 KCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLN 518
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
H + + E +M + D L YN +L +L G+ E AA++
Sbjct: 519 SHNIILNGLARTGRPEQATEMFMKMKDSL----IKPDAVSYNTILGSLSRSGMFEEAAKL 574
Query: 187 LDEATKRGLFPELFRHNKLVWS 208
+ E RG F ++ + +S
Sbjct: 575 MREMGSRG-----FEYDHITYS 591
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 86/210 (40%), Gaps = 7/210 (3%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M +GV +S +++ +I+ F + R E+A+ EM++ P ++++ A
Sbjct: 367 KMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 426
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ + E F E+K + S Y +++ K R +A L +EM +
Sbjct: 427 RYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYN 486
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNC---EGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ G M+E F L G + +N +L L G E+A + +
Sbjct: 487 ALMSGLV----RAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMK 542
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
+ P+ +N ++ S+ M+E A
Sbjct: 543 MKDSLIKPDAVSYNTILGSLSRSGMFEEAA 572
>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 7/210 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ E + M +G D+FN +I ++ + G F++A+ Y M + +P+ +
Sbjct: 187 NGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSS 246
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AVL+ GL +S++ E+K P+ + YC LL YA + L +E++
Sbjct: 247 YNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIY 306
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMV---EYVFDKLNCEGYGLGMRFYNALLEALWCL 177
S I + ++K S ++ E F +L G+ + NA++
Sbjct: 307 ----SGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRR 362
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVW 207
+ +A +LD + G P L +N L++
Sbjct: 363 QMVAKANEILDCMKRGGFTPSLTTYNSLMY 392
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K I M G N +FNA+I+ G+F E +K + +++ +C P+ T
Sbjct: 117 AGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVT 176
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+LSV+ G+ E F+E+K +G +P + L++ Y++ +D A + M
Sbjct: 177 WNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRM 235
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 83/178 (46%), Gaps = 1/178 (0%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
++M E G+ + ++ ++ F + G+ + A++ + EM C PN T A++ ++
Sbjct: 93 NQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNR 152
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131
G E + F++IK+ P ++ + LL+V+ ++ + G+ EM
Sbjct: 153 GKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTF 212
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I + ++ V+ ++ G + YNA+L AL GL +++ +VL E
Sbjct: 213 NTLI-SSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAE 269
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 95/216 (43%), Gaps = 3/216 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+K+ + +L+ M + N ++ +++ A+ G E E+ +P
Sbjct: 257 GGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVL 316
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
L+ ++ V L+ E++ F E++ G P + ++++Y + A +LD M
Sbjct: 317 LKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMK 376
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ T + + +N++ E + ++ +G + YN ++ A +C R
Sbjct: 377 RGGFTP-SLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYA-YCRNGR 434
Query: 181 ER-AARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
R A+RVL E + G P++ +N + S M+
Sbjct: 435 MRDASRVLSEMRESGPAPDIITYNTFIASYAADSMF 470
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N ++ F Q G E + EM++ P T ++S Y G D++ ++ +
Sbjct: 176 TWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRM 235
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+G+ P + Y +LA A+ W + +L EM R
Sbjct: 236 LEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGR 274
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +LS M ESG A + ++N I ++ F EAI M K C PN+ T
Sbjct: 432 NGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQST 491
Query: 61 LEAVLSVYCFAGLVDES 77
+++ YC DE+
Sbjct: 492 YNSIVDWYCKLNRRDEA 508
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 49/107 (45%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL M G + ++N+++ + + FE + + E+ P+ + V+ YC
Sbjct: 371 ILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYC 430
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
G + ++ E++ SG P ++ Y +A YA + + +A ++
Sbjct: 431 RNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVV 477
>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
Length = 502
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 8/189 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-----RCDPNERTLEAV 64
IL +M ESG+A ++N +++ F + G+ + A +++M+K C P+ + V
Sbjct: 232 ILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTV 291
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNR 123
L AG +D++++ F E+ G PS+ Y L+ V K +DA + D+M
Sbjct: 292 LHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGY 351
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I N+ T +I+G + DK+ EG ++ YN L+ L+ G E+A
Sbjct: 352 IPNVVTYT-VLIRG-LCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKA 409
Query: 184 ARVLDEATK 192
+ + +K
Sbjct: 410 LHLFETMSK 418
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 11/189 (5%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+ V+ G+ ++A K + EM + C P+ T A++ V C G V+++ F ++
Sbjct: 287 SYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDM 346
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G +P+V+ Y +L+ + + D A LLD+M Q +I G +E +
Sbjct: 347 IRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLI-GYLFEEGD 405
Query: 145 WQMVEYVFDKLN-CEGYGLGMRFYNALLEALWCLGLRER------AARVLDEATKRGLFP 197
+ ++F+ ++ E YN ++ A++ +R+R AAR++ E RG P
Sbjct: 406 IEKALHLFETMSKGEECLPNQDTYNIIISAMF---VRKRAEDMAVAARMVVEMVDRGYLP 462
Query: 198 ELFRHNKLV 206
F N+++
Sbjct: 463 RRFMFNRVL 471
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + MS G + ++NA+I+ + G E+A+ + +M + PN T
Sbjct: 298 AGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVT 357
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ C AG +D + + ++K G P+V Y +L+ + + A L + M
Sbjct: 358 YTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFETM 416
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 93/197 (47%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ +M E G+ N +F A+I+ F + G ++A+ A M + R P+ A+++ YC
Sbjct: 312 LVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYC 371
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +DE++E E+++ G+ P V+ Y +++ Y K+ A+ L +M +
Sbjct: 372 MVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAI 431
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I+ +E +F + G Y +L++ G ERA + D+
Sbjct: 432 TYSSLIR-VLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDK 490
Query: 190 ATKRGLFPELFRHNKLV 206
K G+ P++ ++ L+
Sbjct: 491 MVKAGVLPDVVTYSVLI 507
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 15/216 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M + G+ N +FN+++ + G+ E+A K + EM + P+ + ++ YC
Sbjct: 207 LVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYC 266
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
AG E+ F E+ GI+P V+ + L+ V K+ + A L+ +M N +
Sbjct: 267 KAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEV 326
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + G KG DD + V C + YNAL+ +G + A
Sbjct: 327 TFTALIDGFCKKGFLDDA-----LLAVRGMRQCR-IKPSVVCYNALINGYCMVGRMDEAR 380
Query: 185 RVLDEATKRGLFPELFRHNKLVWS----VDVHRMWE 216
+L E +GL P++ ++ ++ + D H +E
Sbjct: 381 ELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE 416
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 11/211 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E ++ + M++ G+ + +F ++I + G E A+ +M + NE T
Sbjct: 268 AGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVT 327
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ +C G +D++ + ++ I PSV+CY L+ Y R D+A LL EM
Sbjct: 328 FTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEME 387
Query: 121 TNRISNIHQVTGQMIKGEF----DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ VT I + D S +++ + + +K G Y++L+ L C
Sbjct: 388 AKGLKP-DVVTYSTIISAYCKNCDTHSAFELNQQMLEK----GVLPDAITYSSLIRVL-C 441
Query: 177 LGLRERAARVL-DEATKRGLFPELFRHNKLV 206
R A VL K GL P+ F + L+
Sbjct: 442 EEKRLSDAHVLFKNMIKLGLQPDEFTYTSLI 472
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 76/205 (37%), Gaps = 41/205 (20%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M GVA N ++N +I A G +EA+ +M C PN T +++ + AG
Sbjct: 141 MLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGE 200
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
VD ++ + G+ P+++ + ++ K+ + +DA + DEM
Sbjct: 201 VDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMR------------ 248
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
EG YN L+ G A V E T++
Sbjct: 249 ------------------------EGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQK 284
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGG 218
G+ P++ L +H M + G
Sbjct: 285 GIMPDVVTFTSL-----IHVMCKAG 304
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 58/108 (53%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M E GV ++ +++++I + R +A + M K+ P+E T +++ +C G
Sbjct: 420 QMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEG 479
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ + ++ +G+LP V+ Y +L+ +KS R +A LL +++
Sbjct: 480 NVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLY 527
>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +++L++M E G+ N+ + +++A + + EAI +M PN T A++
Sbjct: 457 EAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALV 516
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C AG +DE+ F ++ G+ P+V Y L+ K+ R D A LLDEM +S
Sbjct: 517 DGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMS 576
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ V ++ G + N Q + K+ G L + Y + L + + A
Sbjct: 577 LDNVVCTSLMDGHL-KQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEARE 635
Query: 186 VLDEATKRGLFPELFRHNKLV 206
VL E + G+ P+ +N L+
Sbjct: 636 VLSEMIENGITPDAVVYNCLI 656
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 8/232 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + ++ M G + ++NA++ F + GR E A + EM++ N T
Sbjct: 243 GELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTF 302
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ +C G+V E+ + F +++ G+ P+ + Y L+ K+ R DDA L +EM
Sbjct: 303 STFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQ 362
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ ++ VT ++ E E VF + G Y L+ + E
Sbjct: 363 QGVP-LNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSE 421
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV-DVHRMWEGGAYTAISVWLNKMYE 232
RA +L E +G+ ++ + L+W + ++ ++ E + LNKM E
Sbjct: 422 RALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKS------LLNKMDE 467
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 97/218 (44%), Gaps = 20/218 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +A+L+RM G + + ++N++I+ + + G EE K EM C P+ T
Sbjct: 208 GDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTY 267
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
A+++ +C G ++ + F E+K G++ +V+ + + + K+ +A L +M
Sbjct: 268 NALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRM 327
Query: 121 ----TNRISNIHQVTGQMIKGEFDDE--SNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
N ++ V G G DD +MV+ +G L + Y L++ L
Sbjct: 328 KGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQ--------QGVPLNVVTYTVLVDGL 379
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
G A V + G+ R N+L+++ +H
Sbjct: 380 CKEGKVAEAEDVFRLMERAGI-----RANELLYTTLIH 412
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
R+ E A N +FN +I+ + G EA M+ + C P+ T +++ Y G
Sbjct: 184 RLFEQLPAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCG 243
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++E ++ E++ G P V+ Y L+ + K R + AY EM
Sbjct: 244 ELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEM 290
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 25/206 (12%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + M +G+ N + +I E A+ EM+ ++ +
Sbjct: 383 GKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMK-------DKGM 435
Query: 62 EAVLSVY-------CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG 114
E +S+Y C +DE+K ++ G+ P+ + Y ++ K+ + +A
Sbjct: 436 ELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIA 495
Query: 115 LLDEM-----HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNA 169
LL +M N ++ V G G D+ + F+K+ G ++ Y A
Sbjct: 496 LLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISH------FNKMVDLGLEPNVQAYTA 549
Query: 170 LLEALWCLGLRERAARVLDEATKRGL 195
L++ L G ++A +LDE +G+
Sbjct: 550 LVDGLCKNGRLDKAVLLLDEMIDKGM 575
>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
Length = 477
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 2/194 (1%)
Query: 14 MSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
M E G+ + S N +I+A + G + A++ + EM C P+ T ++ C G
Sbjct: 146 MREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLG 205
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ E+KE F+E+++ P+V+ Y L+ +S D A LL+EM + I
Sbjct: 206 KIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYS 265
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ G + + +E + D + + M Y+ L+ L G + A +LD
Sbjct: 266 SLMDGHCKSGCSSRALE-LLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKL 324
Query: 193 RGLFPELFRHNKLV 206
+GL P+ + K++
Sbjct: 325 QGLRPDAGLYGKII 338
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 8/203 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M G +S ++ +I + G+ EA + + EME C P T +++ C
Sbjct: 178 IFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLC 237
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR-ISNIH 128
+ +D + +E+ S GI P+V Y L+ + KS A LLD M + R + N+
Sbjct: 238 QSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNM- 296
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+T + E Q + D++ +G Y ++ + AA LD
Sbjct: 297 -ITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLD 355
Query: 189 EATKRGLFPELFRHNKLVWSVDV 211
E G+ P N+L WS+ V
Sbjct: 356 EMVLGGISP-----NRLTWSLHV 373
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 111/249 (44%), Gaps = 23/249 (9%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ + +L RM E D F ++ A+ + + +A++ + +M++ C+P++++
Sbjct: 66 FRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYIT 125
Query: 64 VLSVYCFAGLVDESKEQ-----FQEIKSSGILPSVMCYCMLLAVYAK-SNRWDDAYGLLD 117
V FA LV E++ + ++ ++ GI PSV +L+ K S D A +
Sbjct: 126 V-----FAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFR 180
Query: 118 EMHTNRISNIHQVT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
EM NR H T G +I G + E +F ++ + + Y +L+ L
Sbjct: 181 EM-PNRGCPPHSYTYGTLIXGLCRLGKIGEAKE-LFKEMETKACSPTVVTYXSLIHGLCQ 238
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMM 236
+ A R+L+E +G+ P +F ++ L+ +G + S ++ +M +
Sbjct: 239 SKDLDSAIRLLEEMASKGIKPNVFTYSSLM---------DGHCKSGCSSRALELLDMMVS 289
Query: 237 GEDLPQLAT 245
LP + T
Sbjct: 290 RRHLPNMIT 298
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 9/201 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + M + ++ ++I Q + AI+ EM PN T
Sbjct: 205 GKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTY 264
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C +G + E + S LP+++ Y L+ K + +A +LD M
Sbjct: 265 SSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKL 324
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG-------YGLGMRFYNALLEAL 174
+ + G++I G F D + D++ G + L +R +N +++ L
Sbjct: 325 QGLRPDAGLYGKIISG-FCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGL 383
Query: 175 WCLGLRERAARVLDEATKRGL 195
C RA ++ RG+
Sbjct: 384 -CTEHPNRAFQLYLSMRTRGI 403
>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 11/209 (5%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L E + S M G++ + +++A+I F G+ ++AI + +M P+ T
Sbjct: 193 LVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFN 252
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ +C G + E K F + GI P+V+ YC L+ Y + + A + + M
Sbjct: 253 ILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQG 312
Query: 123 RISNIHQVTGQMIKG-----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
++ Q MI G + D+ N +F K++C+ + Y +L++ L
Sbjct: 313 GVNPDTQSYNIMINGFCKIKKVDEAMN------LFKKMHCKNIIPNVVTYTSLIDGLCKS 366
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G A +++DE RG+ P++ ++ ++
Sbjct: 367 GKISYALKLVDEMHDRGVPPDIITYSSIL 395
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 98/215 (45%), Gaps = 7/215 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + + + M + G+ N ++ ++++ + + +A + M + +P+ ++
Sbjct: 262 GKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSY 321
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
+++ +C VDE+ F+++ I+P+V+ Y L+ KS + A L+DEMH
Sbjct: 322 NIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHD 381
Query: 121 ---TNRISNIHQVTGQMIKGEFDDESN---WQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
I + + K D++ ++ + VF+ L +GY L + Y +++
Sbjct: 382 RGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGF 441
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
GL A +L + G P+ + ++ S+
Sbjct: 442 CVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSL 476
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 13/223 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + ++M + + +FN +++ F + G+ +E + M K PN T
Sbjct: 227 GKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTY 286
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
+++ YC V+++ F + G+ P Y +++ + K + D+A L +MH
Sbjct: 287 CSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHC 346
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N I N+ T +I G ++ V D+++ G + Y+++L+AL C +
Sbjct: 347 KNIIPNVVTYTS-LIDGLCKSGKISYALKLV-DEMHDRGVPPDIITYSSILDAL-CKNHQ 403
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAI 223
A L K +F +LF +++DV+ AYT +
Sbjct: 404 VDKAIALLTKLKDQVFEDLFVKG---YNLDVY------AYTVM 437
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 77/182 (42%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+ +I + G+ A++ ++ PN ++ C LV+E+ + + E+
Sbjct: 145 SYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 204
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S GI P V+ Y L++ + + DA L ++M I ++ G F +
Sbjct: 205 VSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDG-FCKDGK 263
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + VF + +G + Y +L++ + +A + + + G+ P+ +N
Sbjct: 264 MKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNI 323
Query: 205 LV 206
++
Sbjct: 324 MI 325
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 42/216 (19%), Positives = 83/216 (38%), Gaps = 14/216 (6%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y ++ +M G+A N + N +I F Q G+ + + + K DPN TL
Sbjct: 76 YHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANILKKGYDPNVITLTT 135
Query: 64 VLSVYCF-------------AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110
++ C G + + + + + P+V+ Y ++ K +
Sbjct: 136 LIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVN 195
Query: 111 DAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
+A+ L EM + IS +I G F ++ +F+K+ E + +N L
Sbjct: 196 EAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAID-LFNKMILENIKPDVYTFNIL 254
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
++ G + V K+G+ P + + L+
Sbjct: 255 VDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLM 290
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 7/207 (3%)
Query: 25 SFNAVIEA-FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE 83
S+NAV++A R A + EM + + PN T ++ +C AG +D + F
Sbjct: 171 SYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDR 230
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143
++ G LP+V+ Y L+ Y K + DD + LL M + + ++ ++ E
Sbjct: 231 MEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEP-NLISYNVVINGLCREG 289
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+ + +V ++N GY L YN L++ G +A + E + GL P + +
Sbjct: 290 RMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYT 349
Query: 204 KLVWSVDVHRMWEGGAYTAISVWLNKM 230
L +H M + G + +L++M
Sbjct: 350 SL-----IHSMCKAGNMNRATEFLDQM 371
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 3/200 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M +S V+ N ++N +I F G + A++ + MEK C PN T ++
Sbjct: 190 ENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDG 249
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
YC +D+ E + + G+ P+++ Y +++ + R + +L EM+ R ++
Sbjct: 250 YCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMN-KRGYSL 308
Query: 128 HQVT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+VT +IKG + E N+ + ++ G + Y +L+ ++ G RA
Sbjct: 309 DEVTYNTLIKG-YCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEF 367
Query: 187 LDEATKRGLFPELFRHNKLV 206
LD+ RGL P + LV
Sbjct: 368 LDQMRVRGLCPNERTYTTLV 387
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 94/196 (47%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L +M G+ N ++ +++ F Q G EA + EM P+ T A+++ +C
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCI 427
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
AG + ++ +++K G+ P V+ Y +L+ + +S D+A + +M I
Sbjct: 428 AGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTIT 487
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+I+G F ++ + +FD++ G Y AL+ A G ++A ++ +E
Sbjct: 488 YSSLIQG-FCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEM 546
Query: 191 TKRGLFPELFRHNKLV 206
++G+ P++ ++ L+
Sbjct: 547 VEKGVLPDVVTYSVLI 562
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 57/104 (54%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M G+ ++ +++++I+ F + R +EA + EM +V P+E T A+++ YC G
Sbjct: 475 KMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEG 534
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+ ++ + E+ G+LP V+ Y +L+ K R +A LL
Sbjct: 535 DLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLL 578
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M ++G + + ++NA+I G+ +AI +M++ P+ +
Sbjct: 394 GYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSY 453
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
VLS +C + VDE+ +++ + GI P + Y L+ + + R +A L DEM
Sbjct: 454 STVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEM 511
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 102/241 (42%), Gaps = 38/241 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM------------ 49
G KE +L+ M++ G + + ++N +I+ + + G F +A+ + EM
Sbjct: 289 GRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITY 348
Query: 50 --------------------EKVRCD---PNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
+++R PNERT ++ + G ++E+ +E+
Sbjct: 349 TSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMID 408
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
+G PSV+ Y L+ + + + DA +L++M ++ V+ + F +
Sbjct: 409 NGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTP-DVVSYSTVLSGFCRSYDVD 467
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER-AARVLDEATKRGLFPELFRHNKL 205
V K+ +G Y++L++ +C R + A + DE + GL P+ F + L
Sbjct: 468 EALRVKRKMVAKGIKPDTITYSSLIQG-FCEQRRTKEACDLFDEMLRVGLPPDEFTYTAL 526
Query: 206 V 206
+
Sbjct: 527 I 527
>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 613
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 9/201 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + M + G + ++N + + R EEA + M + DPN +
Sbjct: 404 GMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSF 463
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ ++C G + E++ FQ++K G P+V+ Y L+ Y+K + +AY L DEM +
Sbjct: 464 TIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMES 523
Query: 122 -NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN--C-EGYGLGMRFYNALLEALWCL 177
S+I+ T ++ G E + VE LN C +G + + Y A++ L
Sbjct: 524 IGMTSDIYTYT-TLVHG----ECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKE 578
Query: 178 GLRERAARVLDEATKRGLFPE 198
G E A R+ DE GL P+
Sbjct: 579 GRSEEAFRLYDEMMAAGLTPD 599
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K A+ ++E G+ N+ ++ A+I G+ + A EM+ D N
Sbjct: 334 GNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIF 393
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC G++DE+ ++ G + Y + K NR ++A L M
Sbjct: 394 NTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTM-V 452
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + V+ ++ E N E VF + +G + YN L++ G +
Sbjct: 453 EKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLK 512
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+ DE G+ +++ + LV
Sbjct: 513 EAYRLKDEMESIGMTSDIYTYTTLV 537
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/230 (19%), Positives = 96/230 (41%), Gaps = 6/230 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
+++E + M +G+ + S + A ++ + ++ + +M + + D +
Sbjct: 158 NSMFEEGFKVFDYMVHNGLKIDDRSCIVCLLALKRSDQMVMSLGFFKKMVEFKVDVTVYS 217
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ V+ C G V+ +K+ E+ GI P+V+ Y L+ Y K ++ +L M
Sbjct: 218 MTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLME 277
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+++ + T ++ + E VF+K+ G + + +++ LG
Sbjct: 278 MDKVV-YNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNM 336
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+RA + DE +RGL N + +H G A + +N+M
Sbjct: 337 KRAFALFDELNERGLVA-----NAHTYGALIHGTCNSGQLDAAEMLVNEM 381
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 15/213 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + + +M E GV + F ++I + G + A + E+ + N T
Sbjct: 298 SGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHT 357
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ C +G +D ++ E++S G+ +++ + L+ Y K D+A + D M
Sbjct: 358 YGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVME 417
Query: 121 T----NRISNIHQVTGQMIKGEFDDESN---WQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
N I + + G + K +E+ + MVE +G + +++
Sbjct: 418 KKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVE--------KGVDPNAVSFTIMIDI 469
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G A RV + K+G P + +N L+
Sbjct: 470 HCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLI 502
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 14/208 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M V N+ ++ +IE + G+ EA K + +M + + + +++S C
Sbjct: 272 MLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQC 331
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRI 124
G + + F E+ G++ + Y L+ S + D A L++EM + N +
Sbjct: 332 KLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLV 391
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ G KG D+ Q D + +G+ + YN + L L E A
Sbjct: 392 IFNTLINGYCKKGMIDEALRMQ------DVMEKKGFENDIFTYNTIAGGLCKLNRHEEAK 445
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVH 212
R L ++G+ P +D+H
Sbjct: 446 RWLFTMVEKGVDPNAV---SFTIMIDIH 470
>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 1/218 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+Y E ++L M E+ +S ++N ++ A+ + G +EA M K PN T
Sbjct: 329 AGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAIT 388
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ Y AG DE+ + F +K +G +P+ Y +L++ K +R ++ +L +M
Sbjct: 389 YTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMK 448
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+N S ++ T + ++ + V VF ++ G+ +N L+ A G
Sbjct: 449 SNGCSP-NRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSE 507
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A+++ E T+ G + +N L+ ++ W G
Sbjct: 508 VDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSG 545
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 37/206 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR-FEEAIKAYVEMEKVRCDPNERT 60
G Y++ + RM E G + ++N +++ F + GR + + + EM +E T
Sbjct: 224 GKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFT 283
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
VLS GL+ E+KE F E+KS G P + Y LL V+ K+ + +A +L EM
Sbjct: 284 CSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME 343
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N +C + YN L+ A G
Sbjct: 344 EN---------------------------------SCPADSVT---YNELVAAYVRAGFS 367
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ AA V++ TK+G+ P + ++
Sbjct: 368 KEAAGVIEMMTKKGVMPNAITYTTVI 393
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 91/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + ++S M G S++ +++ + +GG + + +++ + P+ L
Sbjct: 540 GDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLL 599
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L + S+ F K G P ++ + +L+++ ++N +D A G+L+ +
Sbjct: 600 RTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIRE 659
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +S ++ W+ E + L + YN +++ GL +
Sbjct: 660 DGLSPDLVTYNSLMDMYVRRGECWK-AEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQ 718
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+L E T+RG+ P +F +N V
Sbjct: 719 EAVRMLSEMTERGIRPCIFTYNTFV 743
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ K + M G + D+FN +I A+ + G +A K Y EM + + T
Sbjct: 470 GMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTY 529
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+L+ G + ++KS G P+ Y ++L YAK + + + +
Sbjct: 530 NALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKE 589
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+I + ++ F + E F GY M +N++L + +
Sbjct: 590 GQIFPSWMLLRTLLLANFKCRA-LAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYD 648
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A +L+ + GL P+L +N L+
Sbjct: 649 QAEGILESIREDGLSPDLVTYNSLM 673
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E +LS M+E G+ ++N + + G F E M K C PNE T
Sbjct: 715 GLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTF 774
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKS 86
+ V+ YC AG E+ + +IK+
Sbjct: 775 KMVVDGYCRAGKYSEAMDFVSKIKT 799
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 58/120 (48%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+Y + + IL + E G++ + ++N++++ + + G +A + +EK + P+ +
Sbjct: 646 MYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYN 705
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ +C GL+ E+ E+ GI P + Y ++ Y + + +++ M N
Sbjct: 706 TVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKN 765
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 57/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +++ +L M G+ + + + V+ A + G EA + + E++ +P T
Sbjct: 259 GRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVT 318
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+L V+ AG+ E+ +E++ + + Y L+A Y ++ +A G+++ M
Sbjct: 319 YNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMM 377
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 57/116 (49%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + IL + +S + + S+N VI+ F + G +EA++ EM + P T +
Sbjct: 684 KAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFV 743
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
S Y G+ E ++ + + + P+ + + M++ Y ++ ++ +A + ++ T
Sbjct: 744 SGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKT 799
>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
Length = 740
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 103/228 (45%), Gaps = 9/228 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + I+ M ++G N +FN+++E + G EEA M + +PN
Sbjct: 380 GRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIY 439
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
++ YC G +D++ F+++ G+ P+ + Y ++L ++ R A + EM
Sbjct: 440 GTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIE 499
Query: 121 TNRISNIHQ---VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ +IH V G + + DE+N + +KL + +N ++ A++ +
Sbjct: 500 SGTTVSIHTYGVVLGGLCRNNCTDEANM-----LLEKLFAMNVKFDIITFNIVISAMFKV 554
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
G R+ A + D + GL P + ++ ++ ++ +E ISV
Sbjct: 555 GRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISV 602
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 98/206 (47%), Gaps = 3/206 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ ++I+ +M +SG+A + +++ +I+ + ++A + +M + PN T +++
Sbjct: 101 KAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLI 160
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSV-MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
Y +G+ +ES F+++ S G++P+V C + A++ K R ++A + D M
Sbjct: 161 HGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALF-KHGRTNEAKCIFDSMVLKGP 219
Query: 125 SNIHQVTGQMIKG-EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
M+ G +S V +F+ + +G +N L+ A G+ ++A
Sbjct: 220 KPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKA 279
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSV 209
+ ++ +G+ P+ ++ S+
Sbjct: 280 MLIFEDMQNKGMIPDTVTFATVISSL 305
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ I + M G+A N FN +I A+ + G ++A+ + +M+ P+ T V+
Sbjct: 243 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 302
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S C G +D++ +F + G+ PS Y L+ A L+ EM I
Sbjct: 303 SSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIP 362
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
I E + + D + G + +N+L+E +G E A
Sbjct: 363 PPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 422
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+LD G+ P + + LV
Sbjct: 423 LLDAMASIGIEPNCYIYGTLV 443
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/233 (19%), Positives = 95/233 (40%), Gaps = 9/233 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + I M G+ ++ +F VI + + GR ++A+ + M + P+E
Sbjct: 274 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 333
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
++ C G + ++KE E+ + I P V + ++ K R + ++D M
Sbjct: 334 GCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV 393
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
T + N+ VT + + N + + D + G Y L++ G
Sbjct: 394 QTGQRPNV--VTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGR 451
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ A V + +G+ P +++S+ +H +++ TA ++M E
Sbjct: 452 IDDALTVFRDMLHKGVKP-----TSVLYSIILHGLFQARRTTAAKKMFHEMIE 499
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 98/236 (41%), Gaps = 34/236 (14%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M G+ ++ ++N++I+ F + GR ++ + + EM+ + C+P+ T A+++
Sbjct: 282 RGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINC 341
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TN 122
+C G + E ++E+K +G+ P+V+ Y L+ + K A +M N
Sbjct: 342 FCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPN 401
Query: 123 RISNIHQVTGQMIKGEFDDE-----------SNWQMVEY------------------VFD 153
+ + G D W +V Y +F
Sbjct: 402 EYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFG 461
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
K++ G + YNAL+ +RA +L+E RG+ P+L + +W +
Sbjct: 462 KMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGL 517
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + + +M +GV N S+NA+I F + + A++ E++ P+
Sbjct: 454 KEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF 513
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ C ++ +K E+K GI + + Y L+ Y KS + LLDEM I
Sbjct: 514 IWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDI 573
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+I G ++ + V+Y N G + A+++ L E A
Sbjct: 574 EVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAAT 633
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ ++ ++GL P+ + L+
Sbjct: 634 TLFEQMVQKGLVPDRTAYTSLM 655
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
F+A+ G EEAI+ + +M++ R P R+ +L + G D+ K F+++
Sbjct: 195 FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 254
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+G P+V Y +++ K + A GL +EM + MI G F
Sbjct: 255 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG-FGKVGRL 313
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
F+++ + YNAL+ G E GL P + ++ L
Sbjct: 314 DDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTL 373
Query: 206 V 206
V
Sbjct: 374 V 374
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ +E S+M V + S N ++ F + G+ ++ + + +M P T
Sbjct: 206 GMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTY 265
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G V+ ++ F+E+K G++P + Y ++ + K R DD +EM
Sbjct: 266 NIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK- 324
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +T + F + + ++ G + Y+ L++A G+ +
Sbjct: 325 DMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQ 384
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A + + + GL P + + L+
Sbjct: 385 QAIKFYVDMRRVGLVPNEYTYTSLI 409
>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Brachypodium distachyon]
Length = 858
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 105/232 (45%), Gaps = 6/232 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +A+ M G+ R+ ++N I+A + G E A++ ++ME PN T
Sbjct: 318 GHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTY 377
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y DE+ + ++++KS GI +CY +LA+Y K+ ++ + + DEM
Sbjct: 378 STLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMED 437
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I +I G + + +V ++ + G + Y+ L++ G+
Sbjct: 438 SGIEKDTVTYNSLING-YGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHG 496
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
A V + + GL P++ +++S + + + G LN M EM
Sbjct: 497 DAFNVYLDFKESGLKPDV-----VLFSSFIDTLAKNGLVEWALSLLNDMTEM 543
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 113/261 (43%), Gaps = 27/261 (10%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + ++L+ M+E G+ N ++N +I+AF + E EM V N + +
Sbjct: 528 GLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKSKVLSEEDPEAGEMGIVGVY-NGQII 586
Query: 62 EAVLSVYCFAGLVDESK----------EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111
A V +D E FQ++ G+ P+V+ + +L ++ N ++D
Sbjct: 587 RAANPVTRGRSAIDVRMRRSQELYFILELFQKMVQQGVRPNVVTFSAILNACSRCNNFED 646
Query: 112 AYGLLDEMHTNRISN-IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
A LL+++ N ++ V ++ G + W + +F++L FYNAL
Sbjct: 647 AALLLEQLRL--FDNFVYGVAYGLLMGY---QEIWSQAQSLFNQLGRMDSPTSSAFYNAL 701
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS---VDVHRMWEGGAYTAISVWL 227
+ LW G R+ A V+ E R ++ WS +D+H M G A + WL
Sbjct: 702 TDVLWHFGQRQGAQLVVLEGVNRRVWDN-------TWSEFCLDLHLMSCGAAQAMVHAWL 754
Query: 228 NKMYEMFMMGEDLPQLATVVV 248
+ + G +P+ +++
Sbjct: 755 LNVRSIVFEGRAMPEFLSILT 775
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 103/243 (42%), Gaps = 41/243 (16%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG---RFEEAIKAYVEMEKVRCDPNE 58
GL E +L M +G+ + ++NAVI+A +GG RF + + +M + R P+
Sbjct: 247 GLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRF--TLGYFRQMLRDRLCPDR 304
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGI----------------------------- 89
+T ++LS AG +++++ F E+ GI
Sbjct: 305 KTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLD 364
Query: 90 ------LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143
P+V+ Y L+ Y+K ++D+A L ++M + I + +V + +
Sbjct: 365 MEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGI-QLDRVCYNTVLAIYVKAG 423
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+ + V D++ G YN+L+ G + + ++ + +RG+ P + ++
Sbjct: 424 KYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYS 483
Query: 204 KLV 206
L+
Sbjct: 484 TLI 486
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN---RWDDAYGLLDE 118
A++S Y +GLV+E+ + +K +G+ P+ + Y ++ K R+ G +
Sbjct: 237 SALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRF--TLGYFRQ 294
Query: 119 MHTNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
M +R+ + ++ G +D +FD++ G G + YN ++A
Sbjct: 295 MLRDRLCPDRKTFNSLLSACSRAGHLED------ARALFDEMIHLGIGRDIYTYNTFIDA 348
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ G E A +VL + + + P + ++ L+
Sbjct: 349 ICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLI 381
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 46/97 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M GVA + +++ +I+ + + G +A Y++ ++ P+ + +
Sbjct: 466 LVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLA 525
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
GLV+ + ++ GI P+V+ Y ++ + KS
Sbjct: 526 KNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKS 562
>gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 90/189 (47%), Gaps = 1/189 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A M ++ N + N V+ AF + G+ E+A++ + EME V PN+ + ++ Y
Sbjct: 202 AFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGY 261
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C GL++ + + +++ G+ +V+ + L+ + K + +A + EM ++
Sbjct: 262 CRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNT 321
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+I G N +M ++++++ G + YNAL+ L G ++AA ++
Sbjct: 322 ITYNTLINGH-SQMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVK 380
Query: 189 EATKRGLFP 197
E K L P
Sbjct: 381 ELDKENLVP 389
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 87/208 (41%), Gaps = 1/208 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M G +S NA + + R + A+ Y EM + R PN T V+ +C +G
Sbjct: 171 QMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEMRRCRISPNVYTRNMVMRAFCKSG 230
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++++ + F+E++S GI P+ Y L+ Y + + A L + M +
Sbjct: 231 KLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEANVVTFN 290
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+I G F E VF ++ YN L+ +G E R+ +E ++
Sbjct: 291 SLIDG-FCKEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMSR 349
Query: 193 RGLFPELFRHNKLVWSVDVHRMWEGGAY 220
G+ ++ +N L+ + + AY
Sbjct: 350 NGVKADILTYNALILGLCKEGKTKKAAY 377
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 95/240 (39%), Gaps = 6/240 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G L K Q + M G++ N S+N +I + + G A+K M + N T
Sbjct: 230 GKLEKAVQ-VFEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEANVVT 288
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +C G + E+ + F E+K + P+ + Y L+ +++ + L +EM
Sbjct: 289 FNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMS 348
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + +I G E + Y+ +L+ E ++AL+
Sbjct: 349 RNGVKADILTYNALILG-LCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQCIRNNS 407
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
+RA ++ + G P N LV + + +EG A V + F G D+
Sbjct: 408 DRAFQLYKSMVRIGCHPNEQTFNMLVSAFCKNEDFEG----AFLVLMEMFERCFTPGSDV 463
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 3/154 (1%)
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
CD + R +++ + + F ++K G LP+V L+ +R D A
Sbjct: 142 CDSSPRVFDSLFKTLAHMKKFRNATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIAL 201
Query: 114 GLLDEMHTNRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
EM RIS N++ T M+ F + VF+++ G YN L+
Sbjct: 202 AFYKEMRRCRISPNVY--TRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIM 259
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
GL A ++ + +G+ + N L+
Sbjct: 260 GYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLI 293
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 75/181 (41%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
F+++ + +F A +++M+ P + A LS VD + ++E++
Sbjct: 149 FDSLFKTLAHMKKFRNATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEMR 208
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
I P+V M++ + KS + + A + +EM + IS +I G + +
Sbjct: 209 RCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMG-YCRKGLL 267
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+ + + +G + +N+L++ G A++V E + P +N L
Sbjct: 268 NSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTL 327
Query: 206 V 206
+
Sbjct: 328 I 328
>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 393
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE +L++M+ V N +F +++ + G ++A M K R +PN T
Sbjct: 102 GQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKKARNVLAIMIKQRVEPNIVTY 161
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ Y V+++K+ F I G+ P+V Y +++ K+ D+A L EMH+
Sbjct: 162 NSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKMVDEAANLFKEMHS 221
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G + + +++ +++ G + YN+LL+ L +
Sbjct: 222 KNMVPDTVAYNSLIDGLCKSRRIYDVWDFI-GEMHDRGQPANIITYNSLLDGLCKNHQVD 280
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A +L + +G+ P ++ + LV
Sbjct: 281 KAITLLTKIKNQGIRPNIYTYTILV 305
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 34/231 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + +L+ M + V N ++N++++ + +A + + + PN R+
Sbjct: 137 GEVKKARNVLAIMIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSY 196
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ +++ C +VDE+ F+E+ S ++P + Y L+ KS R D + + EMH
Sbjct: 197 KVMINGLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHD 256
Query: 122 N-RISNI-------------HQV--------------------TGQMIKGEFDDESNWQM 147
+ +NI HQV T ++ +
Sbjct: 257 RGQPANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTILVDGLCKNGRLRD 316
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+ V+ L +GY L R Y ++ L G + A +L + P+
Sbjct: 317 AQEVYQDLLNKGYQLDARIYTVMINGLCKEGFLDEALSLLSKMEDNKCTPD 367
>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
Length = 734
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 6/205 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G+ N+ FN +I GR E + ME V P+ + ++S YC AG
Sbjct: 405 MLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGR 464
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
DE+++ F + S G+ P+ + Y LL Y ++R DDAY L EM ++
Sbjct: 465 TDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNT 524
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ G F + + E + +N G + YN +L L + A ++ +
Sbjct: 525 ILHGLFQTKRFSEAKELYLNMIN-SGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSK 583
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGG 218
GL + N + +++ + + +GG
Sbjct: 584 GL-----QLNIITFTIMIGALLKGG 603
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 34/241 (14%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---CDPNERTLEAVLS 66
+L RM E G ++ S++ +++ F R EEA++ M C PN T V+
Sbjct: 156 LLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVID 215
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN---- 122
C A L D ++ FQ++ +G+ P+ Y L+ Y +W + +L++M
Sbjct: 216 GLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKP 275
Query: 123 -------------RISNIHQVTGQMIKGEFDDESNWQMVEY--------------VFDKL 155
+S +H M++ + + + + +F+K+
Sbjct: 276 DCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKM 335
Query: 156 NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
G + Y AL++AL LG + A ++ G+ P + N LV+ + W
Sbjct: 336 RQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKW 395
Query: 216 E 216
E
Sbjct: 396 E 396
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 100/221 (45%), Gaps = 15/221 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ + + +M ++GV N+D++N +I + G+++E ++ +M P+ T
Sbjct: 222 LFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYG 281
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++L+ C + E + +G+ P + + + YAK D A + ++M +
Sbjct: 282 SLLNYLC---ALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQH 338
Query: 123 RISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+S G +I G DD E F+++ EG + +N+L+ L +
Sbjct: 339 GLSPNVVNYGALIDALCKLGRVDD------AEVKFNQMINEGVTPNIVVFNSLVYGLCTV 392
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSV-DVHRMWEG 217
ERA ++ E +G+ P N L+ ++ +V R+ EG
Sbjct: 393 DKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEG 433
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 9/205 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + ++ M GV ++ S+ +I + GR +EA K + M + P E T
Sbjct: 428 GRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTY 487
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL-LDEMH 120
+L YC A +D++ F+E+ G+ P V+ Y +L ++ R+ +A L L+ ++
Sbjct: 488 NTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMIN 547
Query: 121 TNRISNIHQ---VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ +I+ + + K DE+ ++M F L +G L + + ++ AL
Sbjct: 548 SGTKCDIYTYNIILNGLCKSNCVDEA-FKM----FQSLCSKGLQLNIITFTIMIGALLKG 602
Query: 178 GLRERAARVLDEATKRGLFPELFRH 202
G +E A + GL P + +
Sbjct: 603 GRKEDAMDLFAAIPANGLVPNVVTY 627
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 23/212 (10%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + L M E+G++ + FN A+ + G ++A+ + +M + PN A++
Sbjct: 292 EMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALI 351
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLLDE--- 118
C G VD+++ +F ++ + G+ P+++ + L+ ++W+ A Y +LD+
Sbjct: 352 DALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGIC 411
Query: 119 ----MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
I N+ V G++++G + D + G Y L+
Sbjct: 412 PNAVFFNTLICNLCNV-GRVMEG-----------RRLIDLMEHVGVRPDAFSYTPLISGY 459
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A +V D GL P +N L+
Sbjct: 460 CLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLL 491
>gi|357117116|ref|XP_003560320.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Brachypodium distachyon]
Length = 598
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L+RM +GVA + FN ++ F RFE+A + EME+ C PN +
Sbjct: 205 GKLDEAKHVLARMKAAGVAPDVVVFNTLLAGFVAADRFEDAFELAREMERRDCPPNAVSY 264
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G VDE F E++ G P + Y L++ + K+ R Y LD M
Sbjct: 265 TTLMQGLGSRGRVDEVMRVFVEMRRKGCAPDSVTYGTLVSAFCKAGRLSQGYEFLDAMSR 324
Query: 122 NRI 124
+ +
Sbjct: 325 DAL 327
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 42 AIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101
A + VE + R + R A+L +C G +DE+K +K++G+ P V+ + LLA
Sbjct: 175 AAERLVEELQPRLPLSIRHYTALLYGWCRLGKLDEAKHVLARMKAAGVAPDVVVFNTLLA 234
Query: 102 VYAKSNRWDDAYGLLDEMH-----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN 156
+ ++R++DA+ L EM N +S + G +G D+ V VF ++
Sbjct: 235 GFVAADRFEDAFELAREMERRDCPPNAVSYTTLMQGLGSRGRVDE------VMRVFVEMR 288
Query: 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+G Y L+ A G + LD ++ L
Sbjct: 289 RKGCAPDSVTYGTLVSAFCKAGRLSQGYEFLDAMSRDAL 327
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 90/199 (45%), Gaps = 1/199 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ RM + G NS +++ +I GR EEA+ EM + +P T L
Sbjct: 258 AMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSL 317
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C AG E+ E ++K G +P++ + L++ ++ +++ A GL +M + +
Sbjct: 318 CDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPT- 376
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT + + E ++ +F + G + YN +++ +G ++A + D
Sbjct: 377 TVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFD 436
Query: 189 EATKRGLFPELFRHNKLVW 207
+ K G P + +N L++
Sbjct: 437 KMLKAGSSPNVITYNTLIY 455
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 36/200 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G+ ++ ++ +I F +GG+ E A + M + PN T A++ Y
Sbjct: 469 LLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYF 528
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
VD++ F ++ SG LPS Y ++++ ++K TN IS
Sbjct: 529 NLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK---------------TNSISEAEN 573
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
G+M+K +G + Y + ++ L G A ++ E
Sbjct: 574 FCGKMVK---------------------QGLLPNVITYTSFIDGLCRNGRTGLAFKIFHE 612
Query: 190 ATKRGLFPELFRHNKLVWSV 209
KR FP L+ ++ L++ +
Sbjct: 613 MEKRNYFPNLYTYSSLIYGL 632
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + I+S + N+ ++ ++I + + A + M K CDPN T
Sbjct: 216 GRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTY 275
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G ++E+ + +E+ GI P+V Y + L + +A LL +M
Sbjct: 276 STLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKK 335
Query: 122 NR-ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ NI T +I G + +++ ++ K+ +G YNAL+ L G
Sbjct: 336 RGCVPNIQTFTA-LISG-LSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRF 393
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E A + G P +N+++
Sbjct: 394 ETAFTIFKWMLSHGSLPSTQTYNEII 419
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L M + G+ ++ + + G EA++ +M+K C PN +T
Sbjct: 286 GRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTF 345
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++S G + + + ++ + G++P+ + Y L+ R++ A+ + M +
Sbjct: 346 TALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLS 405
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ Q ++IK F + Q +FDK+ G + YN L+ G
Sbjct: 406 HGSLPSTQTYNEIIKC-FCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLN 464
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+L+ GL P+ + + +L+
Sbjct: 465 NAMRLLEIMKGNGLKPDAWTYTELI 489
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 1/194 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M G+ + ++NA+I GRFE A + M P+ +T ++ +C G
Sbjct: 367 KMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMG 426
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ ++ F ++ +G P+V+ Y L+ Y K ++A LL+ M N +
Sbjct: 427 DIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYT 486
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++I G F + +F + G Y A+++ + L + A + + +
Sbjct: 487 ELISG-FSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVE 545
Query: 193 RGLFPELFRHNKLV 206
G P +N ++
Sbjct: 546 SGNLPSSQTYNVMI 559
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 94/208 (45%), Gaps = 11/208 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + ++ M E G++ N ++ A+I+ + + ++A+ + +M + P+ +T
Sbjct: 495 GGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQT 554
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S + + E++ ++ G+LP+V+ Y + ++ R A+ + EM
Sbjct: 555 YNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEME 614
Query: 121 T-NRISNIHQ----VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
N N++ + G +G +D + ++ +L G + Y L++ L
Sbjct: 615 KRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLA----RLTHYGCEPNVDTYTTLVKGLC 670
Query: 176 CLGLRERAARVLDEATKRGLFP--ELFR 201
G A +++ K+GL P E++R
Sbjct: 671 GEGRCYEADQLVVSMQKKGLQPSEEIYR 698
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 7/215 (3%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M SG+ + +FN +I + GR +EA + + PN T +++ +C
Sbjct: 192 KMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNH 251
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVT 131
+D + F + G P+ + Y L+ R ++A +L+EM I ++ T
Sbjct: 252 NLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYT 311
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
++ D + + VE + K+ G ++ + AL+ L G E A + +
Sbjct: 312 IPLV-SLCDAGCSSEAVE-LLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKML 369
Query: 192 KRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
GL P +N L+ + V EG TA +++
Sbjct: 370 ADGLVPTTVTYNALINQLCV----EGRFETAFTIF 400
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 14/180 (7%)
Query: 35 QGGRFEE---AIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP 91
Q G+F+ A Y++M P+ T ++++ C G V E+K I P
Sbjct: 176 QLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYP 235
Query: 92 SVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGEFDDESNWQ 146
+ Y L+ + +++ D A+ + D M N ++ + G +G E
Sbjct: 236 NAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRL--EEAMD 293
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
M+E + K G + Y L +L G A +L + KRG P + L+
Sbjct: 294 MLEEMVQK----GIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALI 349
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQVT 131
+VD +++ + ++ +SGI PS++ + ++ + K R +A ++ + + N T
Sbjct: 182 MVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYT 241
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+I G + N + +FD++ +G Y+ L+ L G E A +L+E
Sbjct: 242 S-LILGHCRNH-NLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMV 299
Query: 192 KRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
++G+ P ++ +++ + + + G + L KM
Sbjct: 300 QKGIEPTVY-----TYTIPLVSLCDAGCSSEAVELLGKM 333
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + +L + E+G+A FN ++ + Q G +A +ME V PN T
Sbjct: 371 GNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTY 430
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C ++E+++ +++ G+LP+V Y L+ Y +S +D + +L+EM
Sbjct: 431 NSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEK 490
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ G +I D +N E + + G + YN L++ G +
Sbjct: 491 KGLKPNVISYGCLINCLCKD-ANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLK 549
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R DE R + P L +N L+
Sbjct: 550 DAFRFFDEMVAREIVPTLVTYNILI 574
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 11/197 (5%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + GV + S N +E+ R+E+ ++ + E+ + P++ + G
Sbjct: 138 MKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGD 197
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIH 128
+ + E +K G+ P V Y +++ K R DA L DEM NRI+
Sbjct: 198 LKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNT 257
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ G G+ ++ N + +++ E + +N+LL L + E A RVL+
Sbjct: 258 LIDGYCKVGQLEEAFNIR------ERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLE 311
Query: 189 EATKRGLFPELFRHNKL 205
E G P+ F + L
Sbjct: 312 EMEVYGFVPDRFTYTTL 328
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 15/203 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K +++ M GV+ +N VI + R ++A K + EM R PN T
Sbjct: 196 GDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITY 255
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC G ++E+ + +K + P+++ + LL ++ ++A +L+EM
Sbjct: 256 NTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEV 315
Query: 122 -----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNA--LLEAL 174
+R + G + G D ++ + E K G+ + Y LL AL
Sbjct: 316 YGFVPDRFTYTTLFDGHLKCGNVD--ASITLSEEAVRK------GVQILDYTCSILLNAL 367
Query: 175 WCLGLRERAARVLDEATKRGLFP 197
G E+A VL + + GL P
Sbjct: 368 CKEGNMEKAEEVLKKFLENGLAP 390
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 82/204 (40%), Gaps = 2/204 (0%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ C IL M + G+ N S+ +I + EA +M PN +
Sbjct: 477 LFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYN 536
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ C AG + ++ F E+ + I+P+++ Y +L+ K + +A L E+
Sbjct: 537 MLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRK 596
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+S +I G + N Q +++ + G + Y+ L+ GL
Sbjct: 597 GLSFDVITYNSLISG-YSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLV-L 654
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
++ E + L P+ +N L+
Sbjct: 655 VEKIYQEMLQMNLVPDRVIYNALI 678
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ +LS+ + +V ES E + +K G+LPSV + L + R++D L E+
Sbjct: 116 DMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVE 175
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + G+ I+ + +E + + G G+ YN ++ L +
Sbjct: 176 SGLRPDQFMYGKAIQAAVKLGDLKRAIE-LMTCMKRGGVSPGVFVYNVVIGGLCKEKRMK 234
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++ DE R + P +N L+
Sbjct: 235 DAEKLFDEMLDRRVAPNRITYNTLI 259
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 93/240 (38%), Gaps = 36/240 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN---- 57
G +E I RM V +FN+++ + EEA + EME P+
Sbjct: 266 GQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTY 325
Query: 58 -------------------------------ERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
+ T +L+ C G +++++E ++
Sbjct: 326 TTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLE 385
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
+G+ P + + ++ Y + + AY +++M + H ++K +F + N +
Sbjct: 386 NGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVK-KFCEMKNME 444
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
E K+ +G + YN L++ L +R ++L+E K+GL P + + L+
Sbjct: 445 EAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLI 504
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 2/170 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + S ++ G++ + ++N++I + G ++A++ Y M+K P T
Sbjct: 581 GKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTY 640
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ GLV K +QE+ ++P + Y L+ Y + A L M
Sbjct: 641 HRLIAGCGKEGLVLVEK-IYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEA 699
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
I +I G F E V+ + + + G Y+ L+
Sbjct: 700 QGIQPDKMTYNCLILGHF-KEGRMHKVKNLVNDMKIRGLIPKTETYDILI 748
>gi|242061542|ref|XP_002452060.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
gi|241931891|gb|EES05036.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
Length = 674
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 94/198 (47%), Gaps = 8/198 (4%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L ++ VA ++ ++N V++ ++EEA + EM + C PNE T + +C
Sbjct: 207 LRLIASMPVAPDTYTYNTVLKGLCFAKQWEEAEELMREMIRNNCHPNEVTFATQIRAFCQ 266
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--HTNRISNIH 128
GL+D + E +++ G +P V+ Y L+ +++ R DDA LL M N +
Sbjct: 267 NGLLDRAVELLEQMPKYGCMPDVVIYSTLVNGFSEHGRVDDALKLLSTMLCRPNTVCYNA 326
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ G I G + DE + E V + +C ++ L+ +L L E A VL+
Sbjct: 327 ALKGLCIAGRW-DEVGELIAEMV--RKDCPPNDAT---FSTLINSLCQNRLAEYAIEVLE 380
Query: 189 EATKRGLFPELFRHNKLV 206
+ K G P++ +N ++
Sbjct: 381 QMQKYGYMPDVVSYNTII 398
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 39/197 (19%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++++M + N +FN +I++ Q G+ ++AI+ + M K RC P+ T ++++ +
Sbjct: 445 LMAKMLKEDCHTNEMTFNILIDSLCQNGQVKDAIEMFELMPKYRCTPDIVTYSSLINGFS 504
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL K F +S + Y L + RWDDA L+ +M
Sbjct: 505 EQGL---DKVAFDLFRSMPCRADIFSYNATLKGLCMAARWDDAGELIADM---------- 551
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT + E +N L+ +L GL RA V ++
Sbjct: 552 VTKDCLPNEVT--------------------------FNILINSLCQKGLVNRAIEVYEQ 585
Query: 190 ATKRGLFPELFRHNKLV 206
K G+ P++F +N L+
Sbjct: 586 MPKYGITPDIFTYNALI 602
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+NA ++ R+++A + +M C PNE T +++ C GLV+ + E ++++
Sbjct: 527 SYNATLKGLCMAARWDDAGELIADMVTKDCLPNEVTFNILINSLCQKGLVNRAIEVYEQM 586
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
GI P + Y L+ Y++ DDA L M
Sbjct: 587 PKYGITPDIFTYNALINGYSEQGCLDDALKFLSTM 621
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 52/98 (53%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N+ +NA ++ GR++E + EM + C PN+ T +++ C L + + E
Sbjct: 320 NTVCYNAALKGLCIAGRWDEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLAEYAIEVL 379
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++++ G +P V+ Y +++ +++ DDA LL+ M
Sbjct: 380 EQMQKYGYMPDVVSYNTIISCFSEQACADDALKLLNSM 417
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++E + ++ M + N +F I AF Q G + A++ +M K C P+
Sbjct: 235 WEEAEELMREMIRNNCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCMPDVVIYST 294
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ + G VD++ + + + P+ +CY L + RWD+ L+ EM
Sbjct: 295 LVNGFSEHGRVDDA---LKLLSTMLCRPNTVCYNAALKGLCIAGRWDEVGELIAEM 347
>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 95/232 (40%), Gaps = 34/232 (14%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L +M E+G N ++NA+I+ R EEA++ ME+ PN T +
Sbjct: 379 GVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGL 438
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +D +KE F E + G+ P+ + Y LL Y + +R +A +L EMH N + H
Sbjct: 439 CKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDH 498
Query: 129 QVTGQMIKG-----------EFDDESNWQMVEYVFDKLNCEGYGLGMR--------FYNA 169
+I+G DE + + FD LN GL FY
Sbjct: 499 VTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRR 558
Query: 170 LLE------------ALWCL---GLRERAARVLDEATKRGLFPELFRHNKLV 206
+ + A+ CL G E A +L E +G P L +N ++
Sbjct: 559 MKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMI 610
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 95/209 (45%), Gaps = 3/209 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN--ERT 60
++ E Q++L +M G ++ + ++ + GRF+E+++A+ M+++ +P +
Sbjct: 231 MFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTA 290
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+VL +D ++ F ++ ++G+ + + Y ++ + + +DA LLD+M
Sbjct: 291 YNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMI 350
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + VT ++ + V K+ G + YNAL++ L +
Sbjct: 351 QNNYA-PDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRP 409
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSV 209
E A ++ + G+ P ++ + L +
Sbjct: 410 EEALELVTLMEQGGVPPNIYTYTILTHGL 438
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +K+ RM + G A ++ + I G EEA EM PN T
Sbjct: 547 GNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTY 606
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
++ +C G +D++ + +GI P Y +L+ + R DA
Sbjct: 607 NTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDA 657
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 11/195 (5%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E IL M ++ + ++ +I+ QG + +A++ + EME D N TL +
Sbjct: 481 EAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILA 540
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
G ++ ++ +K G S Y + + + + ++A LL EM S
Sbjct: 541 RGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYS 600
Query: 126 NIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
MIK G DD M+ ++ + G G YN L++ G
Sbjct: 601 PNLTTYNTMIKGFCRQGRLDDAD--AMLNFMIEN----GIGPDTGSYNILIKEFHNQGRT 654
Query: 181 ERAARVLDEATKRGL 195
+ A ++ A +RG+
Sbjct: 655 QDADQLYATALERGV 669
>gi|240255936|ref|NP_193372.6| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|374095491|sp|Q8GWE0.3|PP314_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16390, chloroplastic; AltName: Full=Chloroplastic
RNA-binding protein P67; Flags: Precursor
gi|332658341|gb|AEE83741.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 702
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 112/268 (41%), Gaps = 33/268 (12%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSV 67
AI M E G++ +N ++ +EA + + +M+ CDP+ T ++++V
Sbjct: 371 AIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITV 430
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
Y +G V E++ +++ +G P++ ++ Y K+ + DD D++ I+
Sbjct: 431 YACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPD 490
Query: 128 HQVTGQMIKGEFDDESN----------------WQMVEYVFDKLNCE------------- 158
+ G ++ S Q+V+ + ++ NCE
Sbjct: 491 DRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELID 550
Query: 159 --GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
G + + N L++ L ERA +L + ++ L + WS+ + +
Sbjct: 551 SIGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSL 610
Query: 217 GGAYTAISVWLNKMYEMFM-MGEDLPQL 243
G A TA+ VW+N + E + GE+ P L
Sbjct: 611 GAALTALHVWMNDLSEAALESGEEFPPL 638
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 87/202 (43%), Gaps = 1/202 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ + + M E G+ ++ +F +I RQ G + A++ + +M C+P+ T+ A+
Sbjct: 192 EKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAM 251
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ Y AG VD + + ++ + + L+ +Y S +D + +EM +
Sbjct: 252 IDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGV 311
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ ++I + WQ + ++ L G+ Y AL+ A + A
Sbjct: 312 KPNLVIYNRLIDSMGRAKRPWQ-AKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDAL 370
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ E ++GL + +N L+
Sbjct: 371 AIYREMKEKGLSLTVILYNTLL 392
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y C I M GV N +N +I++ + R +A Y ++ PN T
Sbjct: 293 SGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWST 352
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ Y A D++ ++E+K G+ +V+ Y LL++ A + D+A+ + +M
Sbjct: 353 YAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDM 411
>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Glycine max]
Length = 583
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 5/207 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
++ C+ + R+ + G + +S N ++ A +G E Y EM K R PN T
Sbjct: 146 IHSACE-VFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFN 204
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY---GLLDEM 119
++ C AG ++++++ ++IK+ G P+++ Y L+ + K Y +L EM
Sbjct: 205 IFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEM 264
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
N+I +I G DE N + F+++ +G + YN+L+ L G
Sbjct: 265 LANKICPNEITFNTLIDGFCKDE-NVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGK 323
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A + D+ GL P + N L+
Sbjct: 324 LDEAIALWDKMVGLGLKPNIVTFNALI 350
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 6/216 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ KE + + ++E + N+ +FN +I+AF + G EE + M PN T
Sbjct: 358 MIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYN 417
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ C V +K+ E+++ + V+ Y +L+ + K A LL EM
Sbjct: 418 CLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNV 477
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ H ++ G + E N + V ++ EG + YN L++ G E
Sbjct: 478 GVKPNHVTYNTLMDG-YCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLED 536
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A R+L+E ++GL P N+ + V M E G
Sbjct: 537 ANRLLNEMLEKGLNP-----NRTTYDVVRLEMLEKG 567
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 92/196 (46%), Gaps = 7/196 (3%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ N ++N++I G+ +EAI + +M + PN T A+++ +C +
Sbjct: 299 MQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKM 358
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E+++ F +I ++P+ + + ++ + K+ ++ + L + M I
Sbjct: 359 IKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNC 418
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGL--GMRFYNALLEALWCL-GLRERAARVLDEA 190
+I G ++ N + + + +++ E Y L + YN L+ WC G +A ++L E
Sbjct: 419 LIAGLCRNQ-NVRAAKKLLNEM--ENYELKADVVTYNILIGG-WCKDGEPSKAEKLLGEM 474
Query: 191 TKRGLFPELFRHNKLV 206
G+ P +N L+
Sbjct: 475 LNVGVKPNHVTYNTLM 490
>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
Length = 808
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 103/228 (45%), Gaps = 9/228 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + I+ M ++G N +FN+++E + G EEA M + +PN
Sbjct: 466 GRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIY 525
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
++ YC G +D++ F+++ G+ P+ + Y ++L ++ R A + EM
Sbjct: 526 GTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIE 585
Query: 121 TNRISNIHQ---VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ +IH V G + + DE+N + +KL + +N ++ A++ +
Sbjct: 586 SGTTVSIHTYGVVLGGLCRNNCTDEANM-----LLEKLFAMNVKFDIITFNIVISAMFKV 640
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
G R+ A + D + GL P + ++ ++ ++ +E ISV
Sbjct: 641 GRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISV 688
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 98/206 (47%), Gaps = 3/206 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ ++I+ +M +SG+A + +++ +I+ + ++A + +M + PN T +++
Sbjct: 187 KAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLI 246
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSV-MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
Y +G+ +ES F+++ S G++P+V C + A++ K R ++A + D M
Sbjct: 247 HGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALF-KHGRTNEAKCIFDSMVLKGP 305
Query: 125 SNIHQVTGQMIKG-EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
M+ G +S V +F+ + +G +N L+ A G+ ++A
Sbjct: 306 KPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKA 365
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSV 209
+ ++ +G+ P+ ++ S+
Sbjct: 366 MLIFEDMQNKGMIPDTVTFATVISSL 391
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ I + M G+A N FN +I A+ + G ++A+ + +M+ P+ T V+
Sbjct: 329 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 388
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S C G +D++ +F + G+ PS Y L+ A L+ EM I
Sbjct: 389 SSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIP 448
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
I E + + D + G + +N+L+E +G E A
Sbjct: 449 PPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 508
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+LD G+ P + + LV
Sbjct: 509 LLDAMASIGIEPNCYIYGTLV 529
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/233 (19%), Positives = 95/233 (40%), Gaps = 9/233 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + I M G+ ++ +F VI + + GR ++A+ + M + P+E
Sbjct: 360 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 419
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
++ C G + ++KE E+ + I P V + ++ K R + ++D M
Sbjct: 420 GCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV 479
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
T + N+ VT + + N + + D + G Y L++ G
Sbjct: 480 QTGQRPNV--VTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGR 537
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ A V + +G+ P +++S+ +H +++ TA ++M E
Sbjct: 538 IDDALTVFRDMLHKGVKP-----TSVLYSIILHGLFQARRTTAAKKMFHEMIE 585
>gi|15219046|ref|NP_175671.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207557|sp|Q9SSR4.1|PPR77_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g52620
gi|5903044|gb|AAD55603.1|AC008016_13 Contains 3 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332194709|gb|AEE32830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 104/212 (49%), Gaps = 16/212 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E A ++RM+E + + +++ +I+ + + AIK + MEK +C PN T
Sbjct: 534 GMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTY 593
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK-SNRWDDAYGLLDEMH 120
++++ +C G ++E F+E++ ++P+V+ Y L+ AK S+ + A + M
Sbjct: 594 TSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMM 653
Query: 121 TNR-ISN-----------IHQVTGQMIKGEFDDESNWQ--MVEYVFDKLNCEGYGLGMRF 166
TN+ + N + + +G+++ E D ++ Q + F ++ +G+
Sbjct: 654 TNKCVPNEVTFNCLLQGFVKKTSGKVL-AEPDGSNHGQSSLFSEFFHRMKSDGWSDHAAA 712
Query: 167 YNALLEALWCLGLRERAARVLDEATKRGLFPE 198
YN+ L L G+ + A D+ K+G P+
Sbjct: 713 YNSALVCLCVHGMVKTACMFQDKMVKKGFSPD 744
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 17/205 (8%)
Query: 10 ILSRMSESGVARNSDSFNAVIEA-FRQGGRFE--EAIKAYVEMEKVRCDPNERTLEAVLS 66
+LS + E G+ + N +I+A +R G + + E+I + + C P+ T +++
Sbjct: 297 LLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIAND---CKPDVATYNILIN 353
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HT 121
C G + + E G++P+ + Y L+ Y KS +D A LL +M
Sbjct: 354 RLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKP 413
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ ++ + G ++ G DD N ++ KL G YN L+ L G
Sbjct: 414 DIVTYGILIHGLVVSGHMDDAVNMKV------KLIDRGVSPDAAIYNMLMSGLCKTGRFL 467
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + E R + P+ + + L+
Sbjct: 468 PAKLLFSEMLDRNILPDAYVYATLI 492
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 83/240 (34%), Gaps = 34/240 (14%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y +L +M+E G + ++ +I G ++A+ V++ P+
Sbjct: 396 YDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNM 455
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----------- 112
++S C G +K F E+ ILP Y L+ + +S +D+A
Sbjct: 456 LMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKG 515
Query: 113 -----------------YGLLDEMHT--NRISNIHQVTGQMIKGEFDD----ESNWQMVE 149
G+LDE NR++ H V + D + +
Sbjct: 516 VKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAI 575
Query: 150 YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
+F + + Y +L+ C G + A E R L P + + L+ S+
Sbjct: 576 KIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSL 635
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 90/199 (45%), Gaps = 1/199 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ RM + G NS +++ +I GR EEA+ EM + +P T L
Sbjct: 258 AMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSL 317
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C AG E+ E ++K G +P++ + L++ ++ +++ A GL +M + +
Sbjct: 318 CDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPT- 376
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT + + E ++ +F + G + YN +++ +G ++A + D
Sbjct: 377 TVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFD 436
Query: 189 EATKRGLFPELFRHNKLVW 207
+ K G P + +N L++
Sbjct: 437 KMLKAGSSPNVITYNTLIY 455
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 36/200 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G+ ++ ++ +I F +GG+ E A + M + PN T A++ Y
Sbjct: 469 LLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYF 528
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
VD++ F ++ SG LPS Y ++++ ++K TN IS
Sbjct: 529 NLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK---------------TNSISEAEN 573
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
G+M+K +G + Y + ++ L G A ++ E
Sbjct: 574 FCGKMVK---------------------QGLLPNVITYTSFIDGLCRNGRTGLAFKIFHE 612
Query: 190 ATKRGLFPELFRHNKLVWSV 209
KR FP L+ ++ L++ +
Sbjct: 613 MEKRNYFPNLYTYSSLIYGL 632
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + I+S + N+ ++ ++I + + A + M K CDPN T
Sbjct: 216 GRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTY 275
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G ++E+ + +E+ GI P+V Y + L + +A LL +M
Sbjct: 276 STLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKK 335
Query: 122 NR-ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ NI T +I G + +++ ++ K+ +G YNAL+ L G
Sbjct: 336 RGCVPNIQTFTA-LISG-LSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRF 393
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E A + G P +N+++
Sbjct: 394 ETAFTIFKWMLSHGSLPSTQTYNEII 419
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L M + G+ ++ + + G EA++ +M+K C PN +T
Sbjct: 286 GRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTF 345
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++S G + + + ++ + G++P+ + Y L+ R++ A+ + M +
Sbjct: 346 TALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLS 405
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ Q ++IK F + Q +FDK+ G + YN L+ G
Sbjct: 406 HGSLPSTQTYNEIIKC-FCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLN 464
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+L+ GL P+ + + +L+
Sbjct: 465 NAMRLLEIMKGNGLKPDAWTYTELI 489
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 1/194 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M G+ + ++NA+I GRFE A + M P+ +T ++ +C G
Sbjct: 367 KMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMG 426
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ ++ F ++ +G P+V+ Y L+ Y K ++A LL+ M N +
Sbjct: 427 DIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYT 486
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++I G F + +F + G Y A+++ + L + A + + +
Sbjct: 487 ELISG-FSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVE 545
Query: 193 RGLFPELFRHNKLV 206
G P +N ++
Sbjct: 546 SGNLPSSQTYNVMI 559
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 94/208 (45%), Gaps = 11/208 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + ++ M E G++ N ++ A+I+ + + ++A+ + +M + P+ +T
Sbjct: 495 GGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQT 554
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S + + E++ ++ G+LP+V+ Y + ++ R A+ + EM
Sbjct: 555 YNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEME 614
Query: 121 T-NRISNIHQ----VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
N N++ + G +G +D + ++ +L G + Y L++ L
Sbjct: 615 KRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLA----RLTHYGCEPNVDTYTTLVKGLC 670
Query: 176 CLGLRERAARVLDEATKRGLFP--ELFR 201
G A +++ K+GL P E++R
Sbjct: 671 GEGRCYEADQLVVSMQKKGLQPSEEIYR 698
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 7/215 (3%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M SG+ + +FN +I + GR +EA + + PN T +++ +C
Sbjct: 192 KMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNH 251
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVT 131
+D + F + G P+ + Y L+ R ++A +L+EM I ++ T
Sbjct: 252 NLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYT 311
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
++ D + + VE + K+ G ++ + AL+ L G E A + +
Sbjct: 312 IPLV-SLCDAGCSSEAVE-LLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKML 369
Query: 192 KRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
GL P +N L+ + V EG TA +++
Sbjct: 370 ADGLVPTTVTYNALINQLCV----EGRFETAFTIF 400
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 14/180 (7%)
Query: 35 QGGRFEE---AIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP 91
Q G+F+ A Y++M P+ T ++++ C G V E+K I P
Sbjct: 176 QLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYP 235
Query: 92 SVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGEFDDESNWQ 146
+ Y L+ + +++ D A+ + D M N ++ + G +G E
Sbjct: 236 NAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRL--EEAMD 293
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
M+E + K G + Y L +L G A +L + KRG P + L+
Sbjct: 294 MLEEMVQK----GIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALI 349
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQVT 131
+VD +++ + ++ +SGI PS++ + ++ + K R +A ++ + + N T
Sbjct: 182 MVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYT 241
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+I G + N + +FD++ +G Y+ L+ L G E A +L+E
Sbjct: 242 S-LILGHCRNH-NLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMV 299
Query: 192 KRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
++G+ P ++ +++ + + + G + L KM
Sbjct: 300 QKGIEPTVY-----TYTIPLVSLCDAGCSSEAVELLGKM 333
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM E GVA ++N ++ A GR EA + EM P+ T +++ +C G
Sbjct: 169 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 228
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE----------MHTN 122
V ++ E F+ + G+ +V+ Y L+ +K + + L DE + N
Sbjct: 229 NVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 288
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ N H +G I F+ + D + YN L+ L LG +
Sbjct: 289 ALINSHSTSGN-IDRAFEIMGEMEKKRIAPDDVT----------YNTLMRGLCLLGRVDE 337
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A +++DE TKRG+ P+L +N L+
Sbjct: 338 ARKLIDEMTKRGIQPDLVTYNTLI 361
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 6/206 (2%)
Query: 8 QAILSRMSE----SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLE 62
QA L M E G+A N ++ VI + + GR +EA+K + EM K P
Sbjct: 89 QAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYN 148
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
A++ YC G +D + + G+ +V Y +L+ R +AY L++EM
Sbjct: 149 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 208
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
++ +I G E N + +F+ ++ G + Y +L+ AL G +
Sbjct: 209 GLAPDVFTYNILINGHC-KEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQE 267
Query: 183 AARVLDEATKRGLFPELFRHNKLVWS 208
++ DEA +RG+ P+L +N L+ S
Sbjct: 268 TDKLFDEAVRRGIRPDLVLYNALINS 293
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 5/185 (2%)
Query: 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ +FN ++ G+ A++ +M + PN T V++ +C G V + + +
Sbjct: 41 TTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMR 96
Query: 83 EIKS-SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
E++ GI P+ Y +++ + K R D+A + DEM T V + G + D
Sbjct: 97 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 156
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+ D++ G + + YN L+ AL+ G A +++E +GL P++F
Sbjct: 157 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 216
Query: 202 HNKLV 206
+N L+
Sbjct: 217 YNILI 221
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 7/155 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + G+ + +NA+I + G + A + EMEK R P++ T
Sbjct: 263 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 322
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G VDE+++ E+ GI P ++ Y L++ Y+ DA + +EM
Sbjct: 323 NTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMN 382
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNW--QMVE 149
+ +I+ G+ DD N +MVE
Sbjct: 383 KGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVE 417
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 91/202 (45%), Gaps = 11/202 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ I MS GV ++ ++I A + G+ +E K + E + P+
Sbjct: 228 GNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLY 287
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
A+++ + +G +D + E E++ I P + Y L+ R D+A L+DEM
Sbjct: 288 NALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTK 347
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ ++ ++G +KG+ D + +++ +G+ + YNAL++ L
Sbjct: 348 RGIQPDLVTYNTLISGYSMKGDVKDALRIR------NEMMNKGFNPTLLTYNALIQGLCK 401
Query: 177 LGLRERAARVLDEATKRGLFPE 198
G + A ++ E + G+ P+
Sbjct: 402 NGQGDDAENMVKEMVENGITPD 423
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I+ M + +A + ++N ++ GR +EA K EM K P+ T ++S Y
Sbjct: 306 IMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYS 365
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G V ++ E+ + G P+++ Y L+ K+ + DDA ++ EM N I+
Sbjct: 366 MKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 425
Query: 130 VTGQMIKG 137
+I+G
Sbjct: 426 TYISLIEG 433
>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g42310, mitochondrial; Flags: Precursor
gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 709
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ +L M GV + +N VI+ F + + A+ + M +P+ T
Sbjct: 423 GEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTW 482
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G ++E F+ ++ G LP Y +++ Y RWDD LL +M +
Sbjct: 483 NTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKS 542
Query: 122 NRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I N+ VT + + + +++ G YNAL+ A GL
Sbjct: 543 QGILPNV--VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLS 600
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E+A T GL P L N L+
Sbjct: 601 EQAVNAFRVMTSDGLKPSLLALNSLI 626
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 91/211 (43%), Gaps = 1/211 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +A+ + +SG+ + ++NA+++ + + G ++A EMEK P+E T ++
Sbjct: 322 EAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLI 381
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
Y AG + ++ +E+++ + P+ + LLA + W + +L EM + +
Sbjct: 382 DAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVK 441
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
Q +I F + FD++ EG +N L++ G A
Sbjct: 442 PDRQFYNVVID-TFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEE 500
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ + +RG P +N ++ S W+
Sbjct: 501 MFEAMERRGCLPCATTYNIMINSYGDQERWD 531
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 61/119 (51%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L +M G+ N + +++ + + GRF +AI+ EM+ V P+ A++
Sbjct: 532 DMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALI 591
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ Y GL +++ F+ + S G+ PS++ L+ + + R +A+ +L M N +
Sbjct: 592 NAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGV 650
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 76/215 (35%), Gaps = 36/215 (16%)
Query: 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
N +I F + G +A++ + TL +++S +G E++ F+E++
Sbjct: 273 NDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQ 332
Query: 87 SGILPSVMCYCMLLAVYAKS-----------------------------------NRWDD 111
SGI P Y LL Y K+ RW+
Sbjct: 333 SGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWES 392
Query: 112 AYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
A +L EM + V +++ G F D WQ V ++ G +FYN ++
Sbjct: 393 ARIVLKEMEAGDVQPNSFVFSRLLAG-FRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVI 451
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ + A D G+ P+ N L+
Sbjct: 452 DTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLI 486
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + L M G+ +S +NA+I A+ Q G E+A+ A+ M P+
Sbjct: 562 SGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLA 621
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
L ++++ + E+ Q +K +G+ P V+ Y L+ + +++ + +EM
Sbjct: 622 LNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEM 680
>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
Length = 845
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 103/228 (45%), Gaps = 9/228 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + I+ M ++G N +FN+++E + G EEA M + +PN
Sbjct: 543 GRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIY 602
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
++ YC G +D++ F+++ G+ P+ + Y ++L ++ R A + EM
Sbjct: 603 GTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIE 662
Query: 121 TNRISNIHQ---VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ +IH V G + + DE+N + +KL + +N ++ A++ +
Sbjct: 663 SGTTVSIHTYGVVLGGLCRNNCTDEANM-----LLEKLFAMNVKFDIITFNIVISAMFKV 717
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
G R+ A + D + GL P + ++ ++ ++ +E ISV
Sbjct: 718 GRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISV 765
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/221 (19%), Positives = 101/221 (45%), Gaps = 32/221 (14%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ ++I+ +M +SG+A + +++ +I+ + ++A + +M + PN T +++
Sbjct: 263 KAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLI 322
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSV-MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
Y +G+ +ES F+++ S G++P+V C + A++ K R ++A + D M
Sbjct: 323 HGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALF-KHGRTNEAKCIFDSM----- 376
Query: 125 SNIHQVTGQMIKGEFDD----ESN------------WQMVEYVFDKLNCEGYGLGMRFYN 168
++KG D +N W M +F+ + +G +N
Sbjct: 377 ---------VLKGPKPDIISYSTNASWVCYWYVTVVWVMWHNIFNLMLTKGIAPNKHVFN 427
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
L+ A G+ ++A + ++ +G+ P+ ++ S+
Sbjct: 428 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 468
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 79/197 (40%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I + M G+A N FN +I A+ + G ++A+ + +M+ P+ T V+S C
Sbjct: 410 IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLC 469
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +D++ +F + G+ PS Y L+ A L+ EM I
Sbjct: 470 RIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGV 529
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
I E + + D + G + +N+L+E +G E A +LD
Sbjct: 530 KYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDA 589
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P + + LV
Sbjct: 590 MASIGIEPNCYIYGTLV 606
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/233 (19%), Positives = 95/233 (40%), Gaps = 9/233 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + I M G+ ++ +F VI + + GR ++A+ + M + P+E
Sbjct: 437 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 496
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
++ C G + ++KE E+ + I P V + ++ K R + ++D M
Sbjct: 497 GCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV 556
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
T + N+ VT + + N + + D + G Y L++ G
Sbjct: 557 QTGQRPNV--VTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGR 614
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ A V + +G+ P +++S+ +H +++ TA ++M E
Sbjct: 615 IDDALTVFRDMLHKGVKP-----TSVLYSIILHGLFQARRTTAAKKMFHEMIE 662
>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 402
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 2/188 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M+++G RN S+ +I + + +EA+ V+M+ C PN RT ++ C
Sbjct: 212 VFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALC 271
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G E+ F+++ SGI P Y +L+ + + D+A GLL+ M N +
Sbjct: 272 GSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVI 331
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+IKG + N + K+ + + YN L+ G + A R+L
Sbjct: 332 TYNALIKGFC--KKNVHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSGNLDSAYRLLSL 389
Query: 190 ATKRGLFP 197
+ GL P
Sbjct: 390 MEESGLVP 397
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 14/215 (6%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N ++ + + G EE + Y EM + P+ T +++ YC G V E+K+ +
Sbjct: 123 YNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLI 182
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD----D 141
+G P Y + + + D A+ + EM N Q+I G F+ D
Sbjct: 183 QAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKID 242
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
E+ +V+ D NC +R Y L++AL G + A + + ++ G+ P+
Sbjct: 243 EALSLLVKMKDD--NC---CPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPD--- 294
Query: 202 HNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMM 236
+++V + G S L M E +M
Sbjct: 295 --DCMYTVLIQSFCSGDTLDEASGLLEHMLENGLM 327
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 6/140 (4%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++L +M + N ++ +I+A G+ EA+ + +M + P++ ++
Sbjct: 243 EALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLI 302
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRI 124
+C +DE+ + + +G++P+V+ Y L+ + K N A GLL +M N +
Sbjct: 303 QSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCKKN-VHKAMGLLSKMLEQNLV 361
Query: 125 SNIHQ----VTGQMIKGEFD 140
++ + GQ G D
Sbjct: 362 PDLITYNTLIAGQCSSGNLD 381
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 97/211 (45%), Gaps = 13/211 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVE-MEKVRCDPNERT 60
GL +E + + + M E V+ + +FN ++ + + G EA K YV + + CDP+ T
Sbjct: 134 GLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEA-KQYVTWLIQAGCDPDYFT 192
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ ++ +C VD + + F+E+ +G + + Y L+ ++ + D+A LL +M
Sbjct: 193 YTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMK 252
Query: 121 -TNRISNIHQVTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
N N+ T + G+ + N +F +++ G Y L+++
Sbjct: 253 DDNCCPNVRTYTVLIDALCGSGQKSEAMN------LFKQMSESGIKPDDCMYTVLIQSFC 306
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ A+ +L+ + GL P + +N L+
Sbjct: 307 SGDTLDEASGLLEHMLENGLMPNVITYNALI 337
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + +MSESG+ + + +I++F G +EA M + PN T
Sbjct: 273 SGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVIT 332
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ +C V ++ ++ ++P ++ Y L+A S D AY LL M
Sbjct: 333 YNALIKGFCKKN-VHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSGNLDSAYRLLSLM 390
>gi|413944457|gb|AFW77106.1| hypothetical protein ZEAMMB73_510937 [Zea mays]
Length = 492
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ +++L+ M+ +G+ N+ ++N +I+A+ + GRF E ++M C P+ T+ +
Sbjct: 228 FEKVKSLLADMARAGIPPNTVTYNTLIDAYGKAGRFAEMESTLLKMLSQNCKPDVWTMNS 287
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
L + +G ++ + +++ ++SGI+P++ Y +LL Y K+ ++ +++ M
Sbjct: 288 TLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYY 347
Query: 124 IS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158
S I VT ++ F + + +EY+F + E
Sbjct: 348 YSWTI--VTYNVVIDAFGRAGDLEQMEYIFRLMKSE 381
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 2/176 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSVYCFAG 72
M + G A N S+ A++ + + GRF EA M+ C P+ +T ++ A
Sbjct: 167 MIDEGCAPNLQSYTALVSTYSRSGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCLHAY 226
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++ K ++ +GI P+ + Y L+ Y K+ R+ + L +M +
Sbjct: 227 DFEKVKSLLADMARAGIPPNTVTYNTLIDAYGKAGRFAEMESTLLKMLSQNCKPDVWTMN 286
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ F + +E ++K G ++ YN LL++ + E+ V++
Sbjct: 287 STLRA-FGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVME 341
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+Y++ A++ M + + ++N VI+AF + G E+ + M+ R PN TL
Sbjct: 332 MYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLC 391
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+V+ Y AG V + K + I++S I ++ + L+ Y + + + +LD M +
Sbjct: 392 SVVRAYGRAGEVKKIKTALRIIENSDITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEH 451
Query: 123 RISNIHQVTGQMIK 136
R MIK
Sbjct: 452 RCKPDKVTCTTMIK 465
>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 658
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 90/197 (45%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M S + N FN +I+ + + GR +A++ + +M+K P+ T +++ +C
Sbjct: 346 LLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHC 405
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AGL+ E+ + ++++ +PS+ Y ++L NRW + LLDEM + + +
Sbjct: 406 RAGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGL-DPNV 464
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT + + ++ ++ +G Y AL + GL E+A V
Sbjct: 465 VTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKS 524
Query: 190 ATKRGLFPELFRHNKLV 206
K G+ L N L+
Sbjct: 525 MEKDGVELNLSMLNLLI 541
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 90/211 (42%), Gaps = 1/211 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ +A + M N + NA++ A+ + E+ K + E + + ++
Sbjct: 237 DAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLI 296
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
Y AG +D++K F +K + + Y L+ Y + +WD LL +M+ + I
Sbjct: 297 DAYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIK 356
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+Q ++ + F +++ EG+ + +N+L+EA GL A
Sbjct: 357 P-NQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALD 415
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+L + +R P L +N ++ ++ H W+
Sbjct: 416 LLKQMQERECVPSLHTYNIILNALGWHNRWK 446
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + ++M + G + ++N++IEA + G EA+ +M++ C P+ T
Sbjct: 373 GRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTY 432
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ + E E++ G+ P+V+ Y L+ Y S R+ +A L +M +
Sbjct: 433 NIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKS 492
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ V + Q +E VF + +G L + N L+ A G
Sbjct: 493 QGLQPSTSVYCALANSYAKRGLCEQAME-VFKSMEKDGVELNLSMLNLLINAFGVAGKYV 551
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A V D + G+ P++ + L+
Sbjct: 552 EAFSVFDYILEVGMSPDVVTYTTLM 576
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 3/199 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL E +L +M E + ++N ++ A R++E EM DPN T
Sbjct: 407 AGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVT 466
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y + E+ E +++KS G+ PS YC L YAK + A + M
Sbjct: 467 YTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSME 526
Query: 121 TNRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + N+ + ++ F + VFD + G + Y L++AL
Sbjct: 527 KDGVELNLSML--NLLINAFGVAGKYVEAFSVFDYILEVGMSPDVVTYTTLMKALIKAEQ 584
Query: 180 RERAARVLDEATKRGLFPE 198
++ V ++ + G P+
Sbjct: 585 LDQVPDVYEQMVRAGCTPD 603
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/198 (17%), Positives = 82/198 (41%), Gaps = 3/198 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + +A M V N+ ++ ++ A+R +++ I+ +M PN+
Sbjct: 302 AGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFI 361
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y G + ++ F ++ G P V+ + L+ + ++ +A LL +M
Sbjct: 362 FNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQ 421
Query: 121 TNR-ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ ++H T +I + W+ + + D++ +G + Y L+++
Sbjct: 422 ERECVPSLH--TYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKR 479
Query: 180 RERAARVLDEATKRGLFP 197
A+ L + +GL P
Sbjct: 480 YREASEYLKQMKSQGLQP 497
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 6/211 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAF---RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
++++M SG ++ ++ V +A R G + A +E E + D + V++
Sbjct: 135 LMNQMRGSGFQPDNVNYTLVFQACAKKRVGVDVISRVCANIEQEGLEMD--TKLYNDVIN 192
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
YC AG D++ + +++ ++P V Y L+ R DDA EM + +
Sbjct: 193 AYCRAGDPDKAFQYMGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKS-KSYK 251
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
I+ T + + +S + VE + G L Y L++A G ++A
Sbjct: 252 INLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAA 311
Query: 187 LDEATKRGLFPELFRHNKLVWSVDVHRMWEG 217
+ F +++L+ + R W+G
Sbjct: 312 FHNMKVENVPANAFIYSRLMVAYRNARQWDG 342
>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
Length = 953
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 1/191 (0%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E ++ ++ +N I + G+F EA EM +P++ T ++S C G
Sbjct: 567 ERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTS 626
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
++ + E+K S I P+++ Y L+ ++ + A LL+EM + + +++
Sbjct: 627 KALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVL 686
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ S + ++E V + + G + YN L+ L C G+ +A VLDE RG+
Sbjct: 687 QACSGSRSPYVILE-VHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGI 745
Query: 196 FPELFRHNKLV 206
P+ N L+
Sbjct: 746 APDTITFNALI 756
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 101/229 (44%), Gaps = 6/229 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + +L + N ++ +++A + G + A + ++ME+ PN T
Sbjct: 378 GKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTF 437
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L+ G + ++ +++K SGI P+V+ Y L+ + K + A + +M
Sbjct: 438 SSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLH 497
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + ++ G N + E +F + G L Y L++ L+ G
Sbjct: 498 EGVEANNFIVDSLVNG-LRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMP 556
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
A +V E +R L P+ +V++V ++ + G ++ +L +M
Sbjct: 557 AALKVGQELMERNLSPD-----AVVYNVFINCLCRLGKFSEAKSFLKEM 600
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ RM GV + + +I + + R EEA Y M + P+ TL A++ C
Sbjct: 246 VAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLC 305
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G E+ F+E+ G+ P+ + YC + AK R +++ GLL EM
Sbjct: 306 RDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEM 355
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A ++M G++ N +FN ++ GR EA EM+K+ +PN T + +++ Y
Sbjct: 770 ATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGY 829
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ + E+ S G +P Y L++ +AK+ + A L EM
Sbjct: 830 AKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEM 880
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 10/207 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ RM+ G++ + +N ++ F G + A + M+ +P+ T ++ Y
Sbjct: 210 AVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEY 269
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C ++E+ ++ + SG+LP V+ L+ + R+ +AY L EM ++ H
Sbjct: 270 CKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNH 329
Query: 129 QVTGQMIKGEFDDESNWQMVEY---VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
I D + Q V + ++ G + + Y +++ L G E A
Sbjct: 330 VTYCTFI----DSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKD 385
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVH 212
VL A + P + L VD H
Sbjct: 386 VLRHALSDNITPNCVTYTVL---VDAH 409
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ ++ +L M G+A ++ +FNA+I + + A Y +M PN T
Sbjct: 728 GMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATF 787
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L AG + E+ E+K G+ P+ + Y +L+ YAK + +A L EM
Sbjct: 788 NTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEM 845
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 60/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ M + G+ N+ +++ ++ + + EA++ Y EM P T
Sbjct: 798 GRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTY 857
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++S + AG+++++KE F E+K G+L + Y +LL ++K + LL +M
Sbjct: 858 NSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDM 915
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 83/193 (43%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M SGV + + +A+++ + GRF EA + EM+K+ PN T +
Sbjct: 285 MVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQR 344
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
V+ES E+ S G+ ++ Y ++ K + ++A +L ++ I+ + VT
Sbjct: 345 VNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITP-NCVTYT 403
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ N E + ++ + + ++++L L G +AA + +
Sbjct: 404 VLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDS 463
Query: 194 GLFPELFRHNKLV 206
G+ P + + L+
Sbjct: 464 GIAPNVVTYGTLI 476
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 12/204 (5%)
Query: 9 AILSRMSESGVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
++L M + R N+ ++N +I+ F + G F+ A + + +M + PN TL ++
Sbjct: 378 SLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDG 437
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN- 126
C G V + E F E+K G+ + Y L++ + N + A +EM ++ S
Sbjct: 438 LCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPD 497
Query: 127 ----IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
++G I G +D S V KL G+ L YN L+ ER
Sbjct: 498 AVVYYSLISGLCIAGRMNDAS------VVVSKLKLAGFSLDRSCYNVLISGFCKKKKLER 551
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
+L E + G+ P+ +N L+
Sbjct: 552 VYELLTEMEETGVKPDTITYNTLI 575
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 1/208 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + +M+E GV N + N +++ + GR A++ + EM+ N T
Sbjct: 406 AGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAAT 465
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++S +C ++ + + F+E+ SSG P + Y L++ + R +DA ++ ++
Sbjct: 466 YTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLK 525
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
S +I G F + + V + ++ G YN L+ L G
Sbjct: 526 LAGFSLDRSCYNVLISG-FCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDF 584
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWS 208
A++V+++ K GL P + + ++ +
Sbjct: 585 ATASKVMEKMIKEGLRPSVVTYGAIIHA 612
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M E+GV ++ ++N +I + G F A K +M K P+ T A++ YC
Sbjct: 555 LLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYC 614
Query: 70 FAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
VDE + F E+ +S + P+ + Y +L+ ++N D A L+++M R+
Sbjct: 615 SKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNT 674
Query: 129 QVTGQMIKGEFDDE 142
++KG D +
Sbjct: 675 TTYNAILKGVRDKK 688
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 6/184 (3%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G A ++ S NA++ +G + + EMEK + P+ T +++ C A +DE+
Sbjct: 276 GGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEA 335
Query: 78 KEQFQEIKSSG------ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131
+ F ++ G + P V+ + L+ K + +D LL+EM I+ + VT
Sbjct: 336 LQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVT 395
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+ F N+ +F ++N EG + N L++ L G RA +E
Sbjct: 396 YNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMK 455
Query: 192 KRGL 195
+GL
Sbjct: 456 GKGL 459
>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 905
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 97/200 (48%), Gaps = 4/200 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E A+ RM + G + N+ ++NA+I A+ + G+ ++ ++ + EM C+ + T
Sbjct: 329 GQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITY 388
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++S AG + + E F E+ G +P+ + Y L+ A+ +W+ A + ++M
Sbjct: 389 SSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQK 448
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL-- 179
+ VT + ++ W+ ++++ + +NA+++ LW G+
Sbjct: 449 GGCTP-DVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWETGVIW 507
Query: 180 -RERAARVLDEATKRGLFPE 198
+ +A + +A + G F +
Sbjct: 508 AQRKALALFQQAVEDGHFKQ 527
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 8/218 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+++ +L+ M GV ++N +I A G+ EA+ Y M PN T
Sbjct: 294 GLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTY 353
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++S Y AG +D+ E FQE+ G SV+ Y L++ K+ +W+ A L +EM
Sbjct: 354 NALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELALELFNEMAG 413
Query: 122 NR-ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I N VT + + W+ VF+++ G + + AL+ + G
Sbjct: 414 EGCIPNT--VTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQW 471
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
RA ++ + P+ +V++ + +WE G
Sbjct: 472 RRALGAYEQMRLQRCKPD-----AIVFNAIIDTLWETG 504
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 3/178 (1%)
Query: 40 EEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99
+ A+ EM + N T A+++V G + + + ++ G P+V+ Y L
Sbjct: 227 DRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNTL 286
Query: 100 LAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG-EFDDESNWQMVEYVFDKLNCE 158
+ VY K W+ +L M T + + + +I + M V+ ++ E
Sbjct: 287 IDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAMA--VYKRMLDE 344
Query: 159 GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
GY YNAL+ A G ++ V E +G + ++ L+ + + WE
Sbjct: 345 GYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWE 402
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 11/203 (5%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
+ RN ++ A++ + G A+ Y M + PN T ++ VY GL ++
Sbjct: 241 IERNVHTYTALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNTLIDVYGKMGLWEQGI 300
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG----LLDEMHTNRISNIHQVTGQM 134
+ +K+ G+ P + Y L+ + +A +LDE ++ + + +
Sbjct: 301 KVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAY 360
Query: 135 IK-GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
K G+ D V VF ++ +G + Y++L+ A G E A + +E
Sbjct: 361 GKAGQLDK------VMEVFQEMVHKGCERSVITYSSLISACEKAGQWELALELFNEMAGE 414
Query: 194 GLFPELFRHNKLVWSVDVHRMWE 216
G P +N L+ + WE
Sbjct: 415 GCIPNTVTYNSLITACAQGAQWE 437
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 38/74 (51%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +++ + +M + G + +F A+I ++ +GG++ A+ AY +M RC P+
Sbjct: 433 GAQWEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIV 492
Query: 61 LEAVLSVYCFAGLV 74
A++ G++
Sbjct: 493 FNAIIDTLWETGVI 506
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 97/205 (47%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ I+ + +SG + ++N +I GR+ +A K +M + C P+ T
Sbjct: 133 GKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTF 192
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C GL+ + + +++ G P+ + Y LL + K + + A L +M T
Sbjct: 193 NILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKM-T 251
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+R VT + + + ++L+ +G + YN +++ L +G +
Sbjct: 252 SRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTD 311
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+AA++LDE +GL P++ ++ LV
Sbjct: 312 QAAKLLDEMRAKGLKPDIITYSSLV 336
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 1/196 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +L +M + G NS S+N ++ F + + E AI+ +M C P+ T
Sbjct: 203 GLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTY 262
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ C G VD + E ++ S G P ++ Y ++ +K + D A LLDEM
Sbjct: 263 NTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRA 322
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +T + G E F L G YNA++ L +
Sbjct: 323 KGLKP-DIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTD 381
Query: 182 RAARVLDEATKRGLFP 197
RA L +RG P
Sbjct: 382 RAIDFLAYMVQRGCKP 397
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 3/184 (1%)
Query: 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCD-PNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
N + + G EE + ++E R D P+ +++ +C G ++ + I+
Sbjct: 88 NNNLSKLVRNGELEEGFR-FLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIE 146
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
SG +P V+ Y +L++ + RW DA LL +M R + VT ++ +
Sbjct: 147 DSGAVPDVITYNVLISGMCSTGRWMDAEKLLADM-VRRGCSPSVVTFNILINFLCRKGLL 205
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
V +K+ G YN LL ERA L + T RG +P++ +N L
Sbjct: 206 GRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTL 265
Query: 206 VWSV 209
+ ++
Sbjct: 266 LTAL 269
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 54/118 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +L M G+ + ++++++ + G+ +EAIK + ++E + PN T
Sbjct: 308 GKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITY 367
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ C A D + + + G P+ Y +L+ A +A LL+E+
Sbjct: 368 NAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNEL 425
>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
Length = 1091
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 35/240 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL + L M E+G++ N+ ++N +I + G EA++ Y M + P+ RT
Sbjct: 150 GGL-RSAPVALPVMREAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRT 208
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
++ + VD E+++ G+ P+V Y + + V ++ R+D+AY +L +M
Sbjct: 209 YSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKME 268
Query: 120 ----------HT---------NRISNIH--------------QVTGQMIKGEFDDESNWQ 146
HT R+S+ +VT + + D + Q
Sbjct: 269 DSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQ 328
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V V++ + +GY + Y A+++AL +G + A V DE ++G+ PE + +N L+
Sbjct: 329 SVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLI 388
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 104/240 (43%), Gaps = 20/240 (8%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + M+ G + N + I + + G+ +AI+ Y M+ P+ AVL
Sbjct: 403 LFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLA 462
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RIS 125
+G + +K F E+K+ G+ P + Y M++ +K+++ D+A +M + +
Sbjct: 463 GSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVL 522
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
++ + + KG +E+ WQ+ F KL YN LL L G + +
Sbjct: 523 ALNSLIDTLYKGGKGNEA-WQL----FHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQ 577
Query: 186 VLDEATKRGLFPELFRHNKLV----------WSVD-VHRMWEGGAYTAISVWLNKMYEMF 234
+L+E T+ P L +N ++ ++D ++ M E G +S + MY +
Sbjct: 578 LLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLI 637
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 94/231 (40%), Gaps = 34/231 (14%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + M G + ++N +++A + R EE +K EM + + T ++S
Sbjct: 788 LFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLV 847
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-------- 121
+ ++++ + + + S G P+ Y LL KS + DA L +EM
Sbjct: 848 KSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCT 907
Query: 122 --NRISNIHQVTG------QMIKGEFDDESNWQMVEY--VFDKLNCEG------------ 159
N + N H++ G Q+ + + N + Y + D L G
Sbjct: 908 IYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQL 967
Query: 160 YGLGMR----FYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ LG+ YN L++ L E A + +E K+G+ P L+ +N L+
Sbjct: 968 HELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLI 1018
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 87/220 (39%), Gaps = 6/220 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G N S+ AV++A Q GR +EA+ + EM++ P + + +++S + A +
Sbjct: 337 MVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADM 396
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
D + E F + + G P+ + + + Y KS + A + M + I
Sbjct: 397 FDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVP-DVAAAN 455
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ M + VF +L G Y +++ + A + +
Sbjct: 456 AVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVES 515
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
G P++ N L+ + +++GG +K+ EM
Sbjct: 516 GCVPDVLALNSLIDT-----LYKGGKGNEAWQLFHKLKEM 550
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 87/235 (37%), Gaps = 36/235 (15%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M GV N S+ I Q RF+EA +ME C P+ T ++ V C
Sbjct: 228 LLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLC 287
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN---------------------- 107
AG + ++K F ++K+S P + Y LL S
Sbjct: 288 DAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIV 347
Query: 108 -------------RWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
R D+A + DEM +S +I G + + +E +F+
Sbjct: 348 SYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALE-LFNH 406
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
+N G + + G +A + + +G+ P++ N +++S+
Sbjct: 407 MNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSL 461
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 95/218 (43%), Gaps = 6/218 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + ++ GV+ + S+N++I + A + EM+++ C P+E T +L
Sbjct: 749 EAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLIL 808
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ V+E + +E+ G + + Y +++ KS R + A L + + S
Sbjct: 809 DAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFS 868
Query: 126 NIHQVTGQMIKGEFDDESNWQMV--EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
G ++ G + +MV E +F+++ G YN LL G E
Sbjct: 869 PTPCTYGPLLDGLL---KSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENV 925
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSV-DVHRMWEGGAY 220
++ ++ ++G+ P++ + L+ ++ R+ +G Y
Sbjct: 926 CQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCY 963
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 102/261 (39%), Gaps = 42/261 (16%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M+E G A + S+N V+ + R EEA + + +M+K+ P+ TL +L +
Sbjct: 613 MLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKKILA-PDYATLCTILPSFV 671
Query: 70 FAGLVDESKEQFQE------------------------------------IKSSGILPSV 93
GL+ E+ +E I S GIL +
Sbjct: 672 KNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGVEKSIEFAENIASRGILLND 731
Query: 94 MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD 153
C L+ K + +A+ L ++ +S +I+G DE+ + E +F
Sbjct: 732 FFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRG-LVDENLIDIAEDLFT 790
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHR 213
++ G G YN +L+A+ E +V E ++G +N ++ + +
Sbjct: 791 EMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSK 850
Query: 214 MWEGGAYTAISVWLNKMYEMF 234
E AI ++ N M E F
Sbjct: 851 RLE----QAIDLYYNLMSEGF 867
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 56/114 (49%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E S M ESG + + N++I+ +GG+ EA + + ++++++ +P T +L
Sbjct: 504 EAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLL 563
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
S G V E + +E+ + P+++ Y +L +K+ + A +L M
Sbjct: 564 SGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSM 617
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
++ E G+ + +N +I+ + R EEA+ + EM+K PN T +++ AG
Sbjct: 966 QLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAG 1025
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ + ++E+ G PSV Y L+ Y+ S D+AY +M
Sbjct: 1026 KAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQM 1072
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 89/248 (35%), Gaps = 56/248 (22%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL-- 61
+ E IL +M +SG + + +I+ GR +A + +M+ P+ T
Sbjct: 257 FDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYIT 316
Query: 62 ---------------------------------EAVLSVYCFAGLVDESKEQFQEIKSSG 88
AV+ C G VDE+ F E+K G
Sbjct: 317 LLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKG 376
Query: 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS----------NIHQVTGQMIKGE 138
+ P Y L++ + K++ +D A L + M+ S N + +GQ +K
Sbjct: 377 MSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKA- 435
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
Q E++ K G + NA+L +L G A RV E G+ P+
Sbjct: 436 ------IQRYEHMKSK----GIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPD 485
Query: 199 LFRHNKLV 206
+ ++
Sbjct: 486 TITYTMMI 493
>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
Length = 1184
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 1/197 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
+ K+ +L M + G+ + F +++A + G +EA K + +M + + PN R
Sbjct: 180 ANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE-KFPPNLRY 238
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L +C G + E+KE ++K +G+ P ++ + LL+ YA + + DAY L+++M
Sbjct: 239 FTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMR 298
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I+ E VF ++ G + Y AL+ G+
Sbjct: 299 KRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMI 358
Query: 181 ERAARVLDEATKRGLFP 197
++ VLD+ K+G+ P
Sbjct: 359 DKGYSVLDDMRKKGVMP 375
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+++ M + G N + + +I+A R R +EA++ +VEME+ C+ + T A++S +
Sbjct: 293 LMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGF 352
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G++D+ +++ G++PS + Y ++ + K ++++ L+++M
Sbjct: 353 CKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKM 403
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 2/197 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L +M E+G+ + F ++ + G+ +A +M K +PN
Sbjct: 250 GKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCY 309
Query: 62 EAVLSVYCFA-GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C +DE+ F E++ G ++ Y L++ + K D Y +LD+M
Sbjct: 310 TVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMR 369
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ QVT I + + ++ + +K+ G + YN ++ LG
Sbjct: 370 KKGVMP-SQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEV 428
Query: 181 ERAARVLDEATKRGLFP 197
+ A R+ +E GL P
Sbjct: 429 KEAVRLWNEMEANGLSP 445
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 52/99 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + ++L M + GV + ++ ++ A + +FEE ++ +M++ C P+
Sbjct: 356 GMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIY 415
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
V+ + C G V E+ + E++++G+ P V + +++
Sbjct: 416 NVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMI 454
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 36/205 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + MS+ G N FN +I + + G E A + + M P+ ++
Sbjct: 907 GRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSY 966
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C AG VDE+ F E+KS+G+ P + Y ++ KS R ++A L +EM
Sbjct: 967 TILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMR- 1025
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
NR G + YN+L+ L G+ E
Sbjct: 1026 NR-----------------------------------GIVPDLYTYNSLMLNLGLAGMVE 1050
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A R+ +E GL P++F +N L+
Sbjct: 1051 QAKRMYEELQLAGLEPDVFTYNALI 1075
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 7/200 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M G A ++ +FN ++ + G+ E + Y EM RC P+ T V+S
Sbjct: 810 LFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLA 869
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ +D++ + F ++ SS P+ Y L+ AK R ++A L +EM
Sbjct: 870 KSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCA 929
Query: 130 VTGQMIKGE---FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ +I G D E+ Q+ F ++ EG ++ Y L++ L G + A
Sbjct: 930 IFNILINGYGKIGDTETACQL----FKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYY 985
Query: 187 LDEATKRGLFPELFRHNKLV 206
+E GL P+ +N+++
Sbjct: 986 FNELKSTGLDPDFIAYNRII 1005
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 9/210 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +L M GV + ++ I+ F + G +A++ + +M+ PN
Sbjct: 415 AGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVA 474
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A L G + E+K F ++ +G+ P + Y M++ Y+K + D+A LL EM
Sbjct: 475 CNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534
Query: 121 TN----RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N + ++ + + K DE+ WQM FD++ + YN LL L
Sbjct: 535 RNGCEPDVIVVNSLIDSLYKAGRVDEA-WQM----FDRMKDMKLSPTVVTYNTLLSGLGK 589
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G ++A + + + P N L+
Sbjct: 590 EGRVQKAIELFESMIXKKCSPNTISFNTLL 619
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 91/214 (42%), Gaps = 11/214 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E I RM + G + ++ +I+A G+ E A + +V+M+ P++
Sbjct: 275 AGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVI 334
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L + G +D KE + ++++ G +P V+ + +L+ V K+ +D+A+ D M
Sbjct: 335 YITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMR 394
Query: 121 TNRI-SNIHQ----VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
I N+H + G + G +D + D + G Y ++
Sbjct: 395 KQGILPNLHTYNTLICGLLRAGRIEDALK------LLDTMESVGVQPTAYTYITFIDYFG 448
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
G +A ++ +G+ P + N ++S+
Sbjct: 449 KSGETGKAVETFEKMKAKGIVPNIVACNASLYSL 482
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 37/241 (15%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-------------- 46
GGL ++ +L++M ++G N+ S+N +I Q G EA++ Y
Sbjct: 171 GGL-RQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKT 229
Query: 47 ---------------------VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
EME + PN T + V AG +DE+ E F+ +
Sbjct: 230 YSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMD 289
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
G P ++ Y +L+ + + ++A L +M N QV + +F+D +
Sbjct: 290 DEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANG-HKPDQVIYITLLDKFNDFGDL 348
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+ + ++ +GY + + L++ L + A D K+G+ P L +N L
Sbjct: 349 DTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTL 408
Query: 206 V 206
+
Sbjct: 409 I 409
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 84/189 (44%), Gaps = 1/189 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G++ S+N +I + E+A + +M+ V C P+ T +L+V+ +G + E
Sbjct: 783 GISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITEL 842
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
E ++E+ S P + Y ++++ AKSN D A ++ ++ + G +I G
Sbjct: 843 FELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDG 902
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ +F++++ G +N L+ +G E A ++ G+ P
Sbjct: 903 -LAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRP 961
Query: 198 ELFRHNKLV 206
+L + LV
Sbjct: 962 DLKSYTILV 970
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 1/194 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L M + G+ N +F I + G+ +EA + + M+ C P+ T ++
Sbjct: 248 VLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDAL 307
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C AG ++ +KE F ++K++G P + Y LL + D +M +
Sbjct: 308 CNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMP-D 366
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT ++ ++ FD + +G + YN L+ L G E A ++LD
Sbjct: 367 VVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLD 426
Query: 189 EATKRGLFPELFRH 202
G+ P + +
Sbjct: 427 TMESVGVQPTAYTY 440
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + + +G+ + ++N +I + R EEA+ Y EM P+ T
Sbjct: 976 AGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYT 1035
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ AG+V+++K ++E++ +G+ P V Y L+ Y+ S + AY + M
Sbjct: 1036 YNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNM 1094
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + RM + ++ ++N ++ + GR ++AI+ + M +C PN +
Sbjct: 555 AGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTIS 614
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY----GLL 116
+L +C V+ + + F ++ P V+ Y ++ K N+ + A+ L
Sbjct: 615 FNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLK 674
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDD 141
MH + ++ + G + G+ D
Sbjct: 675 KSMHPDHVTICTLLPGLVKCGQIGD 699
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +LS M +G + N++I++ + GR +EA + + M+ ++ P T
Sbjct: 521 GQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTY 580
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+LS G V ++ E F+ + P+ + + LL + K++ + A + +M
Sbjct: 581 NTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKM 638
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 6/206 (2%)
Query: 8 QAILSRMSE----SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLE 62
QA L M E G+A N ++ VI + + GR +EA+K + EM K P
Sbjct: 536 QAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYN 595
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
A++ YC G +D + + G+ +V Y +L+ R +AY L++EM
Sbjct: 596 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 655
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
++ +I G E N + +F+ ++ G + Y AL+ AL G +
Sbjct: 656 GLAPDVFTYNILINGHC-KEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQE 714
Query: 183 AARVLDEATKRGLFPELFRHNKLVWS 208
++ DEA +RG+ P+L +N L+ S
Sbjct: 715 TDKLFDEAVRRGIRPDLVLYNALINS 740
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 21/204 (10%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM E GVA ++N ++ A GR EA + EM P+ T +++ +C G
Sbjct: 616 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 675
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE----------MHTN 122
V ++ E F+ + G+ +V+ Y L+ +K + + L DE + N
Sbjct: 676 NVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 735
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ N H +G + + F+ + D + YN L+ L LG +
Sbjct: 736 ALINSHSTSGNIDRA-FEIMGEMEKKRIAPDDVT----------YNTLMRGLCLLGRVDE 784
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A +++DE T+RG+ P+L +N L+
Sbjct: 785 ARKLIDEMTERGIQPDLVTYNTLI 808
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 5/185 (2%)
Query: 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ +FN ++ G+ A++ +M + PN T V++ +C G V + + +
Sbjct: 488 TTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMR 543
Query: 83 EIKS-SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
E++ GI P+ Y +++ + K R D+A + DEM T V + G + D
Sbjct: 544 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 603
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+ D++ G + + YN L+ AL+ G A +++E +GL P++F
Sbjct: 604 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 663
Query: 202 HNKLV 206
+N L+
Sbjct: 664 YNILI 668
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 7/155 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + G+ + +NA+I + G + A + EMEK R P++ T
Sbjct: 710 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 769
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G VDE+++ E+ GI P ++ Y L++ Y+ DA + +EM
Sbjct: 770 NTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMN 829
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNW--QMVE 149
+ +I+ G+ DD N +MVE
Sbjct: 830 KGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVE 864
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 11/202 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ I MS GV ++ A+I A + G+ +E K + E + P+
Sbjct: 675 GNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLY 734
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
A+++ + +G +D + E E++ I P + Y L+ R D+A L+DEM
Sbjct: 735 NALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTE 794
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ ++ ++G +KG+ D + +++ +G+ + YNAL++ L
Sbjct: 795 RGIQPDLVTYNTLISGYSMKGDVKDALR------IRNEMMNKGFNPTLLTYNALIQGLCK 848
Query: 177 LGLRERAARVLDEATKRGLFPE 198
G + A ++ E + G+ P+
Sbjct: 849 NGQGDDAENMVKEMVENGITPD 870
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 36/205 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + MS+ G N FN +I + + G E A + + M P+ ++
Sbjct: 907 GRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSY 966
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C AG VDE+ F E+KS+G+ P + Y ++ KS R ++A L +EM
Sbjct: 967 TILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMR- 1025
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
NR G + YN+L+ L G+ E
Sbjct: 1026 NR-----------------------------------GIVPDLYTYNSLMLNLGLAGMVE 1050
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A R+ +E GL P++F +N L+
Sbjct: 1051 QAKRMYEELQLAGLEPDVFTYNALI 1075
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 9/210 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +L M GV + ++N I+ F + G +A++ + +M+ PN
Sbjct: 415 AGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVA 474
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A L G + E+K F ++ +G+ P + Y M++ Y+K + D+A LL EM
Sbjct: 475 CNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534
Query: 121 TN----RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N + ++ + + K DE+ WQM FD++ + YN LL L
Sbjct: 535 RNGCEPDVIVVNSLIDSLYKAGRVDEA-WQM----FDRMKDMKLSPTVVTYNTLLSGLGK 589
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G ++A + + ++ P N L+
Sbjct: 590 EGRVQKAIELFESMIEKKCSPNTISFNTLL 619
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 7/200 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M G A ++ +FN ++ + G+ E + Y EM RC P+ T V+S
Sbjct: 810 LFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLA 869
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ +D++ + F ++ SS P+ Y L+ AK R ++A L +EM
Sbjct: 870 KSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCA 929
Query: 130 VTGQMIKGE---FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ +I G D E+ Q+ F ++ EG ++ Y L++ L G + A
Sbjct: 930 IFNILINGYGKIGDTETACQL----FKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYY 985
Query: 187 LDEATKRGLFPELFRHNKLV 206
+E GL P+ +N+++
Sbjct: 986 FNELKSTGLDPDFIAYNRII 1005
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 91/214 (42%), Gaps = 11/214 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E I RM + G + ++ +I+A G+ E A + +V+M+ P++
Sbjct: 275 AGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVI 334
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L + G +D KE + ++++ G +P V+ + +L+ V K+ +D+A+ D M
Sbjct: 335 YITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMR 394
Query: 121 TNRI-SNIHQ----VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
I N+H + G + G +D + + G YN ++
Sbjct: 395 KQGILPNLHTYNTLICGLLRAGRIEDALK------LLGTMESVGVQPTAYTYNIFIDYFG 448
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
G +A ++ +G+ P + N ++S+
Sbjct: 449 KSGETGKAVETFEKMKAKGIVPNIVACNASLYSL 482
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 37/241 (15%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-------------- 46
GGL ++ +L++M ++G N+ S+N +I Q G EA++ Y
Sbjct: 171 GGL-RQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKT 229
Query: 47 ---------------------VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
EME + PN T + V AG +DE+ E F+ +
Sbjct: 230 YSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMD 289
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
G P ++ Y +L+ + + ++A L +M N QV + +F+D +
Sbjct: 290 DEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANG-HKPDQVIYITLLDKFNDFGDL 348
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+ + ++ +GY + + L++ L + A D K+G+ P L +N L
Sbjct: 349 DTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTL 408
Query: 206 V 206
+
Sbjct: 409 I 409
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 84/189 (44%), Gaps = 1/189 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G++ S+N +I + E+A + +M+ V C P+ T +L+V+ +G + E
Sbjct: 783 GISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITEL 842
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
E ++E+ S P + Y ++++ AKSN D A ++ ++ + G +I G
Sbjct: 843 FELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDG 902
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ +F++++ G +N L+ +G E A ++ G+ P
Sbjct: 903 -LAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRP 961
Query: 198 ELFRHNKLV 206
+L + LV
Sbjct: 962 DLKSYTILV 970
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 3/199 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L M + G+ N +F I + G+ +EA + + M+ C P+ T ++
Sbjct: 248 VLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDAL 307
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN-RISNI 127
C AG ++ +KE F ++K++G P + Y LL + D +M + + ++
Sbjct: 308 CNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDV 367
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
VT ++ ++ FD + +G + YN L+ L G E A ++L
Sbjct: 368 --VTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLL 425
Query: 188 DEATKRGLFPELFRHNKLV 206
G+ P + +N +
Sbjct: 426 GTMESVGVQPTAYTYNIFI 444
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + + +G+ + ++N +I + R EEA+ Y EM P+ T
Sbjct: 976 AGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYT 1035
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ AG+V+++K ++E++ +G+ P V Y L+ Y+ S + AY + M
Sbjct: 1036 YNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNM 1094
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 64/145 (44%), Gaps = 4/145 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + RM + ++ ++N ++ + GR ++AI+ + M + +C PN +
Sbjct: 555 AGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTIS 614
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY----GLL 116
+L +C V+ + + F ++ P V+ Y ++ K N+ + A+ L
Sbjct: 615 FNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLK 674
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDD 141
MH + ++ + G + G+ D
Sbjct: 675 KSMHPDHVTICTLLPGLVKCGQIGD 699
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +LS M +G + N++I++ + GR +EA + + M+ ++ P T
Sbjct: 521 GQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTY 580
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+LS G V ++ E F+ + P+ + + LL + K++ + A + +M
Sbjct: 581 NTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKM 638
>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
Length = 905
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
AI M SG+ + +N +IEAF + G + AI +M+K R P+ R ++ Y
Sbjct: 499 AIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGY 558
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG + + + ++ SG +P+VM Y L+ + ++ A +LD+M I+
Sbjct: 559 AVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNE 618
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+++G + EY F K+ G L + Y LL A G + A V
Sbjct: 619 HTYTIIMRGYAASGDIGKAFEY-FTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTR 677
Query: 189 EATKRGLFPELFRHNKLV 206
E + + + F +N L+
Sbjct: 678 EMSFQKIPRNTFIYNILI 695
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K L M SG ++NA+I + + + A+ +M PNE T
Sbjct: 561 AGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHT 620
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y +G + ++ E F +IK SG+ V Y LL KS R A + EM
Sbjct: 621 YTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMS 680
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I + +I G W+ E + ++ +G + Y + + A G
Sbjct: 681 FQKIPRNTFIYNILIDGWARRGDVWE-AEDLMKQMKEDGVPPNIHTYTSYINACCKAGDM 739
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+RA +V++E GL P + + L+
Sbjct: 740 QRAEKVIEEMVDVGLKPNVKTYTTLI 765
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + ++ +M E GV N ++ + I A + G + A K EM V PN +T ++
Sbjct: 706 EAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLI 765
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ L D + + F+E+K +G+ P Y C++ ++ +++
Sbjct: 766 KGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRAT 808
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RN+ +N +I+ + + G EA +M++ PN T
Sbjct: 667 GRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTY 726
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ ++ C AG + +++ +E+ G+ P+V Y L+ +A+ + D A +EM
Sbjct: 727 TSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEM 784
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/205 (17%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + ++ M E G+ D +++++ + + + + +++ P+ +
Sbjct: 387 GNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISY 446
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L++Y G V ++ +E++S GI + Y ML+ + + + +A+ + +EM
Sbjct: 447 GCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLR 506
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + +I+ F N + +K+ E R + ++E G +
Sbjct: 507 SGLQPDRAIYNLLIEA-FCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMK 565
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A LD + G P + +N L+
Sbjct: 566 SALDTLDLMRRSGCVPTVMTYNALI 590
>gi|357462685|ref|XP_003601624.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490672|gb|AES71875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 36/222 (16%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC-------- 54
L++E + +L M ++GV ++ S++ ++ + +F EA+ + EM +V C
Sbjct: 281 LFREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQKFVEAVSLFSEMNEVECPIDLTTCN 340
Query: 55 ---------------------------DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87
+PN + VL VY AGL E+ F ++
Sbjct: 341 IMIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSYNTVLRVYGEAGLFGEAVHLFSLMQMK 400
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
G+ +V+ Y ++++Y KS D A L+ EM + I + +T I ++
Sbjct: 401 GVPQNVVTYNTMISIYGKSLEHDKATNLIQEMQSRGIQP-NAITYSTIISIWEKAGKLDR 459
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+F KL G + Y ++ A GL A R+L+E
Sbjct: 460 AAMLFHKLRTSGVKIDEILYQTMIVAYQKAGLVAHAKRLLNE 501
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 58/119 (48%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL+ E + S M GV +N ++N +I + + ++A EM+ PN T
Sbjct: 384 AGLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDKATNLIQEMQSRGIQPNAIT 443
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++S++ AG +D + F ++++SG+ + Y ++ Y K+ A LL+E+
Sbjct: 444 YSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIVAYQKAGLVAHAKRLLNEL 502
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERT 60
GL+ L +M V+ + ++ +IE R+ + +AI + ++ P+
Sbjct: 209 GLFDSSFFWLQQMERDNVSGDLVLYSNLIELSRKLCDYSKAISIFNALKGSGNIVPDLIA 268
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++SVY A L E++ QE++ +G+ PS Y LLA+Y + ++ +A L EM+
Sbjct: 269 CNMMISVYGKAKLFREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQKFVEAVSLFSEMN 328
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 6/206 (2%)
Query: 8 QAILSRMSE----SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLE 62
QA L M E G+A N ++ VI + + GR +EA+K + EM K P
Sbjct: 162 QAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYN 221
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
A++ YC G +D + + G+ +V Y +L+ R +AY L++EM
Sbjct: 222 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 281
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
++ +I G E N + +F+ ++ G + Y AL+ AL G +
Sbjct: 282 GLAPDVFTYNILINGHC-KEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQE 340
Query: 183 AARVLDEATKRGLFPELFRHNKLVWS 208
++ DEA +RG+ P+L +N L+ S
Sbjct: 341 TDKLFDEAVRRGIRPDLVLYNALINS 366
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 21/204 (10%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM E GVA ++N ++ A GR EA + EM P+ T +++ +C G
Sbjct: 242 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 301
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE----------MHTN 122
V ++ E F+ + G+ +V+ Y L+ +K + + L DE + N
Sbjct: 302 NVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 361
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ N H +G I F+ + D + YN L+ L LG +
Sbjct: 362 ALINSHSTSGN-IDRAFEIMGEMEKKRIAPDDVT----------YNTLMRGLCLLGRVDE 410
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A +++DE T+RG+ P+L +N L+
Sbjct: 411 ARKLIDEMTERGIQPDLVTYNTLI 434
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 5/185 (2%)
Query: 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ +FN ++ G+ A++ +M + PN T V++ +C G V + + +
Sbjct: 114 TTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMR 169
Query: 83 EIKS-SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
E++ GI P+ Y +++ + K R D+A + DEM T V + G + D
Sbjct: 170 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 229
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+ D++ G + + YN L+ AL+ G A +++E +GL P++F
Sbjct: 230 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 289
Query: 202 HNKLV 206
+N L+
Sbjct: 290 YNILI 294
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 7/155 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + G+ + +NA+I + G + A + EMEK R P++ T
Sbjct: 336 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 395
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G VDE+++ E+ GI P ++ Y L++ Y+ DA + +EM
Sbjct: 396 NTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMN 455
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNW--QMVE 149
+ +I+ G+ DD N +MVE
Sbjct: 456 KGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVE 490
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 11/202 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ I MS GV ++ A+I A + G+ +E K + E + P+
Sbjct: 301 GNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLY 360
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
A+++ + +G +D + E E++ I P + Y L+ R D+A L+DEM
Sbjct: 361 NALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTE 420
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ ++ ++G +KG+ D + +++ +G+ + YNAL++ L
Sbjct: 421 RGIQPDLVTYNTLISGYSMKGDVKDALRIR------NEMMNKGFNPTLLTYNALIQGLCK 474
Query: 177 LGLRERAARVLDEATKRGLFPE 198
G + A ++ E + G+ P+
Sbjct: 475 NGQGDDAENMVKEMVENGITPD 496
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + +M E G+ N+ ++N +I+ + G E A EM K P+ T
Sbjct: 311 GRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTY 370
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G + E+ + +E++ GI+P + Y +L+ Y++ A+ L +EM +
Sbjct: 371 NLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLS 430
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I H VT + + + + +F+K+ +G + +NA+++ G E
Sbjct: 431 KGIEPTH-VTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVE 489
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA +L E ++ + P+ N L+
Sbjct: 490 RAFMLLKEMDRKSVPPDEVTFNTLM 514
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 1/196 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G+ ++ N ++ F + R E A Y EM ++R T +++V C G
Sbjct: 183 MKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGK 242
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ +++E ++ G P+V+ Y ++ Y+ + A +LD M I G
Sbjct: 243 LKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 302
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G E + +FDK+ G YN L++ G ERA DE K+
Sbjct: 303 LISG-MCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKK 361
Query: 194 GLFPELFRHNKLVWSV 209
G+ P + +N LV ++
Sbjct: 362 GIMPSVSTYNLLVHAL 377
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + ++ + GV+ + FNA+++ G E A EM++ P+E T +
Sbjct: 454 KEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTL 513
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ C G V+E++ E+K GI P + Y L++ Y + DA+ + DEM
Sbjct: 514 MQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEM 568
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M V + +FN +++ + G+ EEA EM++ P+ + ++S Y
Sbjct: 494 LLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYG 553
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + ++ E+ S G P+++ Y L+ K+ D A LL EM IS
Sbjct: 554 RRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDS 613
Query: 130 VTGQMIKG 137
+I+G
Sbjct: 614 TYLSLIEG 621
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 6/173 (3%)
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ ++ V C DE+ + F +K GI+P + +L+++ K NR + A+ L EM
Sbjct: 160 FDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMF 219
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
RIS+ M+ E + + G+ + YN ++ G
Sbjct: 220 RLRISSTVYTFNIMV-NVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 278
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
E A R+LD +G+ P+ + + L+ M + G S +KM E+
Sbjct: 279 EGARRILDAMRVKGIEPDSYTYGSLISG-----MCKEGRLEEASGLFDKMVEI 326
>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
Length = 327
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 9/209 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + +S G A + S++ ++ ++E+ K +M C+PN T
Sbjct: 74 GLVDRAFEFIRYISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTY 133
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S C G V+E+ + +K G+ P Y L+A + K +R D A L+ M +
Sbjct: 134 SILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMIS 193
Query: 122 N----RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ I N + + + K DE+ +F+KL G + YN L ALW
Sbjct: 194 DGCLPDIVNYNTILSTLCKNGKADEA-----LKIFEKLGEVGCPPNVSSYNTLFSALWSS 248
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G + RA ++ E + + P+ +N L+
Sbjct: 249 GHKIRALGMILEMLSKDIDPDEITYNSLI 277
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E I ++ E G N S+N + A G A+ +EM DP+E T
Sbjct: 214 GKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHKIRALGMILEMLSKDIDPDEITY 273
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+++S C +VD++ E +++SS PSV+ Y ++L +K +R DA
Sbjct: 274 NSLISCLCRDAMVDQAIELLVDMESSVYQPSVISYNIVLLGLSKVHRISDA 324
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 76/185 (41%), Gaps = 1/185 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +IEA G ++ +K EM + P+ AV+ C GLVD + E + I
Sbjct: 27 TYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIRYI 86
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ G P V+ Y +LL +W+D L+ +M + + VT ++ +
Sbjct: 87 SAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEP-NVVTYSILISSLCRDGK 145
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + +G Y+ L+ A + A L+ G P++ +N
Sbjct: 146 VEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVNYNT 205
Query: 205 LVWSV 209
++ ++
Sbjct: 206 ILSTL 210
>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 97/215 (45%), Gaps = 5/215 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEA-FRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL KE A+ M E G + N ++N +I A ++ R + + + EM++ PN+ T
Sbjct: 79 GLLKEAWALFEAMKEKGCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDIT 138
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ L D + + +E+K+ LP+V+ Y ++ +S R D+A L +EM
Sbjct: 139 YNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMK 198
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
S ++K + E ++ +F + EG + YN +++ GL
Sbjct: 199 ELGRSPNSWTYNSLLKA-YAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLF 257
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
A V E ++G P+ +N + +D + W
Sbjct: 258 AEAEGVFLEMQRKGCTPDRVTYNTM---LDAYSKW 289
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 1/215 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M E G + NS ++N++++A+ + GR+E+A+ +V ME C P+ T
Sbjct: 185 GRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTY 244
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ + GL E++ F E++ G P + Y +L Y+K +R A LL M
Sbjct: 245 NTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKR 304
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ ++ S + ++ +F +L G+ + ++AL+ LG E
Sbjct: 305 AGCTPDLWTYNILLDAAGKAGSASEAMQ-IFHELKAAGHSPNLVSFSALINMYGRLGYFE 363
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A R E G P + L+ S H M++
Sbjct: 364 EAERAWVEMRATGCVPNATAYCGLMNSYSHHGMYK 398
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 9/202 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ M ++GV N ++N ++ A F+ A + EM+ V C PN + +++
Sbjct: 122 GLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSL 181
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLLDEMHTNRI 124
+G +DE+ E F+E+K G P+ Y LL YA+ R++ A G+ DE +
Sbjct: 182 GRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDL 241
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ V +G E+ E VF ++ +G YN +L+A R RA
Sbjct: 242 YTYNTVIDMCGRGGLFAEA-----EGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRAR 296
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+L + G P+L+ +N L+
Sbjct: 297 DLLKTMKRAGCTPDLWTYNILL 318
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 25/216 (11%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E I MS++GVA + ++ A++ + + G +EA + M++ C PN T
Sbjct: 47 GLARE---IFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKGCSPNVLTY 103
Query: 62 EAVLS-----VYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSNRWDDAYGL 115
+++ Y LV F+E+K +G+ P+ + Y CM+ A S +D A +
Sbjct: 104 NTLINACTKRAYRLPDLVG----LFEEMKQAGVQPNDITYNCMVNACVCLS-LFDTASQI 158
Query: 116 LDEMHT-----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
L EM N IS + G D+ VE +F+++ G YN+L
Sbjct: 159 LKEMKAVNCLPNVISYTTMINSLGRSGRLDEA-----VE-LFEEMKELGRSPNSWTYNSL 212
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L+A G E+A + G P+L+ +N ++
Sbjct: 213 LKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVI 248
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 7/207 (3%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ IL M N S+ +I + + GR +EA++ + EM+++ PN T
Sbjct: 151 LFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYN 210
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++L Y G +++ F ++ G +P + Y ++ + + + +A G+ EM
Sbjct: 211 SLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRK 270
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC---EGYGLGMRFYNALLEALWCLGL 179
+ M+ D S W D L G + YN LL+A G
Sbjct: 271 GCTPDRVTYNTML----DAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGS 326
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
A ++ E G P L + L+
Sbjct: 327 ASEAMQIFHELKAAGHSPNLVSFSALI 353
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 56/112 (50%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+ E + + M G + ++N +++A+ + R A M++ C P+ T
Sbjct: 254 GGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWT 313
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+L AG E+ + F E+K++G P+++ + L+ +Y + +++A
Sbjct: 314 YNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGRLGYFEEA 365
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 64/152 (42%)
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
E ++S+ G + ++E F+ + +G+ PSV Y LL+ YAK +A+ L +
Sbjct: 30 EHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFE 89
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
M S +I + +F+++ G YN ++ A CL
Sbjct: 90 AMKEKGCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCL 149
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
L + A+++L E P + + ++ S+
Sbjct: 150 SLFDTASQILKEMKAVNCLPNVISYTTMINSL 181
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 12/185 (6%)
Query: 28 AVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87
+I + G+ A + + M K P+ A+LS Y GL+ E+ F+ +K
Sbjct: 35 TIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEK 94
Query: 88 GILPSVMCYCMLL-AVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGEFDD 141
G P+V+ Y L+ A ++ R D GL +EM N I+ V + FD
Sbjct: 95 GCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDT 154
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
S Q+++ + +NC + Y ++ +L G + A + +E + G P +
Sbjct: 155 AS--QILKEM-KAVNCLPNVIS---YTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWT 208
Query: 202 HNKLV 206
+N L+
Sbjct: 209 YNSLL 213
>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
Length = 900
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
AI M SG+ + +N +IEAF + G + AI +M+K R P+ R ++ Y
Sbjct: 494 AIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGY 553
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG + + + ++ SG +P+VM Y L+ + ++ A +LD+M I+
Sbjct: 554 AVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNE 613
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+++G + EY F K+ G L + Y LL A G + A V
Sbjct: 614 HTYTIIMRGYAASGDIGKAFEY-FTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTR 672
Query: 189 EATKRGLFPELFRHNKLV 206
E + + + F +N L+
Sbjct: 673 EMSFQKIPRNTFIYNILI 690
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K L M SG ++NA+I + + + A+ +M PNE T
Sbjct: 556 AGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHT 615
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y +G + ++ E F +IK SG+ V Y LL KS R A + EM
Sbjct: 616 YTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMS 675
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I + +I G W+ E + ++ +G + Y + + A G
Sbjct: 676 FQKIPRNTFIYNILIDGWARRGDVWE-AEDLMKQMKEDGVPPNIHTYTSYINACCKAGDM 734
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+RA +V++E GL P + + L+
Sbjct: 735 QRAEKVIEEMVDVGLKPNVKTYTTLI 760
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 8/195 (4%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+KE + LS + N ++ +I A Q G E A + EME+ D
Sbjct: 355 LFKEAKTKLSSL-------NGIIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYH 407
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ Y ++ F+ +K G PS++ Y LL +Y K + A + EM +
Sbjct: 408 SMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESC 467
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
I + ++ +I G F ++ +F+++ G YN L+EA +G +R
Sbjct: 468 GIKHNNKTYSMLING-FIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDR 526
Query: 183 AARVLDEATKRGLFP 197
A +L++ K + P
Sbjct: 527 AICILEKMQKERMQP 541
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + ++ +M E GV N ++ + I A + G + A K EM V PN +T ++
Sbjct: 701 EAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLI 760
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ L D + + F+E+K +G+ P Y C++ ++ +++
Sbjct: 761 KGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRAT 803
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RN+ +N +I+ + + G EA +M++ PN T
Sbjct: 662 GRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTY 721
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ ++ C AG + +++ +E+ G+ P+V Y L+ +A+ + D A +EM
Sbjct: 722 TSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEM 779
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/205 (17%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + ++ M E G+ D +++++ + + + + +++ P+ +
Sbjct: 382 GNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISY 441
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L++Y G V ++ +E++S GI + Y ML+ + + + +A+ + +EM
Sbjct: 442 GCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLR 501
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + +I+ F N + +K+ E R + ++E G +
Sbjct: 502 SGLQPDRAIYNLLIEA-FCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMK 560
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A LD + G P + +N L+
Sbjct: 561 SALDTLDLMRRSGCVPTVMTYNALI 585
>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
Length = 287
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 3/191 (1%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
SG+ ++N VI A + G+ E+A+K Y +M P+ T A++S Y G V++
Sbjct: 99 SGIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEK 158
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-NRISNIHQVTGQMI 135
+ + F+++ G +V+ Y L++ K+ RW+ A L +MH N N+ VT +
Sbjct: 159 ALDIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNV--VTYNSL 216
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+W+ +F+++ +G Y L+ A G RA + ++ +G
Sbjct: 217 IAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGC 276
Query: 196 FPELFRHNKLV 206
P+ N L+
Sbjct: 277 HPDAAVFNSLM 287
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 59/112 (52%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M G RN +++++I A + GR+E A++ + +M K C PN T ++++
Sbjct: 162 IFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACS 221
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
G +++ E F+++++ G P + YC L+ Y + +W A ++M +
Sbjct: 222 HGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQS 273
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 93/208 (44%), Gaps = 1/208 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +M E G + N ++N +I+ + E + V + + RT V+S
Sbjct: 55 QDVYKQMLEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISA 114
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+G +++ + ++++ ++G+ PS Y L++ Y K + + A + +M R
Sbjct: 115 CNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDM-IRRGCER 173
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ +T + + W+M +F K++ E + YN+L+ A G E+A+ +
Sbjct: 174 NVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELF 233
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMW 215
++ +G P+ + L+ + + W
Sbjct: 234 EQMQTQGCKPDSITYCGLITAYERGGQW 261
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 77/162 (47%), Gaps = 1/162 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M +GV ++ ++ A+I A+ + G+ E+A+ + +M + C+ N T +++S
Sbjct: 127 VYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSLISACE 186
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG + + E F ++ P+V+ Y L+A + W+ A L ++M T
Sbjct: 187 KAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGCKP-DS 245
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
+T + ++ W+ F+++ +G +N+L+
Sbjct: 246 ITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +++ + +M G +S ++ +I A+ +GG++ A+KA+ +M+ C P+
Sbjct: 223 GGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAV 282
Query: 61 LEAVL 65
+++
Sbjct: 283 FNSLM 287
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++GV + ++N+++ + G+ +EAI +M +PN T ++++ C
Sbjct: 258 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLC 317
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + + LLD M N I H
Sbjct: 318 KNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHH 377
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I E Q + VF K+ G + Y +++ L G + A ++
Sbjct: 378 VFNILICAYAKQEKVDQAM-LVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQ 436
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
GL P + + L+ + W+
Sbjct: 437 MIDEGLTPNIIVYTSLIHGLCTCDKWD 463
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 96/215 (44%), Gaps = 21/215 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L M +G+ + FN +I A+ + + ++A+ + +M + +PN
Sbjct: 355 GALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCY 414
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ V C +G VD++ F+++ G+ P+++ Y L+ ++WD A L+ EM
Sbjct: 415 GTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLD 474
Query: 122 ----------NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
N I + H G++I+ E +FD + G + YN L+
Sbjct: 475 RGICLNTIFFNSIIDSHCKEGRVIES-----------EKLFDLMVRIGVKPDIITYNTLI 523
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ G + A ++L G+ P++ + L+
Sbjct: 524 DGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLI 558
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 1/181 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + ++ M + G+ N+ FN++I++ + GR E+ K + M ++ P+ T ++
Sbjct: 464 KAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C AG +DE+ + + S G+ P ++ Y L+ Y + +R DDA L EM ++ +S
Sbjct: 524 DGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVS 583
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+++G F E ++ + G L + YN +L L L + A R
Sbjct: 584 PNIITYNIILQGLFHTRRTAAAKE-LYVSITKSGTQLELSTYNIILHGLCKNNLTDEALR 642
Query: 186 V 186
+
Sbjct: 643 M 643
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 8/202 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---CDPNERTLEAVLS 66
+L RM+E G + S+N +++ R +EA++ M R P+ + VL+
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+ G D++ + E+ GILP V+ Y ++A K+ D A +L+ M N +
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMP 269
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYV--FDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
++ G S+ Q E + K+ +G + Y++L+ L G A
Sbjct: 270 DCMTYNSILHGYC---SSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ D TKRGL P++ + L+
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLL 348
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 1/184 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N V+ F + G ++A Y EM P+ T ++++ C A +D++ E +
Sbjct: 203 SYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTM 262
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+G++P M Y +L Y S + +A G L +M ++ + + VT +
Sbjct: 263 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEP-NVVTYSSLMNYLCKNGR 321
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+FD + G + Y LL+ G +LD + G+ P+ N
Sbjct: 322 STEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNI 381
Query: 205 LVWS 208
L+ +
Sbjct: 382 LICA 385
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 11/212 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV N ++++++ + GR EA K + M K +P+ T
Sbjct: 285 GQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATY 344
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P + +L+ YAK + D A + +M
Sbjct: 345 RTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQ 404
Query: 122 NRISNIHQVTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ ++ G +I G DD + F+++ EG + Y +L+ L
Sbjct: 405 HGLNPNVVCYGTVIDVLCKSGSVDDAMLY------FEQMIDEGLTPNIIVYTSLIHGLCT 458
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
++A ++ E RG+ N ++ S
Sbjct: 459 CDKWDKAEELILEMLDRGICLNTIFFNSIIDS 490
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 45/114 (39%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ M SGV+ N ++N +++ R A + YV + K T +L
Sbjct: 572 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
C L DE+ FQ + + + + +++ K R D+A L N
Sbjct: 632 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSAN 685
>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
Length = 680
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ +L M GV + +N VI+ F + + A+ + M +P+ T
Sbjct: 394 GEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTW 453
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G ++E F+ ++ G LP Y +++ Y RWDD LL +M +
Sbjct: 454 NTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKS 513
Query: 122 -----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N +++ V G F+D +E +++ G YNAL+ A
Sbjct: 514 QGILPNVVTHTTLVDVYGKSGRFNDA-----IE-CLEEMKSVGLKPSSTMYNALINAYAQ 567
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
GL E+A T GL P L N L+
Sbjct: 568 RGLSEQAVNAFRVMTSDGLKPSLLALNSLI 597
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 91/211 (43%), Gaps = 1/211 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +A+ + +SG+ + ++NA+++ + + G ++A EMEK P+E T ++
Sbjct: 293 EAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLI 352
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
Y AG + ++ +E+++ + P+ + LLA + W + +L EM + +
Sbjct: 353 DAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVK 412
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
Q +I F + FD++ EG +N L++ G A
Sbjct: 413 PDRQFYNVVID-TFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEE 471
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ + +RG P +N ++ S W+
Sbjct: 472 MFEAMERRGCLPCATTYNIMINSYGDQERWD 502
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 73/154 (47%), Gaps = 1/154 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L +M G+ N + +++ + + GRF +AI+ EM+ V P+ A++
Sbjct: 503 DMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALI 562
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ Y GL +++ F+ + S G+ PS++ L+ + + R +A+ +L M N +
Sbjct: 563 NAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVK 622
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159
VT + +Q V V++++ G
Sbjct: 623 P-DVVTYTTLMKALIRVDKFQKVPVVYEEMIMSG 655
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 76/215 (35%), Gaps = 36/215 (16%)
Query: 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
N +I F + G +A++ + TL +++S +G E++ F+E++
Sbjct: 244 NDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQ 303
Query: 87 SGILPSVMCYCMLLAVYAKS-----------------------------------NRWDD 111
SGI P Y LL Y K+ RW+
Sbjct: 304 SGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWES 363
Query: 112 AYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
A +L EM + V +++ G F D WQ V ++ G +FYN ++
Sbjct: 364 ARIVLKEMEAGDVQPNSFVFSRLLAG-FRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVI 422
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ + A D G+ P+ N L+
Sbjct: 423 DTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLI 457
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + L M G+ +S +NA+I A+ Q G E+A+ A+ M P+
Sbjct: 533 SGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLA 592
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
L ++++ + E+ Q +K +G+ P V+ Y L+ + +++ + +EM
Sbjct: 593 LNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEM 651
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 8/200 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M E G N F +I F + GR + A+ EM+ D + + +
Sbjct: 217 LFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFG 276
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG VD S + F E+KS G++P + Y ++ V K+NR D+A L +++ NR
Sbjct: 277 KAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAY 336
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER---AARV 186
MI G + + + ++ +G + YN +L CLG + R A R+
Sbjct: 337 AYNTMIMG-YGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILT---CLGKKRRVEEALRI 392
Query: 187 LDEATKRGLFPELFRHNKLV 206
+E KR P + +N L+
Sbjct: 393 FEE-MKRDAVPNVPTYNILI 411
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL E + M E G ++ ++NAVI+ F + G+ +A + EM+ P T
Sbjct: 592 AGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVT 651
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+V+ +DE+ F+E KS+GI +V+ Y L+ + K R D+AY +++E+
Sbjct: 652 YGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEEL 710
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 1/167 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+A+ ++ G ++ S++ +I + G E + + M++ C + AV+
Sbjct: 564 RALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDG 623
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+C +G V+++ + +E+K G P+V+ Y ++ AK +R D+AY L +E +N I
Sbjct: 624 FCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLN 683
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
V +I G F + ++L +G + +N LL+AL
Sbjct: 684 VVVYSSLIDG-FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDAL 729
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 100/244 (40%), Gaps = 44/244 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + ++ +M + G + + ++I +F + GR E+ K Y EM C P+ +
Sbjct: 488 GRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLI 547
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL--------------------- 100
+ AG ++ + F+EI + G +P Y +L+
Sbjct: 548 NTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKE 607
Query: 101 -----------AV---YAKSNRWDDAYGLLDEM----HTNRISNIHQVTGQMIKGEFDDE 142
AV + KS + + AY LL+EM H + V + K + DE
Sbjct: 608 QGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDE 667
Query: 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
+ +F++ G L + Y++L++ +G + A +++E ++GL P ++
Sbjct: 668 AYM-----LFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTW 722
Query: 203 NKLV 206
N L+
Sbjct: 723 NCLL 726
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 92/204 (45%), Gaps = 12/204 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + E +L R G + ++N ++ + R EEA++ + EM++ PN T
Sbjct: 348 AGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKR-DAVPNVPT 406
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ + C G ++ + E +++ +G+ P+V+ +++ K+ + ++A + + M
Sbjct: 407 YNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMD 466
Query: 121 -----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
N ++ + G G DD + + E + D C G+ G Y +L+ + +
Sbjct: 467 DKVCTPNAVTFSSLIDGLGKCGRVDDA--YSLYEKMLD---C-GHVPGAIVYTSLIRSFF 520
Query: 176 CLGLRERAARVLDEATKRGLFPEL 199
G +E ++ E G P+L
Sbjct: 521 KCGRKEDGHKIYKEMVHTGCSPDL 544
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 6/195 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E I+ + + G+ N ++N +++A + EA+ + M+ ++C PN+ T
Sbjct: 698 GRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITY 757
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C +++ +QE++ G+ P+ + Y +++ AK+ +A GL
Sbjct: 758 SILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKA 817
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEY-VFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N MI+G +N M Y +F++ +G + + LL+AL
Sbjct: 818 NGGIPDSASYNAMIEGL--SSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECL 875
Query: 181 ERAA---RVLDEATK 192
E+AA VL E K
Sbjct: 876 EQAAIVGAVLKETAK 890
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 11/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M +G+ N + N +I+ + + EEA + M+ C PN T +++
Sbjct: 426 IRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLG 485
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIH 128
G VD++ ++++ G +P + Y L+ + K R +D + + EM HT ++
Sbjct: 486 KCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLT 545
Query: 129 QVTGQM----IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ M GE + +F ++N G+ R Y+ L+ L GL
Sbjct: 546 LINTYMDCVFKAGETEKG------RALFREINAHGFIPDARSYSILIHGLVKAGLANETY 599
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ ++G + +N ++
Sbjct: 600 ELFYAMKEQGCVLDTHAYNAVI 621
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 11/163 (6%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+G+ N ++++I+ F + GR +EA E+ + PN T +L A ++E
Sbjct: 678 NGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINE 737
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIHQVT 131
+ FQ +K P+ + Y +L+ + +++ A+ EM N I+ ++
Sbjct: 738 ALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMIS 797
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
G G + S +F + G YNA++E L
Sbjct: 798 GLAKAGNILEASG------LFSRFKANGGIPDSASYNAMIEGL 834
>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
Length = 901
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
AI M SG+ + +N +IEAF + G + AI +M+K R P+ R ++ Y
Sbjct: 495 AIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGY 554
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG + + + ++ SG +P+VM Y L+ + ++ A +LD+M I+
Sbjct: 555 AVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNE 614
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+++G + EY F K+ G L + Y LL A G + A V
Sbjct: 615 HTYTIIMRGYAASGDIGKAFEY-FTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTR 673
Query: 189 EATKRGLFPELFRHNKLV 206
E + + + F +N L+
Sbjct: 674 EMSFQKIPRNTFIYNILI 691
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K L M SG ++NA+I + + + A+ +M PNE T
Sbjct: 557 AGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHT 616
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y +G + ++ E F +IK SG+ V Y LL KS R A + EM
Sbjct: 617 YTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMS 676
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I + +I G W+ E + ++ +G + Y + + A G
Sbjct: 677 FQKIPRNTFIYNILIDGWARRGDVWE-AEDLMKQMKEDGVPPNIHTYTSYINACCKAGDM 735
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+RA +V++E GL P + + L+
Sbjct: 736 QRAEKVIEEMVDVGLKPNVKTYTTLI 761
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + ++ +M E GV N ++ + I A + G + A K EM V PN +T ++
Sbjct: 702 EAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLI 761
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ L D + + F+E+K +G+ P Y C++ ++ +++
Sbjct: 762 KGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRAT 804
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RN+ +N +I+ + + G EA +M++ PN T
Sbjct: 663 GRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTY 722
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ ++ C AG + +++ +E+ G+ P+V Y L+ +A+ + D A +EM
Sbjct: 723 TSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEM 780
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/205 (17%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + ++ M E G+ D +++++ + + + + +++ P+ +
Sbjct: 383 GNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISY 442
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L++Y G V ++ +E++S GI + Y ML+ + + + +A+ + +EM
Sbjct: 443 GCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLR 502
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + +I+ F N + +K+ E R + ++E G +
Sbjct: 503 SGLQPDRAIYNLLIEA-FCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMK 561
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A LD + G P + +N L+
Sbjct: 562 SALDTLDLMRRSGCVPTVMTYNALI 586
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++GV + ++N+++ + G+ +EAI +M +P+ T ++ C
Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLC 312
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + +GLLD M N I H
Sbjct: 313 KNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHY 372
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I + ++ VF K+ +G Y A++ L G E A ++
Sbjct: 373 VFSILICA-YANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 431
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
GL P +N L+ + WE
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTCNKWE 458
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 83/167 (49%), Gaps = 1/167 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ ++ M + G+ N+ FN++I++ + GR E+ K + M ++ PN T +++
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLING 520
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
YC AG +DE+ + + S G+ P+ + Y L+ Y K +R +DA L EM ++ +S
Sbjct: 521 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 580
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+++G F E ++ ++ G + + YN +L L
Sbjct: 581 IITYNIILQGLFQTRRTAAAKE-LYVRITESGTQIELSTYNIILHGL 626
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 4/200 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---CDPNERTLEAVLS 66
+L RM+E G N S+N +++ R +EA++ M R P+ + V++
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+ G D++ + E+ GILP V+ Y ++A K+ D A +L+ M N +
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
++ G + + ++ K+ +G + Y+ L++ L G A ++
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFL-KKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKI 323
Query: 187 LDEATKRGLFPELFRHNKLV 206
D TKRGL PE+ + L+
Sbjct: 324 FDSMTKRGLKPEITTYGTLL 343
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 21/215 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M +G+ + F+ +I A+ G+ ++A+ + +M + +PN T
Sbjct: 350 GALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTY 409
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
AV+ + C +G V+++ F+++ G+ P + Y L+ N+W+ A L+ EM
Sbjct: 410 GAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD 469
Query: 120 --------HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
N I + H G++I+ E +F+ + G + YN L+
Sbjct: 470 RGICLNTIFFNSIIDSHCKEGRVIES-----------EKLFELMVRIGVKPNVITYNTLI 518
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A ++L GL P ++ L+
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 1/184 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+ VI F + G ++A Y EM P+ T ++++ C A +D++ E +
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+G++P M Y +L Y S + +A G L +M ++ + VT ++
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEP-DVVTYSLLMDYLCKNGR 316
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+FD + G + Y LL+ G +LD + G+ P+ + +
Sbjct: 317 CMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSI 376
Query: 205 LVWS 208
L+ +
Sbjct: 377 LICA 380
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV + +++ +++ + GR EA K + M K P T
Sbjct: 280 GQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P + +L+ YA + D A + +M
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQ 399
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N + VT + G + F+++ EG G YN+L+ L E
Sbjct: 400 QGL-NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 458
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
RA ++ E RG+ N ++ S
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDS 485
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +LS M G+ N+ +++ +I + + R E+A+ + EME P+ T
Sbjct: 525 GKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITY 584
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+L +KE + I SG + Y ++L K+ DDA
Sbjct: 585 NIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDA 635
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 1/202 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE A+L M+ GVA N S+N+VI GR E + EM P+E T +
Sbjct: 259 KEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTL 318
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
++ +C G + + E+ G+ P+V+ Y L+ K+ A + D+M +
Sbjct: 319 VNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGL 378
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G F + V ++ G+ + YNAL+ LG + A
Sbjct: 379 RPNERTYTTLIDG-FCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAV 437
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+L +RGL P++ ++ ++
Sbjct: 438 GILRGMVERGLPPDVVSYSTVI 459
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 34/235 (14%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M G++ N ++ +I + G A++ + +M PNERT ++ +C
Sbjct: 334 LLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFC 393
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---------- 119
GL++E+ + E+ SG PSV+ Y L+ Y R +A G+L M
Sbjct: 394 QKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVV 453
Query: 120 ----------HTNRISNIHQVTGQMI-KGEFDDESNW-----------QMVEY--VFDKL 155
+ Q+ +M+ KG D + ++VE +F ++
Sbjct: 454 SYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREM 513
Query: 156 NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVD 210
G Y +L+ A G +A R+ DE +RG P+ ++ L+ ++
Sbjct: 514 MRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLN 568
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 36/238 (15%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT--- 60
Y + + + M +GV+ N ++N +I G E+ + +MEK PN T
Sbjct: 188 YDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNT 247
Query: 61 --------------------------------LEAVLSVYCFAGLVDESKEQFQEIKSSG 88
+V++ C G + E E +E++ G
Sbjct: 248 LIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKG 307
Query: 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMV 148
++P + Y L+ + K LL EM +S + VT + N
Sbjct: 308 LVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSP-NVVTYTTLINCMCKAGNLSRA 366
Query: 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+FD++ G R Y L++ GL A +VL E G P + +N LV
Sbjct: 367 VEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALV 424
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 98/249 (39%), Gaps = 28/249 (11%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E IL M E G+ + S++ VI F + +A + EM + P+ T
Sbjct: 431 GRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTY 490
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C + E+ + F+E+ G+ P + Y L+ Y A L DEM
Sbjct: 491 SSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEM-V 549
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL------- 174
R VT ++ + ++ ++ + + KL E YN L+E
Sbjct: 550 QRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKS 609
Query: 175 -------WCL-GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
+C+ GL A RV +R P N ++++ +H GG
Sbjct: 610 VEGLVKGFCMKGLMNEADRVFKTMLQRNHKP-----NAAIYNLMIHGHSRGGN------- 657
Query: 227 LNKMYEMFM 235
++K Y ++M
Sbjct: 658 VHKAYNLYM 666
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 96/206 (46%), Gaps = 2/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + C+ I +M++ V + +N++I + GR EE+ K + +M++ PNE T
Sbjct: 481 GNVSLACE-IFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFT 539
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y G ++ +++ Q + +G+ P+ + Y LL Y KS+ + M
Sbjct: 540 YSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSML 599
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +++ G +I N + V + G + Y++L+ L R
Sbjct: 600 DQGVMLDNRIYGILIH-NLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADR 658
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E+A +LDE +K+G+ P + +N L+
Sbjct: 659 EKAFGILDEMSKKGVDPNIVCYNALI 684
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 3/199 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
++L R E AR + +EA+ + F+ A K VEM + C N T +++
Sbjct: 209 HSVLQRAVEGSAARGR--HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAG 266
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C +G V+E+ ++++ G++P Y L+ KS R ++A LLDEM +
Sbjct: 267 LCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPN 326
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
V +I G F E N + ++ G Y+ L+ L +G +RA+ +L
Sbjct: 327 VVVYANLIDG-FMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLL 385
Query: 188 DEATKRGLFPELFRHNKLV 206
+ + P+ +N ++
Sbjct: 386 KQMVRDSHRPDTITYNLII 404
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 102/232 (43%), Gaps = 16/232 (6%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + +L M E G N+ ++N +I + G EEA +ME P+ T A
Sbjct: 238 FDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGA 297
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---- 119
+++ C + +E+K E+ + + P+V+ Y L+ + + D+A+ ++ EM
Sbjct: 298 LINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAG 357
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
N+I+ + V G G+ D S + ++ + + YN ++E +
Sbjct: 358 VQPNKITYDNLVRGLCKMGQMDRAS------LLLKQMVRDSHRPDTITYNLIIEGHFRHH 411
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
++ A R+L E G+ P ++ +S+ +H + + G S L +M
Sbjct: 412 SKKDAFRLLSEMENAGISPNVY-----TYSIMIHGLCQSGEPEKASDLLEEM 458
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 38/238 (15%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K+ +LS M +G++ N +++ +I Q G E+A EM PN +
Sbjct: 414 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 473
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH---- 120
+S YC G V + E F ++ +LP + CY L+ +K R +++ +M
Sbjct: 474 ISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL 533
Query: 121 -TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD------------------------KL 155
N + + G + G D ES Q+V+ + D K+
Sbjct: 534 LPNEFTYSGLIHGYLKNG--DLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKV 591
Query: 156 NC-------EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +G L R Y L+ L G E A RVL K G P++ ++ L+
Sbjct: 592 SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLI 649
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E M + G+ + ++ A+I + R EA EM PN
Sbjct: 271 GAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVY 330
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
++ + G DE+ + +E+ ++G+ P+ + Y L+ K + D A LL +M
Sbjct: 331 ANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVR 390
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
++R I +I+G F S + + N G + Y+ ++ L G
Sbjct: 391 DSHRPDTI--TYNLIIEGHFRHHSKKDAFRLLSEMENA-GISPNVYTYSIMIHGLCQSGE 447
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
E+A+ +L+E T +GL P F + L+
Sbjct: 448 PEKASDLLEEMTTKGLKPNAFVYAPLI 474
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 77/197 (39%), Gaps = 36/197 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M ++ ++N +IE + ++A + EME PN T ++ C
Sbjct: 384 LLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLC 443
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G +++ + +E+ + G+ P+ Y L++ Y +
Sbjct: 444 QSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR------------------------ 479
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
E N + +FDK+ + YN+L+ L +G E + + +
Sbjct: 480 ------------EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQ 527
Query: 190 ATKRGLFPELFRHNKLV 206
+RGL P F ++ L+
Sbjct: 528 MQERGLLPNEFTYSGLI 544
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
IL MS+ GV N +NA+I+ + G A + + PN T +++
Sbjct: 663 GILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGS 722
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G + + + E+ ++GI P Y +L + + + A L++EM
Sbjct: 723 CKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 773
>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1508
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 110/247 (44%), Gaps = 25/247 (10%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +++ + +L M E+G+ N+ + + ++ ++ + G+ EEA R N RT
Sbjct: 1082 SGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEAD---------RILKNLRT 1132
Query: 61 LEAVLSVYCFAGLVD------ESK---EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111
+ AVL ++ ++D ++K E+ E+K + I P + + + S +D
Sbjct: 1133 MGAVLDTLPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVND 1192
Query: 112 AYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
A LL+ + ++ G+ ES V+ +L F NAL+
Sbjct: 1193 ANNLLNALQAVGFDLPIRLLGE------KSESLVSEVDQCLGRLEHVEDNAAFNFVNALV 1246
Query: 172 EALWCLGLRERAARVLDEATKRGLF-PELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+ LW LR A+ V A KR ++ ++FR + W D ++ G A +++WL+ M
Sbjct: 1247 DLLWAFELRATASWVFQLAIKRSIYRHDIFRVAQKDWGADFRKLSAGSALVGLTLWLDHM 1306
Query: 231 YEMFMMG 237
+ + G
Sbjct: 1307 QDASLQG 1313
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 29/211 (13%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + + G+ + ++N +I A + +EAI + ME RC P+ T A++SVY
Sbjct: 323 LLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYG 382
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +++ F+++KS+G P + Y LL ++K E +T ++ +I +
Sbjct: 383 RCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSK------------EGNTEKVRDISE 430
Query: 130 VTGQMIKGEF-DDESNWQMVEYVFDK-------------LNCEGYGLGMRFYNALLEALW 175
+M+K F DE + + +++ K + G Y L++ L
Sbjct: 431 ---EMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLG 487
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
E A++V+ E G+ P L ++ L+
Sbjct: 488 KASKIEEASKVMSEMLDAGVKPTLHTYSALI 518
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 86/194 (44%), Gaps = 3/194 (1%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS--VYCFAG 72
+ES +A +NA++ + + G FE+ + + M + C+P+ + +++ V A
Sbjct: 256 AESVIADTVQVYNAMMGVYARNGNFEKVNEMFNLMRERGCEPDIVSFNTLINAKVKSCAT 315
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ + E E+ G+ P ++ Y L++ ++ + +A G+ M +NR
Sbjct: 316 VSGLAIELLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYN 375
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
MI + E++F+KL G+ YN+LL A G E+ + +E K
Sbjct: 376 AMI-SVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVK 434
Query: 193 RGLFPELFRHNKLV 206
G + +N ++
Sbjct: 435 MGFGKDEMTYNTII 448
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 58/118 (49%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ + +LS M E+G + FN+V++ + F+ Y ++ P+E T +
Sbjct: 946 RDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTL 1005
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++YC +E ++KS G+ P Y ++A ++K +D A L +E+ +N
Sbjct: 1006 ITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSN 1063
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 89/197 (45%), Gaps = 1/197 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + ++ +G + ++ ++N+++ AF + G E+ EM K+ +E T
Sbjct: 385 GFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTY 444
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +Y G DE+ ++++KSSG P + Y +L+ + K+++ ++A ++ EM
Sbjct: 445 NTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLD 504
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I + E F+++ G Y+ +L+ +
Sbjct: 505 AGVKPTLHTYSALICA-YAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIK 563
Query: 182 RAARVLDEATKRGLFPE 198
+AA + E + G P+
Sbjct: 564 KAAALYQEMIEAGFTPD 580
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/217 (17%), Positives = 95/217 (43%), Gaps = 3/217 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y+ +AI + M G + +S N +++A GR E E++ + ++ +
Sbjct: 837 SGCYERARAIFNTMMREGPSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSS 896
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +L + AG + E ++ + +K++G P++ Y +++ + + R D +L EM
Sbjct: 897 ILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMG 956
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
Q+ ++K + +Q + ++ + G YN L+ ++C R
Sbjct: 957 EAGFKPDLQIFNSVLK-LYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLI-TMYCRDHR 1014
Query: 181 -ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E ++ + GL P+ + ++ + ++++
Sbjct: 1015 PEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYD 1051
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/212 (18%), Positives = 91/212 (42%), Gaps = 14/212 (6%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ I + ++G+A + +++N +I + + R EE + +M+ + +P T +
Sbjct: 980 FQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRS 1039
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ + L D+++E F+E++S+G Y +++ +Y S A LL+ M
Sbjct: 1040 MIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAG 1099
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I + T ++ + + + + L G L Y+++++A G +
Sbjct: 1100 IEP-NTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVIDAYLKKGDAKAG 1158
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
L E + + P+ HR+W
Sbjct: 1159 IEKLTEMKEAAIEPD-------------HRIW 1177
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 6/175 (3%)
Query: 29 VIEAFRQGGRFE--EAIKAYVEMEKVRCDPNERTL-EAVLSVYCFAGLVDESKEQFQEIK 85
+I+ G+ + ++ ++ VE + RC +R + A++ Y F+G + ++ F +
Sbjct: 792 IIDIIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMM 851
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
G P+V LL R + Y ++ E+ + I + + ++ F N
Sbjct: 852 REGPSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDL-KISKSSILLMLEAFAQAGNL 910
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV-LDEATKRGLFPEL 199
V+ V++ + GY M Y L+ L C R R RV L E + G P+L
Sbjct: 911 FEVQKVYNGMKAAGYFPTMHLYR-LMIGLLCRFKRVRDVRVMLSEMGEAGFKPDL 964
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 59/133 (44%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E ++S M ++GV +++A+I A+ + GR EA + + M + + +
Sbjct: 493 EEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVM 552
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L + + ++ +QE+ +G P Y ++L + N D ++ +
Sbjct: 553 LDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALVRENMGDVIERVVQDTKELGS 612
Query: 125 SNIHQVTGQMIKG 137
N H ++ ++KG
Sbjct: 613 MNPHDISSVLVKG 625
Score = 37.0 bits (84), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134
D + + F +++ +G+ PS Y +++VY + + A LL N I + VT +
Sbjct: 734 DIASQLFSDMRFNGVEPSECLYQSMVSVYCRIGFPETAQHLLYHAEKNDII-LDNVTVHI 792
Query: 135 IK--GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
I + WQ E + + L + + +NAL+ A G ERA + + +
Sbjct: 793 IDIIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMR 852
Query: 193 RGLFPELFRHNKLVWSVDV 211
G P + N L+ ++ V
Sbjct: 853 EGPSPTVESVNGLLQALIV 871
>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
Length = 864
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 103/228 (45%), Gaps = 9/228 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + I+ M ++G N +FN+++E + G EEA M + +PN
Sbjct: 522 GRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIY 581
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
++ YC G +D++ F+++ G+ P+ + Y ++L ++ R A + EM
Sbjct: 582 GTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIE 641
Query: 121 TNRISNIHQ---VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ +IH V G + + DE+N + +KL + +N ++ A++ +
Sbjct: 642 SGTTVSIHTYGVVLGGLCRNNCTDEANM-----LLEKLFAMNVKFDIITFNIVISAMFKV 696
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
G R+ A + D + GL P + ++ ++ ++ +E ISV
Sbjct: 697 GRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISV 744
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 98/206 (47%), Gaps = 3/206 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ ++I+ +M +SG+A + +++ +I+ + ++A + +M + PN T +++
Sbjct: 243 KAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLI 302
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSV-MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
Y +G+ +ES F+++ S G++P+V C + A++ K R ++A + D M
Sbjct: 303 HGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALF-KHGRTNEAKCIFDSMVLKGP 361
Query: 125 SNIHQVTGQMIKG-EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
M+ G +S V +F+ + +G +N L+ A G+ ++A
Sbjct: 362 KPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKA 421
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSV 209
+ ++ +G+ P+ ++ S+
Sbjct: 422 MLIFEDMQNKGMIPDTVTFATVISSL 447
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ I + M G+A N FN +I A+ + G ++A+ + +M+ P+ T V+
Sbjct: 385 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 444
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S C G +D++ +F + G+ PS Y L+ A L+ EM I
Sbjct: 445 SSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIP 504
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
I E + + D + G + +N+L+E +G E A
Sbjct: 505 PPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 564
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+LD G+ P + + LV
Sbjct: 565 LLDAMASIGIEPNCYIYGTLV 585
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/233 (19%), Positives = 95/233 (40%), Gaps = 9/233 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + I M G+ ++ +F VI + + GR ++A+ + M + P+E
Sbjct: 416 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 475
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
++ C G + ++KE E+ + I P V + ++ K R + ++D M
Sbjct: 476 GCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV 535
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
T + N+ VT + + N + + D + G Y L++ G
Sbjct: 536 QTGQRPNV--VTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGR 593
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ A V + +G+ P +++S+ +H +++ TA ++M E
Sbjct: 594 IDDALTVFRDMLHKGVKP-----TSVLYSIILHGLFQARRTTAAKKMFHEMIE 641
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++GV + ++N+++ + G+ +EAI +M +PN T ++++ C
Sbjct: 258 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLC 317
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + + LLD M N I H
Sbjct: 318 KNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHH 377
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I E Q + VF K+ G + Y +++ L G + A ++
Sbjct: 378 VFNILICAYAKQEKVDQAM-LVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQ 436
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
GL P + + L+ + W+
Sbjct: 437 MIDEGLTPNIIVYTSLIHGLCTCDKWD 463
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 96/215 (44%), Gaps = 21/215 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L M +G+ + FN +I A+ + + ++A+ + +M + +PN
Sbjct: 355 GALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCY 414
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ V C +G VD++ F+++ G+ P+++ Y L+ ++WD A L+ EM
Sbjct: 415 GTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLD 474
Query: 122 ----------NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
N I + H G++I+ E +FD + G + YN L+
Sbjct: 475 RGICLNTIFFNSIIDSHCKEGRVIES-----------EKLFDLMVRIGVKPDIITYNTLI 523
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ G + A ++L G+ P++ + L+
Sbjct: 524 DGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLI 558
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 1/181 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + ++ M + G+ N+ FN++I++ + GR E+ K + M ++ P+ T ++
Sbjct: 464 KAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C AG +DE+ + + S G+ P ++ Y L+ Y + +R DDA L EM ++ +S
Sbjct: 524 DGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVS 583
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+++G F E ++ + G L + YN +L L L + A R
Sbjct: 584 PNIITYNIILQGLFHTRRTAAAKE-LYVSITKSGTQLELSTYNIILHGLCKNNLTDEALR 642
Query: 186 V 186
+
Sbjct: 643 M 643
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 8/202 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---CDPNERTLEAVLS 66
+L RM+E G + S+N +++ R +EA++ M R P+ + VL+
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+ G D++ + E+ GILP V+ Y ++A K+ D A +L+ M N +
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMP 269
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYV--FDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
++ G S+ Q E + K+ +G + Y++L+ L G A
Sbjct: 270 DCMTYNSILHGYC---SSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ D TKRGL P++ + L+
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLL 348
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 1/184 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N V+ F + G ++A Y EM P+ T ++++ C A +D++ E +
Sbjct: 203 SYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTM 262
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+G++P M Y +L Y S + +A G L +M ++ + + VT +
Sbjct: 263 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEP-NVVTYSSLMNYLCKNGR 321
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+FD + G + Y LL+ G +LD + G+ P+ N
Sbjct: 322 STEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNI 381
Query: 205 LVWS 208
L+ +
Sbjct: 382 LICA 385
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 11/212 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV N ++++++ + GR EA K + M K +P+ T
Sbjct: 285 GQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATY 344
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P + +L+ YAK + D A + +M
Sbjct: 345 RTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQ 404
Query: 122 NRISNIHQVTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ ++ G +I G DD + F+++ EG + Y +L+ L
Sbjct: 405 HGLNPNVVCYGTVIDVLCKSGSVDDAMLY------FEQMIDEGLTPNIIVYTSLIHGLCT 458
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
++A ++ E RG+ N ++ S
Sbjct: 459 CDKWDKAEELILEMLDRGICLNTIFFNSIIDS 490
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 45/114 (39%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ M SGV+ N ++N +++ R A + YV + K T +L
Sbjct: 572 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
C L DE+ FQ + + + + +++ K R D+A L N
Sbjct: 632 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSAN 685
>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 669
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N+ +NA ++ R+++ + EM + C PNE T + S C GLVD + E
Sbjct: 311 NTVCYNAALKGLCMAERWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVV 370
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
++++ G P V+ Y L+ +++ R DDA LLD M + N ++
Sbjct: 371 EQMQKYGCRPDVVIYNTLINYFSEQGRVDDALMLLDSM----LCNPDTISFNAALKALCR 426
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
W VE + ++ E L +N L+++L GL A V ++ K P++
Sbjct: 427 TERWYDVEELIAQMLREDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVT 486
Query: 202 HNKLV 206
++ L+
Sbjct: 487 YSSLI 491
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+NAV++ + R+E+A + M + C PNE T +++ C G D + E F+++
Sbjct: 518 SYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFADRAIEVFKQM 577
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G P + Y L+ +++ R DDA LL M
Sbjct: 578 PEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTM 612
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 4/196 (2%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L+ ++ VA ++ ++N V++ ++E+A + EM + C PNE T + +C
Sbjct: 198 LNLIASMPVAPDTYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQ 257
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
GL+D + + + + G P V+ Y L+ +++ R DDA LL+ M + +
Sbjct: 258 NGLLDHAVQLLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTMLCKPNTVCYNA 317
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+KG E W+ V + ++ + ++ L L GL + A V+++
Sbjct: 318 A---LKGLCMAE-RWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQM 373
Query: 191 TKRGLFPELFRHNKLV 206
K G P++ +N L+
Sbjct: 374 QKYGCRPDVVIYNTLI 389
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 39/182 (21%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+FN +I++ Q G AI+ + +M K RC P+ T ++++ + GLV+ + E FQ +
Sbjct: 451 TFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQSM 510
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
P + Y +L ++ RW+DA L+ M + +++T
Sbjct: 511 PCK---PDIFSYNAVLKGLCRAARWEDAGELIANM-ARKDCPPNEIT------------- 553
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+N L+ +L G +RA V + + G P++F +N
Sbjct: 554 ----------------------FNILINSLCQKGFADRAIEVFKQMPEYGSTPDIFTYNA 591
Query: 205 LV 206
L+
Sbjct: 592 LI 593
>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
Length = 844
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 103/228 (45%), Gaps = 9/228 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + I+ M ++G N +FN+++E + G EEA M + +PN
Sbjct: 542 GRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIY 601
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
++ YC G +D++ F+++ G+ P+ + Y ++L ++ R A + EM
Sbjct: 602 GTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIE 661
Query: 121 TNRISNIHQ---VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ +IH V G + + DE+N + +KL + +N ++ A++ +
Sbjct: 662 SGTTVSIHTYGVVLGGLCRNNCTDEANM-----LLEKLFAMNVKFDIITFNIVISAMFKV 716
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
G R+ A + D + GL P + ++ ++ ++ +E ISV
Sbjct: 717 GRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISV 764
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 98/206 (47%), Gaps = 3/206 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ ++I+ +M +SG+A + +++ +I+ + ++A + +M + PN T +++
Sbjct: 263 KAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLI 322
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSV-MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
Y +G+ +ES F+++ S G++P+V C + A++ K R ++A + D M
Sbjct: 323 HGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALF-KHGRTNEAKCIFDSMVLKGP 381
Query: 125 SNIHQVTGQMIKG-EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
M+ G +S V +F+ + +G +N L+ A G+ ++A
Sbjct: 382 KPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKA 441
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSV 209
+ ++ +G+ P+ ++ S+
Sbjct: 442 MLIFEDMQNKGMIPDTVTFATVISSL 467
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ I + M G+A N FN +I A+ + G ++A+ + +M+ P+ T V+
Sbjct: 405 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 464
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S C G +D++ +F + G+ PS Y L+ A L+ EM I
Sbjct: 465 SSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIP 524
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
I E + + D + G + +N+L+E +G E A
Sbjct: 525 PPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 584
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+LD G+ P + + LV
Sbjct: 585 LLDAMASIGIEPNCYIYGTLV 605
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/233 (19%), Positives = 95/233 (40%), Gaps = 9/233 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + I M G+ ++ +F VI + + GR ++A+ + M + P+E
Sbjct: 436 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 495
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
++ C G + ++KE E+ + I P V + ++ K R + ++D M
Sbjct: 496 GCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV 555
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
T + N+ VT + + N + + D + G Y L++ G
Sbjct: 556 QTGQRPNV--VTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGR 613
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ A V + +G+ P +++S+ +H +++ TA ++M E
Sbjct: 614 IDDALTVFRDMLHKGVKP-----TSVLYSIILHGLFQARRTTAAKKMFHEMIE 661
>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
Length = 879
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
AI M SG+ + +N +IEAF + G + AI +M+K R P+ R ++ Y
Sbjct: 473 AIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGY 532
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG + + + ++ SG +P+VM Y L+ + ++ A +LD+M I+
Sbjct: 533 AVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNE 592
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+++G + EY F K+ G L + Y LL A G + A V
Sbjct: 593 HTYTIIMRGYAASGDIGKAFEY-FTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTR 651
Query: 189 EATKRGLFPELFRHNKLV 206
E + + + F +N L+
Sbjct: 652 EMSFQKIPRNTFIYNILI 669
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K L M SG ++NA+I + + + A+ +M PNE T
Sbjct: 535 AGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHT 594
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y +G + ++ E F +IK SG+ V Y LL KS R A + EM
Sbjct: 595 YTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMS 654
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I + +I G W+ E + ++ +G + Y + + A G
Sbjct: 655 FQKIPRNTFIYNILIDGWARRGDVWE-AEDLMKQMKEDGVPPNIHTYTSYINACCKAGDM 713
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+RA +V++E GL P + + L+
Sbjct: 714 QRAEKVIEEMVDVGLKPNVKTYTTLI 739
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + ++ +M E GV N ++ + I A + G + A K EM V PN +T ++
Sbjct: 680 EAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLI 739
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ L D + + F+E+K +G+ P Y C++ ++ +++
Sbjct: 740 KGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRAT 782
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RN+ +N +I+ + + G EA +M++ PN T
Sbjct: 641 GRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTY 700
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ ++ C AG + +++ +E+ G+ P+V Y L+ +A+ + D A +EM
Sbjct: 701 TSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEM 758
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/205 (17%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + ++ M E G+ D +++++ + + + + +++ P+ +
Sbjct: 361 GNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISY 420
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L++Y G V ++ +E++S GI + Y ML+ + + + +A+ + +EM
Sbjct: 421 GCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLR 480
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + +I+ F N + +K+ E R + ++E G +
Sbjct: 481 SGLQPDRAIYNLLIEA-FCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMK 539
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A LD + G P + +N L+
Sbjct: 540 SALDTLDLMRRSGCVPTVMTYNALI 564
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 102/218 (46%), Gaps = 10/218 (4%)
Query: 8 QAILSRMSE----SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLE 62
QA L M E G+A + ++ +I + + GR E+A+K + EM K P+
Sbjct: 164 QAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYN 223
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
A++ YC G +D + + +++ GI +V Y +L+ R DAY +L+EM N
Sbjct: 224 ALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKN 283
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
S +I G + E N + VF++++ +G Y +L+ G +
Sbjct: 284 GFSPDVFTYNILING-YCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQE 342
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSV----DVHRMWE 216
R+ + A K+G+ P++ +N L+ S D+ R +E
Sbjct: 343 TDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYE 380
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + + G+ + +NA+I + GG E A + EMEK R P++ T
Sbjct: 338 GQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTY 397
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G +DE++ E+ GI P ++ Y L++ Y+ DA + DEM
Sbjct: 398 NTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMD 457
Query: 122 NRISNIHQVTGQMIKG-----EFDDESNW 145
+ +I+G + DD N
Sbjct: 458 KGFNPTLMTYNALIQGLCKIRQGDDAENL 486
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 92/199 (46%), Gaps = 11/199 (5%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K+ + MS+ GV + ++ ++I F + G+ +E + + K P+ A+
Sbjct: 306 KKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNAL 365
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----- 119
++ +C G ++ + E E++ I P M Y L+ + R D+A L+DEM
Sbjct: 366 INSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGI 425
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +S ++G +KG+ D V D++ +G+ + YNAL++ L +
Sbjct: 426 QPDLVSYNTLISGYSMKGDIKDALR------VRDEMMDKGFNPTLMTYNALIQGLCKIRQ 479
Query: 180 RERAARVLDEATKRGLFPE 198
+ A ++ E +G+ P+
Sbjct: 480 GDDAENLMKEMVAKGITPD 498
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 21/203 (10%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G+A ++N ++ A R +A EM+K P+ T +++ YC G
Sbjct: 245 MVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGN 304
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL----------DEMHTNR 123
++ E F+E+ G+ + + Y L+ V+++ + + L D + N
Sbjct: 305 EKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNA 364
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ N H G M + ++ + + D + YN L+ LG + A
Sbjct: 365 LINSHCTGGDMERA-YEIMAEMEKKRIPPDDMT----------YNTLMRGFCLLGRLDEA 413
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
++DE TKRG+ P+L +N L+
Sbjct: 414 RTLIDEMTKRGIQPDLVSYNTLI 436
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 2/198 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ ++M E G N +I F + GR + A+ EM+ D + + +
Sbjct: 82 ALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCF 141
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G VD + + F E+K++G++P + Y ++ V K+NR D+A + ++M NR
Sbjct: 142 GKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCA 201
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
MI G + + + ++ +G + YN +L L G ++A R+ +
Sbjct: 202 YAYNTMIMG-YGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFE 260
Query: 189 EATKRGLFPELFRHNKLV 206
E KR P L +N ++
Sbjct: 261 E-MKRDAMPNLPTYNIII 277
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 89/199 (44%), Gaps = 36/199 (18%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+A+ + G ++ S++ +I + + G E + Y M+ C + R V+
Sbjct: 430 RALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDG 489
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+C +G V+++ + +E+K+ G P+V+ Y ++ AK +R D+AY L +E +N I +
Sbjct: 490 FCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIE-L 548
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+QV Y++L++ +G + A V+
Sbjct: 549 NQV-----------------------------------IYSSLIDGFGKVGRVDEAYLVM 573
Query: 188 DEATKRGLFPELFRHNKLV 206
+E ++GL P ++ N L+
Sbjct: 574 EEMMQKGLTPNVYTWNCLL 592
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 9/192 (4%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N ++N +I + G E A K M++ PN RT+ ++ C A +DE+ F
Sbjct: 269 NLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIF 328
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQVTGQMIKGEFD 140
+ + P +C L+ K R DDAY + + M ++I N+ V +I+ F
Sbjct: 329 EGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNV-VVYTSLIRNFFK 387
Query: 141 ---DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
E +M + ++ G + N ++ ++ G E+ + +E RG P
Sbjct: 388 CDRKEDGHKM----YKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLP 443
Query: 198 ELFRHNKLVWSV 209
+ ++ L+ S+
Sbjct: 444 DTRSYSILIHSL 455
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E + M + G ++ ++N VI+ F + G+ +A + EM+ + P T
Sbjct: 458 AGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVT 517
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+V+ +DE+ F+E KS+GI + + Y L+ + K R D+AY +++EM
Sbjct: 518 YGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEM 576
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 1/178 (0%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+G+ N ++++I+ F + GR +EA EM + PN T +L A ++E
Sbjct: 544 NGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINE 603
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136
+ FQ +K P+ + YC+L+ K +++ A+ EM + MI
Sbjct: 604 ALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMIS 663
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
G N +F++ G YNA++E L A ++ +E +G
Sbjct: 664 G-LAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKG 720
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 3/186 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ M + G+ N ++N +++ + EA+ + M+ ++C PN+ T
Sbjct: 564 GRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITY 623
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C +++ +QE++ G+ P+ + Y +++ AKS A L +
Sbjct: 624 CILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRA 683
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEY-VFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ MI+G +N + Y +F++ +G + + ALL+AL
Sbjct: 684 SGGIPDSASYNAMIEGL--SIANRALDAYQLFEETRLKGCSIHTKTCVALLDALHKAECL 741
Query: 181 ERAARV 186
E+AA V
Sbjct: 742 EQAAIV 747
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 73/161 (45%), Gaps = 1/161 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E+G+ N + N +I+ + + +EA + M+ C P+ T +++ G
Sbjct: 296 MKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGR 355
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
VD++ ++ + + +P+V+ Y L+ + K +R +D + + EM + S +
Sbjct: 356 VDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNT 415
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ F + +F+++ G+ R Y+ L+ +L
Sbjct: 416 YMDCVF-KAGETEKGRALFEEIKARGFLPDTRSYSILIHSL 455
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + ++S M++ + + +FNA+I+A + GR EA + Y EM + DP+ T
Sbjct: 235 GRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTY 294
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C +DE+++ F + S G P V+ Y +L+ Y KS + + L EM
Sbjct: 295 SLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQ 354
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + VT ++ + + E +F + G + YN LL L G E
Sbjct: 355 RGVVR-NTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIE 413
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A +L + K G+ ++ +N ++
Sbjct: 414 KALVILADMQKSGMDADIVTYNIII 438
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + M G + +++ +I + + + E +K + EM + N T ++
Sbjct: 309 EAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLI 368
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
YC AG ++ ++E F+ + G+ P+++ Y +LL + + + A +L +M + +
Sbjct: 369 QGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMD 428
Query: 126 ------NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
NI + G GE D W + + LN +G + Y A++ L+ GL
Sbjct: 429 ADIVTYNI-IIRGMCKAGEVADA--WDL----YCSLNLKGLTPDIWTYTAMMLGLYKKGL 481
Query: 180 RERAARVLDEATKRGLFPE 198
R A + + + G+ P
Sbjct: 482 RGEADALFRKMKEDGILPN 500
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 84/198 (42%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ L +M + G + +F +++ F +G R +A+ + M ++ +PN ++
Sbjct: 137 SFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGL 196
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C + VD + + ++ GI P + Y L++ S RWDDA ++ M T R
Sbjct: 197 CKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCM-TKREIYPD 255
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
T + E E +++++ + Y+ L+ L + A ++
Sbjct: 256 VFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFG 315
Query: 189 EATKRGLFPELFRHNKLV 206
+G FP++ ++ L+
Sbjct: 316 FMVSKGCFPDVVTYSILI 333
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 93/202 (46%), Gaps = 11/202 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M G+ N + N ++ F + + A+ +M K+ +P+ T ++L+ +C
Sbjct: 106 QMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGD 165
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-----SNI 127
+ ++ F + G P+V+ Y ++ KS + D+A LL+ M + I +
Sbjct: 166 RIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYN 225
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
++G G +DD + +MV + + E Y F NAL++A G A +
Sbjct: 226 SLISGLCNSGRWDDAT--RMVSCMTKR---EIYPDVFTF-NALIDACVKEGRISEAEELY 279
Query: 188 DEATKRGLFPELFRHNKLVWSV 209
+E +R L P++ ++ L++ +
Sbjct: 280 EEMIRRSLDPDIVTYSLLIYGL 301
>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 675
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L +M + G N ++N ++ G E+A + EM ++ + + T
Sbjct: 204 GKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTY 263
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ ++ YC G +DE+ +E+ S G +P+++ Y ++ K R DA LLD M
Sbjct: 264 DPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVN 323
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G + N +F +L G + YN L++ L +G +
Sbjct: 324 KNLMPDLVSYNTLIYG-YTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLD 382
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+ DE K G P++F LV
Sbjct: 383 VAMRLKDEMIKHGPDPDVFTFTILV 407
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 85/194 (43%), Gaps = 36/194 (18%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G+ ++N ++++F + G+ +EA++ ++M+K+ C PN+ T +++ +G
Sbjct: 181 MVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGE 240
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++++KE QE+ G+ S Y L+ Y + + D+A L +EM +
Sbjct: 241 LEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLS------------ 288
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
G + YN ++ L G A ++LD +
Sbjct: 289 ------------------------RGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNK 324
Query: 194 GLFPELFRHNKLVW 207
L P+L +N L++
Sbjct: 325 NLMPDLVSYNTLIY 338
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 1/145 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE ++ +M +G+ + ++ ++I A G +A ++EM P+ T
Sbjct: 484 GNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTY 543
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G + + F E+ G+ P+V+ Y L+ K + D AY EM
Sbjct: 544 TVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQA 603
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQ 146
IS ++ T ++ E + +WQ
Sbjct: 604 KGISP-NKYTYTILINENCNLGHWQ 627
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 1/197 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G + ++N I+ + G +EA + +M P+ T +++ + AG
Sbjct: 461 MLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGH 520
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ +++ F E+ S GI PSV+ Y +L+ YA R A EMH +
Sbjct: 521 LRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNA 580
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G Q ++ F ++ +G Y L+ LG + A R+ + R
Sbjct: 581 LINGLCKVRKMDQAYKF-FTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDR 639
Query: 194 GLFPELFRHNKLVWSVD 210
+ P+ H+ L+ ++
Sbjct: 640 EIQPDSCTHSALLKHLN 656
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 57/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +A+ M G+ + ++ +I ++ GR + AI + EM + PN T
Sbjct: 518 AGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVIT 577
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++ C +D++ + F E+++ GI P+ Y +L+ W +A L +M
Sbjct: 578 YNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDM 636
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 11/212 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +L M + + S+N +I + + G EA + E+ P+ T
Sbjct: 309 GRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTY 368
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
++ C G +D + E+ G P V + +L+ + K A L DEM
Sbjct: 369 NTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLN 428
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+R + I ++ G++ G D + M E + + G+ + YN ++ L
Sbjct: 429 RGLQPDRFAYITRIVGELKLG--DPSKAFGMQEEMLAR----GFPPDLITYNVFIDGLHK 482
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
LG + A+ ++ + GL P+ + ++ +
Sbjct: 483 LGNLKEASELVKKMLYNGLVPDHVTYTSIIHA 514
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G+ + ++N +I+ + G + A++ EM K DP+ T ++ +C G + +
Sbjct: 360 GLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMA 419
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
KE F E+ + G+ P Y + K A+G+ +EM R +T +
Sbjct: 420 KELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEM-LARGFPPDLITYNVFID 478
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
N + + K+ G Y +++ A G +A V E +G+FP
Sbjct: 479 GLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFP 538
Query: 198 ELFRHNKLVWSVDV 211
+ + L+ S V
Sbjct: 539 SVVTYTVLIHSYAV 552
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 6/206 (2%)
Query: 8 QAILSRMSE----SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLE 62
QA L M E G+A N ++ VI + + GR +EA+K + EM K P
Sbjct: 531 QAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYN 590
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
A++ YC G +D + + G+ +V Y +L+ R +AY L++EM
Sbjct: 591 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 650
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
++ +I G E N + +F+ ++ G + Y AL+ AL G +
Sbjct: 651 GLAPDVFTYNILINGHC-KEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQE 709
Query: 183 AARVLDEATKRGLFPELFRHNKLVWS 208
++ DEA +RG+ P+L +N L+ S
Sbjct: 710 TDKLFDEAVRRGIRPDLVLYNALINS 735
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 21/204 (10%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM E GVA ++N ++ A GR EA + EM P+ T +++ +C G
Sbjct: 611 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 670
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE----------MHTN 122
V ++ E F+ + G+ +V+ Y L+ +K + + L DE + N
Sbjct: 671 NVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 730
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ N H +G + + F+ + D + YN L+ L LG +
Sbjct: 731 ALINSHSTSGNIDRA-FEIMGEMEKKRIAPDDVT----------YNTLMRGLCLLGRVDE 779
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A +++DE T+RG+ P+L +N L+
Sbjct: 780 ARKLIDEMTERGIQPDLVTYNTLI 803
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 5/185 (2%)
Query: 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ +FN ++ G+ A++ +M + PN T V++ +C G V + + +
Sbjct: 483 TTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMR 538
Query: 83 EIKS-SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
E++ GI P+ Y +++ + K R D+A + DEM T V + G + D
Sbjct: 539 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 598
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+ D++ G + + YN L+ AL+ G A +++E +GL P++F
Sbjct: 599 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 658
Query: 202 HNKLV 206
+N L+
Sbjct: 659 YNILI 663
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 7/155 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + G+ + +NA+I + G + A + EMEK R P++ T
Sbjct: 705 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 764
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G VDE+++ E+ GI P ++ Y L++ Y+ DA + +EM
Sbjct: 765 NTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMN 824
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNW--QMVE 149
+ +I+ G+ DD N +MVE
Sbjct: 825 KGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVE 859
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 11/202 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ I MS GV ++ A+I A + G+ +E K + E + P+
Sbjct: 670 GNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLY 729
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
A+++ + +G +D + E E++ I P + Y L+ R D+A L+DEM
Sbjct: 730 NALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTE 789
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ ++ ++G +KG+ D + +++ +G+ + YNAL++ L
Sbjct: 790 RGIQPDLVTYNTLISGYSMKGDVKD------ALRIRNEMMNKGFNPTLLTYNALIQGLCK 843
Query: 177 LGLRERAARVLDEATKRGLFPE 198
G + A ++ E + G+ P+
Sbjct: 844 NGQGDDAENMVKEMVENGITPD 865
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 15/216 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M E G+ N +FN+++ + G+ E+A K + EM + P+ + ++ YC
Sbjct: 247 LVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYC 306
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
AG E+ F E+ GI+P V+ + L+ V K+ + A L+ +M N +
Sbjct: 307 KAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEV 366
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + G KG DD + V C + YNAL+ +G + A
Sbjct: 367 TFTALIDGFCKKGFLDDA-----LLAVRGMKQCR-IKPSVVCYNALINGYCMVGRMDEAR 420
Query: 185 RVLDEATKRGLFPELFRHNKLVWS----VDVHRMWE 216
+L E +GL P++ ++ ++ + D H +E
Sbjct: 421 ELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE 456
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 92/197 (46%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ +M E G+ N +F A+I+ F + G ++A+ A M++ R P+ A+++ YC
Sbjct: 352 LVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYC 411
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +DE++E E+++ G+ P V+ Y +++ Y K+ A+ L +M +
Sbjct: 412 MVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAI 471
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I+ E +F + G Y +L++ G E A + D+
Sbjct: 472 TYSSLIR-VLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDK 530
Query: 190 ATKRGLFPELFRHNKLV 206
K G+ P++ ++ L+
Sbjct: 531 MVKAGVLPDVVTYSVLI 547
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 15/230 (6%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E ++ + M++ G+ + +F ++I + G E A+ +M + NE T
Sbjct: 308 AGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVT 367
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ +C G +D++ + +K I PSV+CY L+ Y R D+A LL EM
Sbjct: 368 FTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEME 427
Query: 121 TNRISNIHQVTGQMIKGEF----DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ VT I + D S +++ + + +K G Y++L+ L C
Sbjct: 428 AKGLKP-DVVTYSTIISAYCKNCDTHSAFELNQQMLEK----GVLPDAITYSSLIRVL-C 481
Query: 177 LGLRERAARVL-DEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
R A VL K GL P+ F + L +D H EG +A+S+
Sbjct: 482 GEKRLSDAHVLFKNMIKLGLQPDEFTYTSL---IDGH-CKEGNVESALSL 527
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 1/182 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M GVA N ++N ++ A G +EA+ +M C PN T +++ + AG
Sbjct: 181 MLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGE 240
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
VD ++ ++ G+ P+++ + ++ K+ + +DA + DEM ++ V+
Sbjct: 241 VDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAP-DGVSYN 299
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ G + VF ++ +G + + +L+ + G ERA ++ + +R
Sbjct: 300 TLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRER 359
Query: 194 GL 195
GL
Sbjct: 360 GL 361
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 57/108 (52%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M E GV ++ +++++I R +A + M K+ P+E T +++ +C G
Sbjct: 460 QMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEG 519
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ + ++ +G+LP V+ Y +L+ +KS R +A LL +++
Sbjct: 520 NVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLY 567
>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Brachypodium distachyon]
Length = 1285
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 113/276 (40%), Gaps = 30/276 (10%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+++ + + + G N ++ +++ +R +A + M++ +P T+
Sbjct: 849 LWEQAEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATMH 908
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ Y AG DE+++ +KSS + S + Y + Y K+ ++ L EM +
Sbjct: 909 ILMTSYGTAGHPDEAEKVLNSLKSSSLEVSTLPYSTVFNAYLKNGDYNLGITKLLEMKAD 968
Query: 123 RISNIHQVTGQMIKG--------------------EFD---------DESNWQMVEYVFD 153
+ HQV I+ EFD S V +
Sbjct: 969 GVKPDHQVWTCFIRAASLCERTADAILLLNSLRDCEFDLPIRLLTERTSSLLTEVSNFLE 1028
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVH 212
+L+ + F NAL + LW R A+ V A + ++ +FR + W D
Sbjct: 1029 ELDALEDSAALNFVNALEDLLWAFECRATASYVFQLAVDKSIYRHNVFRVVEKDWGADFR 1088
Query: 213 RMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
++ G A TA+++WL++M + + G + V+V
Sbjct: 1089 KLSAGAALTALTLWLDQMQDASLQGSPESPKSIVLV 1124
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 96/207 (46%), Gaps = 9/207 (4%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E I + M E+G N + ++I + R+ + VEME+ +P+ L +L
Sbjct: 712 EVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERAGFEPDLTILNTLL 771
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----T 121
+Y G D++ E + I +G+ P+ Y L+ +Y+++ R ++ + LL+EM T
Sbjct: 772 LMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLT 831
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ + + K + W+ E +F+++ +GY L Y+ L++
Sbjct: 832 PKLESYKSLLAASGKAKL-----WEQAEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHS 886
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
+A ++L + G+ P + + L+ S
Sbjct: 887 KAEQLLASMKEDGIEPTIATMHILMTS 913
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 13/222 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GLY+ +A+ M E G DS N ++ A GR +E E++ + ++ T
Sbjct: 637 SGLYEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKST 696
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +L + AG + E + + +K +G LP++ Y ++++ ++ R+ D ++ EM
Sbjct: 697 VILMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEME 756
Query: 121 TNRISNIHQVTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
+ ++ G FD + VE V+ + G YN L+ ++
Sbjct: 757 RAGFEPDLTILNTLLLMYTGNGNFD-----KTVE-VYHSILEAGLEPNEDTYNTLI-VMY 809
Query: 176 CLGLR-ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
LR E +L+E K+GL P+L + L+ + ++WE
Sbjct: 810 SRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWE 851
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + + G+ + ++N +I A QG ++A+ + EM C P+ T A++SV+
Sbjct: 122 LLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHG 181
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +++ F+E+ G P + Y LL +AK D + +E+
Sbjct: 182 RCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGI 241
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
MI + + ++D++ G Y L+++L + A +VL+E
Sbjct: 242 TYNTMIH-MYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEE 300
Query: 190 ATKRGLFPELFRHNKLV 206
GL P L + L+
Sbjct: 301 MADAGLKPTLVTFSALI 317
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 64/129 (49%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M+++G+ +F+A+I A+ +GGR EEA++ + M P+ +L +
Sbjct: 297 VLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIA 356
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G + + +Q + + G P Y ++LA AK N +D+ ++ +M N
Sbjct: 357 RSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEIEAVVQDMEVVCQMNPQL 416
Query: 130 VTGQMIKGE 138
V+ +IK E
Sbjct: 417 VSSILIKAE 425
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 81/192 (42%), Gaps = 1/192 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y++ + ++ M +G + N ++ + G F++ ++ Y + + +PNE T
Sbjct: 745 YRDVELMVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNT 804
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ +Y +E E+ G+ P + Y LLA K+ W+ A L +E+ + +
Sbjct: 805 LIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRS-K 863
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+++ M+ + D N E + + +G + + L+ + G + A
Sbjct: 864 GYRLNRSLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATMHILMTSYGTAGHPDEA 923
Query: 184 ARVLDEATKRGL 195
+VL+ L
Sbjct: 924 EKVLNSLKSSSL 935
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 51/103 (49%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+G ++ ++N +I + + GR + A+ Y EM + C P+ T ++ + +
Sbjct: 234 AGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISD 293
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ + +E+ +G+ P+++ + L+ YAK R ++A M
Sbjct: 294 AGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHM 336
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 85/199 (42%), Gaps = 28/199 (14%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK--EQFQE 83
FNA++ + + GRF++ + M +P+ + +++ +G + + E
Sbjct: 66 FNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAFDLLLE 125
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----------NRISNIHQVTGQ 133
++ G+ P V+ Y L++ ++ + DDA + +EM N + ++H G+
Sbjct: 126 VRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGK 185
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
Q E +F +L +G+ YN+LL A G + RV +E +
Sbjct: 186 A-----------QDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRA 234
Query: 194 GLFPELFRHNKLVWSVDVH 212
G F+ + + ++ +H
Sbjct: 235 G-----FKKDGITYNTMIH 248
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 6/166 (3%)
Query: 38 RFEEAIKAYVEMEKVRCDP---NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM 94
+ A++ Y M+ ++C + E +++ A E+ + F +++ GI PS
Sbjct: 496 KIAAAMQEYSSMQMLKCGSFGQDCNLYEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRK 555
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFD 153
Y +++ Y K + A+ L+DE + IS NI MI+ + WQ E
Sbjct: 556 IYESMISAYCKLGFPETAHQLMDEAVQSGISLNILSSRVTMIEA-YGKIKLWQHAENFVK 614
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
L E + R +NAL+ A GL E A V D ++G P +
Sbjct: 615 GLKQEP-SIDRRIWNALIHAYAESGLYEHARAVFDIMIEKGPLPTI 659
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 96/197 (48%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M + + N +++A+++AF + G+ EA + + EM ++ DP+ T ++++ C
Sbjct: 247 LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLC 306
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+DE+ + F + S G L V+ Y L+ + K+ R +D L EM + +
Sbjct: 307 LHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTV 366
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I+G F + E+ F +++ G + YN LL L G E+A + ++
Sbjct: 367 TYNTLIQGFFQAGDVDKAQEF-FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 425
Query: 190 ATKRGLFPELFRHNKLV 206
KR + ++ + ++
Sbjct: 426 MQKREMDLDIVTYTTVI 442
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 94/199 (47%), Gaps = 3/199 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+IL +M + G + + +++ F + R +A+ +M ++ P+ A++
Sbjct: 141 SILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSL 200
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C V+++ + F+EI+ GI P+V+ Y L+ S+RW DA LL +M +I+ +
Sbjct: 201 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP-N 259
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVL 187
+T + F + +F+++ + Y++L+ L CL R + A ++
Sbjct: 260 VITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGL-CLHDRIDEANQMF 318
Query: 188 DEATKRGLFPELFRHNKLV 206
D +G ++ +N L+
Sbjct: 319 DLMVSKGCLADVVSYNTLI 337
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
MS+ G+ N+ ++N +I+ F Q G ++A + + +M+ P+ T +L C G
Sbjct: 356 MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 415
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL-----LDEMHTNRISNIH 128
++++ F++++ + ++ Y ++ K+ + ++A+ L L + + ++
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTT 475
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159
++G KG + VE ++ K+ EG
Sbjct: 476 MMSGLCTKGLLHE------VEALYTKMKQEG 500
>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
Japonica Group]
gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
Japonica Group]
gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
Length = 665
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 95/210 (45%), Gaps = 8/210 (3%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
SRM + N +NA+I F + G E+A K M++ C+P+ T +L+ YC
Sbjct: 359 SRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSI 418
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL-DEMHTNRISNIHQV 130
G+ D+++ ++++ SG+ P Y +LL K+++ D A+ + D M +I V
Sbjct: 419 GMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDI--V 476
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+ ++ F +F ++ +G Y L+ L+ +G A + D+
Sbjct: 477 SCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQM 536
Query: 191 TKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
+ P N V+++ +H + + G +
Sbjct: 537 LNTKIVP-----NVNVYNIMLHNLCKVGHF 561
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 1/177 (0%)
Query: 30 IEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGI 89
I A Q R E + +M+K C P+ + C + ++ + +++ G
Sbjct: 237 ITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGT 296
Query: 90 LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVE 149
P V+ Y +++ R+ +A GL +EM + G +I G ++ + E
Sbjct: 297 GPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFE 356
Query: 150 YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L + L + YNAL+ W G E+A + + + G P++ +N L+
Sbjct: 357 LASRMLTLD-IQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILL 412
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +K Q I +M++ V+ ++ +FN +I + R EA+ + EM +P+ T
Sbjct: 559 GHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTF 618
Query: 62 EAVLSVYCFAGLVDESK 78
++S GL+DE K
Sbjct: 619 RYIIS-----GLLDEGK 630
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 86/202 (42%), Gaps = 7/202 (3%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ +L+ M + G + + N + R +A++ +M P+ T V+S
Sbjct: 250 EELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSC 309
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C E+ ++E+ G+ P V+ L+ K+ + D+A+ L M T I
Sbjct: 310 LCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLN 369
Query: 128 HQVTGQMIKGEF---DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G + E ++ V ++ + CE + YN LL +G+ ++A
Sbjct: 370 VSIYNALISGFWRAGSIEKAYKTVSFM-QRNGCEP---DVVTYNILLNHYCSIGMTDKAE 425
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ + G+ P+ + +N L+
Sbjct: 426 NLIRKMEMSGVNPDRYSYNILL 447
>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
Length = 665
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 95/210 (45%), Gaps = 8/210 (3%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
SRM + N +NA+I F + G E+A K M++ C+P+ T +L+ YC
Sbjct: 359 SRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSI 418
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL-DEMHTNRISNIHQV 130
G+ D+++ ++++ SG+ P Y +LL K+++ D A+ + D M +I V
Sbjct: 419 GMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDI--V 476
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+ ++ F +F ++ +G Y L+ L+ +G A + D+
Sbjct: 477 SCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQM 536
Query: 191 TKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
+ P N V+++ +H + + G +
Sbjct: 537 LNTKIVP-----NVNVYNIMLHNLCKVGHF 561
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 1/177 (0%)
Query: 30 IEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGI 89
I A Q R E + +M+K C P+ + C + ++ + +++ G
Sbjct: 237 ITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGT 296
Query: 90 LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVE 149
P V+ Y +++ R+ +A GL +EM + G +I G ++ + E
Sbjct: 297 GPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFE 356
Query: 150 YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L + L + YNAL+ W G E+A + + + G P++ +N L+
Sbjct: 357 LASRMLTLD-IQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILL 412
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +K Q I +M++ V+ ++ +FN +I + R EA+ + EM +P+ T
Sbjct: 559 GHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTF 618
Query: 62 EAVLSVYCFAGLVDESK 78
++S GL+DE K
Sbjct: 619 RYIIS-----GLLDEGK 630
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 86/202 (42%), Gaps = 7/202 (3%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ +L+ M + G + + N + R +A++ +M P+ T V+S
Sbjct: 250 EELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSC 309
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C E+ ++E+ G+ P V+ L+ K+ + D+A+ L M T I
Sbjct: 310 LCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLN 369
Query: 128 HQVTGQMIKGEF---DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G + E ++ V ++ + CE + YN LL +G+ ++A
Sbjct: 370 VSIYNALISGFWRAGSIEKAYKTVSFM-QRNGCEP---DVVTYNILLNHYCSIGMTDKAE 425
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ + G+ P+ + +N L+
Sbjct: 426 NLIRKMEMSGVNPDRYSYNILL 447
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 94/209 (44%), Gaps = 11/209 (5%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ ++IL MS+ GV + S+N +I+ F + + +EA+ + EM P+ T +++
Sbjct: 320 KAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLI 379
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI- 124
C G + + + E+ G+ P ++ Y +L K+++ D A LL ++ I
Sbjct: 380 DGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIR 439
Query: 125 SNIHQVT----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N++ T G G +D N +F+ L +GY + + Y ++ GL
Sbjct: 440 PNMYTYTILIDGLCKGGRLEDAHN------IFEDLLVKGYNITVNTYTVMIHGFCNKGLF 493
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ A +L + P+ + ++ S+
Sbjct: 494 DEALALLSKMKDNSCIPDAVTYEIIIRSL 522
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 93/200 (46%), Gaps = 11/200 (5%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
S M G++ N +++A+I F G+ ++AI + +M P+ T ++ +C
Sbjct: 221 SEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKD 280
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131
G + E K F + GI P+V+ YC L+ Y + A +L M ++ Q
Sbjct: 281 GKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSY 340
Query: 132 GQMIKG-----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+I G + D+ N +F +++ + + YN+L++ L LG A ++
Sbjct: 341 NILIDGFCKIKKVDEAMN------LFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKL 394
Query: 187 LDEATKRGLFPELFRHNKLV 206
+DE RG+ P++ ++ ++
Sbjct: 395 VDEMHDRGVPPDIITYSSIL 414
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 102/237 (43%), Gaps = 14/237 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + ++M + + +FN +++ F + G+ +E + M K PN T
Sbjct: 246 GQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTY 305
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC V+++K + G+ P + Y +L+ + K + D+A L EMH
Sbjct: 306 CSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHH 365
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEY---VFDKLNCEGYGLGMRFYNALLEALWCLG 178
I +I G + Y + D+++ G + Y+++L+AL
Sbjct: 366 KHIIPDVVTYNSLIDG----LCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNH 421
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSV-------DVHRMWEGGAYTAISVWLN 228
++A +L + +G+ P ++ + L+ + D H ++E ++ +N
Sbjct: 422 QVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVN 478
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 1/151 (0%)
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
PN ++ C V+++ + + E+ S GI P+V+ Y L++ + + DA L
Sbjct: 195 PNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDL 254
Query: 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
++M I ++ G F + + + VF + +G + Y +L++
Sbjct: 255 FNKMILENIKPDVYTFNILVDG-FCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYC 313
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +A +L ++RG+ P++ +N L+
Sbjct: 314 LVKEVNKAKSILYTMSQRGVNPDIQSYNILI 344
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 13/249 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERT 60
G E A+L RM E G+ ++ +++ + G A+ +ME+V PN
Sbjct: 198 GRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVI 257
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ C G +++ F E++ GI P + Y ++ + S RW DA LL EM
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+IS VT + F E + E ++D++ G Y+++++
Sbjct: 318 ERKISP-DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRL 376
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV------WSVD-----VHRMWEGGAYTAISVWLNK 229
+ A + +G P L N L+ +D +H M E G + +
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436
Query: 230 MYEMFMMGE 238
++ +++G+
Sbjct: 437 IHGFYLVGD 445
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 92/212 (43%), Gaps = 15/212 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + Q + + M E G+ + ++N++I F GR+ +A + EM + + P+ T
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ + G E++E + E+ GI+P+ + Y ++ + K NR D A + M T
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 122 NRISNIHQVTGQMIKG-----EFDD--ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
S +I G DD E +M E G YN L+
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE--------TGLVADTTTYNTLIHGF 440
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +G A +L E GL P++ + L+
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 76/182 (41%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SF +I+ F + A+ + ++ K+ P+ T +L C V E+ F ++
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ P+V+ + L+ + R +A LLD M + + G ++ G
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + Y+A++++L G A + E ++G+FP+LF +N
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295
Query: 205 LV 206
++
Sbjct: 296 MI 297
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + + M G+ ++ +++++I+ + R +EA + + M PN T
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ YC AG VD+ E F E+ GI+ + + Y L+ + K + A + EM
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+GV + ++N +I G+F EA + Y EM P+ T +++ C +DE
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ + F + S P+V+ + L+ Y K+ R DD L EM
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 2/202 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +M E+ N +F ++ + GR EA+ M + P + T ++
Sbjct: 167 EALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIV 226
Query: 66 SVYCFAGLVDESKEQFQEIKS-SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
C G + ++++ S I+P+V+ Y ++ K R DA L EM I
Sbjct: 227 DGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
MI G F W E + ++ + YNAL+ A G A
Sbjct: 287 FPDLFTYNSMIVG-FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ DE RG+ P ++ ++
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMI 367
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-----------PNE 58
+L M SG+ + + + +++ G+ ++A++ + M+K + D P+
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+T ++S G E++E ++E+ GI+P + Y ++ K +R D+A + D
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571
Query: 119 MHT-----NRISNIHQVTGQMIKGEFDD 141
M + N ++ + G G DD
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDD 599
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 25/193 (12%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+ G + N +FN +I+ + R ++ ++ EM + + T ++ + G
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ + + QE+ SSG+ P ++ LL + + DA + M Q
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVM-------------Q 492
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
K + D + VE ++ YN L+ L G A + +E R
Sbjct: 493 KSKKDLDASHPFNGVEP------------DVQTYNILISGLINEGKFLEAEELYEEMPHR 540
Query: 194 GLFPELFRHNKLV 206
G+ P+ ++ ++
Sbjct: 541 GIVPDTITYSSMI 553
>gi|11079485|gb|AAG29197.1|AC078898_7 hypothetical protein [Arabidopsis thaliana]
Length = 441
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M+++G RN S+ +I + + +EA+ V+M+ C PN RT ++ C
Sbjct: 212 VFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALC 271
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI----- 124
+G E+ F+++ SGI P Y +L+ + + D+A GLL+ M N +
Sbjct: 272 GSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVI 331
Query: 125 -----------SNIHQVTGQMIKGEFDDESNWQMVEYVFDKL---NC-EGYGLGMRFYNA 169
N+H+ G + K E N ++ L C G L + N
Sbjct: 332 TYNALIKGFCKKNVHKAMGLLSKML---EQNLVPDLITYNTLIAGQCSSGISLSEKICNG 388
Query: 170 LLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNK 229
LL + L E AA+ KR E R +K + VD+ M G +++ V LN+
Sbjct: 389 LLRCYYKLQKYEEAAK----EKKR----ESTRFSKNCFDVDIAMMKSLGK-SSLMVCLNR 439
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 14/215 (6%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N ++ + + G EE + Y EM + P+ T +++ YC G V E+K+ +
Sbjct: 123 YNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLI 182
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD----D 141
+G P Y + + + D A+ + EM N Q+I G F+ D
Sbjct: 183 QAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKID 242
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
E+ +V+ D NC +R Y L++AL G + A + + ++ G+ P+
Sbjct: 243 EALSLLVKMKDD--NC---CPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPD--- 294
Query: 202 HNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMM 236
+++V + G S L M E +M
Sbjct: 295 --DCMYTVLIQSFCSGDTLDEASGLLEHMLENGLM 327
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 97/211 (45%), Gaps = 13/211 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVE-MEKVRCDPNERT 60
GL +E + + + M E V+ + +FN ++ + + G EA K YV + + CDP+ T
Sbjct: 134 GLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEA-KQYVTWLIQAGCDPDYFT 192
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ ++ +C VD + + F+E+ +G + + Y L+ ++ + D+A LL +M
Sbjct: 193 YTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMK 252
Query: 121 -TNRISNIHQVTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
N N+ T + G+ + N +F +++ G Y L+++
Sbjct: 253 DDNCCPNVRTYTVLIDALCGSGQKSEAMN------LFKQMSESGIKPDDCMYTVLIQSFC 306
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ A+ +L+ + GL P + +N L+
Sbjct: 307 SGDTLDEASGLLEHMLENGLMPNVITYNALI 337
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + +M E G+ N+ ++N +I+ + G E A EM K P+ T
Sbjct: 257 GRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTY 316
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G + E+ + +E++ GI+P + Y +L+ Y++ A+ L +EM +
Sbjct: 317 NLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLS 376
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I H VT + + + + +F+K+ +G + +NA+++ G E
Sbjct: 377 KGIEPTH-VTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVE 435
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA +L E ++ + P+ N L+
Sbjct: 436 RAFMLLKEMDRKSVPPDEVTFNTLM 460
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + ++ + GV+ + FNA+I+ G E A EM++ P+E T +
Sbjct: 400 KEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTL 459
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ C G V+E++ E+K GI P + Y L++ Y + DA+ + DEM
Sbjct: 460 MQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEM 514
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131
G + +++E ++ G P+V+ Y ++ Y+ + A +LD M I
Sbjct: 187 GKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY 246
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
G +I G E + +FDK+ G YN L++ G ERA DE
Sbjct: 247 GSLISG-MCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 305
Query: 192 KRGLFPELFRHNKLVWSV 209
K+G+ P + +N LV ++
Sbjct: 306 KKGIMPSVSTYNLLVHAL 323
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 13/249 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERT 60
G E A+L RM E G+ ++ +++ + G A+ +ME+V PN
Sbjct: 198 GRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVI 257
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ C G +++ F E++ GI P + Y ++ + S RW DA LL EM
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+IS VT + F E + E ++D++ G Y+++++
Sbjct: 318 ERKISP-DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRL 376
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV------WSVD-----VHRMWEGGAYTAISVWLNK 229
+ A + +G P L N L+ +D +H M E G + +
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436
Query: 230 MYEMFMMGE 238
++ +++G+
Sbjct: 437 IHGFYLVGD 445
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 92/212 (43%), Gaps = 15/212 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + Q + + M E G+ + ++N++I F GR+ +A + EM + + P+ T
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ + G E++E + E+ GI+P+ + Y ++ + K NR D A + M T
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 122 NRISNIHQVTGQMIKG-----EFDD--ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
S +I G DD E +M E G YN L+
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE--------TGLVADTTTYNTLIHGF 440
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +G A +L E GL P++ + L+
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 76/182 (41%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SF +I+ F + A+ + ++ K+ P+ T +L C V E+ F ++
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ P+V+ + L+ + R +A LLD M + + G ++ G
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + Y+A++++L G A + E ++G+FP+LF +N
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295
Query: 205 LV 206
++
Sbjct: 296 MI 297
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + + M G+ ++ +++++I+ + R +EA + + M PN T
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ YC AG VD+ E F E+ GI+ + + Y L+ + K + A + EM
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+GV + ++N +I G+F EA + Y EM P+ T +++ C +DE
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ + F + S P+V+ + L+ Y K+ R DD L EM
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 2/202 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +M E+ N +F ++ + GR EA+ M + P + T ++
Sbjct: 167 EALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIV 226
Query: 66 SVYCFAGLVDESKEQFQEIKS-SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
C G + ++++ S I+P+V+ Y ++ K R DA L EM I
Sbjct: 227 DGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
MI G F W E + ++ + YNAL+ A G A
Sbjct: 287 FPDLFTYNSMIVG-FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ DE RG+ P ++ ++
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMI 367
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-----------PNE 58
+L M SG+ + + + +++ G+ ++A++ + M+K + D P+
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+T ++S G E++E ++E+ GI+P + Y ++ K +R D+A + D
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571
Query: 119 MHT-----NRISNIHQVTGQMIKGEFDD 141
M + N ++ + G G DD
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDD 599
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 25/193 (12%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+ G + N +FN +I+ + R ++ ++ EM + + T ++ + G
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ + + QE+ SSG+ P ++ LL + + DA + M Q
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVM-------------Q 492
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
K + D + VE ++ YN L+ L G A + +E R
Sbjct: 493 KSKKDLDASHPFNGVEP------------DVQTYNILISGLINEGKFLEAEELYEEMPHR 540
Query: 194 GLFPELFRHNKLV 206
G+ P+ ++ ++
Sbjct: 541 GIVPDTITYSSMI 553
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 13/249 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERT 60
G E A+L RM E G+ ++ +++ + G A+ +ME+V PN
Sbjct: 198 GRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVI 257
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ C G +++ F E++ GI P + Y ++ + S RW DA LL EM
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+IS VT + F E + E ++D++ G Y+++++
Sbjct: 318 ERKISP-DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRL 376
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV------WSVD-----VHRMWEGGAYTAISVWLNK 229
+ A + +G P L N L+ +D +H M E G + +
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436
Query: 230 MYEMFMMGE 238
++ +++G+
Sbjct: 437 IHGFYLVGD 445
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 92/212 (43%), Gaps = 15/212 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + Q + + M E G+ + ++N++I F GR+ +A + EM + + P+ T
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ + G E++E + E+ GI+P+ + Y ++ + K NR D A + M T
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 122 NRISNIHQVTGQMIKG-----EFDD--ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
S +I G DD E +M E G YN L+
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE--------TGLVADTTTYNTLIHGF 440
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +G A +L E GL P++ + L+
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 77/182 (42%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SFN +I+ F + A+ + ++ K+ P+ T +L C V E+ F ++
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQM 175
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ P+V+ + L+ + R +A LLD M + + G ++ G
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + Y+A++++L G A + E ++G+FP+LF +N
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295
Query: 205 LV 206
++
Sbjct: 296 MI 297
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + + M G+ ++ +++++I+ + R +EA + + M PN T
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ YC AG VD+ E F E+ GI+ + + Y L+ + K + A + EM
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+GV + ++N +I G+F EA + Y EM P+ T +++ C +DE
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ + F + S P+V+ + L+ Y K+ R DD L EM
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 2/202 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +M E+ N +F ++ + GR EA+ M + P + T ++
Sbjct: 167 EALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIV 226
Query: 66 SVYCFAGLVDESKEQFQEIKS-SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
C G + ++++ S I+P+V+ Y ++ K R DA L EM I
Sbjct: 227 DGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
MI G F W E + ++ + YNAL+ A G A
Sbjct: 287 FPDLFTYNSMIVG-FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ DE RG+ P ++ ++
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMI 367
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-----------PNE 58
+L M SG+ + + + +++ G+ ++A++ + M+K + D P+
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+T ++S G E++E ++E+ GI+P + Y ++ K +R D+A + D
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571
Query: 119 MHT-----NRISNIHQVTGQMIKGEFDD 141
M + N ++ + G G DD
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDD 599
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 25/193 (12%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+ G + N +FN +I+ + R ++ ++ EM + + T ++ + G
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ + + QE+ SSG+ P ++ LL + + DA + M Q
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVM-------------Q 492
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
K + D + VE ++ YN L+ L G A + +E R
Sbjct: 493 KSKKDLDASHPFNGVEP------------DVQTYNILISGLINEGKFLEAEELYEEMPHR 540
Query: 194 GLFPELFRHNKLV 206
G+ P+ ++ ++
Sbjct: 541 GIVPDTITYSSMI 553
>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
Length = 800
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 92/204 (45%), Gaps = 2/204 (0%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+K+ ++ M++SG+ ++ ++N +I Q + EA+ + +M + P T
Sbjct: 367 LWKDAVSLFKEMADSGIP-DAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYH 425
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++L YC G +DE+ + + E+ G P+V+ Y L+ + +D AY LL EM N
Sbjct: 426 SLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQN 485
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+S +I G ++ E + + EG+ YN+++ G+
Sbjct: 486 GVSCNDYTYNTLINGLCVVGRVCEVGE-MLKRFETEGFVPTAMTYNSIINGFIKAGMMGS 544
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A V + +G+ P + + +
Sbjct: 545 AFAVYQQMCAKGIPPNIVTYTSFI 568
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G+ ++ ++ +I+ F + G A+K Y EM P+ T A+ C G
Sbjct: 656 KMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNG 715
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+D++++ E+ I P+V+ Y ML+ Y ++ + +A+ L DEM +I
Sbjct: 716 DIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKI 767
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 84/215 (39%), Gaps = 1/215 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + M G N ++ +++ F++A EM++ N+ T
Sbjct: 435 GCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTY 494
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G V E E + ++ G +P+ M Y ++ + K+ A+ + +M
Sbjct: 495 NTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCA 554
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I I G + S + + + + C+G + YN+L+ G
Sbjct: 555 KGIPPNIVTYTSFIDG-YCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMS 613
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A +VL K GL P + +N + +M E
Sbjct: 614 HALQVLVLMLKDGLLPNISVYNSFITGYKNLKMME 648
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 85/192 (44%), Gaps = 1/192 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + A+L+ M ++GV+ N ++N +I GR E + E P T +
Sbjct: 472 FDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNS 531
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ + AG++ + +Q++ + GI P+++ Y + Y K++ D A +L+++
Sbjct: 532 IINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKG 591
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +I G F E N V + +G + YN+ + L + E A
Sbjct: 592 LRPDIAAYNSLIYG-FCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEA 650
Query: 184 ARVLDEATKRGL 195
R ++ K G+
Sbjct: 651 LRFYEKMIKEGI 662
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M ++G +FN+V++ +GGR EEA+ E+ + ++ YC
Sbjct: 234 VLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYC 293
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
V ++ + F+E G++P+ + Y +L+ + + AY L +M + +
Sbjct: 294 LQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTN 353
Query: 130 VTGQMIKGEFDDE 142
+IKG +D+
Sbjct: 354 EFNMVIKGLLNDK 366
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + G+ N +N+ I ++ EEA++ Y +M K D + T ++ +
Sbjct: 618 VLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFS 677
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
G V + + + E+ + G +P + + L ++ DDA LLDEM+
Sbjct: 678 KDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMN 728
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/209 (18%), Positives = 84/209 (40%), Gaps = 7/209 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD---PN 57
G+ A+ +M G+ N ++ + I+ + + + A+K + VRC P+
Sbjct: 539 AGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKM---LNDVRCKGLRPD 595
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
+++ +C G + + + + G+LP++ Y + Y ++A +
Sbjct: 596 IAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYE 655
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+M I +I G F + N ++ ++ +G + AL L
Sbjct: 656 KMIKEGIDLDTATYTTLIDG-FSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRN 714
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A ++LDE + + P + +N L+
Sbjct: 715 GDIDDARKLLDEMNRLDIRPNVLMYNMLI 743
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/191 (16%), Positives = 80/191 (41%), Gaps = 1/191 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
F+ V+ A + G +++A++ + EM +P++R ++ C + + ++++
Sbjct: 180 FDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQ 239
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+G +P + ++ V K R ++A + DE+ + V + + +
Sbjct: 240 DAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATG-KKMSVVLATTLMHGYCLQREV 298
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+ +F++ +G Y L+ G+ E+A + + GL P N +
Sbjct: 299 RKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMV 358
Query: 206 VWSVDVHRMWE 216
+ + ++W+
Sbjct: 359 IKGLLNDKLWK 369
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 13/249 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERT 60
G E A+L RM E G+ ++ +++ + G A+ +ME+V PN
Sbjct: 198 GRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVI 257
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ C G +++ F E++ GI P + Y ++ + S RW DA LL EM
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+IS VT + F E + E ++D++ G Y+++++
Sbjct: 318 ERKISP-DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRL 376
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV------WSVD-----VHRMWEGGAYTAISVWLNK 229
+ A + +G P L N L+ +D +H M E G + +
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436
Query: 230 MYEMFMMGE 238
++ +++G+
Sbjct: 437 IHGFYLVGD 445
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 92/212 (43%), Gaps = 15/212 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + Q + + M E G+ + ++N++I F GR+ +A + EM + + P+ T
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ + G E++E + E+ GI+P+ + Y ++ + K NR D A + M T
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 122 NRISNIHQVTGQMIKG-----EFDD--ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
S +I G DD E +M E G YN L+
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE--------TGLVADTTTYNTLIHGF 440
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +G A +L E GL P++ + L+
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 78/182 (42%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SFN +I+ F + A+ + ++ K+ P+ T +L C V E+ + F ++
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM 175
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ P+V+ + L+ + R +A LLD M + + G ++ G
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + Y+A++++L G A + E ++G+FP+LF +N
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295
Query: 205 LV 206
++
Sbjct: 296 MI 297
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + + M G+ ++ +++++I+ + R +EA + + M PN T
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ YC AG VD+ E F E+ GI+ + + Y L+ + K + A + EM
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+GV + ++N +I G+F EA + Y EM P+ T +++ C +DE
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIHQVT 131
+ + F + S P+V+ + L+ Y K+ R DD L EM N I+ I +
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624
Query: 132 G 132
G
Sbjct: 625 G 625
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-----------PNE 58
+L M SG+ + + + +++ G+ ++A++ + M+K + D P+
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+T ++S G E++E ++E+ GI+P + Y ++ K +R D+A + D
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571
Query: 119 MHT-----NRISNIHQVTGQMIKGEFDD 141
M + N ++ + G G DD
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDD 599
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 25/193 (12%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+ G + N +FN +I+ + R ++ ++ EM + + T ++ + G
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ + + QE+ SSG+ P ++ LL + + DA + M Q
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVM-------------Q 492
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
K + D + VE ++ YN L+ L G A + +E R
Sbjct: 493 KSKKDLDASHPFNGVEP------------DVQTYNILISGLINEGKFLEAEELYEEMPHR 540
Query: 194 GLFPELFRHNKLV 206
G+ P+ ++ ++
Sbjct: 541 GIVPDTITYSSMI 553
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E +++ MS G+ ++NAVI + GR+ A + EM + P+ T
Sbjct: 234 GLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTY 293
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L C E+K+ F ++ G+ P ++ + L+ V +++ D A +M T
Sbjct: 294 NTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKT 353
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + + +I G + + +E + DK+ +G L + YN +L L L
Sbjct: 354 SGLVPDNVIYTILINGYCRNGMMSEALE-IRDKMLEQGCALDVVAYNTILNGLCKKKLLA 412
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + DE +RG+ P+ L+
Sbjct: 413 DANALFDEMVERGVVPDFCTFTTLI 437
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 87/204 (42%), Gaps = 1/204 (0%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L + A+ M E GV + +F +I + G +A+ + M + P+ T
Sbjct: 410 LLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYN 469
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ +C ++++ E + E+ S I P+ + Y +L+ Y +A+ L DEM
Sbjct: 470 ILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRK 529
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
I +IKG + + + K+ EG G YN L+ ++
Sbjct: 530 GIKPTLVTCNTVIKG-YCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDK 588
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A ++++ +GL P++ +N ++
Sbjct: 589 AFFLINKMETKGLQPDVVTYNVIL 612
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 90/197 (45%), Gaps = 9/197 (4%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M++ + + ++N +I+ F + E+A + + EM + PN + +++ YC G
Sbjct: 456 MTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGF 515
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS----NIHQ 129
V E+ + E+ GI P+++ ++ Y +S A L +M + + +
Sbjct: 516 VSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNT 575
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ +KGE+ D++ ++ +K+ +G + YN +L G + A +L +
Sbjct: 576 LINGFVKGEYMDKA-----FFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRK 630
Query: 190 ATKRGLFPELFRHNKLV 206
+RG+ P+ + L+
Sbjct: 631 MIERGIDPDRSTYTTLI 647
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 53/110 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + ++ SG+ N + N ++ A + + ++ ++ME+ + T +++ YC
Sbjct: 172 VYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYC 231
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
GL+ E+ E + G+ P++ Y ++ K R+ A G+ +EM
Sbjct: 232 REGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEM 281
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M SG+ ++ + +I + + G EA++ +M + C + +L+ C L
Sbjct: 351 MKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKL 410
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ ++ F E+ G++P + L+ + K A L M I VT
Sbjct: 411 LADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKP-DIVTYN 469
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ F + + +++++ Y L+ LG A R+ DE ++
Sbjct: 470 ILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRK 529
Query: 194 GLFPELFRHNKLV 206
G+ P L N ++
Sbjct: 530 GIKPTLVTCNTVI 542
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 87/201 (43%), Gaps = 5/201 (2%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFE-EAIKAYVEMEKVRCDPNERTLEAVLS 66
+ IL + R SD+ ++ R+ G E +++ + M C + + ++
Sbjct: 65 EKILLNLRRVRSKRLSDAQTLILRMIRRSGVSRVEIVESLISMSST-CGVDNLVFDLLIR 123
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS- 125
Y A ++E + F+ ++ G L S+ LL K D A+ + +E+ + I
Sbjct: 124 SYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIEL 183
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
N++ + M+ D + ++ D + +G + YN L+ A GL A
Sbjct: 184 NVYTLN-IMVNALCKDHKIDDVKPFLID-MEQKGIFADIVTYNTLINAYCREGLLGEAFE 241
Query: 186 VLDEATKRGLFPELFRHNKLV 206
V++ + +GL P LF +N ++
Sbjct: 242 VMNSMSGKGLKPTLFTYNAVI 262
>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g09680
gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 607
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 11/196 (5%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
++G N FN ++ F + G +A K + E+ K P + +++ YC G +D
Sbjct: 233 DAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLD 292
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQV 130
E +++ S P V Y L+ K N+ D A+GL DEM N + +
Sbjct: 293 EGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLI 352
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
G GE D +++ + K+ +G + YN L+ G A ++D
Sbjct: 353 HGHSRNGEID------LMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGM 406
Query: 191 TKRGLFPELFRHNKLV 206
+RGL P+ + L+
Sbjct: 407 IRRGLRPDKITYTTLI 422
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 36/197 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I+ M G+ + ++ +I+ F +GG E A++ EM++ + + A++ C
Sbjct: 402 IVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMC 461
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G V +++ +E+ +GI P + Y M++ + K + LL EM +
Sbjct: 462 KEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQS-------- 513
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+G+ + YN LL L LG + A +LD
Sbjct: 514 ----------------------------DGHVPSVVTYNVLLNGLCKLGQMKNADMLLDA 545
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P+ +N L+
Sbjct: 546 MLNIGVVPDDITYNTLL 562
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + I M ++G+ + F+A++ + GR +A +A EM + P++ T
Sbjct: 428 GGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +C G + +E++S G +PSV+ Y +LL K + +A LLD M
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAM 546
>gi|357110688|ref|XP_003557148.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27270-like [Brachypodium distachyon]
Length = 1038
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 2/199 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY +I RM SG+ ++ +FN +I + QGG+ ++A + + +++ +E+T
Sbjct: 761 GKLYSAV-SIHDRMISSGIPQSLQTFNIMISVYGQGGKLDKATEMFTAAQELGLRIDEKT 819
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+LS Y AG ++ F +K GI+P + + ++ VYA S D A + +EM
Sbjct: 820 YTNMLSFYGKAGRHQDASVLFTRMKEEGIMPGKISFNSMVNVYATSGLHDKAKFIFEEMQ 879
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ +IK + + ++ E + L +N L+ A G
Sbjct: 880 SSGQIPESLTYLALIKA-YTEGRSYSKAEEAIQMMLTSNITLSCPHFNHLIFAFLKEGKI 938
Query: 181 ERAARVLDEATKRGLFPEL 199
+ A R+ +E G+ P+L
Sbjct: 939 DEARRICNEMEDLGVAPDL 957
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 98/200 (49%), Gaps = 11/200 (5%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
++M E+ V N ++ VI ++ + EEA+ + +M++ R P E T ++S+
Sbjct: 269 NQMRETNVVPNQFTYTIVIGSYVKESLLEEAMNVWRKMKRSRFVPEEATYSGLISLSARH 328
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131
G +++ ++E+++ GI+PS LL++Y K+ + A L EM +RI +
Sbjct: 329 GRGEQALGLYEEMRAHGIVPSNYTCASLLSLYYKTEDYSKALSLFAEMEQSRIVPDEVIY 388
Query: 132 GQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
G +++ G ++D + F++++ + Y A+ + G +RA +V
Sbjct: 389 GILVRIYGKVGLYED------AQCTFEEIDRADLLSDEQTYVAMAQVHMNAGNYDRALQV 442
Query: 187 LDEATKRGLFPELFRHNKLV 206
LD R + P LF ++ ++
Sbjct: 443 LDSMRLRNVEPSLFSYSAVL 462
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY+E M G+ ++ + +++ + + + +A+ + EME+ R P+E
Sbjct: 336 GLYEE-------MRAHGIVPSNYTCASLLSLYYKTEDYSKALSLFAEMEQSRIVPDEVIY 388
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +Y GL ++++ F+EI + +L Y + V+ + +D A +LD M
Sbjct: 389 GILVRIYGKVGLYEDAQCTFEEIDRADLLSDEQTYVAMAQVHMNAGNYDRALQVLDSM-- 446
Query: 122 NRISNI 127
R+ N+
Sbjct: 447 -RLRNV 451
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 6/206 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L +E + +M S +++ +I + GR E+A+ Y EM P+ T
Sbjct: 295 LLEEAMNVWRKMKRSRFVPEEATYSGLISLSARHGRGEQALGLYEEMRAHGIVPSNYTCA 354
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++LS+Y ++ F E++ S I+P + Y +L+ +Y K ++DA +E+
Sbjct: 355 SLLSLYYKTEDYSKALSLFAEMEQSRIVPDEVIYGILVRIYGKVGLYEDAQCTFEEIDRA 414
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ + Q M + + N+ V D + + Y+A+L C +E
Sbjct: 415 DLLSDEQTYVAMAQVHM-NAGNYDRALQVLDSMRLRNVEPSLFSYSAVLR---CHVAKED 470
Query: 183 AARVLD--EATKRGLFPELFRHNKLV 206
A D A + P++F N L+
Sbjct: 471 IAAAEDAFRALSKCGIPDVFCCNDLL 496
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV +FN ++ + ++ + I + +M + PN+ T V+ Y L++E+
Sbjct: 240 GVVPPVSAFNFMVSSLQKDKLHGKVIYLWNQMRETNVVPNQFTYTIVIGSYVKESLLEEA 299
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
++++K S +P Y L+++ A+ R + A GL +EM + I
Sbjct: 300 MNVWRKMKRSRFVPEEATYSGLISLSARHGRGEQALGLYEEMRAHGI 346
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/212 (17%), Positives = 87/212 (41%), Gaps = 15/212 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEA-------IKAYVEMEKVRC 54
G E + M++ G +R++ + + ++ + G+F+EA V+++ V
Sbjct: 691 GKTAEAYNLFMEMADRGHSRDAVTISILVSHLTKHGKFQEAENIINGCFHGKVQLDTVVY 750
Query: 55 DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG 114
+ +++ +Y + D + SSGI S+ + ++++VY + + D A
Sbjct: 751 NTFIKSMLESGKLYSAVSIHD-------RMISSGIPQSLQTFNIMISVYGQGGKLDKATE 803
Query: 115 LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ + I + T + + Q +F ++ EG G +N+++
Sbjct: 804 MFTAAQELGL-RIDEKTYTNMLSFYGKAGRHQDASVLFTRMKEEGIMPGKISFNSMVNVY 862
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
GL ++A + +E G PE + L+
Sbjct: 863 ATSGLHDKAKFIFEEMQSSGQIPESLTYLALI 894
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + +M E G+ N+ ++N +I+ + G E A EM K P+ T
Sbjct: 333 GRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTY 392
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G + E+ + +E++ GI+P + Y +L+ Y++ A+ L +EM +
Sbjct: 393 NLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLS 452
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I H VT + + + + +F+K+ +G + +NA+++ G E
Sbjct: 453 KGIEPTH-VTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVE 511
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA +L E ++ + P+ N L+
Sbjct: 512 RAFMLLKEMDRKSVPPDEVTFNTLM 536
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 1/196 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G+ ++ N ++ F + R E A Y EM ++R T +++V C G
Sbjct: 205 MKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGK 264
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ +++E ++ G P+V+ Y ++ Y+ + A +LD M I G
Sbjct: 265 LKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 324
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G E + +FDK+ G YN L++ G ERA DE K+
Sbjct: 325 LISG-MCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKK 383
Query: 194 GLFPELFRHNKLVWSV 209
G+ P + +N LV ++
Sbjct: 384 GIMPSVSTYNLLVHAL 399
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + ++ + GV+ + FNA+++ G E A EM++ P+E T +
Sbjct: 476 KEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTL 535
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ C G V+E++ E+K GI P + Y L++ Y + DA+ + DEM
Sbjct: 536 MQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEM 590
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M V + +FN +++ + G+ EEA EM++ P+ + ++S Y
Sbjct: 516 LLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYG 575
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + ++ E+ S G P+++ Y L+ K+ D A LL EM IS
Sbjct: 576 RRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDS 635
Query: 130 VTGQMIKG 137
+I+G
Sbjct: 636 TYLSLIEG 643
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 6/173 (3%)
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ ++ V C DE+ + F +K GI+P + +L+++ K NR + A+ L EM
Sbjct: 182 FDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMF 241
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
RIS+ M+ E + + G+ + YN ++ G
Sbjct: 242 RLRISSTVYTFNIMV-NVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 300
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
E A R+LD +G+ P+ + + L+ M + G S +KM E+
Sbjct: 301 EGARRILDAMRVKGIEPDSYTYGSLISG-----MCKEGRLEEASGLFDKMVEI 348
>gi|222625312|gb|EEE59444.1| hypothetical protein OsJ_11623 [Oryza sativa Japonica Group]
Length = 589
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L+RM + VA + FN ++ F GRFE+A + EME+ C PN +
Sbjct: 197 GKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRGCPPNAVSY 256
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ G VDE+ F E++ G P + Y L+ + K+ R Y LD M
Sbjct: 257 TTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDVM 314
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 54/122 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + M G N+ S+ +++ GR +EA++ +VEM + C P+ T
Sbjct: 232 GRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTY 291
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C AG + + E + G+ Y + K + ++ L++ M
Sbjct: 292 GTLVTAFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMRE 351
Query: 122 NR 123
R
Sbjct: 352 CR 353
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 11/154 (7%)
Query: 47 VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
VE + R + R A+L +C G +DE+K +K++ + P V+ + LLA +
Sbjct: 172 VEELQPRLPLSLRHYTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFVAD 231
Query: 107 NRWDDAYGLLDEMH-----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
R++DA+ L EM N +S + G +G D+ VF ++ +G
Sbjct: 232 GRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMR------VFVEMRRKGCA 285
Query: 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
Y L+ A G + LD + GL
Sbjct: 286 PDSVTYGTLVTAFCKAGRISQGYEFLDVMAREGL 319
>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 711
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 88/205 (42%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + + M G+ N F +I+A+ + G +EA+ EM+ P+ T
Sbjct: 270 GCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTY 329
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S C G + ++ ++F ++ +G+ P+ + Y L+ + A L+ EM
Sbjct: 330 STLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMN 389
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N I + I E ++FD + G + +N L++ +G
Sbjct: 390 NGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMG 449
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A VLD G+ P+ F +N LV
Sbjct: 450 KAFSVLDAMISAGIGPDTFTYNTLV 474
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 1/205 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ +L +M ++GV N ++ ++I + GR+EEA K + EM P+ + + +
Sbjct: 171 ELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDS 230
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G E+ E F + + G P+++ Y +LL YA + D + M + I
Sbjct: 231 LCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVAN 290
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
V +I + + ++ +G + Y+ L+ AL +G A
Sbjct: 291 CLVFTILIDA-YAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKF 349
Query: 188 DEATKRGLFPELFRHNKLVWSVDVH 212
++ G+ P ++ L+ H
Sbjct: 350 NQMIGTGVQPNTVVYHSLIQGFCTH 374
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 8/225 (3%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR--CDPNERTLEAVL 65
+ +L RM+E G ++ S+ V++ R ++A+ M K C P+ T V+
Sbjct: 64 KVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVI 123
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ G + ++ + E+ G +P V+ + ++ K+ D+A LL +M N +
Sbjct: 124 HGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVP 183
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
MI G + W+ +F ++ G + +N+ +++L G + AA
Sbjct: 184 PNKVTYTSMIHG-YSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAE 242
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+ +G R N + + + +H G + + + N M
Sbjct: 243 IFYSMAAKG-----HRPNIVTYGILLHGYATEGCFADMMSFFNTM 282
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 19/228 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E + M+ G+ + S+N+ +++ + GR +EA + + M PN T
Sbjct: 200 GRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTY 259
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + F +K GI+ + + + +L+ YAK D+A +L EM
Sbjct: 260 GILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQG 319
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+S +I G D + F+++ G Y++L++
Sbjct: 320 QGLSPDVFTYSTLISALCRMGRLADAVDK------FNQMIGTGVQPNTVVYHSLIQGFCT 373
Query: 177 LGLRERAARVLDEATKRGLF-PELFRHNKLVWSV-------DVHRMWE 216
G +A ++ E G+ P + N +V S+ D H +++
Sbjct: 374 HGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFD 421
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/213 (19%), Positives = 92/213 (43%), Gaps = 10/213 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + K C + M + G + + N++I A + + A +M PN+ T
Sbjct: 130 GKIGKACN-LYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVT 188
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLL 116
+++ Y G +E+ + F+E+ G++P ++ + + K R +A Y +
Sbjct: 189 YTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMA 248
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ H I VT ++ + E + + F+ + +G + L++A
Sbjct: 249 AKGHRPNI-----VTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAK 303
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
G+ + A +L E +GL P++F ++ L+ ++
Sbjct: 304 RGMMDEAMLILSEMQGQGLSPDVFTYSTLISAL 336
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 71/177 (40%), Gaps = 9/177 (5%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
FN +I+ + G +A M P+ T +++ Y +G +D+ F+E+
Sbjct: 435 FNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMS 494
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNRISNIHQVTGQMIKGEFDD 141
I P+ + Y ++L ++ R A +L EM T + + + + + D
Sbjct: 495 DKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTD 554
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
E+ +F KL + N ++ +++ + RE A + + GL P
Sbjct: 555 EA-----IVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPN 606
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + + S +S+SG+ N+ ++ +I + G EEA + MEK C P R L
Sbjct: 589 EEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDT 648
Query: 65 L 65
+
Sbjct: 649 I 649
>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1016
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 114/233 (48%), Gaps = 15/233 (6%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + + +S+ + NS ++ A+I+ + + G E EME+ +PN T ++
Sbjct: 360 KEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSI 419
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN-- 122
++ Y G++DE+ +++ I+P+ Y +L+ Y K+ + + A L +EM +
Sbjct: 420 INGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGL 479
Query: 123 RISNI--HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+++N+ + + +G+ DE+ E + + G L Y +L++ + G
Sbjct: 480 KVNNVLFDVLVNNLKRGKRMDEA-----EELLKDVTSRGLLLDHVNYTSLMDGFFKAGKE 534
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
A +++E T++ + ++ +N L ++ + E G Y A SV+ + M EM
Sbjct: 535 SAALNMVEEMTEKSIPFDVVTYNVL-----INGLLEHGKYEAKSVY-SGMIEM 581
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 12/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M+E + + ++N +I + G++E A Y M ++ PN+ T ++ YC
Sbjct: 540 MVEEMTEKSIPFDVVTYNVLINGLLEHGKYE-AKSVYSGMIEMGLAPNQATYNIMIKAYC 598
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
G +D + E + E+KS I+PS + L+ +++ + A +L+EM H N +
Sbjct: 599 KQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLV 658
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
IH+V + QM E + D G + YN L+ L + ++A
Sbjct: 659 --IHRVLLNASSKSGKANAVLQMHEQLVDM----GLKINQEAYNNLIVVFCRLRMTKKAT 712
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
VL + G + +N L+
Sbjct: 713 SVLKYMIRDGFVADTVTYNALI 734
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 22/218 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM---------------EKVRC 54
++ RM + G+ + S+N +I F + G +++A E+ ++++
Sbjct: 169 LVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKK 228
Query: 55 DPNER------TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108
D N T ++S YC ++E++ ++E+ +G LP V+ Y ++ K R
Sbjct: 229 DDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGR 288
Query: 109 WDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYN 168
+A LL EM + H +I F S W+ +L G L +
Sbjct: 289 LSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFA-CQSQLVVRGMTLDLVMCT 347
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L++ L+ + A + +K L P + L+
Sbjct: 348 TLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALI 385
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 91/208 (43%), Gaps = 8/208 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +++L M E + N +++++I + + G +EAI +M PN
Sbjct: 392 GDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVY 451
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC AG + + + + E+K SG+ + + + +L+ + R D+A LL ++ +
Sbjct: 452 AILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTS 511
Query: 122 NRISNIHQVTGQMIKGEF---DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ H ++ G F + + MVE + +K + YN L+ L G
Sbjct: 512 RGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEK----SIPFDVVTYNVLINGLLEHG 567
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
E A V + GL P +N ++
Sbjct: 568 KYE-AKSVYSGMIEMGLAPNQATYNIMI 594
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 78/179 (43%), Gaps = 1/179 (0%)
Query: 28 AVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87
+++ + + +EA + + K+ PN T A++ YC G ++ + QE++
Sbjct: 348 TLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEK 407
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
I P+V+ Y ++ Y K D+A ++ +M I V +I G + ++
Sbjct: 408 HINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDG-YCKAGKQEI 466
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+++++ G + ++ L+ L + A +L + T RGL + + L+
Sbjct: 467 ATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLM 525
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 59/118 (50%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M E+G+ ++ +++ +I + + G +E+I+ Y EM P T ++S +
Sbjct: 784 LFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFA 843
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
G +D+++E E++ G+ PS Y +L+ + ++ D L +++ N+
Sbjct: 844 KVGKMDQARELLNEMQVRGVPPSSSTYDILICGWCNLSKHPDLDRTLKKIYRTDAKNL 901
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K+ A ++M GV+ N ++N ++ G E + + +M++ +P+ T + +
Sbjct: 744 KKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTL 803
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+S Y G ES + E+ + G +P Y +L++ +AK + D A LL+EM
Sbjct: 804 ISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQ 859
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ K+ ++L M G ++ ++NA+I + + ++A+ Y +M PN T
Sbjct: 707 MTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYN 766
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L AGL+ E E F ++K +G+ P Y L++ Y K ++ L EM
Sbjct: 767 LLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEM 823
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 95/253 (37%), Gaps = 51/253 (20%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE------ 58
+E +A+ M +G + ++++++ + GR EA + EM+K+ DPN
Sbjct: 255 EEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTL 314
Query: 59 ------------------------RTLEAVLSVYCFAGLVDESKEQ-----FQEIKSSGI 89
TL+ V+ GL SK + F+ + +
Sbjct: 315 IDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNL 374
Query: 90 LPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGEFDDESN 144
+P+ + Y L+ Y K + LL EM + N I+ + G KG D+ N
Sbjct: 375 IPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAIN 434
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
V K+ + Y L++ G +E A + +E GL + N
Sbjct: 435 ------VMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGL-----KVNN 483
Query: 205 LVWSVDVHRMWEG 217
+++ V V+ + G
Sbjct: 484 VLFDVLVNNLKRG 496
>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 800
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 92/204 (45%), Gaps = 2/204 (0%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+K+ ++ M++SG+ ++ ++N +I Q + EA+ + +M + P T
Sbjct: 367 LWKDAVSLFKEMADSGIP-DAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYH 425
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++L YC G +DE+ + + E+ G P+V+ Y L+ + +D AY LL EM N
Sbjct: 426 SLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQN 485
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+S +I G ++ E + + EG+ YN+++ G+
Sbjct: 486 GVSCNDYTYNTLINGLCVVGRVCEVGE-MLKRFETEGFVPTAMTYNSIINGFIKAGMMGS 544
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A V + +G+ P + + +
Sbjct: 545 AFAVYQQMCAKGIPPNIVTYTSFI 568
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 62/122 (50%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ +E + +M + G+ ++ ++ +I+ F + G A+K Y EM P+ T
Sbjct: 646 MMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFT 705
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
A+ C G +D++++ E+ I P+V+ Y ML+ Y ++ + +A+ L DEM
Sbjct: 706 ALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLER 765
Query: 123 RI 124
+I
Sbjct: 766 KI 767
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 84/215 (39%), Gaps = 1/215 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + M G N ++ +++ F++A EM++ N+ T
Sbjct: 435 GCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTY 494
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G V E E + ++ G +P+ M Y ++ + K+ A+ + +M
Sbjct: 495 NTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCA 554
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I I G + S + + + + C+G + YN+L+ G
Sbjct: 555 KGIPPNIVTYTSFIDG-YCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMS 613
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A +VL K GL P + +N + +M E
Sbjct: 614 HALQVLVLMLKDGLLPNISVYNSFITGYKNLKMME 648
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 1/192 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + A+L+ M ++GV+ N ++N +I GR E + E P T +
Sbjct: 472 FDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNS 531
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ + AG++ + +Q++ + GI P+++ Y + Y K++ D A +L+++
Sbjct: 532 IINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKG 591
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +I G F E N V + +G + YN+ + L + E A
Sbjct: 592 LRPDIAAYNSLIFG-FCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEA 650
Query: 184 ARVLDEATKRGL 195
R+ ++ K G+
Sbjct: 651 LRLYEKMIKEGI 662
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M ++G +FN+V++ +GGR EEA+ E+ + ++ YC
Sbjct: 234 VLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYC 293
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
V ++ + F+E G++P+ + Y +L+ + + AY L +M + +
Sbjct: 294 LQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTN 353
Query: 130 VTGQMIKGEFDDE 142
+IKG +D+
Sbjct: 354 EFNMVIKGLLNDK 366
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + G+ N +N+ I ++ EEA++ Y +M K D + T ++ +
Sbjct: 618 VLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFS 677
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
G V + + + E+ + G +P + + L ++ DDA LLDEM+
Sbjct: 678 KDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMN 728
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/209 (18%), Positives = 85/209 (40%), Gaps = 7/209 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD---PN 57
G+ A+ +M G+ N ++ + I+ + + + A+K + VRC P+
Sbjct: 539 AGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKM---LNDVRCKGLRPD 595
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
+++ +C G + + + + G+LP++ Y + Y ++A L +
Sbjct: 596 IAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYE 655
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+M I +I G F + N ++ ++ +G + AL L
Sbjct: 656 KMIKEGIDLDTATYTTLIDG-FSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRN 714
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A ++LDE + + P + +N L+
Sbjct: 715 GDIDDARKLLDEMNRLDIRPNVLMYNMLI 743
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/191 (16%), Positives = 80/191 (41%), Gaps = 1/191 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
F+ V+ A + G +++A++ + EM +P++R ++ C + + ++++
Sbjct: 180 FDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQ 239
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+G +P + ++ V K R ++A + DE+ + V + + +
Sbjct: 240 DAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATG-KKMSVVLATTLMHGYCLQREV 298
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+ +F++ +G Y L+ G+ E+A + + GL P N +
Sbjct: 299 RKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMV 358
Query: 206 VWSVDVHRMWE 216
+ + ++W+
Sbjct: 359 IKGLLNDKLWK 369
>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
Length = 1494
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 21/207 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ + SG+ + ++N +I A + EEA+K Y +M RC P+ T A++SVY
Sbjct: 313 LLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYG 372
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL----------DEM 119
G+ E+ F++++S G LP + Y LL +A+ D + DEM
Sbjct: 373 RCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEM 432
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
N I +++ GQ + ++ + G Y L+++L +
Sbjct: 433 TYNTIIHMYGKRGQ-----------HDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANM 481
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ AA V+ E + P L + L+
Sbjct: 482 IKEAAEVMSEMLNAXVKPTLRTFSALI 508
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 101/241 (41%), Gaps = 30/241 (12%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++ +++ FR G +A K M++ +P T+ ++ Y +G +E+++ +K
Sbjct: 1062 YHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLK 1121
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN-------------RISNIHQVTG 132
G+ S + Y ++ Y K+ + A L EM + R +++ Q T
Sbjct: 1122 VEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTS 1181
Query: 133 QMI-------KGEFD---------DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ I FD +S V+ +KL F NAL + LW
Sbjct: 1182 EAIVLLKALRDTGFDLPIRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWA 1241
Query: 177 LGLRERAARVLDEATKRGLF-PELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFM 235
LR A+ V A KR ++ ++FR + W D +M G A +++WL+ M F+
Sbjct: 1242 FELRATASWVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDHMQASFL 1301
Query: 236 M 236
+
Sbjct: 1302 I 1302
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 98/216 (45%), Gaps = 3/216 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y+ +AI + M G + DS N +++A GR +E E++ + ++ ++
Sbjct: 828 GCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSI 887
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L + AG + E K+ +Q +K++G P++ Y +++ + AK R D ++ EM
Sbjct: 888 TLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEV 947
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
+ ++K + +++ V+ + G YN L+ ++C R
Sbjct: 948 AXFKPDLSIWNSVLK-LYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLI-LMYCRDRRP 1005
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E ++ E + GL P+L + L+ + +M E
Sbjct: 1006 EEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVE 1041
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 94/249 (37%), Gaps = 47/249 (18%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +A++S M + + +N+V++ + G F++ + Y +++ P+E T
Sbjct: 932 GKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDT 991
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLL 116
++ +YC +E E++ G+ P + Y L++ + K + A GLL
Sbjct: 992 YNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLL 1051
Query: 117 DE------------MHTNRISNIHQ------------------VTGQMIKGEFDDESNWQ 146
+ M R S H T ++ + +
Sbjct: 1052 SKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPE 1111
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
E V D L EG L Y+++++A G A + L E K GL P+
Sbjct: 1112 EAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPD-------- 1163
Query: 207 WSVDVHRMW 215
HR+W
Sbjct: 1164 -----HRIW 1167
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 36/171 (21%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ S M SG + ++ ++ +I++ + +EA + EM P RT A++ Y
Sbjct: 453 LYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYA 512
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLL----------------------------- 100
AG E++E F + SGI P + Y ++L
Sbjct: 513 KAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHA 572
Query: 101 ------AVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE-FDDESN 144
V K NR +D + ++ +M N + ++KGE FD +N
Sbjct: 573 LYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAAN 623
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/196 (16%), Positives = 79/196 (40%), Gaps = 38/196 (19%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG-- 72
+E+ +NA++ + + GRF + + M C+P+ + +++ +G
Sbjct: 246 AEAAXGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTM 305
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ + + E E++ SGI P ++ Y L++ ++ + ++A + ++M +R
Sbjct: 306 VTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHR--------- 356
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
C+ + YNA++ G+ A R+ +
Sbjct: 357 ------------------------CQP---DLWTYNAMISVYGRCGMSREAGRLFKDLES 389
Query: 193 RGLFPELFRHNKLVWS 208
+G P+ +N L+++
Sbjct: 390 KGFLPDAVTYNSLLYA 405
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 104/252 (41%), Gaps = 28/252 (11%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+++ ++++ + + + +NA+I A+ G +E A + M + P ++
Sbjct: 794 LWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVN 853
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD---------AY 113
++ G +DE QE++ G S ++L +A + + A
Sbjct: 854 GLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAA 913
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
G MH RI + G + KG+ + VE + ++ + + +N++L+
Sbjct: 914 GYFPTMHLYRI-----MIGLLAKGK-----RVRDVEAMVSEMEVAXFKPDLSIWNSVLKL 963
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
+G ++ +V + GL P+ +N L+ R E G L+ M+EM
Sbjct: 964 YTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEG--------LSLMHEM 1015
Query: 234 FMMGEDLPQLAT 245
+G + P+L T
Sbjct: 1016 RRVGLE-PKLDT 1026
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +L M + + N F A+I+ F + G EA Y EM + PN T
Sbjct: 769 GRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTY 828
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C G + ++K F + S G P V+ Y L+ + KS R +D L EM
Sbjct: 829 NSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTH 888
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G + + + VF+++ G + YN LL+ L G E
Sbjct: 889 QGLVGDAFTYNTLIHG-YCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIE 947
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A ++++ K + ++ +N ++
Sbjct: 948 KALVMVEDLQKNQMDVDIITYNIII 972
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 3/199 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L +M + G + + +++ F QG RF+EA+ M ++ +PN V++
Sbjct: 671 ALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGL 730
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNI 127
C ++ + E F ++ GI+ + Y L++ S RW DA LL +M +I N+
Sbjct: 731 CKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNV 790
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
T + F E N + ++ ++ + YN+L+ G A +
Sbjct: 791 IFFTALI--DTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMF 848
Query: 188 DEATKRGLFPELFRHNKLV 206
D +G FP++ +N L+
Sbjct: 849 DLMVSKGCFPDVVTYNTLI 867
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ IL M++ + + +F A+I+AF + G +EA + Y +M + PN T
Sbjct: 220 GEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTY 279
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++++ C G + +K+ F + S G P+V+ Y L+ + KS R +D L M+
Sbjct: 280 NSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMY 338
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 2/211 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+IL +M + G + +F +++ F R +A M K +PN ++
Sbjct: 121 SILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCL 180
Query: 69 CFAGLVDESKEQFQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G V+ + E E++ G L + ++ Y LL S W A +L +M RI N
Sbjct: 181 CKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRI-NP 239
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
T + F + N + ++ ++ G YN+L+ L G A +
Sbjct: 240 DVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTF 299
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
D +G FP + +N L+ R E G
Sbjct: 300 DLMASKGCFPNVVTYNTLINGFCKSRRVEDG 330
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 100/238 (42%), Gaps = 18/238 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++E +++ M+E G+ N +N VI + A++ + MEK + T
Sbjct: 698 GNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVT 757
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
++S C +G ++ +++ I P+V+ + L+ + K +A L EM
Sbjct: 758 YNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMI 817
Query: 120 ----HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
H N ++ + G I+G D +++FD + +G + YN L+ +
Sbjct: 818 RRSVHPNILTYNSLINGFCIQGRLGD------AKHMFDLMVSKGCFPDVVTYNTLITG-F 870
Query: 176 CLGLR-ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
C R E ++ E T +GL + F +N L +H + G N+M +
Sbjct: 871 CKSKRVEDGMKLFCEMTHQGLVGDAFTYNTL-----IHGYCQAGKLNVAQKVFNRMVD 923
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 77/194 (39%), Gaps = 35/194 (18%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M G++ + SF +I F + R A+ +M K+ DP+ T ++L +C
Sbjct: 90 QMELFGISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRN 149
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ ++ + SG P+V+ Y L+ K+ + A LL+EM
Sbjct: 150 RIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEK----------- 198
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
KG + + YN LL L G +AAR+L + TK
Sbjct: 199 ---KGRLAAD---------------------LVTYNTLLTGLCYSGEWRQAARILRDMTK 234
Query: 193 RGLFPELFRHNKLV 206
R + P++F L+
Sbjct: 235 RRINPDVFTFTALI 248
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 11/178 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E Q + +M +S + N+ ++N++I GR A K + M C PN T
Sbjct: 255 GNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTY 314
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C + V++ + FQ + G++ Y L+ Y + + A + M +
Sbjct: 315 NTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVS 374
Query: 122 -----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ I++ + G + GE MV++ D + E Y LG+ YN ++ L
Sbjct: 375 CGVTPDIITHCILLHGLCVNGEIGS----AMVKFN-DMRSGEKY-LGIVAYNIMIHGL 426
>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
Length = 695
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 4/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +L M S + ++N +I+A + GR EA+ V M K PN T
Sbjct: 384 GRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTY 443
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
A++ YC V+ +K+ F + SG+ P ++ Y +L+ Y K+ D+A L EM H
Sbjct: 444 NAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRH 503
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N I +I +I G + V+ + D++ G + YN LL+A
Sbjct: 504 KNLIPDIASYN-SLIDG-LCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPF 561
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
++A + + + G++P+ + ++ +V
Sbjct: 562 DKAISLFRQIVE-GIWPDFYTNHAIV 586
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E +L++M V + +FN +I+A + GR EA M K P+ T
Sbjct: 244 GRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTY 303
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ YC V E++E F + G+ P V+ Y +L+ Y K+ D+A L E+
Sbjct: 304 NALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCN 363
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G + V+ + D+++ + YN L++AL G
Sbjct: 364 KNLVPTIASYNSLIDG-LCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRIL 422
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A VL K+G+ P + +N ++
Sbjct: 423 EALGVLVMMMKKGVKPNIVTYNAMM 447
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E Q +L+ MS+ G + ++NA++E + EA + + M K +P+ ++
Sbjct: 283 EAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLI 342
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
YC +VDE+ F+E+ + ++P++ Y L+ S R LLDEMH +
Sbjct: 343 DGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSA-Q 401
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
VT ++ E V + +G + YNA+++ +CL A+
Sbjct: 402 PPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDG-YCLRNNVNVAK 460
Query: 186 -VLDEATKRGLFPELFRHNKLV 206
+ + K GL P++ +N L+
Sbjct: 461 DIFNRMVKSGLEPDILNYNVLI 482
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 5/200 (2%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
CQ +L++ G + ++ +I + G+ + A+ EMEK PN A++
Sbjct: 148 CQNLLAQ----GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALID 203
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
C G V ++ +I GIL + Y L+ RW + LL +M + +
Sbjct: 204 GLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENV-D 262
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
T ++ E + V ++ G + YNAL+E A +
Sbjct: 263 PDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAREL 322
Query: 187 LDEATKRGLFPELFRHNKLV 206
+ KRGL P++ +N L+
Sbjct: 323 FNRMVKRGLEPDVLNYNVLI 342
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 85/211 (40%), Gaps = 13/211 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y ++ +++ G++ + +F +I + A + K PN T
Sbjct: 69 GHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTF 128
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C G++ ++ + Q + + G L Y L+ +K+ + A LL EM
Sbjct: 129 NTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEK 188
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN-CEGYG-----LGMRFYNALLEALW 175
+ + + +I G D +V D L C G L YN+L++
Sbjct: 189 SSVQPNLVMYSALIDGLCKD-------GFVSDALGLCSQIGERGILLDAVTYNSLIDGCC 241
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G + ++L + + + P+ + N L+
Sbjct: 242 SVGRWQEVTQLLTKMVRENVDPDDYTFNILI 272
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 83/167 (49%), Gaps = 1/167 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ ++ M + G+ N+ FN++I++ + GR E+ K + M ++ PN T +++
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLING 520
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
YC AG +DE+ + + S G+ P+ + Y L+ Y K +R +DA L EM ++ +S
Sbjct: 521 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 580
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+++G F E ++ ++ G + + YN +L L
Sbjct: 581 IITYNIILQGLFQTRRTAAAKE-LYVRITESGTQIELSTYNIILHGL 626
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++GV + ++N+++ + G+ +EAI +M +P+ T ++ C
Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLC 312
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + +GLLD M N I H
Sbjct: 313 KNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHY 372
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I + + VF K+ +G Y A++ L G E A ++
Sbjct: 373 VFSILICA-YAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 431
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
GL P +N L+ + WE
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTCNKWE 458
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 4/200 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---CDPNERTLEAVLS 66
+L RM+E G N S+N +++ R +EA++ M R P+ + V++
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+ G D++ + E+ GILP V+ Y ++A K+ D A +L+ M N +
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
++ G + + ++ K+ +G + Y+ L++ L G A ++
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFL-KKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKI 323
Query: 187 LDEATKRGLFPELFRHNKLV 206
D TKRGL PE+ + L+
Sbjct: 324 FDSMTKRGLKPEITTYGTLL 343
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 21/215 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M +G+ + F+ +I A+ + G+ ++A+ + +M + +PN T
Sbjct: 350 GALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTY 409
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
AV+ + C +G V+++ F+++ G+ P + Y L+ N+W+ A L+ EM
Sbjct: 410 GAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD 469
Query: 120 --------HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
N I + H G++I+ E +F+ + G + YN L+
Sbjct: 470 RGICLNTIFFNSIIDSHCKEGRVIES-----------EKLFELMVRIGVKPNVITYNTLI 518
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A ++L GL P ++ L+
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 1/184 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+ VI F + G ++A Y EM P+ T ++++ C A +D++ E +
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+G++P M Y +L Y S + +A G L +M ++ + VT ++
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEP-DVVTYSLLMDYLCKNGR 316
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+FD + G + Y LL+ G +LD + G+ P+ + +
Sbjct: 317 CMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSI 376
Query: 205 LVWS 208
L+ +
Sbjct: 377 LICA 380
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV + +++ +++ + GR EA K + M K P T
Sbjct: 280 GQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P + +L+ YAK + D A + +M
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQ 399
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N + VT + G + F+++ EG G YN+L+ L E
Sbjct: 400 QGL-NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 458
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
RA ++ E RG+ N ++ S
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDS 485
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +LS M G+ N+ +++ +I + + R E+A+ + EME P+ T
Sbjct: 524 AGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT 583
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+L +KE + I SG + Y ++L K+ DDA
Sbjct: 584 YNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDA 635
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 2/207 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E M G ++ N +I + GR ++A+K + EME +RC P+ T
Sbjct: 1303 AGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVT 1362
Query: 61 LEAVL-SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +++ E F+ +K SGI PS Y +L+ + K+NR + A LL+EM
Sbjct: 1363 YNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEM 1422
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+I + + +F +L R Y +++ L G
Sbjct: 1423 DEKGFPPCPAAYCSLIDA-LGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGR 1481
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A + DE K G P+++ +N L+
Sbjct: 1482 LDDAINMFDEMNKLGCAPDVYAYNALM 1508
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M E G+ + + +I F + A+ + EM C P+ T ++
Sbjct: 1242 LLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLG 1301
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +DE+ F E++ G P + ++ K+ R DDA L EM T R
Sbjct: 1302 KAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVV 1361
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+IK F+ +S V F+++ G Y+ L++ E+A +L+E
Sbjct: 1362 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 1421
Query: 190 ATKRGLFP 197
++G P
Sbjct: 1422 MDEKGFPP 1429
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 100/231 (43%), Gaps = 22/231 (9%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNERTLEA 63
++CQ I + ++N++I G++E+ + Y EM + C P+ T A
Sbjct: 1178 RKCQPI------------AQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSA 1225
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTN 122
++S +C G D + + E+K G+ P+ Y ML+A++ K N A L +EM H
Sbjct: 1226 LISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQY 1285
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
++ T ++I+G + F ++ EG F N ++ L G +
Sbjct: 1286 CRPDVFTYT-ELIRG-LGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDD 1343
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTA-ISVWLNKMYE 232
A ++ E P + +N ++ + ++E + + + W +M E
Sbjct: 1344 AMKLFQEMETLRCIPSVVTYNTIIKA-----LFESKSRASEVPSWFERMKE 1389
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 15/211 (7%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM ESG++ +S +++ +I+ F + R E+A+ EM++ P +++ A
Sbjct: 1386 RMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK 1445
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV-- 130
D + E FQE+K + S Y +++ K+ R DDA + DEM N++ V
Sbjct: 1446 RYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM--NKLGCAPDVYA 1503
Query: 131 -----TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+G G D+ + ++ G + YN +L L G RA
Sbjct: 1504 YNALMSGLARTGMLDEALS------TMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAME 1557
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+L + + P++ +N ++ ++ M+E
Sbjct: 1558 MLSNMKQSTVRPDVVSYNTVLGALSHAGMFE 1588
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 53/108 (49%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M++ G A + ++NA++ + G +EA+ M++ C P+ + +L+ G
Sbjct: 1492 MNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGG 1551
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ E +K S + P V+ Y +L + + +++A L+ EM+T
Sbjct: 1552 PHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNT 1599
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/200 (18%), Positives = 78/200 (39%), Gaps = 36/200 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEA-----------------------------------FR 34
+L M E G ++ ++I+A
Sbjct: 1418 LLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLG 1477
Query: 35 QGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM 94
+ GR ++AI + EM K+ C P+ A++S G++DE+ + ++ G +P +
Sbjct: 1478 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDIN 1537
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
Y ++L AK+ A +L M + + V+ + G ++ + +
Sbjct: 1538 SYNIILNGLAKTGGPHRAMEMLSNMKQSTV-RPDVVSYNTVLGALSHAGMFEEASKLMKE 1596
Query: 155 LNCEGYGLGMRFYNALLEAL 174
+N G+ + Y+++LEA+
Sbjct: 1597 MNTLGFEYDLITYSSILEAI 1616
>gi|473874|gb|AAA17740.1| a membrane-associated salt-inducible protein [Nicotiana tabacum]
Length = 435
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
AI + G+ + +N +I AF G + A++ +M+K R P RT ++ +
Sbjct: 17 AIFEDVIRDGLKPDVVLYNNIIRAFCGMGNMDRALRIVEQMKKERHRPTSRTFMPIIHAF 76
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG + ++ + F ++ SG +P+V Y L+ + + D A ++DEM I
Sbjct: 77 AKAGAIRKALDVFDMMRRSGCIPTVQTYNALILGLVEKRQMDKAVEVVDEMLLAGIRPNE 136
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ ++ G + EY F ++ EG L + Y ALL+A G E A V
Sbjct: 137 RTYTTIMDGYASLGDTGKAFEY-FSRIKDEGLELDVYTYEALLKACCKSGRIESALAVTK 195
Query: 189 EATKRGLFPELFRHNKLV 206
E + + F +N L+
Sbjct: 196 EMNAKNIPRNTFVYNILI 213
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 1/199 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ + M SG ++NA+I + + ++A++ EM PNERT
Sbjct: 79 AGAIRKALDVFDMMRRSGCIPTVQTYNALILGLVEKRQMDKAVEVVDEMLLAGIRPNERT 138
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y G ++ E F IK G+ V Y LL KS R + A + EM+
Sbjct: 139 YTTIMDGYASLGDTGKAFEYFSRIKDEGLELDVYTYEALLKACCKSGRIESALAVTKEMN 198
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I V +I G W+ + + ++ EG + Y + + A G
Sbjct: 199 AKNIPRNTFVYNILIDGWARRSDVWEAAD-LMQQMRQEGVQPDIHTYTSFVNACCKAGDM 257
Query: 181 ERAARVLDEATKRGLFPEL 199
++A + E + GL P L
Sbjct: 258 QKAMNTIQEMKRVGLNPML 276
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M + GV + ++ + + A + G ++A+ EM++V +P + +
Sbjct: 224 EAADLMQQMRQEGVQPDIHTYTSFVNACCKAGDMQKAMNTIQEMKRVGLNPMLKPIPLSY 283
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+V A L +++ + F+E+K SG+ P Y C++ ++ +++ +D I
Sbjct: 284 TV-GHASLPEKALKCFEEMKKSGLKPDKAVYHCLMTSLLSRATVAEDYI----------I 332
Query: 125 SNIHQVTGQMIKG 137
+ IH+V +M++
Sbjct: 333 TGIHRVCEEMVES 345
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 105/236 (44%), Gaps = 34/236 (14%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M G+ ++ ++N++I+ F + GR ++ + + EM+ + C+P+ T A+++
Sbjct: 150 RGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINC 209
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY---------GLLDE 118
+C G + E ++E+K +G+ P+V+ Y L+ + K A GL+
Sbjct: 210 FCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPN 269
Query: 119 MHT-----------NRISNIHQVTGQMIKGEFD--------------DESNWQMVEYVFD 153
+T +S+ ++ +M++ + D + E +F
Sbjct: 270 EYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFG 329
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
K++ G + YNAL+ +RA +L+E RG+ P+L + +W +
Sbjct: 330 KMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGL 385
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + + +M +GV N S+NA+I F + + A++ E++ P+
Sbjct: 322 KEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF 381
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ C ++ +K E+K GI + + Y L+ Y KS + LLDEM I
Sbjct: 382 IWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDI 441
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+I G ++ + V+Y N G + A+++ L E A
Sbjct: 442 EVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAAT 501
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ ++ ++GL P+ + L+
Sbjct: 502 TLFEQMVQKGLVPDRTAYTSLM 523
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 7/184 (3%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
F+A+ G EEAI+ + +M++ R P R+ +L + G D+ K F+++
Sbjct: 63 FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 122
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+G P+V Y +++ K + A GL +EM + MI G F
Sbjct: 123 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG-FGKVGRL 181
Query: 146 QMVEYVFDKLN---CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
F+++ CE + YNAL+ G E GL P + +
Sbjct: 182 DDTVCFFEEMKDMCCEP---DVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSY 238
Query: 203 NKLV 206
+ LV
Sbjct: 239 STLV 242
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ +E S+M V + S N ++ F + G+ ++ + + +M P T
Sbjct: 74 GMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTY 133
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G V+ ++ F+E+K G++P + Y ++ + K R DD +EM
Sbjct: 134 NIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK- 192
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +T + F + + ++ G + Y+ L++A G+ +
Sbjct: 193 DMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQ 252
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A + + + GL P + + L+
Sbjct: 253 QAIKFYVDMRRVGLVPNEYTYTSLI 277
>gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Cucumis sativus]
gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Cucumis sativus]
Length = 704
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 113/265 (42%), Gaps = 31/265 (11%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERTLEAVLSVY 68
+ M E G+ N +N ++ G EA++ + +M+ C P+ T +++++Y
Sbjct: 376 VYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMITIY 435
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM------HTN 122
G V E++E ++ +G P++ L+ Y K+ R DD +++ +
Sbjct: 436 SCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFNQLIELGLTPDD 495
Query: 123 RISN-IHQVTGQMIKGEFDD------ESNWQM---VEYVFDKLNCEG------------- 159
R + V Q KGE +N ++ VE + + + EG
Sbjct: 496 RFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDKEGNFRTEASELFSVV 555
Query: 160 -YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+ + N L++ L L ++A +LD ++ +L + WS+ + + G
Sbjct: 556 SADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRSPTQWSLYLKGLSLGA 615
Query: 219 AYTAISVWLNKMYEMFMMGEDLPQL 243
A TA+ VW+ + ++ GE+LP L
Sbjct: 616 ALTALHVWIKDLTKVLESGEELPPL 640
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + I M ++G + + ++ +++ A+ + E+A+ Y EM++ N +L
Sbjct: 337 QIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLL 396
Query: 66 SVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ G V+E+ E FQ++KSSG P + ++ +Y+ + +A +L++M
Sbjct: 397 AMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMITIYSCGGKVSEAEEMLNDM 451
Score = 36.6 bits (83), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y C + M G+ N +N +++A + R + Y EM K P+ T
Sbjct: 297 AGNYDGCLNVYEEMKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWAT 356
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L Y A +++ ++E+K G+ +V+ Y LLA+ A ++A + +M
Sbjct: 357 YASLLRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMK 416
Query: 121 TN 122
++
Sbjct: 417 SS 418
>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1188
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 1/197 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
+ K+ +L M + G + F +++A + G ++A K + +M + + PN R
Sbjct: 183 ANMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSVKDASKVFEDMRE-KIPPNLRY 241
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L +C G + E+KE ++K +G+ P ++ + LL+ YA + + DAY LL++M
Sbjct: 242 FTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMR 301
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I+ E VF ++ G + Y AL+ G+
Sbjct: 302 KRGYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMI 361
Query: 181 ERAARVLDEATKRGLFP 197
++ VLD+ K+G+ P
Sbjct: 362 DKGYSVLDDMRKKGVMP 378
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L+ M + G N++ + +I+A R R +EA++ +VEME+ C+ + T A++S +
Sbjct: 296 LLNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGF 355
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G++D+ +++ G++PS + Y +L + K ++++ L+++M
Sbjct: 356 CKWGMIDKGYSVLDDMRKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKM 406
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 93/209 (44%), Gaps = 1/209 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL++M GV + ++N+V+ + + E+ ++ + M + C PN+ T + C
Sbjct: 483 ILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLC 542
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG V+E+ + EI + GI P + + +++ +A + AY L M +
Sbjct: 543 KAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTT 602
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
T ++ F ++ + M E +F ++ G Y +++ G + + L E
Sbjct: 603 ATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLE 662
Query: 190 ATKRGLFPELFRHNKLVWSVDV-HRMWEG 217
++G P L +++ + V HR+ E
Sbjct: 663 MIEKGFIPSLTTFGRVINCLCVQHRVHEA 691
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 94/190 (49%), Gaps = 3/190 (1%)
Query: 30 IEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGI 89
++++ + G+ +EA+ + M+ C+P+ + A++++ +G ++ + F +K+ GI
Sbjct: 83 MKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGI 142
Query: 90 LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVE 149
+P V + + + + ++ R A LL+ M ++ ++ V + F +E N+++
Sbjct: 143 VPDVYTFTIRIKSFCRTKRPHSALRLLNNM-VSQGCQLNAVAYCTVVAGFYEE-NYRVEA 200
Query: 150 Y-VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
Y +F+ + G + +N LL L G + + R+L++ K+G+ LF N +
Sbjct: 201 YELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQG 260
Query: 209 VDVHRMWEGG 218
+ M G
Sbjct: 261 LCRKGMLSGA 270
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + RM + S+NA++ + G F++A K ++ M+ V P+ T
Sbjct: 90 GKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTF 149
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ +C + + S G + + YC ++A + + N +AY L ++M
Sbjct: 150 TIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDML- 208
Query: 122 NRISNIHQV-TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
RI V T + + Q E + +K+ +G + +N ++ L G+
Sbjct: 209 -RIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGML 267
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A +LD + GL P++ +N L+
Sbjct: 268 SGAMSMLDSVIREGLTPDVVTYNTLI 293
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/205 (18%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ ++L + G+ + ++N +I + EA K ++ +P+ T
Sbjct: 265 GMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTY 324
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC G++ +++ Q G +P YC L+ +++ D A L +
Sbjct: 325 NTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALG 384
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + +IKG + Q ++ + ++++ G + YN ++ L +G
Sbjct: 385 KGLKPTVILYNMLIKGLCQEGLILQALQ-MMNEMSENGCSSDIWTYNLVINGLCKMGCVS 443
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++++A +G P++F N L+
Sbjct: 444 DANNLMNDAIAKGYVPDVFTFNTLI 468
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N +I+ Q G +A++ EM + C + T V++ C G V ++ +
Sbjct: 394 YNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAI 453
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+ G +P V + L+ Y K + + +L++M ++ ++ ++ G N
Sbjct: 454 AKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNE 513
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
++E F+ + +G YN L E+L G A ++DE +G+ P+
Sbjct: 514 DLME-TFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPD 565
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 10 ILSRMSES-GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ RM E V+ + ++N +I AF + K ++EM C P+ T ++ +
Sbjct: 588 LFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGF 647
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
C G D + E+ G +PS+ + ++ +R +A ++ M N I
Sbjct: 648 CITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGI 703
>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Vitis vinifera]
Length = 1442
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 21/207 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ + SG+ + ++N +I A + EEA+K Y +M RC P+ T A++SVY
Sbjct: 281 LLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYG 340
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL----------DEM 119
G+ E+ F++++S G LP + Y LL +A+ D + DEM
Sbjct: 341 RCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEM 400
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
N I +++ GQ + ++ + G Y L+++L +
Sbjct: 401 TYNTIIHMYGKRGQ-----------HDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANM 449
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ AA V+ E + P L + L+
Sbjct: 450 IKEAAEVMSEMLNARVKPTLRTFSALI 476
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 30/253 (11%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++ +++ FR G +A K M++ +P T+ ++ Y +G +E+++ +K
Sbjct: 1030 YHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLK 1089
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN-------------RISNIHQVTG 132
G+ S + Y ++ Y K+ + A L EM + R +++ Q T
Sbjct: 1090 VEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTS 1149
Query: 133 QMI-------KGEFD---------DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ I FD +S V+ +KL F NAL + LW
Sbjct: 1150 EAIVLLKALRDTGFDLPIRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWA 1209
Query: 177 LGLRERAARVLDEATKRGLF-PELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFM 235
LR A+ V A KR ++ ++FR + W D +M G A +++WL+ M + +
Sbjct: 1210 FELRATASWVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDHMQDASL 1269
Query: 236 MGEDLPQLATVVV 248
G L + V++
Sbjct: 1270 QGYPLSPKSVVLI 1282
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 99/216 (45%), Gaps = 3/216 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y+ +AI + M G + DS N +++A GR +E E++ + ++ ++
Sbjct: 796 GCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSI 855
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L + AG + E K+ +Q +K++G P++ Y +++ + AK R D ++ EM
Sbjct: 856 TLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEV 915
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
R + ++K + +++ V+ + G YN L+ ++C R
Sbjct: 916 ARFKPDLSIWNSVLK-LYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLI-LMYCRDRRP 973
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E ++ E + GL P+L + L+ + +M E
Sbjct: 974 EEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVE 1009
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 36/171 (21%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ S M SG + ++ ++ +I++ + +EA + EM R P RT A++ Y
Sbjct: 421 LYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYA 480
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLL----------------------------- 100
AG E++E F + SGI P + Y ++L
Sbjct: 481 KAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHA 540
Query: 101 ------AVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE-FDDESN 144
V K NR +D + ++ +M N + ++KGE FD +N
Sbjct: 541 LYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAAN 591
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 94/249 (37%), Gaps = 47/249 (18%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +A++S M + + +N+V++ + G F++ + Y +++ P+E T
Sbjct: 900 GKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDT 959
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLL 116
++ +YC +E E++ G+ P + Y L++ + K + A GLL
Sbjct: 960 YNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLL 1019
Query: 117 DE------------MHTNRISNIHQ------------------VTGQMIKGEFDDESNWQ 146
+ M R S H T ++ + +
Sbjct: 1020 SKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPE 1079
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
E V D L EG L Y+++++A G A + L E K GL P+
Sbjct: 1080 EAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPD-------- 1131
Query: 207 WSVDVHRMW 215
HR+W
Sbjct: 1132 -----HRIW 1135
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/196 (16%), Positives = 79/196 (40%), Gaps = 38/196 (19%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG-- 72
+E+ +NA++ + + GRF + + M C+P+ + +++ +G
Sbjct: 214 AEAASGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTM 273
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ + + E E++ SGI P ++ Y L++ ++ + ++A + ++M +R
Sbjct: 274 VTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHR--------- 324
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
C+ + YNA++ G+ A R+ +
Sbjct: 325 ------------------------CQP---DLWTYNAMISVYGRCGMSREAGRLFKDLES 357
Query: 193 RGLFPELFRHNKLVWS 208
+G P+ +N L+++
Sbjct: 358 KGFLPDAVTYNSLLYA 373
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + ++M + N +FN +++ F + R +EA M K P+ T
Sbjct: 261 GKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTY 320
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC V+++K F I G+ P++ Y +++ + K + D+A L EMH
Sbjct: 321 NSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHC 380
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEY---VFDKLNCEGYGLGMRFYNALLEALWCLG 178
N I +I G + Y + D+++ G YN++L+AL
Sbjct: 381 NNIIPDVVTYNSLIDG----LCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNH 436
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
++A +L + G+ P++ + LV
Sbjct: 437 QVDKAIALLTKMKDEGIQPDICTYTTLV 464
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 100/234 (42%), Gaps = 18/234 (7%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L E + S M G++ + ++NA+I F G+ ++A + +M +PN T
Sbjct: 227 LVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFN 286
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ +C + E+K + GI P V Y L+ Y + A + + +
Sbjct: 287 ILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQR 346
Query: 123 RIS-NIHQVTGQMIKG-----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
++ NIH + MI G + D+ N +F +++C + YN+L++ L
Sbjct: 347 GVNPNIHSYS-IMIHGFCKIKKVDEAMN------LFKEMHCNNIIPDVVTYNSLIDGLCK 399
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
LG A +++DE RG+ H+K+ ++ + + + L KM
Sbjct: 400 LGKISYALKLVDEMHDRGV-----PHDKITYNSILDALCKNHQVDKAIALLTKM 448
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 90/209 (43%), Gaps = 11/209 (5%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + I + +S+ GV N S++ +I F + + +EA+ + EM P+ T +++
Sbjct: 335 KAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLI 394
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI- 124
C G + + + E+ G+ + Y +L K+++ D A LL +M I
Sbjct: 395 DGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQ 454
Query: 125 ----SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ V G G +D VF+ L +GY L + Y A+++ GL
Sbjct: 455 PDICTYTTLVDGLCKNGRLED------ARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLF 508
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ + +L + + G P + ++ S+
Sbjct: 509 DESLDLLSKMEENGCIPNAVTYEIIICSL 537
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 83/189 (43%), Gaps = 1/189 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G N S+ +I + G+ A++ ++ PN ++ C LV+E+
Sbjct: 172 GFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEA 231
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ + E+ S GI P V+ Y L++ + + DA L ++M I N + T ++
Sbjct: 232 FDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENI-NPNVYTFNILVD 290
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
F E + + V + +G + YN+L++ + +A + + ++RG+ P
Sbjct: 291 GFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNP 350
Query: 198 ELFRHNKLV 206
+ ++ ++
Sbjct: 351 NIHSYSIMI 359
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 84/198 (42%), Gaps = 3/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L R+ V N +N +I++ + EA Y EM P+ T A++S +C
Sbjct: 199 LLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFC 258
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIH 128
G + ++ + F ++ I P+V + +L+ + K R +A +L M I ++
Sbjct: 259 IVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVF 318
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
M + E N +++F+ ++ G + Y+ ++ + + A +
Sbjct: 319 TYNSLMDRYCLVKEVNK--AKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFK 376
Query: 189 EATKRGLFPELFRHNKLV 206
E + P++ +N L+
Sbjct: 377 EMHCNNIIPDVVTYNSLI 394
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 9/200 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E Q I + G + +FN++I+ + G+ E+A M V +P+ T
Sbjct: 522 GRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTY 581
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
A+L YC G +D+ F+E+ S G+ P+ + Y ++L R A + EM
Sbjct: 582 SALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIE 641
Query: 120 --HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
T IS + G + + DDE+ +F KL + N +++A++ +
Sbjct: 642 SGTTMDISTCGIILGGLCRNNCDDEAIA-----LFKKLGAMNVKFNIAIINTMIDAMYKV 696
Query: 178 GLRERAARVLDEATKRGLFP 197
RE A + D + GL P
Sbjct: 697 RKREEANELFDSISATGLVP 716
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 3/201 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR--CDPNERTLEAVL 65
+L RM E GV ++ S++ V+++ + R + A+ M K C PN + V+
Sbjct: 175 NVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVI 234
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ G V ++ F E+ G++P V+ Y + K+ D A +L +M +N
Sbjct: 235 HGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFE 294
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
MI G + W+ +F ++ G + N+ + +L G + AA
Sbjct: 295 PDKVTYNCMIHG-YSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAE 353
Query: 186 VLDEATKRGLFPELFRHNKLV 206
D +G P+L ++ L+
Sbjct: 354 FFDSMAAKGHKPDLVTYSVLL 374
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 37/206 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E I ++M E GV ++ ++ VI AF + GR +A+ + +M + P+
Sbjct: 416 GMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVY 475
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +C G + ++KE E+ S GI P+ + + ++ K R +A + D +
Sbjct: 476 NSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLV- 534
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
IH GE D F+ L +GYGL +G
Sbjct: 535 ------IHI-------GERPD-------VITFNSL-IDGYGL--------------VGKM 559
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E+A VLD G+ P++ ++ L+
Sbjct: 560 EKAFGVLDAMISVGIEPDVVTYSALL 585
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 104/255 (40%), Gaps = 44/255 (17%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G + N S+N VI F + G +A + EM + P+ T + + C A +D++
Sbjct: 222 GCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKA 281
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR--ISNIHQVTGQM- 134
+ +++ S+G P + Y ++ Y+ +W + G+ EM T R + +I M
Sbjct: 282 ELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREM-TRRGLMPDIFTCNSYMS 340
Query: 135 -------------------IKGEFDDESNWQMV-------EYVFDKLNC----EGYGL-- 162
KG D + ++ YV D LN EG G+
Sbjct: 341 SLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVA 400
Query: 163 GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTA 222
YN L++A G+ + A + + +RG+ P+ + + ++ + RM
Sbjct: 401 DHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFS--RMGR------ 452
Query: 223 ISVWLNKMYEMFMMG 237
++ ++K +M MG
Sbjct: 453 LADAMDKFNQMIAMG 467
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/116 (18%), Positives = 52/116 (44%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + +S +G+ N+ ++ +I + G EEA + MEK C P+ R L +
Sbjct: 700 EEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNI 759
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ V G + ++ ++ I ++L+++++ ++ + L M+
Sbjct: 760 IRVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSRKGKYREQIKSLPAMY 815
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 87/213 (40%), Gaps = 10/213 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +KE + M+ G+ + + N+ + + + G+ +EA + + M P+ T
Sbjct: 311 GQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTY 370
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G V + F ++ +GI+ Y +L+ Y K D+A + +M
Sbjct: 371 SVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQE 430
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR----FYNALLEALWCL 177
+ G +I S + DK N + +G++ YN+L++
Sbjct: 431 RGVMPDAWTYGTVIAA----FSRMGRLADAMDKFN-QMIAMGLKPDTIVYNSLIQGFCMH 485
Query: 178 GLRERAARVLDEATKRGLF-PELFRHNKLVWSV 209
G +A ++ E RG+ P N ++ S+
Sbjct: 486 GNLVKAKELISEMMSRGIPRPNTVFFNSIINSL 518
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 101/205 (49%), Gaps = 7/205 (3%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E +L M E+G ++ S+N V+ + G++EEA K +M + +C P+ T ++
Sbjct: 214 EEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSL 273
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ +C +DE++ +++ P+V+ Y L+ +++++R DAY ++++M I
Sbjct: 274 MDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGI 333
Query: 125 SNIHQVTGQMIKGEFDD---ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
S ++ G E +++E + +K +C + Y+ L+ L LG +
Sbjct: 334 SPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEK-DC---APDVVTYSILVNGLCKLGKVD 389
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +L+ +RG P L N ++
Sbjct: 390 DARLLLEMMLERGCQPNLVTFNTMI 414
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 103/230 (44%), Gaps = 10/230 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNER 59
G +E +L M E A + +++ ++ + G+ ++A + +EM R C PN
Sbjct: 350 AGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDA-RLLLEMMLERGCQPNLV 408
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T ++ +C AG VDE + + +K P V+ Y L+ Y K+NR DA+ +L +
Sbjct: 409 TFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILG-I 467
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
++ S + G G+ ++ + V D + +G Y ++ L +
Sbjct: 468 SPDKASYSSMLEGLCSTGKVEE------AQEVMDLMTKQGCPPTSSHYALIIGGLCDVER 521
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNK 229
+ A ++L ++RG P L+ ++ L+ + + E A + V L K
Sbjct: 522 GDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVE-DAINVLDVMLEK 570
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 94/201 (46%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + ++ +M ESG+ ++ ++NA++ + + EE K EM + +P+ + V+
Sbjct: 180 EARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVV 239
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ C +G +E+ + +++ P V+ Y L+ + K ++ D+A LL++M R +
Sbjct: 240 ACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCA 299
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+T + G F V + + G + YN LL+ L G E A
Sbjct: 300 PT-VITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHE 358
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+L+ ++ P++ ++ LV
Sbjct: 359 LLEVMVEKDCAPDVVTYSILV 379
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 98/257 (38%), Gaps = 48/257 (18%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
R S+ NS ++ A+I F + G + ++ EM R P+ T +L YC G
Sbjct: 15 RFSDPSKPSNS-TYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIG 73
Query: 73 LVDESKEQFQEIKSSGIL---PSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
+D + F+ G + P+ YC+L+ + R D+AY LLDEM H +
Sbjct: 74 DLDRALSHFR-----GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAA 128
Query: 125 SNIHQVTGQMIKGEFDDESN-----------WQMVEY------------------VFDKL 155
+ G G+ D N ++ Y + +K+
Sbjct: 129 VYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKM 188
Query: 156 NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
G YNALL L E +++L+E + G P+ F +N +V +
Sbjct: 189 KESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVAC-----LC 243
Query: 216 EGGAYTAISVWLNKMYE 232
E G Y L KM E
Sbjct: 244 ESGKYEEAGKILEKMIE 260
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 92/205 (44%), Gaps = 8/205 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M ++G++ + ++N +++ + G+ EEA + M + C P+ T +++ C
Sbjct: 324 VMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLC 383
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VD+++ + + G P+++ + ++ + K+ + D+ + +L+ M +
Sbjct: 384 KLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVV 443
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G + + D G Y+++LE L G E A V+D
Sbjct: 444 TYSTLIDG-------YCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDL 496
Query: 190 ATKRGLFPELFRHNKLVWSV-DVHR 213
TK+G P + ++ + DV R
Sbjct: 497 MTKQGCPPTSSHYALIIGGLCDVER 521
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 18/230 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + ++ +N +I + G+ + A M + C P+ T +++ C
Sbjct: 114 LLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCC 173
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
+DE+++ +++K SG+ P + Y LL K N+ ++ LL+EM +
Sbjct: 174 QTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTF 233
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
S V G++ E +++E + +K C G + YN+L++ + + A
Sbjct: 234 SYNTVVACLCESGKY--EEAGKILEKMIEK-KC---GPDVVTYNSLMDGFCKVSKMDEAE 287
Query: 185 RVLDEATKRGLFPELFRHNKLVWS-------VDVHRMWEGGAYTAISVWL 227
R+L++ R P + + L+ D +R+ E IS L
Sbjct: 288 RLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDL 337
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 82/182 (45%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +I Q R +EA + EM + C P+ +++ C G +D ++ + +
Sbjct: 94 TYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMM 153
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+P V+ Y L+ ++N D+A L+++M + ++ ++ G ++
Sbjct: 154 LERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNG-LCKQNQ 212
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ V + +++ G YN ++ L G E A ++L++ ++ P++ +N
Sbjct: 213 LEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNS 272
Query: 205 LV 206
L+
Sbjct: 273 LM 274
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 103/229 (44%), Gaps = 12/229 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y+E IL +M E + ++N++++ F + + +EA + +M RC P T
Sbjct: 246 GKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITY 305
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
++ + A + ++ +++ +GI P ++ Y LL K+ + ++A+ LL+ M
Sbjct: 306 TTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVE 365
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ ++ V G G+ DD ++E + ++ G + +N +++
Sbjct: 366 KDCAPDVVTYSILVNGLCKLGKVDDA--RLLLEMMLER----GCQPNLVTFNTMIDGFCK 419
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWS-VDVHRMWEGGAYTAIS 224
G + +VL+ + P++ ++ L+ +RM + A IS
Sbjct: 420 AGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGIS 468
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 3/193 (1%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G++ + S+++++E G+ EEA + M K C P ++ C DE+
Sbjct: 466 GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEA 525
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQVTGQMIK 136
+ Q + G P++ Y +L+ K+ R +DA +LD M + ++ T +I
Sbjct: 526 LKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYT-SLID 584
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
G F + F + G YN L+ G E+A V+ ++G
Sbjct: 585 G-FCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCN 643
Query: 197 PELFRHNKLVWSV 209
P+ + L+ S+
Sbjct: 644 PDAATYFSLMRSL 656
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E Q ++ M++ G S + +I R +EA+K M + C+PN T
Sbjct: 485 GKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTY 544
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ C V+++ + G +P V Y L+ + K N+ D AY M
Sbjct: 545 SILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMR 603
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 54/110 (49%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L MSE G N +++ +I + R E+AI M + C P+ T +++ +C
Sbjct: 528 MLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFC 587
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+D + + F+ ++ SG P + Y +L++ + +S + A ++ M
Sbjct: 588 KINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLM 637
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 42/87 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G + ++ ++I+ F + + + A + + M C+P++ ++S +C
Sbjct: 563 VLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFC 622
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCY 96
+G V+++ E Q + G P Y
Sbjct: 623 QSGNVEKAIEVMQLMLEKGCNPDAATY 649
>gi|168061839|ref|XP_001782893.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665615|gb|EDQ52293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 713
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 114/289 (39%), Gaps = 41/289 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++E + L RM +GV + SF+ ++EA+ G+ + K V+M++
Sbjct: 361 GSQWQEAENTLERMKANGVKPVAQSFSFLLEAYSLSGQIPKGEKLIVKMKEENLIYGIAG 420
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L Y AG + + ++ ++ G P+ + ++ K N D+ + + +
Sbjct: 421 HNSLLRFYMRAGDIGSIIQTYETCQTRGPKPNQSSFVPMIEALTKENTVDERFWGIAQDL 480
Query: 121 TNRISNIHQVT---------------------------------------GQMIKGEFDD 141
N ++H G+ + +
Sbjct: 481 ENAPFDVHFAIHGALLSALGRCGQSPDADRLLGILKRLGCSPDICNLFEEGEAAQSKLSG 540
Query: 142 ESNWQMVEYVFDKLNCEGYGLGM--RFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
E W+ + +F+ L EG + F+NAL++ALW + RA +V + + G+F
Sbjct: 541 EEAWKRLATLFNSLEQEGVNMEAERNFHNALIDALWRFDYKLRALKVTELSVSLGVFGSN 600
Query: 200 FRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
K WS+DV G A + WL+ + + GE +P +++
Sbjct: 601 VCQWKDCWSLDVRFAGTGAAQILLLTWLSGIRQAIKSGEKMPSKVKILL 649
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 92/205 (44%), Gaps = 6/205 (2%)
Query: 5 KECQAILSR---MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
K +A ++R + S +A + ++N +++ + + GR ++ I + EM+K P+ T
Sbjct: 224 KSLRAEIARREDLGNSSLAFDLVTYNTLLDVYGKAGRLDDVIYWFGEMKKSGVQPDVLTF 283
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++++ Y A D E + + ++ Y LL ++ K + DA+ +L++M
Sbjct: 284 DSLVNAYGKASHYD--GEVLELFRKYNYKSDLVFYNTLLFMFGKGGHYADAWKILEDMKA 341
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I F S WQ E +++ G + ++ LLEA G
Sbjct: 342 AGFMPTSETYNSLILA-FGRGSQWQEAENTLERMKANGVKPVAQSFSFLLEAYSLSGQIP 400
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+ +++ + + L + HN L+
Sbjct: 401 KGEKLIVKMKEENLIYGIAGHNSLL 425
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 15/199 (7%)
Query: 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK---------- 78
+I AF + + + EME + +++SVY AGL E +
Sbjct: 171 LINAFGRARDWHKVDLVLAEMETYGIKADLMIYNSLISVYGKAGLFYEVELVVKSLRAEI 230
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE 138
+ +++ +S + ++ Y LL VY K+ R DD EM + + +T +
Sbjct: 231 ARREDLGNSSLAFDLVTYNTLLDVYGKAGRLDDVIYWFGEMKKSGVQP-DVLTFDSLVNA 289
Query: 139 FDDESNWQ-MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ S++ V +F K N Y + FYN LL G A ++L++ G P
Sbjct: 290 YGKASHYDGEVLELFRKYN---YKSDLVFYNTLLFMFGKGGHYADAWKILEDMKAAGFMP 346
Query: 198 ELFRHNKLVWSVDVHRMWE 216
+N L+ + W+
Sbjct: 347 TSETYNSLILAFGRGSQWQ 365
>gi|115455091|ref|NP_001051146.1| Os03g0728200 [Oryza sativa Japonica Group]
gi|50428716|gb|AAT77067.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108710874|gb|ABF98669.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113549617|dbj|BAF13060.1| Os03g0728200 [Oryza sativa Japonica Group]
Length = 601
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L+RM + VA + FN ++ F GRFE+A + EME+ C PN +
Sbjct: 209 GKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRGCPPNAVSY 268
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ G VDE+ F E++ G P + Y L+ + K+ R Y LD M
Sbjct: 269 TTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDVM 326
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 54/122 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + M G N+ S+ +++ GR +EA++ +VEM + C P+ T
Sbjct: 244 GRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTY 303
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C AG + + E + G+ Y + K + ++ L++ M
Sbjct: 304 GTLVTAFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMRE 363
Query: 122 NR 123
R
Sbjct: 364 CR 365
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 11/154 (7%)
Query: 47 VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
VE + R + R A+L +C G +DE+K +K++ + P V+ + LLA +
Sbjct: 184 VEELQPRLPLSLRHYTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFVAD 243
Query: 107 NRWDDAYGLLDEMH-----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
R++DA+ L EM N +S + G +G D+ VF ++ +G
Sbjct: 244 GRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMR------VFVEMRRKGCA 297
Query: 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
Y L+ A G + LD + GL
Sbjct: 298 PDSVTYGTLVTAFCKAGRISQGYEFLDVMAREGL 331
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 8/197 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLYKE MS+ GV + ++ A+I+ F + GR E A+K + EM +PN
Sbjct: 241 GLYKE-------MSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVF 293
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G V+ + +Q+++ G++P ++ Y L+ ++ A +++EM
Sbjct: 294 TTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKN 353
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G D M + K+ + L Y AL+ L G
Sbjct: 354 AGLKPDKVTYTTLIDGCCKD-GKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPV 412
Query: 182 RAARVLDEATKRGLFPE 198
A RVL E + L P+
Sbjct: 413 DAERVLREMMEAALEPD 429
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 17/214 (7%)
Query: 7 CQAILSRMS-------------ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR 53
C ++SR+ ++G+A + FN ++ F + G A K + EM +
Sbjct: 157 CSGLMSRLPSTPEAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRR-S 215
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
P T ++S C A +D ++E+ G+ P V Y L+ + ++ R ++A
Sbjct: 216 VQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAV 275
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
+ +EM ++ V +I E N ++ + G + YNAL+
Sbjct: 276 KMFNEMRDTGVNPNAVVFTTLIDAHC-KEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNG 334
Query: 174 LWCLGLRERAAR-VLDEATKRGLFPELFRHNKLV 206
L C +AA +++E GL P+ + L+
Sbjct: 335 L-CRARNLKAAESIVEEMKNAGLKPDKVTYTTLI 367
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I +M+E V+ + ++ A+I + GR +A + EM + +P+ T V+ +C
Sbjct: 382 IKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFC 441
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G V + +E+++ G P V+ Y +++ K + +A LL M
Sbjct: 442 RKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAM 491
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 93/197 (47%), Gaps = 1/197 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ ++ M E + +++ ++I+ F + R EA + + + K P+
Sbjct: 406 GNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMF 465
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ +C G +D + + +E+ ++ ++P + + L+ Y + + ++A LLDEM
Sbjct: 466 NALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKE 525
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I H +I G + + + VFD++ G+ + YNAL++ +G +
Sbjct: 526 RGIKPDHISYNTLISG-YSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEAD 584
Query: 182 RAARVLDEATKRGLFPE 198
A +L E +G+ P+
Sbjct: 585 HAEELLREMQSKGITPD 601
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 91/202 (45%), Gaps = 1/202 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + ++ M E GV + ++N I + + G ++A+ + EM + P T ++
Sbjct: 374 EEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSL 433
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ V+ + E++E+F++ G+LP ++ + L+ + + D A+ LL EM ++
Sbjct: 434 IDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKV 493
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+VT + + E + + + D++ G YN L+ G + A
Sbjct: 494 VP-DEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDAL 552
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
V DE G P L +N L+
Sbjct: 553 EVFDEMLSLGFDPTLLTYNALI 574
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 23/204 (11%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + ++N +I A R EEA EM + +P+ T ++ YC G
Sbjct: 348 MMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGN 407
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA---------YGLL-DEMHTNR 123
++ F E+ I P+V Y L+ V+ K NR +A G+L D + N
Sbjct: 408 AKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNA 467
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ER 182
+ + H V G + + F + V D++ +N L++ +C + E
Sbjct: 468 LIDGHCVNGNIDRA-FQLLKEMDNAKVVPDEVT----------FNTLMQG-YCRERKVEE 515
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A ++LDE +RG+ P+ +N L+
Sbjct: 516 AKKLLDEMKERGIKPDHISYNTLI 539
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + +L M E G+ + S+N +I + + G ++A++ + EM + DP T A+
Sbjct: 514 EEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNAL 573
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
+ Y G D ++E +E++S GI P Y
Sbjct: 574 IQGYSKIGEADHAEELLREMQSKGITPDDSTY 605
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +K+ + + M GV N ++N VI + G+FE A K + M+ P+ T
Sbjct: 231 GKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTY 290
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ +S C ++E+ ++ SG++P+ + Y L+ D A+ DEM
Sbjct: 291 NSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEM-M 349
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
NR T ++ E + E + ++ +G + YN + G +
Sbjct: 350 NRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAK 409
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A + DE ++ + P + + L+
Sbjct: 410 KALSLFDEMVEKNIRPTVETYTSLI 434
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 82/184 (44%), Gaps = 11/184 (5%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+FN +I + G++++A ME PN T V++ YC G + + + F+ +
Sbjct: 219 TFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTM 278
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIHQVTGQMIKGEF 139
K + P Y ++ K R ++A G+L ++ N ++ + G KG+
Sbjct: 279 KDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDL 338
Query: 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
D ++ D++ G + YN L+ AL+ E A ++ E ++G+ P++
Sbjct: 339 DKAFAYR------DEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDV 392
Query: 200 FRHN 203
+N
Sbjct: 393 VTYN 396
>gi|125544731|gb|EAY90870.1| hypothetical protein OsI_12477 [Oryza sativa Indica Group]
Length = 601
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L+RM + VA + FN ++ F GRFE+A + EME+ C PN +
Sbjct: 209 GKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRGCPPNAVSY 268
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ G VDE+ F E++ G P + Y L+ + K+ R Y LD M
Sbjct: 269 TTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDVM 326
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 54/122 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + M G N+ S+ +++ GR +EA++ +VEM + C P+ T
Sbjct: 244 GRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTY 303
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C AG + + E + G+ Y + K + ++ L++ M
Sbjct: 304 GTLVTAFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMRE 363
Query: 122 NR 123
R
Sbjct: 364 CR 365
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 11/154 (7%)
Query: 47 VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
VE + R + R A+L +C G +DE+K +K++ + P V+ + LLA +
Sbjct: 184 VEELQPRLPLSLRHYTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGFVAD 243
Query: 107 NRWDDAYGLLDEMH-----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
R++DA+ L EM N +S + G +G D+ VF ++ +G
Sbjct: 244 GRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMR------VFVEMRRKGCA 297
Query: 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
Y L+ A G + LD + GL
Sbjct: 298 PDSVTYGTLVTAFCKAGRISQGYEFLDVMAREGL 331
>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
Length = 1042
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 21/207 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ + SG+ + ++N +I A + EEA+K Y +M RC P+ T A++SVY
Sbjct: 256 LLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYG 315
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL----------DEM 119
G+ E+ F++++S G LP + Y LL +A+ D + DEM
Sbjct: 316 RCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEM 375
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
N I +++ GQ + ++ + G Y L+++L +
Sbjct: 376 TYNTIIHMYGKRGQH-----------DLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANM 424
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ AA V+ E + P L + L+
Sbjct: 425 IKEAAEVMSEMLNARVKPTLRTFSALI 451
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 98/235 (41%), Gaps = 30/235 (12%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++ +++ FR G +A K M++ +P T+ ++ Y +G +E+++ +K
Sbjct: 612 YHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLK 671
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN-------------RISNIHQVTG 132
G+ S + Y ++ Y K+ + A L EM + R +++ Q T
Sbjct: 672 VEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTS 731
Query: 133 QMI-------KGEFD---------DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ I FD +S V+ +KL F NAL + LW
Sbjct: 732 EAIVLLKALRDTGFDLPIRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWA 791
Query: 177 LGLRERAARVLDEATKRGLF-PELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
LR A+ V A KR ++ ++FR + W D +M G A +++WL+ M
Sbjct: 792 FELRATASWVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDHM 846
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 36/171 (21%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ S M SG + ++ ++ +I++ + +EA + EM R P RT A++ Y
Sbjct: 396 LYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYA 455
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLL----------------------------- 100
AG E++E F + SGI P + Y ++L
Sbjct: 456 KAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHA 515
Query: 101 ------AVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE-FDDESN 144
V K NR +D + ++ +M N + ++KGE FD +N
Sbjct: 516 LYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAAN 566
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/194 (18%), Positives = 84/194 (43%), Gaps = 3/194 (1%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG-- 72
+E+ +NA++ + + GRF + + M C+P+ + +++ +G
Sbjct: 189 AEAASGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTM 248
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ + + E E++ SGI P ++ Y L++ ++ + ++A + ++M +R
Sbjct: 249 VTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYN 308
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
MI + + +F L +G+ YN+LL A G ++ + ++ K
Sbjct: 309 AMI-SVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVK 367
Query: 193 RGLFPELFRHNKLV 206
G + +N ++
Sbjct: 368 MGFGKDEMTYNTII 381
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 96/206 (46%), Gaps = 2/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + C+ I +M++ V + +N++I + GR EE+ K + +M++ PNE T
Sbjct: 503 GNVSLACE-IFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFT 561
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y G ++ +++ Q + +G+ P+ + Y LL Y KS+ + M
Sbjct: 562 YSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSML 621
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +++ G +I N + V + G + Y++L+ L R
Sbjct: 622 DQGVMLDNRIYGILIH-NLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADR 680
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E+A +LDE +K+G+ P + +N L+
Sbjct: 681 EKAFGILDEMSKKGVDPNIVCYNALI 706
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G++ + +++ +IEA+ + F+ A K VEM + C N T +++ C +G
Sbjct: 235 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGA 294
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
V+E+ ++++ G++P Y L+ KS R ++A LLDEM + V
Sbjct: 295 VEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYAN 354
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G F E N + ++ G Y+ L+ L +G +RA+ +L + +
Sbjct: 355 LIDG-FMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRD 413
Query: 194 GLFPELFRHNKLV 206
P+ +N ++
Sbjct: 414 SHRPDTITYNLII 426
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 2/218 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +A+L MS + + N + +I+ F + G +EA K EM PN+ T + ++
Sbjct: 332 EAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLV 391
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G +D + +++ P + Y +++ + + + DA+ LL EM IS
Sbjct: 392 RGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGIS 451
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
MI G + + +++ +G Y L+ G A
Sbjct: 452 PNVYTYSIMIHG-LCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACE 510
Query: 186 VLDEATKRGLFPELFRHNKLVWSVD-VHRMWEGGAYTA 222
+ D+ TK + P+L+ +N L++ + V R+ E Y A
Sbjct: 511 IFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFA 548
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 38/238 (15%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K+ +LS M +G++ N +++ +I Q G E+A EM PN +
Sbjct: 436 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 495
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH---- 120
+S YC G V + E F ++ +LP + CY L+ +K R +++ +M
Sbjct: 496 ISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL 555
Query: 121 -TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD------------------------KL 155
N + + G + G+ ES Q+V+ + D K+
Sbjct: 556 LPNEFTYSGLIHGYLKNGDL--ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKV 613
Query: 156 NC-------EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +G L R Y L+ L G E A RVL K G P++ ++ L+
Sbjct: 614 SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLI 671
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 5/195 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G+ + ++ A+I + R EA EM PN ++ + G
Sbjct: 305 MEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGN 364
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--HTNRISNIHQVT 131
DE+ + +E+ ++G+ P+ + Y L+ K + D A LL +M ++R I
Sbjct: 365 ADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTI--TY 422
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+I+G F S + + N G + Y+ ++ L G E+A+ +L+E T
Sbjct: 423 NLIIEGHFRHHSKKDAFRLLSEMENA-GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMT 481
Query: 192 KRGLFPELFRHNKLV 206
+GL P F + L+
Sbjct: 482 TKGLKPNAFVYAPLI 496
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 77/197 (39%), Gaps = 36/197 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M ++ ++N +IE + ++A + EME PN T ++ C
Sbjct: 406 LLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLC 465
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G +++ + +E+ + G+ P+ Y L++ Y +
Sbjct: 466 QSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR------------------------ 501
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
E N + +FDK+ + YN+L+ L +G E + + +
Sbjct: 502 ------------EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQ 549
Query: 190 ATKRGLFPELFRHNKLV 206
+RGL P F ++ L+
Sbjct: 550 MQERGLLPNEFTYSGLI 566
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
IL MS+ GV N +NA+I+ + G A + + PN T +++
Sbjct: 685 GILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGS 744
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G + + + E+ ++GI P Y +L + + + A L++EM
Sbjct: 745 CKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 795
>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 890
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 89/193 (46%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G+ + ++N+++ G +E A K EM+ P+ T L C AG
Sbjct: 310 MIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQ 369
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+D ++ F+E+ S + P+V+ Y ++ YAK+N +DA L +EM + + +V+
Sbjct: 370 IDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVC-LDRVSYN 428
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ G ++ N ++ G + YNALL G+ + R+ +E R
Sbjct: 429 TLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKAR 488
Query: 194 GLFPELFRHNKLV 206
++P ++ ++
Sbjct: 489 NIYPNTLTYSTMI 501
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 115/276 (41%), Gaps = 39/276 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFE-------EAIKAYVEMEK--- 51
GL + +L M E G+ N +FN++I+A +Q E +AI +E
Sbjct: 543 GLMESSIMLLMAMMEKGIKPNVVTFNSIIDASQQSPTLEYGVNGSSDAIDYPIEQSSPIV 602
Query: 52 ----VRCDPNERTLEAVLSVYCF--AGLVDESKEQ----------FQEIKSSGILPSVMC 95
+ P E + + AG + +++ FQ++ I P+V+
Sbjct: 603 IDGAFQNKPGEDRILKMFEQLAAEKAGHLKKNRSGRQDKHCILWLFQKMHELNIKPNVVT 662
Query: 96 YCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKL 155
+ +L + N ++DA LLD + + ++ VT ++ G E W E +FD+L
Sbjct: 663 FSAILNACSLCNSYEDASLLLDTLRLFD-NQVYGVTNGLLMGY--REQVWLSAETLFDEL 719
Query: 156 NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV---DVH 212
C FYNAL + LW G + A V+ E +R ++ K WS+ D+H
Sbjct: 720 MCMDPSTSSAFYNALTDMLWHFGQKRGAEMVVIEGRRRNVW-------KGEWSISCLDLH 772
Query: 213 RMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
M G A + WL ++ G LP+ ++
Sbjct: 773 LMSCGAACAMVHSWLLSLHSSLFQGIQLPKFVNILT 808
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 44/244 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+++ Q +LS M + + ++N ++ + G+ + A + + EM R PN T
Sbjct: 333 GMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTY 392
Query: 62 EAVLSVYCFAGL-----------------------------------VDESKEQFQEIKS 86
A++ Y A L +DE+ E+ +E++
Sbjct: 393 SAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCKEMER 452
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI----KGEFDDE 142
SGI V+ Y LL+ Y K +D+ L +EM I MI KGE E
Sbjct: 453 SGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYPNTLTYSTMIDMYTKGEMFQE 512
Query: 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
+ E+ +L + + FY+A+++ L GL E + +L ++G+ P +
Sbjct: 513 AMDVYREFKMARLEID-----VVFYSAIIDTLCKNGLMESSIMLLMAMMEKGIKPNVVTF 567
Query: 203 NKLV 206
N ++
Sbjct: 568 NSII 571
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 12/204 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ R G SF+A+I AF + GRF +A+ + M PN T +++
Sbjct: 234 GLFERARLEGYGSTVHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDAG 293
Query: 69 CFAGL-VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISN 126
+ D + + E+ ++G++P + Y LL+V A W+ A LL EM H + +
Sbjct: 294 AKGEVSFDVVVKFYDEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPD 353
Query: 127 IHQVTGQM----IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ + G+ D + VF++++ + + Y+A+++ L E
Sbjct: 354 VFTYNTYLDTLCKAGQID------LARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLED 407
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A + +E R + + +N LV
Sbjct: 408 ALNLYEEMKLRSVCLDRVSYNTLV 431
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+Y E + + M + N+ +++ +I+ + +G F+EA+ Y E + R + +
Sbjct: 473 GMYDEVRRLFEEMKARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFY 532
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C GL++ S + GI P+V+ + ++ +S + YG+ +
Sbjct: 533 SAIIDTLCKNGLMESSIMLLMAMMEKGIKPNVVTFNSIIDASQQSPTLE--YGV--NGSS 588
Query: 122 NRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
+ I I Q + +I G F ++ + +F++L E G
Sbjct: 589 DAIDYPIEQSSPIVIDGAFQNKPGEDRILKMFEQLAAEKAG 629
>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
Length = 586
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 66/120 (55%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ A+ + M SG+ N+ ++N +I + + G A++ Y +M ++RC P+ T
Sbjct: 338 AGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVT 397
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ YC G +D++ + ++ I P+V + +++ K NR D+A LL+E++
Sbjct: 398 FSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELN 457
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 11/203 (5%)
Query: 10 ILSRMSESGVA-RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L R+ GV N +F +VI + + G+ E+A+ Y +M PN T +++ Y
Sbjct: 311 VLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGY 370
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNI 127
G + + E +Q++ P V+ + L+ Y + + DDA + +M +RI N+
Sbjct: 371 GKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNV 430
Query: 128 HQ---VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF-YNALLEALWCLGLRERA 183
+ + + K DE+ + ++LN F YN +++ L G + A
Sbjct: 431 YTFSIIIHSLCKQNRSDEAIC-----LLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEA 485
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+ ++G P+ + + L+
Sbjct: 486 NLIRKGMEEKGCRPDKYTYTILI 508
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/188 (18%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SFN VI+ + G+ ++A++ M + C P+ T ++ C V E + +
Sbjct: 256 SFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRL 315
Query: 85 KSSGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK--GEFDD 141
+ G+ +P+V+ + +++ Y K+ + +DA + ++M + I +I G+ D
Sbjct: 316 QRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGD 375
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+ V +L C + +++L++ G + A R+ + + + P ++
Sbjct: 376 LGSAVEVYQQMTRLRCPP---DVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYT 432
Query: 202 HNKLVWSV 209
+ ++ S+
Sbjct: 433 FSIIIHSL 440
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD--PNERTLEAVLSV 67
I S M++ + N +F+ +I + + R +EAI E+ +R D P V+ V
Sbjct: 417 IWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNEL-NLRPDIAPQAFIYNPVIDV 475
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G VDE+ + ++ G P Y +L+ Y +R +A EM
Sbjct: 476 LCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 527
>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
Length = 548
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 96/197 (48%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M + + N +++A+++AF + G+ EA + + EM ++ DP+ T ++++ C
Sbjct: 247 LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLC 306
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+DE+ + F + S G L V+ Y L+ + K+ R +D L EM + +
Sbjct: 307 LHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTV 366
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I+G F + E+ F +++ G + YN LL L G E+A + ++
Sbjct: 367 TYNTLIQGFFQAGDVDKAQEF-FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 425
Query: 190 ATKRGLFPELFRHNKLV 206
KR + ++ + ++
Sbjct: 426 MQKREMDLDIVTYTTVI 442
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 94/199 (47%), Gaps = 3/199 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+IL +M + G + + +++ F + R +A+ +M ++ P+ A++
Sbjct: 141 SILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSL 200
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C V+++ + F+EI+ GI P+V+ Y L+ S+RW DA LL +M +I+ +
Sbjct: 201 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP-N 259
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVL 187
+T + F + +F+++ + Y++L+ L CL R + A ++
Sbjct: 260 VITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGL-CLHDRIDEANQMF 318
Query: 188 DEATKRGLFPELFRHNKLV 206
D +G ++ +N L+
Sbjct: 319 DLMVSKGCLADVVSYNTLI 337
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
MS+ G+ N+ ++N +I+ F Q G ++A + + +M+ P+ T +L C G
Sbjct: 356 MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 415
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL-----LDEMHTNRISNIH 128
++++ F++++ + ++ Y ++ K+ + ++A+ L L + + ++
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTT 475
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159
++G KG + VE ++ K+ EG
Sbjct: 476 MMSGLCTKGLLHE------VEALYTKMKQEG 500
>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 788
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 4/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + +L M S + ++N +I+A + GR EA+ V M K PN T
Sbjct: 383 SGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVT 442
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
A++ YC V+ +K+ F + SG+ P ++ Y +L+ Y K+ D+A L EM
Sbjct: 443 YNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMR 502
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
H N I +I +I G + V+ + D++ G + YN LL+A
Sbjct: 503 HKNLIPDIASYNS-LIDG-LCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQP 560
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
++A + + + G++P+ + ++ +V
Sbjct: 561 FDKAISLFRQIVE-GIWPDFYTNHAIV 586
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E +L++M V + +FN +I+A + GR EA M K P+ T
Sbjct: 244 GRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTY 303
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ YC V E++E F + G+ P V+ Y +L+ Y K+ D+A L E+
Sbjct: 304 NALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCN 363
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G + V+ + D+++ + YN L++AL G
Sbjct: 364 KNLVPTIASYNSLIDG-LCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRIL 422
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A VL K+G+ P + +N ++
Sbjct: 423 EALGVLVMMMKKGVKPNIVTYNAMM 447
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E Q +L+ MS+ G + ++NA++E + EA + + M K +P+
Sbjct: 279 GRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNY 338
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC +VDE+ F+E+ + ++P++ Y L+ S R LLDEMH
Sbjct: 339 NVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHG 398
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ VT ++ E V + +G + YNA+++ +CL
Sbjct: 399 SA-QPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDG-YCLRNNV 456
Query: 182 RAAR-VLDEATKRGLFPELFRHNKLV 206
A+ + + K GL P++ +N L+
Sbjct: 457 NVAKDIFNRMVKSGLEPDILNYNVLI 482
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 5/200 (2%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
CQ +L++ G + ++ +I + G+ + A+ EMEK PN A++
Sbjct: 148 CQNLLAQ----GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALID 203
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
C G V ++ +I GIL + Y L+ RW + LL +M + +
Sbjct: 204 GLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENV-D 262
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
T ++ E + V ++ G + YNAL+E A +
Sbjct: 263 PDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAREL 322
Query: 187 LDEATKRGLFPELFRHNKLV 206
+ KRGL P++ +N L+
Sbjct: 323 FNRMVKRGLEPDVLNYNVLI 342
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 85/211 (40%), Gaps = 13/211 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y ++ +++ G++ + +F +I + A + K PN T
Sbjct: 69 GHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTF 128
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C G++ ++ + Q + + G L Y L+ +K+ + A LL EM
Sbjct: 129 NTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEK 188
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN-CEGYG-----LGMRFYNALLEALW 175
+ + + +I G D +V D L C G L YN+L++
Sbjct: 189 SSVQPNLVMYSALIDGLCKD-------GFVSDALGLCSQIGERGILLDAVTYNSLIDGCC 241
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G + ++L + + + P+ + N L+
Sbjct: 242 SVGRWQEVTQLLTKMVRENVDPDDYTFNILI 272
>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
Length = 820
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 99/199 (49%), Gaps = 5/199 (2%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +M G ++++ S+ A+IE F + GR +EA++ + E+E+ P+ T A++
Sbjct: 184 QDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ----PDMYTHAALVKG 239
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C A +E Q++K G P+ Y L+ ++ + + ++A +L+EM N +
Sbjct: 240 LCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPC 299
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
VT + + E VF+ + +G + YNA+++ +G +A +L
Sbjct: 300 -AVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALL 358
Query: 188 DEATKRGLFPELFRHNKLV 206
D+ + G+ P++ +N L+
Sbjct: 359 DQMRECGVEPDVVTYNLLI 377
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 45/228 (19%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + +L+ M ++G+ + + AV+ A+ + GR A++ + M+ C+PN T A+
Sbjct: 282 EEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAM 341
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ +C G V ++ +++ G+ P V+ Y +L
Sbjct: 342 VQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLL------------------------- 376
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG--MRFYNALLEALWCLGLRER 182
+ GQ I G ES ++++ + EG GL YN L++AL G +
Sbjct: 377 -----IRGQCIDGHI--ESAFRLLRLM------EGNGLAADQYTYNVLIDALCKTGKVDE 423
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
A + D RG+ P N + ++ ++ + +GG + +L KM
Sbjct: 424 ACSLFDGLEYRGIRP-----NSVTFNTVINGLCKGGKFDVACTFLEKM 466
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G+A + ++N +I+A + G+ +EA + +E PN T V++ C
Sbjct: 392 LLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLC 451
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G D + +++ S+G P Y + K+ + +DEM +
Sbjct: 452 KGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKP-ST 510
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V ++ E N+ + ++ ++ G + Y + A G A V+ E
Sbjct: 511 VNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVME 570
Query: 190 ATKRGLFPELFRHNKLV 206
K G+ + +N L+
Sbjct: 571 MKKGGIIVDAMAYNTLI 587
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 88/240 (36%), Gaps = 11/240 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ + G+ NS +FN VI +GG+F+ A +M C P+ T
Sbjct: 419 GKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTY 478
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ C E E+ + PS + Y +++ K YGL +
Sbjct: 479 SPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERN----YGLATRIWG 534
Query: 122 NRIS---NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+S + VT + +E E V ++ G + YN L++ +G
Sbjct: 535 QMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIG 594
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW----LNKMYEMF 234
+ A +L T P F L+ + R+ E SVW L ++E+F
Sbjct: 595 KTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFELF 654
>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
Length = 581
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 66/120 (55%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ A+ + M SG+ N+ ++N +I + + G A++ Y +M ++RC P+ T
Sbjct: 333 AGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVT 392
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ YC G +D++ + ++ I P+V + +++ K NR D+A LL+E++
Sbjct: 393 FSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELN 452
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 89/200 (44%), Gaps = 5/200 (2%)
Query: 10 ILSRMSESGVA-RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L R+ GV N +F +VI + + G+ E+A+ Y +M PN T +++ Y
Sbjct: 306 VLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGY 365
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNI 127
G + + E +Q++ P V+ + L+ Y + + DDA + +M +RI N+
Sbjct: 366 GKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNV 425
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF-YNALLEALWCLGLRERAARV 186
+ T +I ++ + ++LN F YN +++ L G + A +
Sbjct: 426 Y--TFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLI 483
Query: 187 LDEATKRGLFPELFRHNKLV 206
++G P+ + + L+
Sbjct: 484 RKGMEEKGCRPDKYTYTILI 503
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/188 (18%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SFN VI+ + G+ ++A++ M + C P+ T ++ C V E + +
Sbjct: 251 SFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRL 310
Query: 85 KSSGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK--GEFDD 141
+ G+ +P+V+ + +++ Y K+ + +DA + ++M + I +I G+ D
Sbjct: 311 QRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGD 370
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+ V +L C + +++L++ G + A R+ + + + P ++
Sbjct: 371 LGSAVEVYQQMTRLRCPP---DVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYT 427
Query: 202 HNKLVWSV 209
+ ++ S+
Sbjct: 428 FSIIIHSL 435
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD--PNERTLEAVLSV 67
I S M++ + N +F+ +I + + R +EAI+ E+ +R D P V+ V
Sbjct: 412 IWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNEL-NLRPDIAPQAFIYNPVIDV 470
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G VDE+ + ++ G P Y +L+ Y +R +A EM
Sbjct: 471 LCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 522
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L+ MS G+ N+ FN +I AF + R EA++ + EM + C P+ T
Sbjct: 438 GKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTF 497
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+++S C + + +++ S G++ + + Y L+ + + +A L++EM
Sbjct: 498 NSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF 557
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ I+ + G GE D + +F+K+ +G+ N L+ L
Sbjct: 558 QGSPLDEITYNSLIKGLCRAGEVDKARS------LFEKMLRDGHAPSNISCNILINGLCR 611
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G+ E A E RG P++ N L+
Sbjct: 612 SGMVEEAVEFQKEMVLRGSTPDIVTFNSLI 641
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 16/205 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M GV N+ ++N +I AF + G +EA K EM +E T +++ C
Sbjct: 516 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLC 575
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNRIS 125
AG VD+++ F+++ G PS + +L+ +S ++A EM T I
Sbjct: 576 RAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIV 635
Query: 126 NIHQVTGQMIK-GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + + + G +D +F KL EG +N L+ L G A
Sbjct: 636 TFNSLINGLCRAGRIEDGLT------MFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDAC 689
Query: 185 RVLDEATKRGLFPELFRHNKLVWSV 209
+LDE + G P N WS+
Sbjct: 690 LLLDEGIEDGFVP-----NHRTWSI 709
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 6/199 (3%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L M++ G NS + +I + + R EA++ EM + C P+ T V+
Sbjct: 238 SLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGL 297
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C ++E+ + + G P + Y L+ K R D A L + I +
Sbjct: 298 CKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFN 357
Query: 129 Q-VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ G + G DD + D + G + YN+L+ W GL A VL
Sbjct: 358 TLIHGFVTHGRLDDAK-----AVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412
Query: 188 DEATKRGLFPELFRHNKLV 206
+ +G P ++ + LV
Sbjct: 413 HDMRNKGCKPNVYSYTILV 431
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 93/210 (44%), Gaps = 10/210 (4%)
Query: 2 GLYKECQAILSRMSES-GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + +A+LS M S G+ + ++N++I + + G A++ +M C PN +
Sbjct: 367 GRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYS 426
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ +C G +DE+ E+ + G+ P+ + + L++ + K +R +A + EM
Sbjct: 427 YTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMP 486
Query: 121 TNRISNIHQVTGQMIKG--EFDD--ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+I G E D+ + W + + + EG YN L+ A
Sbjct: 487 RKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMI-----SEGVVANTVTYNTLINAFLR 541
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A ++++E +G + +N L+
Sbjct: 542 RGEIKEARKLVNEMVFQGSPLDEITYNSLI 571
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N V+E G + A + +M + P T V+ +C +D + +++
Sbjct: 184 SYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDM 243
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G +P+ + Y L+ +K NR ++A LL+EM
Sbjct: 244 TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 278
>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 94/206 (45%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY+E A+ M G + ++N +++ + + R +EAI+ EME C P+ T
Sbjct: 117 GSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVT 176
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++S Y GL++E+ E ++ GI V Y +L+ + ++ + + A + +EM
Sbjct: 177 YNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMR 236
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T +IK + +M++ VF+++ + +N LL G+
Sbjct: 237 TAGCKPNICTFNALIKMHGNRGKFAEMMK-VFEEIKICCCVPDIVTWNTLLAVFGQNGMD 295
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ V E + G PE +N L+
Sbjct: 296 SEVSGVFKEMKRVGFVPERDTYNTLI 321
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 86/213 (40%), Gaps = 16/213 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVE-MEKVRCDPNERT 60
G Y+E + +M E G ++N ++ + + G I E M+ P+E T
Sbjct: 47 GRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYT 106
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ L +E+ F+++KS G +P + Y LL VY KS R +A +L EM
Sbjct: 107 YNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREME 166
Query: 121 TNRISNIHQVTGQMIKGEFDD-------ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
N S +I D E QMVE G L + Y A+L
Sbjct: 167 VNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVE--------RGIKLDVFTYTAMLSG 218
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G E A RV +E G P + N L+
Sbjct: 219 FVRTGKDESAMRVFEEMRTAGCKPNICTFNALI 251
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 7/209 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + M G D++N +I A+ + G F++A+ Y M P+ T
Sbjct: 293 GMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTY 352
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
AVL+ GL ++S++ E++ P+ + +C LL YA L +E+
Sbjct: 353 NAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEI-- 410
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMV---EYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
S + + ++K S ++ E F +L +G+ + NA++
Sbjct: 411 --CSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQ 468
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVW 207
+ + +L+ + G P L +N L++
Sbjct: 469 MVTKTNEILNFMKESGFTPSLATYNSLMY 497
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M +G N +FNA+I+ G+F E +K + E++ C P+ T +L+V+
Sbjct: 231 VFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFG 290
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG----LLDEMHTNRIS 125
G+ E F+E+K G +P Y L++ Y++ +D A +LD T +S
Sbjct: 291 QNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLS 350
Query: 126 NIHQVTGQMIKGEFDDESNWQMVE 149
+ V + +G ++S + E
Sbjct: 351 TYNAVLAALARGGLWEQSEKILAE 374
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 92/216 (42%), Gaps = 1/216 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ + IL+ M + N + +++ A+ G + E+ +P+
Sbjct: 362 GGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVL 421
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
L+ ++ V L+ E++ F E+K G P + ++A+Y + +L+ M
Sbjct: 422 LKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMK 481
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + ++ E N++ E V ++ +G + YN ++ A G
Sbjct: 482 ESGFTPSLATYNSLMYMHSQSE-NFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRM 540
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ A+ + E + GL P++ +N V S M+E
Sbjct: 541 KEASHIFSEMRESGLIPDVITYNTFVASYAADSMFE 576
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL+ M ESG + ++N+++ Q FE + + E+ P+ + V+ YC
Sbjct: 476 ILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYC 535
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
G + E+ F E++ SG++P V+ Y +A YA + +++A
Sbjct: 536 RNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEA 578
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N ++ F Q G E + EM++V P T ++S Y G D++ ++ +
Sbjct: 281 TWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRM 340
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+GI P + Y +LA A+ W+ + +L EM
Sbjct: 341 LDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQ 376
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE I S M ESG+ + ++N + ++ FEEAI M K C PN+ T
Sbjct: 538 GRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTY 597
Query: 62 EAVLSVYC 69
+V+ YC
Sbjct: 598 NSVIDGYC 605
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 95/240 (39%), Gaps = 34/240 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + M S V+ N ++N +I F G ++ + + EME+ C PN T
Sbjct: 192 GSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVT 251
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ YC G +DE+ + + S G+ P+++ Y +++ + +A+ +L+EM
Sbjct: 252 YNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMG 311
Query: 121 TNRIS-----------------NIHQ---VTGQMIKGEFDDE--------------SNWQ 146
+ N HQ + +M++ N
Sbjct: 312 YKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLN 371
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
FD++ G R Y L++ GL A R+L+E T+ G P + +N +
Sbjct: 372 RAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFI 431
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 100/217 (46%), Gaps = 2/217 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE IL M G + ++N ++ + + G F +A+ + EM + P+ T
Sbjct: 298 GSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTY 357
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ C A ++ + E F +++ G+ P+ Y L+ +++ ++AY +L+EM
Sbjct: 358 TALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTE 417
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ S I G E + + V + + +G + Y+ ++ G +
Sbjct: 418 SGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVE-KGLAPDVVSYSTIISGFCRKGELD 476
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV-DVHRMWEG 217
RA ++ E ++G+ P+ ++ L+ + ++ R+ E
Sbjct: 477 RAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEA 513
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E IL+ M+ESG + + ++NA I R EEA+ EM + P+ +
Sbjct: 403 GLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSY 462
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++S +C G +D + + QE+ G+ P + Y L+ + R +A L EM
Sbjct: 463 STIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM 520
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 1/194 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M G+ N ++ +I+ F + G EA + EM + P+ T A + +C
Sbjct: 379 QMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLE 438
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++E+ QE+ G+ P V+ Y +++ + + D A+ + EM +S
Sbjct: 439 RMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYS 498
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+I+G + + + + L+ G Y L+ A G +A + DE
Sbjct: 499 SLIQGLCEMRRLTEACDLSQEMLDM-GLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIH 557
Query: 193 RGLFPELFRHNKLV 206
+G P+ ++ L+
Sbjct: 558 KGFLPDAVTYSVLI 571
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 94/235 (40%), Gaps = 30/235 (12%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E GV+ ++ +++++I+ + R EA EM + P+E T +++ YC G
Sbjct: 485 MVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGD 544
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++++ E+ G LP + Y +L+ K R +A LL ++
Sbjct: 545 LNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKL-------------- 590
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ES V Y NC + + AL++ GL A RV + +R
Sbjct: 591 -----IYEESVPSDVTYDTLIENCS--NIEFKSVVALIKGFCMKGLMHEADRVFESMVER 643
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
P + V++V +H GG + N EM G +P TV+
Sbjct: 644 NHKP-----GEAVYNVIIHGHCRGG---NLPKAFNLYKEMIHSG-FVPHTVTVIT 689
>gi|359490014|ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Vitis vinifera]
Length = 494
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 95/211 (45%), Gaps = 13/211 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G++K+ I+ + E GV+ + +N++I+ F + G EA++ + +M++ P+ T
Sbjct: 177 GMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTW 236
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C AG V ++ E F +++ G+ P + +++ + +WD ++
Sbjct: 237 NSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKWD----VIKRNFE 292
Query: 122 NRISNIHQVTGQM------IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
N HQ +G + I G++ +Q E L EG + L A
Sbjct: 293 NMKCRGHQRSGAIYAILVDIYGQY---GRFQGPEECISALKSEGIQPSASMFCVLANAYA 349
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
GL E+ +VL G+ P L N L+
Sbjct: 350 QQGLCEQTVKVLQLMETEGIEPNLIMLNMLI 380
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L++M G + + S+ VIEA GR EA + EM + + R +L
Sbjct: 45 LLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLRSCL 104
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL++ + + E+ + GI + Y L+ Y ++ R +D + ++ EM +
Sbjct: 105 RKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSF 164
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V ++I G + D W+ + ++ G L R YN++++ G A V ++
Sbjct: 165 VYSKVI-GVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEK 223
Query: 190 ATKRGLFPELFRHNKLV 206
+ G+ P++ N L+
Sbjct: 224 MQEEGVKPDIMTWNSLI 240
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + +S + G+ ++ F + A+ Q G E+ +K ME +PN L
Sbjct: 317 GRFQGPEECISALKSEGIQPSASMFCVLANAYAQQGLCEQTVKVLQLMETEGIEPNLIML 376
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ + AG E+ + IK +GI P V+ Y L+ ++ ++D + +EM +
Sbjct: 377 NMLINAFGIAGRHLEALSVYHHIKDTGISPDVVTYSTLMKACIRARKFDKVPEIYEEMES 436
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/206 (16%), Positives = 82/206 (39%), Gaps = 36/206 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNA--------------------------------- 28
GL + +L+ M G+ RN ++ A
Sbjct: 107 GLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVY 166
Query: 29 --VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
VI +R G +++A++ E+ ++ ++R +++ + G + E+ E F++++
Sbjct: 167 SKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQE 226
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
G+ P +M + L+ + K+ A L +M + ++ +I ++ W
Sbjct: 227 EGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIIS-RLGEQGKWD 285
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLE 172
+++ F+ + C G+ Y L++
Sbjct: 286 VIKRNFENMKCRGHQRSGAIYAILVD 311
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ +L M G+ N N +I AF GR EA+ Y ++ P+ T
Sbjct: 352 GLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGRHLEALSVYHHIKDTGISPDVVTY 411
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILP 91
++ A D+ E ++E++S+G P
Sbjct: 412 STLMKACIRARKFDKVPEIYEEMESAGCTP 441
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 3/195 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G N ++N +I G EEA++ +M++ C PN T ++ + +G
Sbjct: 340 MIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGD 399
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ + E + + S G P+V+ Y ++ V K++ +D A L+++M +
Sbjct: 400 LVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNT 459
Query: 134 MIKGEF-DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
IKG + W M + +++ G + YN LL+AL+ + E A + E
Sbjct: 460 FIKGLCGNGRVEWAM--KLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEA 517
Query: 193 RGLFPELFRHNKLVW 207
R L P L +N +++
Sbjct: 518 RNLQPNLVTYNTVLY 532
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 108/252 (42%), Gaps = 39/252 (15%)
Query: 3 LYKEC-----QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN 57
L +EC Q IL +M G+ D F +I +++ G E+A+K + + + C P
Sbjct: 84 LGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPT 143
Query: 58 ERTLEAVLSVYCFAGLVDESKEQ-----FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
R +L L+ E+K Q + +K G++P+V Y +LL K++R D A
Sbjct: 144 VRIYNHLLD-----ALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAA 198
Query: 113 YGLLDEMHT-----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFY 167
+ L EM + ++ V+ G+ DD + + Y
Sbjct: 199 HKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELA-----------GRFKPSVPVY 247
Query: 168 NALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227
NAL++ + G E A ++L E G+ P + ++ ++ S+ V G A +++
Sbjct: 248 NALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCV----SGNVELAFALF- 302
Query: 228 NKMYEMFMMGED 239
+MF+ G D
Sbjct: 303 ---AQMFLRGCD 311
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 5/200 (2%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ ++M G N +F +I+ G+ EA+ + M + C+PN ++
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--HTNRISN 126
C G ++E+ + +++ SG LP+V Y +L+ +AKS A + M H R N
Sbjct: 360 CSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCR-PN 418
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ VT + S + + +K+ EG +N ++ L G E A ++
Sbjct: 419 V--VTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKL 476
Query: 187 LDEATKRGLFPELFRHNKLV 206
L+ G P + +N+L+
Sbjct: 477 LERMQGHGCLPNITTYNELL 496
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 83/197 (42%), Gaps = 2/197 (1%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
+RM G N ++ +++ + F++A +M C PN T + C
Sbjct: 408 NRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGN 467
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131
G V+ + + + ++ G LP++ Y LL + N++++A+GL E+ + + VT
Sbjct: 468 GRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQP-NLVT 526
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+ F +F K G YN ++ A G + AA++++ +
Sbjct: 527 YNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVS 586
Query: 192 K-RGLFPELFRHNKLVW 207
+ P++ + L+W
Sbjct: 587 SMKEWHPDIITYTSLIW 603
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 18/194 (9%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM G N ++N +++A + ++EEA + E+E PN T VL +
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFS 535
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD------EMHTNR 123
AG++ E+ + F + G P + Y ++ Y K + A L++ E H +
Sbjct: 536 RAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDI 595
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I+ + G NW +E DK +G +NAL+ +
Sbjct: 596 ITYTSLIWG---------ACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGH 646
Query: 181 ERAARVLDEATKRG 194
+LD+ ++G
Sbjct: 647 MGPIHILDDILRKG 660
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 55/114 (48%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
++ + +++ +M+ G N+ +FN I+ GR E A+K M+ C PN T
Sbjct: 434 MFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYN 493
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+L +E+ FQEI++ + P+++ Y +L ++++ +A L
Sbjct: 494 ELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLF 547
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/241 (17%), Positives = 98/241 (40%), Gaps = 14/241 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M ++GV N S++ +I + G E A + +M CD N T ++
Sbjct: 266 LLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCF 325
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-TNRISNIH 128
G + E+ + ++ + G P+V+ Y L+ + ++A + D+M + + N+
Sbjct: 326 MRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNV- 384
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
T ++ F + ++++ G + Y +++ L + ++A +++
Sbjct: 385 -TTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVE 443
Query: 189 EATKRGLFPELFRHNKLV----------WSVD-VHRMWEGGAYTAISVWLNKMYEMFMMG 237
+ T G P N + W++ + RM G I+ + + +F M
Sbjct: 444 KMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMN 503
Query: 238 E 238
+
Sbjct: 504 K 504
>gi|410110125|gb|AFV61142.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
micromera]
Length = 434
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 100 LFREARSLISEMKTAGVMPNTTSYSTLLTMYXENKKFLEALSVFSEMREIKCXLDLTTCN 159
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 160 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 219
Query: 123 RI 124
I
Sbjct: 220 NI 221
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 62/118 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + +++ P+
Sbjct: 29 GLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKXCDYSKAISIFSRLKRSGFTPDLVAY 88
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 89 NAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYXENKKFLEALSVFSEM 146
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 169 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 228
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 229 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRS 288
Query: 122 NRISNIHQVTGQMI 135
+ + I Q+ Q +
Sbjct: 289 SGVE-IDQILFQTM 301
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N++I + + E+A EM+ +PN T
Sbjct: 205 LFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 264
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 265 TIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 324
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 325 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 375
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 376 KYSNVIEVFDKMRGLGYFPD 395
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 11/219 (5%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E +L M +G + +FN V++ F + E+A + Y M + P+ + +
Sbjct: 27 EESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHIL 86
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----- 119
+ G +DES + E+ G PS+ Y L+ AK+ R D A L DEM
Sbjct: 87 IHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGH 146
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
H +R+ + G G+ D S F ++ G + YN LL L G
Sbjct: 147 HPDRLMFYELILGLCQAGKVKDASER------FKQMPKHGCQPNVPVYNVLLHGLCSSGQ 200
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
E+A + E P++ +N L+ +V R E G
Sbjct: 201 LEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEG 239
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G N +F+ +I + G E+A++ + M + C PN+ T ++S C A
Sbjct: 246 MRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEK 305
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
V +++E F+++ + I P + Y L+A Y K D+A L EM
Sbjct: 306 VIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREM 351
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 84/207 (40%), Gaps = 2/207 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K+ +M + G N +N ++ G+ E+A + EM+ C P+ T
Sbjct: 163 AGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVT 222
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L C A V+E + F+ ++++G +P+V+ + L+ ++ + A + M
Sbjct: 223 YNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSML 282
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I G E Q E +F+K+ YN+L+ G
Sbjct: 283 EAGCKPNKYTYTTLISGLCRAEKVIQARE-LFEKMTQACIPPDAVAYNSLIAGYCKRGSM 341
Query: 181 ERAARVLDEAT-KRGLFPELFRHNKLV 206
+ A ++ E + GL P + N L+
Sbjct: 342 DEAEKLYREMSGGAGLQPTIVTFNTLI 368
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 7/208 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ILS M G + ++++++ A + R + A + EM + P+
Sbjct: 94 GKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMF 153
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C AG V ++ E+F+++ G P+V Y +LL S + + A L EM +
Sbjct: 154 YELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKS 213
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ S VT + D + VE +F+ + GY + ++ L+ L G
Sbjct: 214 HSCSP-DVVTYNTL---LDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTG 269
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
E+A V + G P + + L+
Sbjct: 270 ELEKALEVFGSMLEAGCKPNKYTYTTLI 297
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 56/116 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+++ M G+A +S ++ +I + + +EA++ Y +M + + + + + + C
Sbjct: 383 LVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLC 442
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
G +D++ F+ + SG +P+ + +L K R +DA L++ I+
Sbjct: 443 KTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKARDIT 498
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 102/225 (45%), Gaps = 2/225 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ RM G+A + ++N+V+ + G+ +E + + EM C PN T ++ +C
Sbjct: 477 LVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFC 536
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
++E+ + G++P + + L+ + ++ D AY L ++ S
Sbjct: 537 KINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATAD 596
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
T ++ G + + N QM E +F ++ +GY + Y L++ L +RA L E
Sbjct: 597 -TFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAE 655
Query: 190 ATKRGLFPELFRHNKLVWSVDV-HRMWEGGAYTAISVWLNKMYEM 233
+G P + +++ + + HR+ E A I V + + E+
Sbjct: 656 MISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVPEV 700
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 13/228 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E A++ RM + VA + ++N ++ + + +EA + M C P++ T
Sbjct: 260 GRLEEAVALVERMG-AYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTY 318
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC +G++ E+ E ++ G +P + YC L+ + A L +E
Sbjct: 319 NTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQA 378
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ V ++KG ++ V +++ EG + YN ++ L +G
Sbjct: 379 KDLKPDLVVYNSLVKGLCRQGLILHALQ-VMNEMVEEGCHPDIWTYNIIINGLCKMGNIS 437
Query: 182 RAARVLDEATKRGLFPELFRHNKLV------WSVD-----VHRMWEGG 218
AA V+++A +G P++F N L+ +D V RMW G
Sbjct: 438 DAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYG 485
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N++++ + G A++ EM + C P+ T +++ C G + ++ +
Sbjct: 388 YNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAI 447
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
G LP V + L+ Y K + D A L++ M T I+ +T +
Sbjct: 448 VKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAP-DVITYNSVLNGLCKAGKA 506
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+ V F+++ +G YN L+E + E A+ V+ + GL P+ N L
Sbjct: 507 KEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTL 566
Query: 206 V 206
+
Sbjct: 567 I 567
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 74/182 (40%), Gaps = 3/182 (1%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+ A I+A+ + GR A+ A+ M+ C P A++ A D++ + + +
Sbjct: 74 YVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRML 133
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
++G+ P + + L + + R A LL + +++G + +
Sbjct: 134 AAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGY 193
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
++FD++ + +N +L AL G + +L + KRG+ F N
Sbjct: 194 N-ARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCN-- 250
Query: 206 VW 207
+W
Sbjct: 251 IW 252
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E ++ RM + G+ ++ SFN +I F + G + A + ++++ T +
Sbjct: 542 EEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNIL 601
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ Y + +++ F E+ S G P + Y +L+ K+ D AY L EM
Sbjct: 602 IGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEM 656
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 16/185 (8%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ RM +SG + +FN++I F Q + ++A + M+K C PN T ++S C
Sbjct: 265 LIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLC 324
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI--SNI 127
AG +E+ E E+ GILP ++ Y L+ ++ ++ + + A+ + + M + I
Sbjct: 325 DAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGI 384
Query: 128 HQVT--GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
T ++K E DE+ + +++ +FD G + +N+L+E L C +R
Sbjct: 385 SYCTLAVALLKSERFDEA-FALLDNMFDA----GAIPNLFTFNSLMEGLCC-------SR 432
Query: 186 VLDEA 190
LDEA
Sbjct: 433 RLDEA 437
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E A+L M ++G N +FN+++E R +EA M +V CDP T E
Sbjct: 399 FDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEV 458
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ C AG VD++KE + S GI P V ++ A+ + D A D++
Sbjct: 459 LVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQV 514
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 36/231 (15%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M E G + + + +++++A G A++ + E V C P+ ++ C
Sbjct: 127 LLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYF--RESVECAPDSVLFNILVHGLC 184
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNI- 127
A + E+++ +E+ GI+P V+ Y L+ KS R ++A LL+ M ++ N+
Sbjct: 185 KANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLV 244
Query: 128 ------------------HQVTGQMIK-GEFDDESNWQMVEYVF---DKLN--CEGYGL- 162
HQ+ +MI+ G D + + F K++ CE L
Sbjct: 245 TYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLM 304
Query: 163 -------GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ YN L+ L G A +L E RG+ P++ +N L+
Sbjct: 305 KKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLI 355
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 90/194 (46%), Gaps = 3/194 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + ++ MSE G+ + ++N++I+ + R EEA + M K + PN T ++
Sbjct: 191 EARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLI 250
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
YC G + + + + SG P V+ + L++ + + ++ D A +L M +
Sbjct: 251 YGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCA 310
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
+I G D + E + +++ G + YN+L+ ++C + E+A
Sbjct: 311 PNLVTYNVLISGLCDAGRANEACE-LLSEMDGRGILPDIITYNSLI-GIFCRNFQIEQAF 368
Query: 185 RVLDEATKRGLFPE 198
++ + +RG+ P+
Sbjct: 369 QIQNLMVERGVIPD 382
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I + M E GV + S+ + A + RF+EA M PN T +++ C
Sbjct: 370 IQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLC 429
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ +DE++ ++ G P+ Y +L+ K+ R DDA +L M + I +
Sbjct: 430 CSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVS 489
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKL 155
+G ++ E + + FD++
Sbjct: 490 SSGTIVH-TLAREGKQDLALHYFDQV 514
>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Brachypodium distachyon]
Length = 821
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 3/208 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNE 58
G Y + A M + +A ++ + N VI + G++ EAI+ M ++ +C P+
Sbjct: 273 GSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDV 332
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T +++ Y G V++ K F + + G+ P+++ Y LL YA DA G+
Sbjct: 333 VTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKL 392
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ N + V+ + + + F ++ + YNAL++A G
Sbjct: 393 LKQNGLRP-DVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAG 451
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
+ + A +L E K G+ P++ + L+
Sbjct: 452 MFKEAISLLHEMEKDGIPPDVVSISTLL 479
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ + M ++ N S+NA+I+A+ G F+EAI EMEK P+ +
Sbjct: 415 SGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVS 474
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
+ +L+ + + + KS GI +++CY
Sbjct: 475 ISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCY 510
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 83/206 (40%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ S M ESG + ++ A+IEA+ G + A + EME P+
Sbjct: 591 GKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIIC 650
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ G E Q E+ +P + Y ++A + W A +++ +
Sbjct: 651 SSLMEAL-NRGSQHERVLQLMELMKEKCIPLNQKAYFEIIASCSMLRDWKTASEIIEHLD 709
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ +S+I T + + + +F K+ +G+ Y LL L +G
Sbjct: 710 SS-LSSISVGTLNHLLTFLGKCGKTECMMKLFYKMMSSCSTVGVSTYTVLLRNLLAVGKW 768
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ VL G+ P L+ + ++
Sbjct: 769 RKYIEVLQWMEDAGVSPTLYMYQNVL 794
>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 999
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 1/202 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + I M SG+ N ++ A+I+ F + G EEA++ EM N T A+
Sbjct: 328 KEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAM 387
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ AG + ++ F E+ +GI P Y +L+ Y KS+ A LL EM ++
Sbjct: 388 IGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKL 447
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G S+ Q V D++ G + Y L++A E A
Sbjct: 448 TPSPFTYSVLISG-LCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAI 506
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+L G+ P+LF +N L+
Sbjct: 507 ELLKIMIANGVLPDLFCYNCLI 528
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 90/197 (45%), Gaps = 5/197 (2%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + +L M E G+ N+ ++ A I + + G + A + + +M PN +
Sbjct: 538 EEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTIL 597
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL-LDEMHTNR 123
+ +C G E+ F+ + G++P + Y ++ +K+ + +A G+ L + T
Sbjct: 598 IKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGV 657
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL-WC-LGLRE 181
+ ++ + +I G F E + + ++D++ G + YN L+ +C G
Sbjct: 658 VPDVF-LYNSLISG-FCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLT 715
Query: 182 RAARVLDEATKRGLFPE 198
A ++ DE +G+ P+
Sbjct: 716 EAFKLFDEMISKGISPD 732
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 4/209 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + + ++GV + +N++I F + G E+A + Y EM +PN
Sbjct: 640 GKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVY 699
Query: 62 EAVLSVY--CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ Y C +G + E+ + F E+ S GI P YC+L+ K + A L E
Sbjct: 700 NTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEA 759
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ ++ + F +FD + + + Y L++A +
Sbjct: 760 QQKSVGSLSAFNSLI--DSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEM 817
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWS 208
E A ++ + R + P + L+ S
Sbjct: 818 MEEAEQLFLDMETRNIIPNTLTYTSLLLS 846
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 3/204 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y+ +L M +GV + +N +I + + EEA V+M + PN T A
Sbjct: 502 YEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGA 561
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTN 122
+++Y +G + ++ F+++ SSGI+P+ + Y +L+ + +A M
Sbjct: 562 FINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKG 621
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
I +I + I + VF K G + YN+L+ G E+
Sbjct: 622 LIPDIRAYSA--IIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEK 679
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A+++ DE G+ P + +N L+
Sbjct: 680 ASQLYDEMLHNGINPNIVVYNTLI 703
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 1/196 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E I M G+ N ++NA+I + G +A+ + EM +P+ T
Sbjct: 360 GNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTY 419
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y + + ++ E E+K+ + PS Y +L++ S+ A +LD+M
Sbjct: 420 NLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIR 479
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N + + G +IK + ES ++M + + G + YN L+ L E
Sbjct: 480 NGVKPNVFMYGTLIKA-YVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVE 538
Query: 182 RAARVLDEATKRGLFP 197
A +L + ++G+ P
Sbjct: 539 EAKMLLVDMGEKGIKP 554
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 2/199 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ +LS M E N ++NA I Q G +EA++ M + P+ T ++
Sbjct: 262 KMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDG 320
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+C E+K F+ + SSG+ P+ Y L+ + K ++A + DEM T R +
Sbjct: 321 FCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMIT-RGLKL 379
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ VT + G +F+++ G YN L++ +A +L
Sbjct: 380 NVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELL 439
Query: 188 DEATKRGLFPELFRHNKLV 206
E R L P F ++ L+
Sbjct: 440 AEMKARKLTPSPFTYSVLI 458
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 83/205 (40%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M E G+ + ++ +++ F + R +EA + M +PN T
Sbjct: 290 GAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTY 349
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ + G ++E+ E+ + G+ +V+ Y ++ AK+ A L +EM
Sbjct: 350 TALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLM 409
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I +I G + E + ++ Y+ L+ L +
Sbjct: 410 AGIEPDTWTYNLLIDGYLKSHDMAKACE-LLAEMKARKLTPSPFTYSVLISGLCHSSDLQ 468
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A VLD+ + G+ P +F + L+
Sbjct: 469 KANEVLDQMIRNGVKPNVFMYGTLI 493
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+FN++I++F + G+ EA + + +M + PN T ++ Y A +++E+++ F ++
Sbjct: 769 AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDM 828
Query: 85 KSSGILPSVMCYCMLLAVYAK-SNRW 109
++ I+P+ + Y LL Y + NR+
Sbjct: 829 ETRNIIPNTLTYTSLLLSYNQIGNRF 854
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 37/196 (18%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E+ + + ++ VI+A + G + EMEK C PN T A + C G
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK-ECKPNLFTYNAFIGGLCQTGA 291
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
VDE+ E + + G+ P Y +L+ + K R +A
Sbjct: 292 VDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEA--------------------- 330
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ +F+ + G Y AL++ G E A R+ DE R
Sbjct: 331 ---------------KLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITR 375
Query: 194 GLFPELFRHNKLVWSV 209
GL + +N ++ +
Sbjct: 376 GLKLNVVTYNAMIGGI 391
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 81/192 (42%), Gaps = 1/192 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + M + + N ++ +I+A+ + EEA + +++ME PN T ++L
Sbjct: 785 EARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLL 844
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
Y G + F+++++ GI + Y ++ + Y K + +A LL++ I
Sbjct: 845 LSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIK 904
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V +I E V + ++ E L + N LL + G + A++
Sbjct: 905 LEDDVFDALI-FHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASK 963
Query: 186 VLDEATKRGLFP 197
VL + G P
Sbjct: 964 VLGVMQRLGWVP 975
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 37/238 (15%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV--- 64
QA+L +M+++G A N ++ A+I+ + R +AI+ M + C+P+ T ++
Sbjct: 65 QALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHG 124
Query: 65 ---------------------------------LSVYCFAGLVDESKEQFQEIKSSGILP 91
+S C AG +D+ E +E+ GI P
Sbjct: 125 LCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISP 184
Query: 92 SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYV 151
V+ +C +++ K+NR DDA+ + M R +T ++ + VE V
Sbjct: 185 DVVTFCSIISGLCKANRIDDAFQVFKGM-LERGCVPDSLTYSIMLDNLSRANRLDTVEEV 243
Query: 152 FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ + G+ Y L+ AL G E A+ ++A + G E++ HN + ++
Sbjct: 244 LEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGAL 301
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/245 (19%), Positives = 102/245 (41%), Gaps = 22/245 (8%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M ESG + ++N I + G+ ++ ++ EM++ P+ T +++S C A
Sbjct: 142 MIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANR 201
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNRISNIHQ 129
+D++ + F+ + G +P + Y ++L +++NR D +L+ M H +
Sbjct: 202 IDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAP 261
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ +I+ + ++W +++ G + + +NA + AL G A +L
Sbjct: 262 LIHALIRAGDIESASW-----AYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLG 316
Query: 190 ATKRGLFPELFRHNKLV------------WSVDVHRMWEGGAYTAISVWLNKMYEMFMMG 237
+ G P L +N ++ W + +M + G ++ N + F
Sbjct: 317 MIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLS-RKMLDSGCCKPDVIFFNTLISGFCKA 375
Query: 238 EDLPQ 242
L Q
Sbjct: 376 GRLSQ 380
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERT 60
G + + IL M ESG N S+N VI+ + G ++A K +M + C P+
Sbjct: 305 GKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIF 364
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++S +C AG + ++++ +E+K+ I +P V+ Y ++ +K A LL+EM
Sbjct: 365 FNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEM 424
Query: 120 H 120
Sbjct: 425 Q 425
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M+ +G + ++ +I+ + G + A +M C PN T A++ C
Sbjct: 32 LLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLC 91
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--HTNRISNI 127
A ++ + + + SG P ++ Y L+ +NR DDA +L E+ + RI ++
Sbjct: 92 KARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDV 151
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E+G + NA I A + G+F A + M + PN + V+ C +G VD
Sbjct: 284 EAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVD 343
Query: 76 ESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT-GQ 133
++ + +++ SG P V+ + L++ + K+ R A LL EM I VT
Sbjct: 344 DAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNT 403
Query: 134 MIKGE 138
MI G+
Sbjct: 404 MIDGQ 408
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +SG S ++ +I A + G E A AY + + C T A + C
Sbjct: 243 VLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALC 302
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+G +K + SG LP+++ Y ++ KS DDA+ L +M
Sbjct: 303 RSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKM 352
>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 36/198 (18%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L M GV N S+ I Q GR EEA + +ME+ C P+ T ++ +
Sbjct: 227 GLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQIL 286
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C AG + ++K+ F ++K+S P + Y LL D G
Sbjct: 287 CDAGRLADAKDVFWKMKASDQKPDRVTYITLL----------DKCG-------------- 322
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
D + + V +++ L +GY + Y A ++AL +G + A V D
Sbjct: 323 ------------DSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFD 370
Query: 189 EATKRGLFPELFRHNKLV 206
E ++G+ P+ + +N L+
Sbjct: 371 EMKQKGIIPQQYSYNSLI 388
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 97/212 (45%), Gaps = 2/212 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ + GV+ + S+NA+I + A + + EM+++ CDP+E T +L
Sbjct: 753 LVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMG 812
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ +++ + +E+ + G + + Y +++ KS D+A L ++ + S
Sbjct: 813 KSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPC 872
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
G ++ G D N + E +FD++ G YN LL G E+ + +
Sbjct: 873 TYGPLLDGLLKD-GNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFES 931
Query: 190 ATKRGLFPELFRHNKLVWSVDVH-RMWEGGAY 220
++G+ P++ + ++ ++ R+ +G +Y
Sbjct: 932 MVEQGMNPDIKSYTVVIDTLCADGRLNDGLSY 963
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
++++ G+ + ++N +I + GR EEA+ Y +MEK PN T +++ AG
Sbjct: 966 QLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAG 1025
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ + ++E+ + G P+V Y L+ Y+ S ++A+ M
Sbjct: 1026 KAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRM 1072
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 83/196 (42%), Gaps = 1/196 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + + NAV+ + GR A + + E++ + P+ T ++ A
Sbjct: 442 MKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASN 501
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
DE+ + F E+ + P V+ L+ + K+ R ++A+ + E+ +
Sbjct: 502 ADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNT 561
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ G E + V + + +N + + YN +L+ L G A +L T
Sbjct: 562 LLAG-LGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMN 620
Query: 194 GLFPELFRHNKLVWSV 209
G P+L +N +++ +
Sbjct: 621 GCMPDLSSYNTVMYGL 636
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 9/209 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M + G+ S+N++I F + RF A++ + M PN T
Sbjct: 360 GRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTH 419
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + +G ++ ++++ +KS GI+P V+ +L AK+ R A + E+
Sbjct: 420 VLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKA 479
Query: 122 NRISNIHQVTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
IS + MI K DE+ E + ++ C L M N+L++ L+
Sbjct: 480 MGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENR--CAPDVLAM---NSLIDMLYKA 534
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G A ++ E + L P +N L+
Sbjct: 535 GRGNEAWKIFYELKEMNLEPTDCTYNTLL 563
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 13/205 (6%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + S M G + +++ +++A + R E+ +K EM T ++S
Sbjct: 786 EELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISG 845
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM------HT 121
+ ++DE+ + ++ S G P+ Y LL K +DA L DEM
Sbjct: 846 LVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPN 905
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I NI + G I G D E ++ E + + +G ++ Y +++ L G
Sbjct: 906 CAIYNI-LLNGYRIAG--DTEKVCELFESMVE----QGMNPDIKSYTVVIDTLCADGRLN 958
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+ T GL P+L +N L+
Sbjct: 959 DGLSYFKQLTDMGLEPDLITYNLLI 983
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 58/113 (51%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + G++ ++ ++ +I+ + +EA+K + EM + RC P+ + +++ +
Sbjct: 473 VFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLY 532
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
AG +E+ + F E+K + P+ Y LLA + + + LL+ M++N
Sbjct: 533 KAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSN 585
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 79/205 (38%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + I + + G N S+ A ++A Q GR +EA+ + EM++ P + +
Sbjct: 325 GDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSY 384
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++S + A + + E F + G P+ + + + + KS A + M +
Sbjct: 385 NSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKS 444
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I V G + M + VF +L G Y +++ +
Sbjct: 445 KGIVP-DVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNAD 503
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++ E + P++ N L+
Sbjct: 504 EAMKIFAEMIENRCAPDVLAMNSLI 528
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K C+ + M E G+ + S+ VI+ GR + + + ++ + +P+ T
Sbjct: 920 GDTEKVCE-LFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLIT 978
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +G ++E+ + +++ GI P++ Y L+ K+ + +A + +E+
Sbjct: 979 YNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEEL 1037
>gi|297804554|ref|XP_002870161.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
lyrata]
gi|297315997|gb|EFH46420.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
lyrata]
Length = 702
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 111/267 (41%), Gaps = 33/267 (12%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSVY 68
I M E G++ +N ++ G +EA + + +M+ CDP+ T ++++VY
Sbjct: 372 IYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVY 431
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE---------- 118
+G V E++ +++ +G P++ ++ Y K+ + DD D+
Sbjct: 432 SCSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDD 491
Query: 119 ---------MHTNRISNIHQVTGQMIKGEFDDESNWQMV-------EYVFDKLNCE---- 158
M I ++ G + K + + +M+ E VF K E
Sbjct: 492 RFCGCLLNVMTQTPSEEIGKLIGCVEKAKPQNIGQVKMLVEEQNGEEGVFKKETSELIDS 551
Query: 159 -GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEG 217
G + + N L++ L ERA +L + ++ L + WS+ + + G
Sbjct: 552 IGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLG 611
Query: 218 GAYTAISVWLNKMYEMFM-MGEDLPQL 243
A TA+ VW+N + E + GE+ P L
Sbjct: 612 AALTALHVWINDLSEAALESGEEFPPL 638
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 86/202 (42%), Gaps = 1/202 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ + + M E GV ++ +F +I RQ G + A++ + +M C+P+ TL A+
Sbjct: 192 EKSEKLFDEMLERGVKPDNATFTTIISCARQSGVPKRAVEWFEKMSSFGCEPDNVTLAAM 251
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ Y AG V+ + + ++ + + L+ +Y S +D + +EM +
Sbjct: 252 IDAYGRAGNVEMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGV 311
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +++ + WQ + + L G+ Y AL+ A + A
Sbjct: 312 KPNLVIYNRLLDSMGRAKRPWQ-AKIIHKDLISNGFTPNWSTYAALIRAYGRARYGDDAL 370
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ E ++GL + +N L+
Sbjct: 371 VIYREMKEKGLSLTVILYNTLL 392
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 70/176 (39%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+F+ +I + G ++ + Y EM+ + PN +L A ++K +++
Sbjct: 282 TFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLLDSMGRAKRPWQAKIIHKDL 341
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S+G P+ Y L+ Y ++ DDA + EM +S + ++ D
Sbjct: 342 ISNGFTPNWSTYAALIRAYGRARYGDDALVIYREMKEKGLSLTVILYNTLLSMCADIGYV 401
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
+ E D NCE +++L+ C G A L + + G P LF
Sbjct: 402 DEAFEIFQDMKNCETCDPDSWTFSSLITVYSCSGRVSEAEAALLQMREAGFEPTLF 457
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y C I M GV N +N ++++ + R +A + ++ PN T
Sbjct: 293 SGNYDGCLNIYEEMKALGVKPNLVIYNRLLDSMGRAKRPWQAKIIHKDLISNGFTPNWST 352
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ Y A D++ ++E+K G+ +V+ Y LL++ A D+A+ + +M
Sbjct: 353 YAALIRAYGRARYGDDALVIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDM 411
>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like, partial [Cucumis sativus]
Length = 564
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
AI + + G+ + +N +I AF G+ + A+ EM+K R P RT ++ +
Sbjct: 144 AIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGF 203
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G + ++ + F ++ SG +P+V Y L+ + + + A +LDEM +S
Sbjct: 204 ARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNE 263
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G + Y F KL EG L + Y ALL+A G + A V
Sbjct: 264 HTYTTIMHGYASLGDTGKAFAY-FTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTK 322
Query: 189 EATKRGLFPELFRHNKLV 206
E + + + F +N L+
Sbjct: 323 EMSAQNIPRNTFIYNILI 340
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + M SG ++NA+I + + E+A + EM PNE T
Sbjct: 207 GEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTY 266
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G ++ F +++ G+ V Y LL KS R A + EM
Sbjct: 267 TTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSA 326
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I + +I G W+ + + ++ EG + Y + + A G +
Sbjct: 327 QNIPRNTFIYNILIDGWARRGDVWEAAD-LMQQMKREGVQPDIHTYTSFINACSKAGDMQ 385
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA + ++E G+ P + + L+
Sbjct: 386 RATKTIEEMKSVGVKPNVKTYTTLI 410
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 1/182 (0%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E + N+ + +I A+ Q ++A EME+ D ++ Y G D
Sbjct: 11 EKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDED 70
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
+ F+ K G+ PSV+ Y L+ +YAK + A + EM I + + +I
Sbjct: 71 KCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLI 130
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
G F +W +F+ L +G + YN ++ A +G +RA + E K+
Sbjct: 131 NG-FLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRH 189
Query: 196 FP 197
P
Sbjct: 190 KP 191
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 58/118 (49%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RN+ +N +I+ + + G EA +M++ P+ T
Sbjct: 312 GRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTY 371
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ ++ AG + + + +E+KS G+ P+V Y L+ +A+++ + A +EM
Sbjct: 372 TSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEM 429
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M GV + ++ + I A + G + A K EM+ V PN +T ++
Sbjct: 351 EAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLI 410
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ + A L +++ F+E+K SG+ P Y C++ ++ +++
Sbjct: 411 NGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSLLSRAT 453
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 98/225 (43%), Gaps = 36/225 (16%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+A++ M E G+ D ++ +++ + G ++ + + ++ +P+ T ++++
Sbjct: 38 EALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINL 97
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI--- 124
Y G V ++ E +E++ +GI ++ Y ML+ + K W +A+ + +++ + I
Sbjct: 98 YAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPD 157
Query: 125 ----SNI------------------------HQVTGQ----MIKGEFDDESNWQMVEYVF 152
+NI H+ T + +I G F + + VF
Sbjct: 158 VVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHG-FARKGEMKKALDVF 216
Query: 153 DKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
D + G + YNAL+ L E+A ++LDE T G+ P
Sbjct: 217 DMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSP 261
>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 11/176 (6%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y E + L RM E GV ++ S+ +I+ + + G EEA + +VEM PN T
Sbjct: 431 YDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNV 490
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---- 119
++ YC G V E+++ + +K++G+ P Y L+ ++ D+A L EM
Sbjct: 491 MIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKG 550
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
N ++ ++G G+ D+ ++D++ +GY + + Y AL+ ++
Sbjct: 551 LDQNSVTYTVMISGLSKAGKSDEAFG------LYDEIKRKGYTIDNKVYTALIGSM 600
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 65/118 (55%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + MS V N+ ++N +I A+ + G+ +EA K + M+ DP+ T
Sbjct: 464 GNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTY 523
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ C A VDE+ F E+ G+ + + Y ++++ +K+ + D+A+GL DE+
Sbjct: 524 TSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEI 581
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 11/213 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+++E + M + G++ + S + A ++ R + ++ + M +L
Sbjct: 149 GMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEFFRRMVDSGVKITVYSL 208
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ C G V++SK+ +E GI P Y ++ Y K + +L M
Sbjct: 209 TIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILKVMKK 268
Query: 122 -----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N+++ + + G+ +D VE +FD++ G + Y +L+
Sbjct: 269 DGVVYNKVTYTLLIELSVKNGKMND------VEKLFDEMRERGIESDIHVYTSLISWNCR 322
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
G +RA + DE T++GL P + L+ V
Sbjct: 323 KGNIKRAFLLFDELTEKGLLPSSHTYGALIDGV 355
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/238 (18%), Positives = 95/238 (39%), Gaps = 12/238 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + ++ S G+ + ++N +I A+ + F K M+K N+ T
Sbjct: 219 GEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTY 278
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + G +++ ++ F E++ GI + Y L++ + A+ L DE+
Sbjct: 279 TLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTE 338
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ G +I G E + +++ +G + +N L+ G+ +
Sbjct: 339 KGLLPSSHTYGALIDG-VCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMID 397
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAISVWLN 228
A+ + D K+G ++F N + + + RM EGG + + N
Sbjct: 398 EASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTN 455
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ +++ M GV FN +I + + G +EA Y MEK + T + S
Sbjct: 365 EILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASC 424
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ DE+K+ + G+ S + Y L+ VY K ++A L EM + +
Sbjct: 425 FNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEV 481
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/205 (17%), Positives = 85/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K + ++E G+ +S ++ A+I+ + G A EM+ + +
Sbjct: 324 GNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVF 383
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC G++DE+ + ++ G V + + + + R+D+A L M
Sbjct: 384 NTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMME 443
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + V+ + + E N + + +F +++ + YN ++ A G +
Sbjct: 444 GGV-RLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVK 502
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++ G+ P+ + + L+
Sbjct: 503 EARKLWANMKANGMDPDSYTYTSLI 527
>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 36/198 (18%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L M GV N S+ I Q GR EEA + +ME+ C P+ T ++ +
Sbjct: 227 GLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQIL 286
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C AG + ++K+ F ++K+S P + Y LL D G
Sbjct: 287 CDAGRLADAKDVFWKMKASDQKPDRVTYITLL----------DKCG-------------- 322
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
D + + V +++ L +GY + Y A ++AL +G + A V D
Sbjct: 323 ------------DSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFD 370
Query: 189 EATKRGLFPELFRHNKLV 206
E ++G+ P+ + +N L+
Sbjct: 371 EMKQKGIIPQQYSYNSLI 388
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 97/212 (45%), Gaps = 2/212 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ + GV+ + S+NA+I + A + + EM+++ CDP+E T +L
Sbjct: 753 LVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMG 812
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ +++ + +E+ + G + + Y +++ KS D+A L ++ + S
Sbjct: 813 KSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPC 872
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
G ++ G D N + E +FD++ G YN LL G E+ + +
Sbjct: 873 TYGPLLDGLLKD-GNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFES 931
Query: 190 ATKRGLFPELFRHNKLVWSVDVH-RMWEGGAY 220
++G+ P++ + ++ ++ R+ +G +Y
Sbjct: 932 MVEQGMNPDIKSYTVVIDTLCADGRLNDGLSY 963
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
++++ G+ + ++N +I + GR EEA+ Y +MEK PN T +++ AG
Sbjct: 966 QLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAG 1025
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ + ++E+ + G P+V Y L+ Y+ S ++A+ M
Sbjct: 1026 KAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRM 1072
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 83/196 (42%), Gaps = 1/196 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + + NAV+ + GR A + + E++ + P+ T ++ A
Sbjct: 442 MKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASN 501
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
DE+ + F E+ + P V+ L+ + K+ R ++A+ + E+ +
Sbjct: 502 ADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNT 561
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ G E + V + + +N + + YN +L+ L G A +L T
Sbjct: 562 LLAG-LGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMN 620
Query: 194 GLFPELFRHNKLVWSV 209
G P+L +N +++ +
Sbjct: 621 GCMPDLSSYNTVMYGL 636
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 9/209 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M + G+ S+N++I F + RF A++ + M PN T
Sbjct: 360 GRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTH 419
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + +G ++ ++++ +KS GI+P V+ +L AK+ R A + E+
Sbjct: 420 VLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKA 479
Query: 122 NRISNIHQVTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
IS + MI K DE+ E + ++ C L M N+L++ L+
Sbjct: 480 MGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENR--CAPDVLAM---NSLIDMLYKA 534
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G A ++ E + L P +N L+
Sbjct: 535 GRGNEAWKIFYELKEMNLEPTDCTYNTLL 563
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 13/205 (6%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + S M G + +++ +++A + R E+ +K EM T ++S
Sbjct: 786 EELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISG 845
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM------HT 121
+ ++DE+ + ++ S G P+ Y LL K +DA L DEM
Sbjct: 846 LVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPN 905
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I NI + G I G D E ++ E + + +G ++ Y +++ L G
Sbjct: 906 CAIYNI-LLNGYRIAG--DTEKVCELFESMVE----QGMNPDIKSYTVVIDTLCADGRLN 958
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+ T GL P+L +N L+
Sbjct: 959 DGLSYFKQLTDMGLEPDLITYNLLI 983
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 58/113 (51%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + G++ ++ ++ +I+ + +EA+K + EM + RC P+ + +++ +
Sbjct: 473 VFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLY 532
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
AG +E+ + F E+K + P+ Y LLA + + + LL+ M++N
Sbjct: 533 KAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSN 585
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 79/205 (38%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + I + + G N S+ A ++A Q GR +EA+ + EM++ P + +
Sbjct: 325 GDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSY 384
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++S + A + + E F + G P+ + + + + KS A + M +
Sbjct: 385 NSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKS 444
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I V G + M + VF +L G Y +++ +
Sbjct: 445 KGIVP-DVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNAD 503
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++ E + P++ N L+
Sbjct: 504 EAMKIFAEMIENRCAPDVLAMNSLI 528
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K C+ + M E G+ + S+ VI+ GR + + + ++ + +P+ T
Sbjct: 920 GDTEKVCE-LFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLIT 978
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +G ++E+ + +++ GI P++ Y L+ K+ + +A + +E+
Sbjct: 979 YNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEEL 1037
>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 817
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + IL + +E+G+ + +N + + + G +AI ME PN T
Sbjct: 365 GKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITF 424
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C +D+++E +++ G+ PSV Y L+ Y K +D + +L++M
Sbjct: 425 NSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEE 484
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ G +I D + E V + C G + YN L++ +G +
Sbjct: 485 IGVKPNVVSYGSLINCLCKDGKILE-AEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVK 543
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R DE + + P L +N L+
Sbjct: 544 DALRFFDEMMRSEISPTLVTYNVLI 568
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 2/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +L M GV N+ +N +I+ G+ ++A++ + EM + P T ++
Sbjct: 509 EAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLI 568
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G + E+++ +I SSG P V+ Y L++ YA + GL + M I
Sbjct: 569 DGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIK 628
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +I G + ++VE +++++ YNA++ +G ++A
Sbjct: 629 PTVRTYHPLISG--CSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYS 686
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ +G+ P+ +N L+
Sbjct: 687 LHQGMLDQGIHPDKMTYNSLI 707
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 5/184 (2%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I+ + + G + A K M++ PN T ++LS C + E++ +E+
Sbjct: 248 TYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEM 307
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD--EMHTNRISNIHQVTGQMIKGEFDDE 142
+ +G +P Y +L R DD G ++ E T + I+ TG ++ +
Sbjct: 308 EVNGFMPDGYTYSILFDGLL---RCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQ 364
Query: 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
+ E + K G YN + +G +A ++ GL P
Sbjct: 365 GKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITF 424
Query: 203 NKLV 206
N L+
Sbjct: 425 NSLI 428
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 3/197 (1%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L M + GV N +N +I + R +A K + EM + + T ++ YC
Sbjct: 199 LDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCK 258
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G +D + + + +K + P+++ + LL+ K + +A LL EM N
Sbjct: 259 VGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYT 318
Query: 131 TGQMIKGEFD-DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ G D+ N M ++++ +G + + LL L G E+A +L +
Sbjct: 319 YSILFDGLLRCDDGNGAM--ELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKK 376
Query: 190 ATKRGLFPELFRHNKLV 206
T+ GL + +N V
Sbjct: 377 FTENGLVADEVIYNTFV 393
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + L++++ SG + + ++N++I + G + + Y M+ + P RT
Sbjct: 575 GKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTY 634
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY----GLLD 117
++S C ++ ++ + E+ +LP + Y ++ YA+ AY G+LD
Sbjct: 635 HPLIS-GCSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLD 693
Query: 118 E-MHTNRISNIHQVTGQMIKGEFDD 141
+ +H ++++ + G +G+ +
Sbjct: 694 QGIHPDKMTYNSLILGHFREGKLSN 718
>gi|410110145|gb|AFV61152.1| pentatricopeptide repeat-containing protein 123, partial [Nashia
inaguensis]
Length = 433
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 97 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 156
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI PSV+ Y LL VY + + +A L M
Sbjct: 157 IMIDVYGQLGMAKEADKLFWGMRKMGIEPSVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 216
Query: 123 RI 124
I
Sbjct: 217 NI 218
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 61/118 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE + + +AI + +++ P+
Sbjct: 26 GLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKLCDYSKAISIFSRLKRSGFXPDLVAY 85
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 86 NAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 143
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ + S+N ++ + F EAI + M++ + N T
Sbjct: 166 GMAKEADKLFWGMRKMGIEPSVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 225
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 226 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 285
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 286 SGV-EIDQILFQ 296
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 202 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 261
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 262 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 321
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 322 DNIPRDTAIHILAG---AGRIEEAT------YVFRQAIDAGXVKDITVFERMIHLLSKYK 372
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 373 KYSNVVEVFDKXRGLGYFPD 392
>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 2/207 (0%)
Query: 1 GGLYKECQAILSRM-SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
G KE + M S+ + ++ ++N +I F G+ + A K M+ C PN
Sbjct: 239 SGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVF 298
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++S +C G ++E+ + F+E+K G+ + Y +L+ + + R D+A LL+EM
Sbjct: 299 NYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALLEEM 358
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +++G F E + + ++L+ EG L Y +L +L G
Sbjct: 359 KETKCKADIVTVNVLLRG-FCGEGRTEEALGMLNRLSSEGIYLNKASYRIVLNSLCQKGD 417
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
++A +L RG P N+L+
Sbjct: 418 LDKALELLGLTLSRGFVPHHATSNELL 444
>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 719
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 69/138 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL K C I ++S G++ ++ +NAVI+A + + A + +M C P+ T
Sbjct: 196 GLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTY 255
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C +G+VDE+ ++++ G P+V Y +L+ + + + D+A+ +L+ M
Sbjct: 256 NILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKA 315
Query: 122 NRISNIHQVTGQMIKGEF 139
++S I G F
Sbjct: 316 RKVSPSEATIRSFIHGVF 333
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 58/103 (56%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M G+ + SFNA+I++F + G+ E+A K + M + P+ T A + V+C
Sbjct: 589 LLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFC 648
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+G +E+KE F ++++G +P ++L K ++++ A
Sbjct: 649 QSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAA 691
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 84/198 (42%), Gaps = 1/198 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E ++M + G+ N S+N VI+ F + ++A + EM+ PN T
Sbjct: 440 AGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVT 499
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ YC G + +S++ + G P + + ++ ++ + +DA G EM
Sbjct: 500 FNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMV 559
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+S + VT ++ + + K+ +G + +NAL+++ +G
Sbjct: 560 MWGLSP-NAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKV 618
Query: 181 ERAARVLDEATKRGLFPE 198
E A ++ GL P+
Sbjct: 619 EDAKKLFSSMLSLGLIPD 636
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 85/205 (41%), Gaps = 13/205 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL R E G+ ++ A+I+A G+ E + +M K N + V+ +C
Sbjct: 414 ILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFC 473
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
++D++ F+E++ GI P+++ + L+ Y K + LL + +
Sbjct: 474 KTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIF 533
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCE------GYGLGMRFYNALLEALWCLGLRERA 183
+I G + + D L C G YN L+ +L +G R+
Sbjct: 534 TFSSIIDG-------LCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRS 586
Query: 184 ARVLDEATKRGLFPELFRHNKLVWS 208
++L + G+ P++F N L+ S
Sbjct: 587 MKLLRKMQTDGINPDVFSFNALIQS 611
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + + S M G+ ++ ++ A I+ F Q GRF EA + ++ ME C P+ T
Sbjct: 616 GKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTC 675
Query: 62 EAVL 65
+L
Sbjct: 676 NIIL 679
>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
salt-inducible-like protein from Arabidopsis thaliana
BAC gb|AL021637 [Arabidopsis thaliana]
gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 780
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 3/209 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +LS M G++ ++ +NAVI+A G EE +EM + P+ T
Sbjct: 351 AGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACT 410
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C GLV E++E F EI+ SG PSV + L+ KS +A LL +M
Sbjct: 411 HTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKME 470
Query: 121 TNRISNIHQVTGQMIKGEFDD--ESNWQMVEYV-FDKLNCEGYGLGMRFYNALLEALWCL 177
R +++ FD ES + Y G + YN L+
Sbjct: 471 VGRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRA 530
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A ++L+ +GL P+ +N L+
Sbjct: 531 GDIDGALKLLNVLQLKGLSPDSVTYNTLI 559
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 1/210 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ + M + + N +F +++ + GR +A K + +M PN T ++S
Sbjct: 184 AVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGL 243
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G D++++ F E+++SG P + + LL + K R +A+ LL +
Sbjct: 244 CQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGL 303
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ +I G F Q E + L + + Y L++ L G E A ++L
Sbjct: 304 RGYSSLIDGLFRARRYTQAFELYANMLK-KNIKPDIILYTILIQGLSKAGKIEDALKLLS 362
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+G+ P+ + +N ++ ++ + E G
Sbjct: 363 SMPSKGISPDTYCYNAVIKALCGRGLLEEG 392
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 6/213 (2%)
Query: 2 GLYK-----ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GLYK + Q + M+ G++ N ++ +I Q G ++A K + EM+ P
Sbjct: 207 GLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYP 266
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+ A+L +C G + E+ E + + G + + Y L+ ++ R+ A+ L
Sbjct: 267 DSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELY 326
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
M I + +I+G + + + +G YNA+++AL
Sbjct: 327 ANMLKKNIKPDIILYTILIQG-LSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCG 385
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
GL E + E ++ FP+ H L+ S+
Sbjct: 386 RGLLEEGRSLQLEMSETESFPDACTHTILICSM 418
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 104/242 (42%), Gaps = 57/242 (23%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV--- 67
L + GV+ +S F +I A+ + G E+A++++ M++ C P+ T +L V
Sbjct: 115 LEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMR 174
Query: 68 ------------------------YCFAGLVD---------ESKEQFQEIKSSGILPSVM 94
Y F L+D ++++ F ++ GI P+ +
Sbjct: 175 EEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRV 234
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHT----------NRISNIHQVTGQMIKGEFDDESN 144
Y +L++ + DDA L EM T N + + G+M++
Sbjct: 235 TYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEA------- 287
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
++++ +F+K +G+ LG+R Y++L++ L+ +A + K+ + P++ +
Sbjct: 288 FELLR-LFEK---DGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTI 343
Query: 205 LV 206
L+
Sbjct: 344 LI 345
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAK---SNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
+ +E+KS G+ C+C+L++ YAK + + +++G + E + V +++
Sbjct: 113 QTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVM 172
Query: 136 KGEFDDESNWQMVEYVFD---KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
E E + + V++ K NC + + L++ L+ G A ++ D+ T
Sbjct: 173 MRE---EVFFMLAFAVYNEMLKCNCSP---NLYTFGILMDGLYKKGRTSDAQKMFDDMTG 226
Query: 193 RGLFPELFRHNKLVWSVDVHRMWEGGA 219
RG+ P N++ +++ + + + G+
Sbjct: 227 RGISP-----NRVTYTILISGLCQRGS 248
>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 3/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + E G + N + +I+ + G E+A + EM K NE T ++
Sbjct: 185 LLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLF 244
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIH 128
G+ + E +++++ G+ P++ Y ++ + K R DA+ L DEM +S NI
Sbjct: 245 KNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNI- 303
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT + G E V D++ +G + YN L++ +G +A +
Sbjct: 304 -VTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCR 362
Query: 189 EATKRGLFPELFRHNKLV 206
+ RGL P L +N LV
Sbjct: 363 DLKSRGLSPSLVTYNILV 380
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 5/225 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + M E GV+ N ++N +I + + EA K +M+ +PN T
Sbjct: 282 GRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITY 341
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G + ++ +++KS G+ PS++ Y +L++ + K A ++ EM
Sbjct: 342 NTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEE 401
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I ++T ++ F N + + + G + Y+ L+ G
Sbjct: 402 RGIKP-SKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMN 460
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
A+R+ + L P +N +V EG +Y A+ ++
Sbjct: 461 EASRLFKLMVAKKLEPNKVIYNTMVLGY----CKEGSSYRALRLF 501
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + + M + G+ N ++ +I + G ++ + Y +M++ PN T
Sbjct: 212 GEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTY 271
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V++ +C G ++ + F E++ G+ +++ Y L+ + + ++A ++D+M +
Sbjct: 272 NCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKS 331
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I N + +T + F + L G + YN L+ G
Sbjct: 332 DGI-NPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTS 390
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +V+ E +RG+ P + L+
Sbjct: 391 GAGKVVKEMEERGIKPSKITYTILI 415
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 53/108 (49%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
S M E G+ + +++ +I F G+ EA + + M + +PN+ ++ YC
Sbjct: 432 SPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKE 491
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G + F+E++ + P+V Y ++ V K + +A GL+++M
Sbjct: 492 GSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKM 539
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 52/110 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M E G+ + ++ +I+ F + E+AI+ ME++ P+ T ++ +C
Sbjct: 395 VVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFC 454
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G ++E+ F+ + + + P+ + Y ++ Y K A L EM
Sbjct: 455 IKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREM 504
>gi|147778635|emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera]
Length = 466
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 95/211 (45%), Gaps = 13/211 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G++K+ I+ + E GV+ + +N++I+ F + G EA++ + +M++ P+ T
Sbjct: 196 GMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTW 255
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C AG V ++ E F +++ G+ P + +++ + +WD ++
Sbjct: 256 NSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKWD----VIKRNFE 311
Query: 122 NRISNIHQVTGQM------IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
N HQ +G + I G++ +Q E L EG + L A
Sbjct: 312 NMKCRGHQRSGAIYAILVDIYGQY---GRFQGPEECISALKSEGIQPSASMFCVLANAYA 368
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
GL E+ +VL G+ P L N L+
Sbjct: 369 QQGLCEQTVKVLQLMETEGIEPNLIMLNMLI 399
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L++M G + + S+ VIEA GR EA + EM + + R +L
Sbjct: 64 LLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLRSCL 123
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL++ + + E+ + GI + Y L+ Y ++ R +D + ++ EM +
Sbjct: 124 RKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSF 183
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V ++I G + D W+ + ++ G L R YN++++ G A V ++
Sbjct: 184 VYSKVI-GVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEK 242
Query: 190 ATKRGLFPELFRHNKLV 206
+ G+ P++ N L+
Sbjct: 243 MQEEGVKPDIMTWNSLI 259
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 53/119 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + +L+ M G+ RN ++ A+++ + + GR + EM + P+
Sbjct: 126 GLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVY 185
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ VY G+ ++ E +EI+ G+ Y ++ + K +A + ++M
Sbjct: 186 SKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQ 244
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 39/197 (19%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L ++ G + +++ VI+ + GR +A+ + EM C P T +++ YC
Sbjct: 242 LLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYC 298
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +DE+ ++ P V+ Y L++ + K R DDAY L +M N++S
Sbjct: 299 RAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSP--- 355
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ + +L++ L G E A +L+E
Sbjct: 356 ---------------------------------DVVTFTSLVDGLCGEGRMEDALELLEE 382
Query: 190 ATKRGLFPELFRHNKLV 206
T+RG P ++ +N +V
Sbjct: 383 ITRRGCPPTIYTYNCVV 399
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 13/207 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M + A + ++ ++ AF + GR ++A + + +M + P+ T +++ C
Sbjct: 309 LLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLC 368
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRI 124
G ++++ E +EI G P++ Y ++ Y KSN+ A L+ + + N +
Sbjct: 369 GEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTV 428
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG--YGLGMRFYNALLEALWCLGLRER 182
+ V G G D Q ++Y D+LN EG + Y +L+AL G +
Sbjct: 429 TYNILVAGCCRAGRTD-----QALQY-LDQLNSEGGPCPTSVAMYAIILDALCRDGRTDD 482
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSV 209
A + +E +RG P +V+++
Sbjct: 483 AVQFYEEMIQRGYVPAAATFATVVFAL 509
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 80/179 (44%), Gaps = 1/179 (0%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E A + ++N++I + + G +EAI+ +M C P+ T ++S +C G +D
Sbjct: 280 EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLD 339
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
++ E FQ++ ++ + P V+ + L+ R +DA LL+E+ T R T +
Sbjct: 340 DAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI-TRRGCPPTIYTYNCV 398
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
+ + + E + G+ YN L+ G ++A + LD+ G
Sbjct: 399 VDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEG 457
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 77/184 (41%), Gaps = 3/184 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ ++ + GR +A++ EM R P+ TL V+ C VD+++E +E+
Sbjct: 151 TYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEM 210
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G+ + + Y L+ K R D+A LL T R VT +
Sbjct: 211 LHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGR 270
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ +F++++C + YN+L+ G + A R+L + P++ +
Sbjct: 271 LRDAVDIFEEMSCAPTAI---TYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTT 327
Query: 205 LVWS 208
L+ +
Sbjct: 328 LMSA 331
>gi|255661168|gb|ACU25753.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 352
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTTSYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 2/207 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E M G ++ N +I + GR ++A+K + EM +RC P+ T
Sbjct: 313 AGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVT 372
Query: 61 LEAVL-SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +++ E F+ +K SGI PS Y +L+ + K+NR + A LL+EM
Sbjct: 373 YNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEM 432
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+I + + +F +L R Y +++ L G
Sbjct: 433 DEKGFPPCPAAYCSLIDA-LGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGR 491
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A + DE K G P+++ +N L+
Sbjct: 492 LDDAINMFDEMNKLGCAPDVYAYNALM 518
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 16/210 (7%)
Query: 25 SFNAVIEA-FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE 83
++N +I+A F R E + M++ P+ T ++ +C ++++ +E
Sbjct: 372 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 431
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK-----GE 138
+ G P YC L+ K+ R+D A L E+ N S+ +V MIK G
Sbjct: 432 MDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGR 491
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
DD N +FD++N G + YNAL+ L G+ + A + + G P+
Sbjct: 492 LDDAIN------MFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPD 545
Query: 199 LFRHNKLVWSVDVHRMWEGGAYTAISVWLN 228
+ +N ++ + GG + A+ + N
Sbjct: 546 INSYNIILNGL----AKTGGPHRAMEMLSN 571
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M E+G+ + + +I F + A+ + EM C P+ T ++
Sbjct: 252 LLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLG 311
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +DE+ F E++ G P + ++ K+ R DDA L EM T R
Sbjct: 312 KAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVV 371
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+IK F+ +S V F+++ G Y+ L++ E+A +L+E
Sbjct: 372 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 431
Query: 190 ATKRGLFP 197
++G P
Sbjct: 432 MDEKGFPP 439
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 15/221 (6%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + RM ESG++ +S +++ +I+ F + R E+A+ EM++ P +++
Sbjct: 389 EVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLI 448
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
A D + E FQE+K + S Y +++ K+ R DDA + DEM N++
Sbjct: 449 DALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM--NKLG 506
Query: 126 NIHQV-------TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
V +G G D+ + ++ G + YN +L L G
Sbjct: 507 CAPDVYAYNALMSGLARTGMLDEALS------TMRRMQEHGCIPDINSYNIILNGLAKTG 560
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
RA +L + + P++ +N ++ ++ M+E A
Sbjct: 561 GPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAA 601
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 10/227 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNERTLEAVLSV 67
AI ++ + ++N++I G++ + + Y EM + C P+ T A++S
Sbjct: 180 AIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISA 239
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISN 126
+C G D + + E+K +G+ P+ Y ML+ ++ K + A L +EM H +
Sbjct: 240 FCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPD 299
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ T ++I+G + F ++ EG N ++ L G + A ++
Sbjct: 300 VFTYT-ELIRG-LGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKL 357
Query: 187 LDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTA-ISVWLNKMYE 232
E P + +N ++ + ++E + + + W +M E
Sbjct: 358 FQEMGTLRCIPSVVTYNTIIKA-----LFESKSRASEVPSWFERMKE 399
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 55/112 (49%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M++ G A + ++NA++ + G +EA+ M++ C P+ + +L+
Sbjct: 498 MFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLA 557
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
G + E +K S + P V+ Y +L + + +++A L++EM+T
Sbjct: 558 KTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNT 609
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/200 (18%), Positives = 79/200 (39%), Gaps = 36/200 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEA-----------------------------------FR 34
+L M E G ++ ++I+A
Sbjct: 428 LLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLG 487
Query: 35 QGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM 94
+ GR ++AI + EM K+ C P+ A++S G++DE+ + ++ G +P +
Sbjct: 488 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDIN 547
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
Y ++L AK+ A +L M + + V+ + G ++ + ++
Sbjct: 548 SYNIILNGLAKTGGPHRAMEMLSNMKQSTVRP-DVVSYNTVLGALSHAGMFEEAAKLMEE 606
Query: 155 LNCEGYGLGMRFYNALLEAL 174
+N G+ + Y+++LEA+
Sbjct: 607 MNTLGFEYDLITYSSILEAI 626
>gi|255661166|gb|ACU25752.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 426
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 99/229 (43%), Gaps = 34/229 (14%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI-------SNIHQVTGQMIKGEFDDE---------------------SNWQMV------ 148
I +++ + G+ ++ E + S W V
Sbjct: 214 NIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRA 273
Query: 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+F KL G + Y ++ A +GL A R+L E + P
Sbjct: 274 AMLFQKLRSSGVDIDQVLYQTMIVAYERVGLVAHAKRLLHELKRPDNIP 322
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g11690-like [Glycine max]
Length = 556
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 63/118 (53%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + + + M E G+A ++N +I +G +F EA+K ++ KV PN T
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTY 336
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ +C G +D + F ++KSSG+ P+++ Y L+A Y+K A L+ EM
Sbjct: 337 NILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEM 394
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 89/197 (45%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ + E G++ N + +I+ + G A + +M+++ PN+ T +++ +
Sbjct: 180 LLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFF 239
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL E + ++ + SGI+P+ Y L++ Y D A+ + EM I+
Sbjct: 240 KQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVM 299
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G + + V+ V K+N G + YN L+ +G + A R+ ++
Sbjct: 300 TYNILIGGLCRGKKFGEAVKLV-HKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQ 358
Query: 190 ATKRGLFPELFRHNKLV 206
GL P L +N L+
Sbjct: 359 LKSSGLSPTLVTYNTLI 375
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K C+ + S M +SG+ + +++ +I G +EA K + + ++ PN +
Sbjct: 421 KACE-MHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTM 479
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ YC G + E+ SG++P+V +C + + + +W +A LL +M
Sbjct: 480 IHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQM 534
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 1/218 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L M + V + ++N +I + G ++E ++ EM DP+ T +L
Sbjct: 325 GVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYL 384
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G E+++ F + GI P+V Y +LL YA D LLD M N IS +
Sbjct: 385 CKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNN 444
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ ++ + ++ ++F +++ G + Y L++AL LG + A +
Sbjct: 445 YIF-NIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFN 503
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
+ G+ P N LV+ + WE +W
Sbjct: 504 QMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMW 541
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +L M +G++ N+ FN V+ A+ + +EA+ + M + P+ T
Sbjct: 423 GAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTY 482
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G VD++ +F ++ + G+ P+ + + L+ +RW+ A L EM
Sbjct: 483 GILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWD 542
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + V I +E + + + D + G + YN L+ G +
Sbjct: 543 QGVRP-NVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTD 601
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
AA++LD GL P+L ++ L+
Sbjct: 602 EAAQLLDVMVSVGLKPDLISYDTLL 626
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 6/205 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + GV N FN ++ G+ A + ME+V PN + ++ +C AG
Sbjct: 540 MWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGR 599
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
DE+ + + S G+ P ++ Y LL Y K+ R D+AY L EM ++
Sbjct: 600 TDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYST 659
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+++G F + E + + G + YN +L L + A ++ +
Sbjct: 660 ILQGLFHTRRFSEAKELYLNMIK-SGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSK 718
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGG 218
L P N + +++ + +++GG
Sbjct: 719 DLRP-----NIITFTIMIDVLFKGG 738
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 82/205 (40%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + I M G+ N + ++ + G + M PN
Sbjct: 388 GKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIF 447
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
VL Y ++DE+ F + G+ P V+ Y +L+ K R DDA ++M
Sbjct: 448 NIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMIN 507
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ ++ V ++ G W+ E +F ++ +G + F+N ++ L G
Sbjct: 508 DGVTPNSVVFNSLVYG-LCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVM 566
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R++D + G+ P + +N L+
Sbjct: 567 VAQRLIDSMERVGVRPNVISYNTLI 591
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 89/223 (39%), Gaps = 6/223 (2%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ +L M + GV + +++ +I+ + + A M P+ T ++
Sbjct: 219 EGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDG 278
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C A VD ++ Q + G+ P V+ Y ++ K+ D A G+L M +
Sbjct: 279 LCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPD 338
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
Q +I G + W+ V +++ G + Y+ LL+ L G A ++
Sbjct: 339 IQTYNCLIHG-YLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIF 397
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
++G+ P N ++ + +H GA ++ L+ M
Sbjct: 398 YCMIRKGIKP-----NVTIYGILLHGYAARGAIADLTDLLDLM 435
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M GV + +++ +++ RF EA + Y+ M K + T +L+ C
Sbjct: 645 MLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNC 704
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
VDE+ + FQ + S + P+++ + +++ V K R DA L + ++
Sbjct: 705 VDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSH 753
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 89/204 (43%), Gaps = 13/204 (6%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
++R + V + +++ + F + GR E A+ + K NE + +L+ C
Sbjct: 78 MARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCD 137
Query: 71 AGLVDESKE-QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-------TN 122
A VDE+ + + + G +P+V+ LL R ++A LL M T
Sbjct: 138 AKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTP 197
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ + + + K + D + +++++ DK G L + Y+ +++ L +R
Sbjct: 198 NVVTYNTIIDGLCKAQAVDRAEG-VLQHMIDK----GVKLDVVTYSTIIDGLCKAQAVDR 252
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A VL +G+ P++ +N ++
Sbjct: 253 AEGVLQHMIDKGVKPDVVTYNTII 276
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E + + M +SG + ++N ++ + +EA K + + PN T
Sbjct: 670 FSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTI 729
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
++ V G ++ + F I S G++P+V+ YC+++ + GLLDE
Sbjct: 730 MIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQE-------GLLDE 777
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 2/207 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E M G ++ N +I + GR ++A+K + EM +RC P+ T
Sbjct: 313 AGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVT 372
Query: 61 LEAVL-SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +++ E F+ +K SGI PS Y +L+ + K+NR + A LL+EM
Sbjct: 373 YNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEM 432
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+I + + +F +L R Y +++ L G
Sbjct: 433 DEKGFPPCPAAYCSLIDA-LGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGR 491
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A + DE K G P+++ +N L+
Sbjct: 492 LDDAINMFDEMNKLGCAPDVYAYNALM 518
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 25 SFNAVIEA-FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE 83
++N +I+A F R E + M++ P+ T ++ +C ++++ +E
Sbjct: 372 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 431
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK-----GE 138
+ G P YC L+ K+ R+D A L E+ N S+ +V MIK G
Sbjct: 432 MDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGR 491
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
DD N +FD++N G + YNAL+ L G+ + A + + G P+
Sbjct: 492 LDDAIN------MFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPD 545
Query: 199 LFRHNKLV 206
+ +N ++
Sbjct: 546 INSYNIIL 553
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 80/188 (42%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++G+ + + ++ F + A+ + EM C P+ T ++
Sbjct: 252 LLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLG 311
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +DE+ F E++ G P + ++ K+ R DDA L EM T R
Sbjct: 312 KAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVV 371
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+IK F+ +S V F+++ G Y+ L++ E+A +L+E
Sbjct: 372 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 431
Query: 190 ATKRGLFP 197
++G P
Sbjct: 432 MDEKGFPP 439
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNERTLEAVLSV 67
AI ++ + ++N++I G++E+ + Y EM + C P+ T A++S
Sbjct: 180 AIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISA 239
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+C G D + + E+K +G+ P+ Y ML+A++ K N A L +EM
Sbjct: 240 FCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEM 291
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 47/91 (51%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + E+ + +S + +I+ + GR ++AI + EM K+ C P+ A++S
Sbjct: 463 LFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLA 522
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
G++DE+ + ++ G +P + Y ++L
Sbjct: 523 RTGMLDEALSTMRRMQEHGCIPDINSYNIIL 553
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 51/111 (45%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G ++ ++I+A + R++ A + + E+++ + R ++
Sbjct: 428 LLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLG 487
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AG +D++ F E+ G P V Y L++ A++ D+A + M
Sbjct: 488 KAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQ 538
>gi|410110061|gb|AFV61110.1| pentatricopeptide repeat-containing protein 123, partial
[Acantholippia seriphioides]
Length = 416
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M SGV N+ S++ ++ + + +F EA+ + EM +V+C + T
Sbjct: 96 LFREARSLISEMKXSGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREVKCLLDLTTCN 155
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 156 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 215
Query: 123 RI 124
I
Sbjct: 216 NI 217
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 61/118 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + +++ P+
Sbjct: 25 GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 84
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K SG++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 85 NAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYVENKKFLEALSVFSEM 142
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 165 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 224
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 225 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 284
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 285 SGVE-IDQILFQ 295
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N++I + + E+A EM+ +PN T
Sbjct: 201 LFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 260
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 261 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 320
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 321 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 371
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 372 KYANVVEVFDKMRGLGYFPD 391
>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 485
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 5/192 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + ++ M + N +F A+I AF + G+F EA K Y EM + DP+ T
Sbjct: 223 GRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTY 282
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G VDE+K+ + + G P V+ Y L+ + K+ R D+ L+ EM +
Sbjct: 283 NSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREM-S 341
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R + VT I + + +F ++ G +R Y+ LL L C R
Sbjct: 342 QRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRM---GSRPNIRTYSILLYGL-CYNWRV 397
Query: 182 RAARVLDEATKR 193
A VL E+ ++
Sbjct: 398 EKALVLFESMQK 409
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 90/198 (45%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+++ +M + G + + +++I F QG R A+ +ME++RC + ++ +
Sbjct: 125 SVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGF 184
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C GLV+ + F ++ G+ + Y L+ S R DA L+ +M I +
Sbjct: 185 CKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVP-N 243
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+T + F E + + ++++ + YN+++ L G + A ++LD
Sbjct: 244 VITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILD 303
Query: 189 EATKRGLFPELFRHNKLV 206
+G FP++ +N L+
Sbjct: 304 LMVTKGCFPDVVTYNTLI 321
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 32/147 (21%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGR--------------------------- 38
E ++ MS+ G+ ++ +FN +I+ + Q GR
Sbjct: 332 EGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRMGSRPNIRTYSILLYGL 391
Query: 39 -----FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV 93
E+A+ + M+K + + T V+ C G V+++ + F + G+ P V
Sbjct: 392 CYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDV 451
Query: 94 MCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ Y +++ + + WD A L +M
Sbjct: 452 VTYTTMISGFCRKRLWDKADFLYRKMQ 478
>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Brachypodium distachyon]
Length = 801
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + + M E G+ + + ++ + GR E+A + M++ C P+E T
Sbjct: 228 GMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTY 287
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
LS C AG VDE+ +F+ ++ G ++ Y L+ ++ R+D+ EM
Sbjct: 288 TVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLG 347
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
IS + +I+ F + + + D++ +G+ YN LL+AL+ +G +
Sbjct: 348 KSISPDITLYTILIR-RFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNID 406
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA ++ E + + + HN ++
Sbjct: 407 RAQSLMSEMLQNNVVLDSTTHNIMI 431
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 12/180 (6%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++ +I+ Q GRF+E + Y EM P+ ++ + AG ++ E+K
Sbjct: 322 YSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMK 381
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI---SNIHQ--VTGQMIKGEFD 140
G +P CY LL D A L+ EM N + S H + G KG D
Sbjct: 382 DKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLID 441
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
VFD++ G + YNAL++ L+ G+ E AR+L + G P LF
Sbjct: 442 KAMQ------VFDEMGEHGCHPTVMTYNALIDGLYRAGMLEE-ARMLFHKMEMGNNPSLF 494
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 16/237 (6%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++E SRM + + +NAV + G A+ Y M C PN T
Sbjct: 157 AGRHQEAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLALALYNRMVSSGCLPNSTT 216
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G+ ++ + F E+ GI+P V Y +LL+ R +DA LL M
Sbjct: 217 YIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMK 276
Query: 121 TN-----RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
N ++ ++G G D+ + F+ L G+ LG+ Y+ L++ L+
Sbjct: 277 ENGCPPDEVTYTVFLSGLCKAGRVDEAFHR------FELLQDGGFTLGLIGYSCLIDGLF 330
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
G + E + + P++ ++++ + R E G + L++M +
Sbjct: 331 QAGRFDEGLSYYTEMLGKSISPDI-----TLYTILIRRFAEAGRTKDAFLLLDEMKD 382
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 13/149 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME---------KV 52
GL + + M E G ++NA+I+ + G EEA + +ME ++
Sbjct: 438 GLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKMEMGNNPSLFLRL 497
Query: 53 RCDPNE----RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108
N+ +L ++ C +G V ++ + + I SG++P V+ Y L+ K+
Sbjct: 498 TLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKN 557
Query: 109 WDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
D A L E+ IS G +I G
Sbjct: 558 LDGALRLFKELQLKGISPDEITYGTLIDG 586
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 54/286 (18%), Positives = 109/286 (38%), Gaps = 51/286 (17%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K+ +L M + G ++ +N +++A G + A EM + + T
Sbjct: 367 AGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTT 426
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C GL+D++ + F E+ G P+VM Y L+ ++ ++A L +M
Sbjct: 427 HNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKME 486
Query: 121 --------------TNRISNIHQV---------TGQMIK------GEFDDESNWQMVEY- 150
N++ + + +GQ++K G + +V Y
Sbjct: 487 MGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYN 546
Query: 151 -----------------VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+F +L +G Y L++ LW A + +
Sbjct: 547 TLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILRS 606
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239
G FP L +N ++ S + RM + AI++WL+ + + + + +
Sbjct: 607 GGFPSLPIYNTMMRS--LCRMKK--LSQAINLWLDYLPKKYNLSPE 648
>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 827
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 90/205 (43%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + M++ G+ N N +I A + G +EA+ + EM+ PN T
Sbjct: 386 GRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTY 445
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S +C G + ++ E+F ++ S GI P+ Y L+ + A + EM +
Sbjct: 446 STLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMS 505
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + V I E + VF+ + G + +N+L++ +G E
Sbjct: 506 KGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKME 565
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A VLD G+ P++ +N LV
Sbjct: 566 KAFGVLDAMVSVGIEPDVVTNNTLV 590
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV--RCDPNERTLEAVLSV 67
+L RMSE ++ S+N VI++ R +EA+ M K RC P+ + V+
Sbjct: 182 LLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHG 241
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ G V ++ F E+ G++P V Y ++ K+ D A +L +M ++
Sbjct: 242 FFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQM-VDKGVEP 300
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
VT I + +W+ +F K+ +G +++ + +L G + A +
Sbjct: 301 DGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIF 360
Query: 188 DEATKRGLFPELFRHNKLV 206
T +G P++ ++ L+
Sbjct: 361 QYMTTKGHMPDIVSYSILL 379
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 82/182 (45%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+FN++I+ + G+ E+A M V +P+ T ++S YC +G +D+ F+E+
Sbjct: 550 TFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREM 609
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ P+ + Y ++L ++ R A + EM + + ++KG ++
Sbjct: 610 LHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLT 669
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + +F KL + N ++ AL+ + RE A + + GL P + +
Sbjct: 670 DEAIT-LFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGV 728
Query: 205 LV 206
++
Sbjct: 729 MI 730
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 50/253 (19%), Positives = 97/253 (38%), Gaps = 41/253 (16%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M + GV + ++NA+I + G ++E+ K + +M P+ T + +S C
Sbjct: 289 VLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLC 348
Query: 70 FAGLVDESKEQFQEIKSSGILPSVM---------------------------------CY 96
G +++E FQ + + G +P ++ C+
Sbjct: 349 KHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCH 408
Query: 97 CM--LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
C+ L++ +AK D+A + EM + + VT + F F +
Sbjct: 409 CINILISAHAKRGMMDEAMLVFTEMQGQGVRP-NVVTYSTLISAFCRMGRLADAMEKFSQ 467
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214
+ G Y++L+ G +A + E +G L R N + +S +H +
Sbjct: 468 MISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKG----LHRPNIVFFSSIIHSL 523
Query: 215 W-EGGAYTAISVW 226
EG A V+
Sbjct: 524 CIEGRVMDAQDVF 536
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 2/165 (1%)
Query: 11 LSRMSESGVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+S M G+ R N F+++I + GR +A + + + P T +++ YC
Sbjct: 500 ISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYC 559
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++++ + S GI P V+ L++ Y KS + DD L EM ++
Sbjct: 560 LVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPT-T 618
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
VT ++ + +F ++ G + + Y LL+ L
Sbjct: 619 VTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGL 663
>gi|326507498|dbj|BAK03142.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1043
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 91/193 (47%), Gaps = 11/193 (5%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
V N ++ VI +F + G EE+++ +M R P E T +++S+ G + +
Sbjct: 278 VVPNHFTYTVVIGSFVKEGLLEESMQVLGKMRMSRLVPEEATYSSLISLSARHGRGEHAV 337
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK-- 136
++E+++ GI+PS LLA+Y KS + A L EM +R+ + G +I+
Sbjct: 338 MLYEEMRAHGIVPSNYTCASLLALYDKSEDYSKALSLFSEMERSRVVIDEVIYGILIRIY 397
Query: 137 ---GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
G +DD + F++++ G + Y A+ + G +RA V+ R
Sbjct: 398 GKIGLYDD------AQRTFEEIDNAGLLSDEQTYVAMAQVHMNAGNYDRALLVMGSMRSR 451
Query: 194 GLFPELFRHNKLV 206
+ P LF ++ L+
Sbjct: 452 NVTPSLFSYSSLL 464
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY +I RM SGV R+ +FN +I + GG+ E+A + + +++ +E+
Sbjct: 765 GKLYS-AASIYDRMIFSGVPRSLQTFNIMISVYGLGGKLEKATEMFTAAQELGLPIDEKL 823
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L+ Y AG ++ F +K GI+P + + ++ YA S DDA + EMH
Sbjct: 824 YTNMLNFYGKAGRHQDASLLFNRMKEQGIMPGKISFNSMINAYATSGLHDDAEIVFQEMH 883
Query: 121 TN 122
++
Sbjct: 884 SH 885
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +++ + +RM E G+ SFN++I A+ G ++A + EM P+ T
Sbjct: 834 AGRHQDASLLFNRMKEQGIMPGKISFNSMINAYATSGLHDDAEIVFQEMHSHGQVPDSMT 893
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ Y + +++E Q + SGI PS + L+ + + D+A + +M
Sbjct: 894 YLALIRAYSESRCYSKAEETIQNMLGSGITPSCPHFSHLIFAFLTEGQIDEAQRICSQM 952
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ + + E G+ + + ++ + + GR ++A + M++ P + +
Sbjct: 799 GGKLEKATEMFTAAQELGLPIDEKLYTNMLNFYGKAGRHQDASLLFNRMKEQGIMPGKIS 858
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++++ Y +GL D+++ FQE+ S G +P M Y L+ Y++S + A + M
Sbjct: 859 FNSMINAYATSGLHDDAEIVFQEMHSHGQVPDSMTYLALIRAYSESRCYSKAEETIQNML 918
Query: 121 TNRISN-----IHQVTGQMIKGEFDD 141
+ I+ H + + +G+ D+
Sbjct: 919 GSGITPSCPHFSHLIFAFLTEGQIDE 944
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E +L +M S + +++++I + GR E A+ Y EM P+ T
Sbjct: 296 GLLEESMQVLGKMRMSRLVPEEATYSSLISLSARHGRGEHAVMLYEEMRAHGIVPSNYTC 355
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++L++Y + ++ F E++ S ++ + Y +L+ +Y K +DDA +E+
Sbjct: 356 ASLLALYDKSEDYSKALSLFSEMERSRVVIDEVIYGILIRIYGKIGLYDDAQRTFEEI 413
>gi|255661136|gb|ACU25737.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 426
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 34/229 (14%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI-------SNIHQVTGQMIKGEFDDE---------------------SNWQMV------ 148
I +++ + G+ ++ E + S W V
Sbjct: 214 NIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWSKVGKLDRA 273
Query: 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+F KL G + Y ++ A GL A R+L E + P
Sbjct: 274 AMLFQKLRSSGVDIDQVLYQTMIVAYEKAGLVAHAKRLLHELKRPDNIP 322
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y ++++++K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 34/227 (14%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M S V+ N ++N +I F G ++ + + EME+ C PN T ++ YC G
Sbjct: 1 MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-------- 125
+DE+ + + S G+ P+++ Y +++ + +A+ +L+EM +
Sbjct: 61 IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120
Query: 126 ---------NIHQ---VTGQMIKGEFDDE--------------SNWQMVEYVFDKLNCEG 159
N HQ + +M++ N FD++ G
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180
Query: 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
R Y L++ GL A R+L+E T+ G P + +N +
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFI 227
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L MS G+ N S+N +I + G +EA + EM P+E T
Sbjct: 59 GRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTY 118
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ YC G ++ E+ +G+ PSV+ Y L+ K+ + A D+M
Sbjct: 119 NTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRI 178
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + +I G F + + +++ G+ + YNA + L E
Sbjct: 179 RGLRPNERTYTTLIDG-FSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERME 237
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A V+ E ++GL P++ ++ ++
Sbjct: 238 EALGVVQEMVEKGLAPDVVSYSTII 262
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 100/216 (46%), Gaps = 2/216 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE IL M G + ++N ++ + + G F +A+ + EM + P+ T
Sbjct: 94 GSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTY 153
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ C A ++ + E F +++ G+ P+ Y L+ +++ ++AY +L+EM
Sbjct: 154 TALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTE 213
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ S I G E + + V + + +G + Y+ ++ G +
Sbjct: 214 SGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVE-KGLAPDVVSYSTIISGFCRKGELD 272
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV-DVHRMWE 216
RA ++ E ++G+ P+ ++ L+ + ++ R+ E
Sbjct: 273 RAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTE 308
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E IL+ M+ESG + + ++NA I R EEA+ EM + P+ +
Sbjct: 199 GLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSY 258
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++S +C G +D + + QE+ G+ P + Y L+ + R +A L EM
Sbjct: 259 STIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM 316
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 81/196 (41%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
+M G+ N ++ +I+ F + G EA + EM + P+ T A + +C
Sbjct: 173 FDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCV 232
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
++E+ QE+ G+ P V+ Y +++ + + D A+ + EM +S
Sbjct: 233 LERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVT 292
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+I+G + + + + L+ G Y L+ A G +A + DE
Sbjct: 293 YSSLIQGLCEMRRLTEACDLSQEMLDM-GLPPDEFTYTTLINAYCVEGDLNKALHLHDEM 351
Query: 191 TKRGLFPELFRHNKLV 206
+G P+ ++ L+
Sbjct: 352 IHKGFLPDAVTYSVLI 367
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 96/236 (40%), Gaps = 32/236 (13%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E GV+ ++ +++++I+ + R EA EM + P+E T +++ YC G
Sbjct: 281 MVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGD 340
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++++ E+ G LP + Y +L+ K R +A LL ++
Sbjct: 341 LNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKL-------------- 386
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ES V Y NC + + AL++ GL A RV + +R
Sbjct: 387 -----IYEESVPSDVTYDTLIENCS--NIEFKSVVALIKGFCMKGLMHEADRVFESMVER 439
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGGAYT-AISVWLNKMYEMFMMGEDLPQLATVVV 248
P + V++V +H GG A +++ ++ F +P TV+
Sbjct: 440 NHKP-----GEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGF-----VPHTVTVIT 485
>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74900, mitochondrial; AltName: Full=Protein
ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
Precursor
gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
Length = 482
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 100/234 (42%), Gaps = 37/234 (15%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G+ N ++N +++ F + G+ A + ++EM+K C+ + T V+ +
Sbjct: 217 VLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFG 276
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
AG + ++ F E+ G+LPSV Y ++ V K + ++A + +EM N
Sbjct: 277 VAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVT 336
Query: 125 SNIHQVTGQMIKGEFD-DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER- 182
+ + G GEF E Q +E + N + Y + +R+Y+ E LGL E+
Sbjct: 337 TYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM 396
Query: 183 ------------------------------AARVLDEATKRGLFPELFRHNKLV 206
A ++L E +RG P F N+++
Sbjct: 397 GSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVL 450
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 91/206 (44%), Gaps = 6/206 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ +++ RM + + +F V E + G+ ++A+K ++ M + C + +
Sbjct: 106 LHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFN 165
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+L V C + V+++ E F+ ++ + +V Y ++L + R A +L EM
Sbjct: 166 TILDVLCKSKRVEKAYELFRALRGRFSVDTV-TYNVILNGWCLIKRTPKALEVLKEMVER 224
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFD--KLNCEGYGLGMRFYNALLEALWCLGLR 180
I+ M+KG F E+ + K +CE + + Y ++ G
Sbjct: 225 GINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCE---IDVVTYTTVVHGFGVAGEI 281
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+RA V DE + G+ P + +N ++
Sbjct: 282 KRARNVFDEMIREGVLPSVATYNAMI 307
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 2/193 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G ++ SFN +++ + R E+A + + + + R + T +L+ +C
Sbjct: 152 MHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL-RGRFSVDTVTYNVILNGWCLIKR 210
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ E +E+ GI P++ Y +L + ++ + A+ EM R I VT
Sbjct: 211 TPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEM-KKRDCEIDVVTYT 269
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ F + VFD++ EG + YNA+++ L E A + +E +R
Sbjct: 270 TVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR 329
Query: 194 GLFPELFRHNKLV 206
G P + +N L+
Sbjct: 330 GYEPNVTTYNVLI 342
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 6/198 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K + + M GV + ++NA+I+ + E A+ + EM + +PN T
Sbjct: 278 AGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTT 337
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ AG +E Q +++ G P+ Y M++ Y++ + + A GL ++M
Sbjct: 338 YNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMG 397
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE----GYGLGMRFYNALLEALWC 176
+ +I G F + + MV V KL E G+ +N +L L
Sbjct: 398 SGDCLPNLDTYNILISGMFVRKRSEDMV--VAGKLLLEMVERGFIPRKFTFNRVLNGLLL 455
Query: 177 LGLRERAARVLDEATKRG 194
G + A +L +K G
Sbjct: 456 TGNQAFAKEILRLQSKSG 473
>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 784
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M + ++ S+N +++ + G+ EA ++M+ PN T ++
Sbjct: 230 EAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILV 289
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S YC G + E+ + + + +LP V Y ML+ K + D+A+ L DEM ++
Sbjct: 290 SGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLL 349
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+I G FD S+ + E + DK+ +G YN +++ G + A
Sbjct: 350 PDVVTYNTLINGCFDCSSSLKGFELI-DKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGN 408
Query: 186 VLDEATKRGLFPELFRHNKLV 206
L + + G P+ N L+
Sbjct: 409 ELRKMEESGFSPDCVTFNTLI 429
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 96/198 (48%), Gaps = 3/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ +M GV N+ ++N V++ + + G+ + A +ME+ P+ T +++ YC
Sbjct: 374 LIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYC 433
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG + E+ E+ G+ + + +L + DDAY LL + R + +
Sbjct: 434 KAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSA-SKRGYFVDE 492
Query: 130 VT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
V+ G +I G F D + + ++ ++D++ + + YN ++ L G +++ L+
Sbjct: 493 VSYGTLIMGYFKDGKSVEAMK-LWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLN 551
Query: 189 EATKRGLFPELFRHNKLV 206
E + GL P+ +N ++
Sbjct: 552 ELLESGLVPDETTYNTII 569
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 2/219 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L +M ESG + + +FN +I + + GR EA + EM + N TL +L C
Sbjct: 410 LRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCG 469
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
+D++ + G + Y L+ Y K + +A L DEM I
Sbjct: 470 ERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIIT 529
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
MI G Q ++ + + L G YN ++ G E+A + ++
Sbjct: 530 YNTMIGGLCHSGKTDQSIDKLNELLE-SGLVPDETTYNTIILGYCREGQVEKAFQFHNKM 588
Query: 191 TKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNK 229
K+ P+LF N L+ + M + A + W++K
Sbjct: 589 VKKSFKPDLFTCNILLRGLCTEGMLD-KALKLFNTWISK 626
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 93/209 (44%), Gaps = 2/209 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS S+ G + S+ +I + + G+ EA+K + EM++ P+ T ++ C
Sbjct: 479 LLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLC 538
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G D+S ++ E+ SG++P Y ++ Y + + + A+ ++M
Sbjct: 539 HSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLF 598
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+++G E +F+ +G + YN ++ L E A +L E
Sbjct: 599 TCNILLRG-LCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAE 657
Query: 190 ATKRGLFPELFRHNKLVWSV-DVHRMWEG 217
++ L P+ + +N ++ ++ D RM E
Sbjct: 658 MEEKKLGPDCYTYNAILSALADAGRMKEA 686
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 83/194 (42%), Gaps = 1/194 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L M +G+ N ++FN ++ + + G +EA + M + P+ T
Sbjct: 261 GKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTY 320
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G +DE+ E+++ +LP V+ Y L+ + + L+D+M
Sbjct: 321 NMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEG 380
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + VT ++ + E K+ G+ +N L+ G
Sbjct: 381 KGVKP-NAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLS 439
Query: 182 RAARVLDEATKRGL 195
A R++DE +++GL
Sbjct: 440 EAFRMMDEMSRKGL 453
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G A ++ ++N +I + RFEEA EME+ + P+ T A+LS AG + E+
Sbjct: 627 GKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEA 686
Query: 78 KEQFQEIKSSGIL 90
+E I G L
Sbjct: 687 EEFMSRIVEQGKL 699
>gi|302761046|ref|XP_002963945.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
gi|300167674|gb|EFJ34278.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
Length = 376
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 17/212 (8%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E A+L M+E G + +N +I+ + G+ EEA + M K C P T +
Sbjct: 80 FSEALAVLDVMAERGCIPPAIVYNQLIDGLCKAGKVEEAFELSTTMVKNGCSPTLYTYNS 139
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-- 121
+++ C G DE+++ QE+ SG P V+ Y +L+ + + A + DEM +
Sbjct: 140 LINGLCLQGKTDEARDFLQEMADSGYNPDVVTYTVLINSLRRDGNFRAAVDVFDEMVSKG 199
Query: 122 ----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+R S + + G E Q+V+ +K LG F+N L+ L
Sbjct: 200 GCVPDRASYMPLLIG------LCKEGCVQLVQEFLEKHRAR-LDLGSFFHNLLISTLSKH 252
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
G + A +V E PEL N + ++
Sbjct: 253 GKLDDARKVFRELAS----PELVHFNSFMSAL 280
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 3/212 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ +L +M E + ++ +++ F + +F EA+ M + C P
Sbjct: 43 GLLEQACNVLDKMLEGKYEATTFTYGRLVDGFLRLSKFSEALAVLDVMAERGCIPPAIVY 102
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C AG V+E+ E + +G P++ Y L+ + D+A L EM
Sbjct: 103 NQLIDGLCKAGKVEEAFELSTTMVKNGCSPTLYTYNSLINGLCLQGKTDEARDFLQEM-A 161
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF-YNALLEALWCLGLR 180
+ N VT ++ + N++ VFD++ +G + R Y LL L G
Sbjct: 162 DSGYNPDVVTYTVLINSLRRDGNFRAAVDVFDEMVSKGGCVPDRASYMPLLIGLCKEGCV 221
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
+ L++ R F HN L+ ++ H
Sbjct: 222 QLVQEFLEKHRARLDLGSFF-HNLLISTLSKH 252
>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 543
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 4/204 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ + G ++ ++ V+++ R+EEA K +M C P+E T AV++ C
Sbjct: 252 VLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLC 311
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN--- 126
G V + + ++ G P ++ Y ++ K R D+A LL E+ +S
Sbjct: 312 QKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCI 371
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAAR 185
QVT I + + V D+++ G + YN +++ C + E A
Sbjct: 372 PDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALD 431
Query: 186 VLDEATKRGLFPELFRHNKLVWSV 209
+L+ GL P+ + L + +
Sbjct: 432 LLNLMVSNGLCPDTTTYKSLAFGL 455
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 6/178 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIK----AYVEMEKVRCDPN 57
G +L++MSE G + +++++++ + R +EAIK EM C P+
Sbjct: 314 GFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPD 373
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSNRWDDAYGLL 116
+ T +++ C GL D + + E+ G +P + Y C++ KS + ++A LL
Sbjct: 374 QVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLL 433
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ M +N + T + + E + +F ++ G YNA+L L
Sbjct: 434 NLMVSNGLCP-DTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGL 490
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++E +L++M + A + +FNAVI + Q G A K +M + C P+ T +
Sbjct: 281 WEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSS 340
Query: 64 VLSVYCFAGLVDES----KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ C VDE+ KE E+ S +P + + ++ + +D A ++DEM
Sbjct: 341 IMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEM 400
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/216 (18%), Positives = 82/216 (37%), Gaps = 37/216 (17%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N ++ + + G + A + ++ V P+ T ++ C G V ++ F ++
Sbjct: 130 TYNTMVNGYCRAGNIDAARRM---IDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDM 186
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----------NRISNI------- 127
G PSV+ Y +LL K + + A LLDEM + N + N
Sbjct: 187 LHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDV 246
Query: 128 -----------------HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
VT + W+ + + K+ +NA+
Sbjct: 247 GEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAV 306
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +L G RA +VL + ++ G P++ ++ ++
Sbjct: 307 ITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIM 342
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 106/256 (41%), Gaps = 22/256 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + M G+A +S FN +I+A+ + G + A + EM + +P+ T
Sbjct: 370 GCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTY 429
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V++ C G +D++ E+F ++ G+ PS+ Y L+ + A L+ +M
Sbjct: 430 STVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMN 489
Query: 122 N----RISNIHQVTGQMIK-GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
I + + + K G D N +FD G + YN L++
Sbjct: 490 KGMRPDIGCFNFIINNLCKLGRVMDAQN------IFDFTISIGLHPNVMVYNTLMDGYCL 543
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWS-VDVHRMWEG----------GAYTAISV 225
+G E A RV D G+ P + + LV V R+ EG G + ++
Sbjct: 544 VGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTL 603
Query: 226 WLNKMYEMFMMGEDLP 241
+ ++ +F G +P
Sbjct: 604 YNIILHGLFQAGRTVP 619
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 97/207 (46%), Gaps = 1/207 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ +AIL +M + GV ++ ++N++I + G+++EA++ +M P+ TL +++
Sbjct: 269 KAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLM 328
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ C G + ++++ F + G + Y ++L YA D L + M ++ I+
Sbjct: 329 ASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIA 388
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +IK + +F+++ +G + Y+ ++ AL +G + A
Sbjct: 389 PDSHIFNVLIKA-YAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVE 447
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVH 212
++ +G+ P + ++ L+ H
Sbjct: 448 KFNQMIDQGVAPSISTYHFLIQGFCTH 474
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/236 (19%), Positives = 107/236 (45%), Gaps = 36/236 (15%)
Query: 10 ILSRMSESGVA--RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+L M+E G N+ ++N VI+ F + G +A + EM + P+ T V++
Sbjct: 201 LLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNA 260
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY---------GLLDE 118
C A +D+++ +++ G+LP Y L+ Y+ + +W +A G+L +
Sbjct: 261 LCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPD 320
Query: 119 MHT-----------NRISNIHQVTGQM-IKGEFDDESNWQM-------------VEYVFD 153
+ T +I + V M +KG+ D ++++ + +F+
Sbjct: 321 VVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFN 380
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ +G +N L++A G+ +RA + +E ++G+ P++ ++ ++ ++
Sbjct: 381 LMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAAL 436
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 89/208 (42%), Gaps = 1/208 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + Q I G+ N +N +++ + G+ E A++ + M PN
Sbjct: 510 GRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVY 569
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC G +DE F+EI GI PS Y ++L ++ R A EM
Sbjct: 570 GTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTE 629
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I+ ++ G F + + + + +F +L+ + + N ++ ++ + E
Sbjct: 630 SGIAMDRYTYSIVLGGLFKNSCSDEAI-LLFKELHAMNVKIDITTLNIMIAGMFQIRRVE 688
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
A + ++ GL P + ++ ++ ++
Sbjct: 689 EAKDLFASISRSGLVPSVVTYSIMMTNL 716
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G L K +L M++ G+ + FN +I + GR +A + + PN
Sbjct: 475 GDLLKAKDLVLQMMNK-GMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMV 533
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ YC G ++ + F + S+GI P+V+ Y L+ Y K R D+ L E+
Sbjct: 534 YNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREI 592
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 2 GLYKECQAILSR-----MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GL++ + + ++ M+ESG+A + +++ V+ + +EAI + E+ +
Sbjct: 610 GLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKI 669
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+ TL +++ V+E+K+ F I SG++PSV+ Y +++ K ++A +
Sbjct: 670 DITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMF 729
Query: 117 DEM 119
M
Sbjct: 730 SSM 732
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 1/185 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
++M + GVA + +++ +I+ F G +A ++M P+ +++ C
Sbjct: 449 FNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCK 508
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G V +++ F S G+ P+VM Y L+ Y + ++A + D M + I V
Sbjct: 509 LGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVV 568
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
G ++ G + +F ++ +G YN +L L+ G A E
Sbjct: 569 YGTLVNG-YCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEM 627
Query: 191 TKRGL 195
T+ G+
Sbjct: 628 TESGI 632
>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic [Vitis vinifera]
Length = 929
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ + + G+ + +N +I AF G + AI+ EM+K R P RT ++ +
Sbjct: 520 AVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGF 579
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+G + + E F ++ SG +P+V + L+ + + + A +LDEM IS
Sbjct: 580 ARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNE 639
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G + EY F KL EG L + Y ALL+A G + A V
Sbjct: 640 HTYTTIMHGYASLGDTGKAFEY-FTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTR 698
Query: 189 EATKRGLFPELFRHNKLV 206
E + + + F +N L+
Sbjct: 699 EMSSQKIPRNTFVYNILI 716
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M SG +FNA+I + + E+A++ EM PNE T ++ Y
Sbjct: 591 IFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYA 650
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ E F ++K+ G+ V Y LL KS R A + EM + +I
Sbjct: 651 SLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTF 710
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I G W+ E + ++ EG + Y + + A G +RA + + E
Sbjct: 711 VYNILIDGWARRGDVWEAAE-LMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQE 769
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P + + L+
Sbjct: 770 MEVVGVKPNIKTYTTLI 786
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M + GV + ++ + I A + G + A K EME V PN +T ++
Sbjct: 727 EAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLI 786
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ A L +++ + FQE+KS+G+ P Y C++ ++ ++++
Sbjct: 787 HGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSLLSRAS 829
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 59/120 (49%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RN+ +N +I+ + + G EA + +M++ P+ T
Sbjct: 688 GRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTY 747
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ ++ C AG + + + QE++ G+ P++ Y L+ +A+++ + A EM +
Sbjct: 748 TSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKS 807
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 1/176 (0%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N+ + +I A Q +A EME+ D ++ Y G ++ F
Sbjct: 393 NAIIYGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVF 452
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+K G PSV+ Y L+ +Y K + A + M I + + +I G F
Sbjct: 453 DRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLING-FVR 511
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+W VF+ + +G + YN ++ A +G +RA R + E K P
Sbjct: 512 LKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRP 567
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/212 (16%), Positives = 88/212 (41%), Gaps = 9/212 (4%)
Query: 3 LYKECQA--------ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC 54
+Y CQA ++ M E G+ D ++ +++ + G E+ + + +++
Sbjct: 401 IYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGF 460
Query: 55 DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG 114
P+ + ++++Y G V ++ E + ++ +GI ++ Y ML+ + + W +A+
Sbjct: 461 TPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFA 520
Query: 115 LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ +++ + + + +I+ F N ++ E + R + ++
Sbjct: 521 VFEDVVKDGLKPDVVLYNNIIRA-FCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGF 579
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G RA + D G P + N L+
Sbjct: 580 ARSGDMRRALEIFDMMRWSGCIPTVHTFNALI 611
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 40/231 (17%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M +S N+ + ++I++F + GR E+ K + EM C P+ R L A + AG
Sbjct: 502 QMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAG 561
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLA------------------------------- 101
+ + F+EIKS G +P VM Y +L+
Sbjct: 562 ETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYN 621
Query: 102 ----VYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG--EFDDESNWQMVEYVFDKL 155
+ KS + + AY LL+EM T G +I G + D M +F++
Sbjct: 622 TFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYM---LFEEA 678
Query: 156 NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G L + Y++L++ +G + A +++E ++GL P ++ N L+
Sbjct: 679 KSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLL 729
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 98/205 (47%), Gaps = 14/205 (6%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + E ++L R G + ++N ++ + GR EA++ + EM+K PN T
Sbjct: 351 AGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKK-DAAPNLST 409
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ + C AG V+ + + +K +G+ P+VM +++ K+ + D+A + + M+
Sbjct: 410 YNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMN 469
Query: 121 TNRISNIHQVT------GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
++I + +VT G +G DD +++ E + D + Y +L+++
Sbjct: 470 -HKICSPDEVTFCSLIDGLGKQGRVDDA--YRLYEQMLDSDKIPNAVV----YTSLIKSF 522
Query: 175 WCLGLRERAARVLDEATKRGLFPEL 199
+ G +E ++ E RG P+L
Sbjct: 523 FKCGRKEDGHKIFKEMIHRGCSPDL 547
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 10/202 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ +M E G + F VI F + GR + A+ EM K C + L V +
Sbjct: 219 TLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEM-KSNCLHADIVLYNV-CID 276
Query: 69 CF--AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
CF AG VD + + F EIKS G+LP + Y ++ V K NR D+A + ++M NR
Sbjct: 277 CFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVP 336
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
MI G + + + ++ G + YN +L CLG + R
Sbjct: 337 CAYAYNTMIMG-YGSAGKFDEAYSLLERQKARGCIPSVIAYNCILT---CLGKKGRLGEA 392
Query: 187 LD--EATKRGLFPELFRHNKLV 206
L E K+ P L +N L+
Sbjct: 393 LRTFEEMKKDAAPNLSTYNVLI 414
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 59/119 (49%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E + M E G ++ ++N I+ F + G+ +A + EM+ P T
Sbjct: 595 AGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVT 654
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+V+ +DE+ F+E KS+G+ +V+ Y L+ + K R D+AY +++E+
Sbjct: 655 YGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEEL 713
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 3/186 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E I+ + + G+ N ++N +++A + EA+ + M+ ++ PN T
Sbjct: 701 GRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITY 760
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C +++ +QE++ G+ P+ + Y ++A AK+ +A L +
Sbjct: 761 SILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKA 820
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEY-VFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N +I+G S M Y +F++ +G + + ALL+AL
Sbjct: 821 NGGVPDSASYNAIIEGL--SYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDALQKDECL 878
Query: 181 ERAARV 186
E+AA V
Sbjct: 879 EQAAIV 884
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 1/189 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +G+ N ++++I+ F + GR +EA E+ + PN T +L
Sbjct: 670 EAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLL 729
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
A ++E+ FQ +K+ P+ + Y +L+ + +++ A+ EM +
Sbjct: 730 DALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLK 789
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
MI G N +F++ G YNA++E L A +
Sbjct: 790 PNTITYTTMIAG-LAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYK 848
Query: 186 VLDEATKRG 194
+ +E +G
Sbjct: 849 IFEETRMKG 857
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 94/210 (44%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E +L M E G+ + S++ ++ + G+ + A+K + + C P+
Sbjct: 245 GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAY 304
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
+++ C AG +DE+ + F++++ + P V+ + L+ K +R +A +L+ M
Sbjct: 305 STLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 364
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N I+ + G G+ D + VF ++ G + YN+L+
Sbjct: 365 RNCTPNVITYSSLIDGLCKTGQVRD------AQEVFKRMIVRGIEPNVVTYNSLIHGFCM 418
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ A +++E T G P++ +N L+
Sbjct: 419 TNGVDSALLLMEEMTATGCLPDIITYNTLI 448
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 96/218 (44%), Gaps = 2/218 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E Q +L M + N +++++I+ + G+ +A + + M +PN T
Sbjct: 349 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVT 408
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +C VD + +E+ ++G LP ++ Y L+ K+ R +A L +M
Sbjct: 409 YNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMK 468
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ N +T + G F M +FD + + + ++ L+E GL
Sbjct: 469 A-KFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLV 527
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWS-VDVHRMWEG 217
+ A R+L+E P+++ + LV V RM E
Sbjct: 528 DDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEA 565
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 88/197 (44%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M+ +G + ++N +I+ + GR EA + + +M+ C+P+ T ++ +C
Sbjct: 428 LMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFC 487
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+D ++ F ++ +LP V+ + L+ Y + DDA LL+EM + S
Sbjct: 488 KLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVY 547
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ G F V ++ G + Y AL++A G A R+L+E
Sbjct: 548 TYTSLVDG-FCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEE 606
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P + + L+
Sbjct: 607 MVGNGVQPNVITYRSLI 623
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 99/236 (41%), Gaps = 44/236 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M ESG+A N +++ VI F + + + A K + +M + C PN T +LS C
Sbjct: 183 LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 242
Query: 70 FAGLVDESKEQFQEIKSSGI-----------------------------------LPSVM 94
GL+DE+ E E++ G+ P V+
Sbjct: 243 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV 302
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNR----ISNIHQVTGQMIKGEFDDESNWQMVEY 150
Y L+A K+ R D+A L ++M N + + + KG+ E+ Q++E
Sbjct: 303 AYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQ-QVLET 361
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ D+ NC + Y++L++ L G A V RG+ P + +N L+
Sbjct: 362 MEDR-NCTP---NVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLI 413
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 9/209 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ Q + RM G+ N ++N++I F + A+ EM C P+ T
Sbjct: 385 GQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITY 444
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G E+ F ++K+ P V+ Y L+ + K R D A L D+M
Sbjct: 445 NTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLK 504
Query: 122 NRISNIHQVTGQMIKGEFD----DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ +++G + D++ + E V + + Y Y +L++ +
Sbjct: 505 QAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYT-----YTSLVDGFCKV 559
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G A RVL KRG P + + L+
Sbjct: 560 GRMVEARRVLKRMAKRGCQPNVVTYTALI 588
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 36/186 (19%)
Query: 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
+N ++ +I+ + R EA + +M+K PNE T +++ +C V +
Sbjct: 124 KNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLL 183
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140
+E+K SG+ P+V+ Y ++ + + + D AY L
Sbjct: 184 LKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLF------------------------ 219
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
QMVE G + YN LL L GL + A +LDE +RGL P+ F
Sbjct: 220 ----RQMVE--------NGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKF 267
Query: 201 RHNKLV 206
++ L+
Sbjct: 268 SYDTLM 273
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 11/200 (5%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M + V + +F+ ++E + G ++A + EM C P+ T +++
Sbjct: 496 RTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDG 555
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+C G + E++ + + G P+V+ Y L+ + ++ + AY LL+EM N +
Sbjct: 556 FCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQP- 614
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKL----NCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +T + + G F + + + ++L NC+ M Y +++ L C R A
Sbjct: 615 NVITYRSLIGGFCGTGDLEEARKILERLERDENCKA---DMFAYRVMMDGL-CRTGRMSA 670
Query: 184 ARVLDEATKRGLFPELFRHN 203
A L EA K+ P RH+
Sbjct: 671 ALELLEAIKQSGTPP--RHD 688
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++M + G N ++N +I F + + A EM++ PN T V+
Sbjct: 144 EATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVI 203
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+C VD + + F+++ +G +P+++ Y LL+ ++ D+AY LLDEM
Sbjct: 204 HGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMR 258
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 59/119 (49%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL + + +L M S + + ++ ++++ F + GR EA + M K C PN T
Sbjct: 524 AGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVT 583
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ +C AG + +E+ +G+ P+V+ Y L+ + + ++A +L+ +
Sbjct: 584 YTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERL 642
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L RM++ G N ++ A+I+AF + G+ A + EM PN T
Sbjct: 560 GRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITY 619
Query: 62 EAVLSVYCFAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +C G ++E+++ + + + + Y +++ ++ R A LL+ +
Sbjct: 620 RSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIK 679
Query: 121 TNRISNIHQVTGQMIKG 137
+ H + +I+G
Sbjct: 680 QSGTPPRHDIYVALIRG 696
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 1/147 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVY 68
+L M +GV N ++ ++I F G EEA K +E+ C + ++
Sbjct: 603 LLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGL 662
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G + + E + IK SG P Y L+ + A +L+EM +R S +
Sbjct: 663 CRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPN 722
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKL 155
+ + E E + + D+L
Sbjct: 723 AEAYEAVIQELAREGRHEEANALADEL 749
>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
gi|194700420|gb|ACF84294.1| unknown [Zea mays]
gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
Length = 598
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M G A + ++N +++A +G + +A++ M C+PN T ++ C
Sbjct: 185 VLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMC 244
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VD+++E + S G P+ + Y +L + RW DA +LDEM ++
Sbjct: 245 REGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPP-NE 303
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
T +I + Q V +K++ G + YNA++ + G + A +L
Sbjct: 304 ATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSN 363
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
G P++ +N ++ + WE
Sbjct: 364 MQSFGCKPDIVTYNTVLKGLCSADRWE 390
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 92/232 (39%), Gaps = 37/232 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP----- 56
GL ++ L +MS+ G N ++NAVI + G + A++ M+ C P
Sbjct: 317 GLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTY 376
Query: 57 -------------------------NER-----TLEAVLSVYCFAGLVDESKEQFQEIKS 86
N+R T ++S +C GL+ ++ E F+++
Sbjct: 377 NTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPE 436
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
G P+ Y ++ K+ + + A LL+EM N+ N ++ +++ + E +
Sbjct: 437 KGCNPNSTTYSTIIGGLTKAGKMEQALELLNEM-ANKGFNTDKMY-RVLTESLNKEDKIE 494
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
V V KL G YN +L L G + A VL + G P+
Sbjct: 495 EVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPD 546
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 11/219 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL M N + N +I + G ++ +M K C N T AV+S C
Sbjct: 290 ILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMC 349
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VD + E ++S G P ++ Y +L ++RW+DA L+ +M N +
Sbjct: 350 EQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNS 409
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I Q E VF ++ +G Y+ ++ L G E+A +L+E
Sbjct: 410 TFNTIISFWCQKGLILQAFE-VFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNE 468
Query: 190 ATKRG---------LFPELFRHNKLVWSVD-VHRMWEGG 218
+G L L + +K+ V VH++ + G
Sbjct: 469 MANKGFNTDKMYRVLTESLNKEDKIEEVVQVVHKLQDSG 507
>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 687
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ +E +L +M G + N ++N ++ G E+A + +M ++ + + T
Sbjct: 216 GMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTY 275
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ ++ YC G ++E+ +E+ S G +P+V+ Y ++ K R DA LLD M
Sbjct: 276 DPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVN 335
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G + N +F +L + YN L++ L LG +
Sbjct: 336 KNLMPDLVSYNTLIYG-YTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLD 394
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+ DE K G P++F V
Sbjct: 395 VAMRLKDEMIKHGPDPDVFTFTTFV 419
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 83/194 (42%), Gaps = 36/194 (18%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G+ ++N ++++F + G +EA++ +M+ + C PN+ T +++ +G
Sbjct: 193 MVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGE 252
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++++KE Q++ G+ SV Y L+ Y + + ++A L +EM +
Sbjct: 253 MEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLS------------ 300
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
G + YN ++ L G A ++LD +
Sbjct: 301 ------------------------RGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNK 336
Query: 194 GLFPELFRHNKLVW 207
L P+L +N L++
Sbjct: 337 NLMPDLVSYNTLIY 350
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 1/145 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE ++ +M +G+ + ++ ++I A G +A ++EM P+ T
Sbjct: 496 GNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTY 555
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G + + F E+ G+ P+V+ Y L+ K + D AY EM
Sbjct: 556 TVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQA 615
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQ 146
IS ++ T ++ E + +WQ
Sbjct: 616 KGISP-NKYTYTILINENCNLGHWQ 639
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 11/202 (5%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G + ++N I+ + G +EA + +M P+ T +++ + AG
Sbjct: 473 MLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGH 532
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIH 128
+ +++ F E+ S GI PSV+ Y +L+ YA R A EM H N I+
Sbjct: 533 LRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNA 592
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ G + D N+ F ++ +G Y L+ LG + A R+
Sbjct: 593 LINGLCKVRKMDQAYNF------FAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYK 646
Query: 189 EATKRGLFPELFRHNKLVWSVD 210
+ R + P+ H L+ ++
Sbjct: 647 DMLDREIQPDSCTHRSLLKHLN 668
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +A+ M G+ + ++ +I ++ GR + AI + EM + PN T
Sbjct: 530 AGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVIT 589
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++ C +D++ F E+++ GI P+ Y +L+ W +A L +M
Sbjct: 590 YNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDM 648
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 85/212 (40%), Gaps = 11/212 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +L M + + S+N +I + + G EA + E+ P+ T
Sbjct: 321 GRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTY 380
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
++ C G +D + E+ G P V + + + K A L DEM
Sbjct: 381 NTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLN 440
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+R + I ++ G++ G D + M E + + G+ + YN ++ L
Sbjct: 441 RGLQPDRFAYITRIVGELKLG--DPSKAFGMQEEMLAR----GFPPDLITYNVFIDGLHK 494
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
LG + A+ ++ + GL P+ + ++ +
Sbjct: 495 LGNLKEASELVKKMLYNGLVPDHVTYTSIIHA 526
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 1/206 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + + +A + ++N +I+ + G + A++ EM K DP+ T +
Sbjct: 360 EAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFV 419
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+C G + +KE F E+ + G+ P Y + K A+G+ +EM
Sbjct: 420 RGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFP 479
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
I G N + + K+ G Y +++ A G +A
Sbjct: 480 PDLITYNVFIDG-LHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARA 538
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDV 211
+ E +G+FP + + L+ S V
Sbjct: 539 LFLEMLSKGIFPSVVTYTVLIHSYAV 564
>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 453
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 6/179 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G+ N ++N +++ F + G+ A + ++EM+K C+ + T V+ +
Sbjct: 217 VLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFG 276
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
AG + ++ F E+ G+LPSV Y ++ V K + ++A + +EM N
Sbjct: 277 VAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVT 336
Query: 125 SNIHQVTGQMIKGEFD-DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ + G GEF E Q +E + N + Y + +R+Y+ E LGL E+
Sbjct: 337 TYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEK 395
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 91/206 (44%), Gaps = 6/206 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ +++ RM + + +F V E + G+ ++A+K ++ M + C + +
Sbjct: 106 LHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFN 165
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+L V C + V+++ E F+ ++ + +V Y ++L + R A +L EM
Sbjct: 166 TILDVLCKSKRVEKAYELFRALRGRFSVDTV-TYNVILNGWCLIKRTPKALEVLKEMVER 224
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFD--KLNCEGYGLGMRFYNALLEALWCLGLR 180
I+ M+KG F E+ + K +CE + + Y ++ G
Sbjct: 225 GINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCE---IDVVTYTTVVHGFGVAGEI 281
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+RA V DE + G+ P + +N ++
Sbjct: 282 KRARNVFDEMIREGVLPSVATYNAMI 307
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 2/193 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G ++ SFN +++ + R E+A + + + + R + T +L+ +C
Sbjct: 152 MHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL-RGRFSVDTVTYNVILNGWCLIKR 210
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ E +E+ GI P++ Y +L + ++ + A+ EM R I VT
Sbjct: 211 TPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEM-KKRDCEIDVVTYT 269
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ F + VFD++ EG + YNA+++ L E A + +E +R
Sbjct: 270 TVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR 329
Query: 194 GLFPELFRHNKLV 206
G P + +N L+
Sbjct: 330 GYEPNVTTYNVLI 342
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K + + M GV + ++NA+I+ + E A+ + EM + +PN T
Sbjct: 278 AGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTT 337
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ AG +E Q +++ G P+ Y M++ Y++ + + A GL ++M
Sbjct: 338 YNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM 396
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G N ++N +I G F + ME C+PN +T ++ Y
Sbjct: 326 MVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSE 385
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111
V+++ F+++ S LP++ Y +L++ R +D
Sbjct: 386 VEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSED 423
>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
Length = 927
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ + + G+ + +N +I AF G + AI+ EM+K R P RT ++ +
Sbjct: 499 AVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGF 558
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+G + + E F ++ SG +P+V + L+ + + + A +LDEM IS
Sbjct: 559 ARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNE 618
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G + EY F KL EG L + Y ALL+A G + A V
Sbjct: 619 HTYTTIMHGYASLGDTGKAFEY-FTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTR 677
Query: 189 EATKRGLFPELFRHNKLV 206
E + + + F +N L+
Sbjct: 678 EMSSQKIPRNTFVYNILI 695
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M SG +FNA+I + + E+A++ EM PNE T ++ Y
Sbjct: 570 IFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYA 629
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ E F ++K+ G+ V Y LL KS R A + EM + +I
Sbjct: 630 SLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTF 689
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I G W+ E + ++ EG + Y + + A G +RA + + E
Sbjct: 690 VYNILIDGWARRGDVWEAAE-LMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQE 748
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P + + L+
Sbjct: 749 MEVVGVKPNIKTYTTLI 765
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M + GV + ++ + I A + G + A K EME V PN +T ++
Sbjct: 706 EAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLI 765
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ A L +++ + FQE+KS+G+ P Y C++ ++ ++++
Sbjct: 766 HGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSLLSRAS 808
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 59/120 (49%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RN+ +N +I+ + + G EA + +M++ P+ T
Sbjct: 667 GRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTY 726
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ ++ C AG + + + QE++ G+ P++ Y L+ +A+++ + A EM +
Sbjct: 727 TSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKS 786
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 1/182 (0%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E N+ + +I A Q +A EME+ D ++ Y G +
Sbjct: 366 ERHTTLNAIIYGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEE 425
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
+ F +K G PSV+ Y L+ +Y K + A + M I + + +I
Sbjct: 426 KCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLI 485
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
G F +W VF+ + +G + YN ++ A +G +RA R + E K
Sbjct: 486 NG-FVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERH 544
Query: 196 FP 197
P
Sbjct: 545 RP 546
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/212 (16%), Positives = 88/212 (41%), Gaps = 9/212 (4%)
Query: 3 LYKECQA--------ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC 54
+Y CQA ++ M E G+ D ++ +++ + G E+ + + +++
Sbjct: 380 IYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGF 439
Query: 55 DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG 114
P+ + ++++Y G V ++ E + ++ +GI ++ Y ML+ + + W +A+
Sbjct: 440 TPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFA 499
Query: 115 LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ +++ + + + +I+ F N ++ E + R + ++
Sbjct: 500 VFEDVVKDGLKPDVVLYNNIIRA-FCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGF 558
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G RA + D G P + N L+
Sbjct: 559 ARSGDMRRALEIFDMMRWSGCIPTVHTFNALI 590
>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 479
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 9/206 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERT 60
G YKE M E G+ S N +I+A + E A + + EM C P+ T
Sbjct: 141 GFYKE-------MREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYT 193
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ C G + ++KE E++ G+ PSV+ Y L+ +SN D+A LL+EM
Sbjct: 194 YGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMI 253
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N I ++ G + Q +E + + + M Y+ L+ L G
Sbjct: 254 INGIEPNVFTYSSLMDGLCKSGHSSQAME-LLEVMVRRRLLPNMVTYSTLINGLCKEGKH 312
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A +LD +GL P+ + +++
Sbjct: 313 REAVEILDRMRLQGLKPDAGMYGRII 338
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 63/136 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +L M E G++ + S+ ++I Q +EAI+ EM +PN T
Sbjct: 205 GKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTY 264
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C +G ++ E + + +LP+++ Y L+ K + +A +LD M
Sbjct: 265 SSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRL 324
Query: 122 NRISNIHQVTGQMIKG 137
+ + G++I G
Sbjct: 325 QGLKPDAGMYGRIISG 340
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/217 (18%), Positives = 93/217 (42%), Gaps = 19/217 (8%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G+ N +++++++ + G +A++ M + R PN T +++ C
Sbjct: 248 LLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLC 307
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS---- 125
G E+ E ++ G+ P Y +++ + + +A +DEM IS
Sbjct: 308 KEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRA 367
Query: 126 ------NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+H + Q + D +Q+ + + G + + ++ L++ G
Sbjct: 368 SWTFHVKMHNMVVQGLCNNVDPTRAFQL----YLSMRTRGISVEIGTFDCLVKCFCKRGD 423
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+AAR+L+E G P+ + +W+V + +W+
Sbjct: 424 LNKAARILEEMILDGCIPD-----EGMWNVLMCGLWD 455
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 37/204 (18%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++ + +L RM + D F + + + R +AI+ + +ME + P +++
Sbjct: 66 FRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLT 125
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRW-DDAYGLLDEMHTN 122
V + V + ++E++ GI P+V+ +L+ K+ + A+ L EM N
Sbjct: 126 VFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREM-PN 184
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
R T Y L+ L LG +
Sbjct: 185 RGCQPDSYT-----------------------------------YGTLINGLCKLGKISQ 209
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A +LDE ++GL P + + L+
Sbjct: 210 AKELLDEMEEKGLSPSVVSYTSLI 233
>gi|410110077|gb|AFV61118.1| pentatricopeptide repeat-containing protein 123, partial
[Coelocarpum swinglei]
Length = 440
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 67/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+++ ++++S M +GV N+ S++A++ + + +F EA+ + EM +++C + T
Sbjct: 100 LFRDARSLISEMRTAGVMPNASSYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 159
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 160 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 219
Query: 123 RI 124
I
Sbjct: 220 NI 221
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 169 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 228
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ T
Sbjct: 229 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRT 288
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 289 SGVE-IDQILFQ 299
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 205 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 264
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ++++SG+ + + ++ Y ++ A LL E+
Sbjct: 265 TIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQTMIXAYERAGLVAHAKRLLHELKRP 324
Query: 120 -HTNRISNIHQVTG 132
+ R + IH + G
Sbjct: 325 DNIPRDTAIHILAG 338
>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 884
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 87/196 (44%), Gaps = 1/196 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ ++ +F+A I+ + G EEA +A+ EM K PN +++ C G
Sbjct: 584 MEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGK 643
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E+ + +E++ G+LP + +++ + K R A+ EMH ++ VT
Sbjct: 644 LHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTP-DTVTYN 702
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ G + + + +K+ G+ + YN ++ RA +LDE
Sbjct: 703 TLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAV 762
Query: 194 GLFPELFRHNKLVWSV 209
G+ P +N ++ +V
Sbjct: 763 GVVPNTVTYNTMMNAV 778
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +++L M + + ++N +I A+R GR +A+ M K C P+ T
Sbjct: 292 GYLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITF 351
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C G V E+++ F+ I+ G+ P+V Y L++ Y K+ A L +EM
Sbjct: 352 STIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRD 411
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I+ ++ G + E +F + Y+ + L G +
Sbjct: 412 KGIAPDGATFNILVAGNYKYGKEADSYE-LFRDWSLSSLVPDCSLYDVSVAGLCWAGQLD 470
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + L++ ++G+ P + N ++
Sbjct: 471 EAMQFLEDMLEKGMPPSVVAFNSVI 495
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 7/209 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E L M E G+ + +FN+VI A+ + G + A KAY M P+ T
Sbjct: 466 AGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSST 525
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L G + E+++ ++ G+ + + + +LL Y K A+ L EM
Sbjct: 526 CSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEME 585
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCL 177
I I G S +VE F +++ +G+ YN+L+ L
Sbjct: 586 ARGICPDAIAFSAFIDG----LSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNC 641
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G A ++ E ++GL P++F N ++
Sbjct: 642 GKLHEALKLEREMRQKGLLPDIFTTNIII 670
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 45/236 (19%), Positives = 101/236 (42%), Gaps = 36/236 (15%)
Query: 7 CQA--ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
CQA + M + G+A + +FN ++ + G+ ++ + + + P+ +
Sbjct: 400 CQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVS 459
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA---------YGL 115
++ C+AG +DE+ + +++ G+ PSV+ + ++A Y+++ D+A +GL
Sbjct: 460 VAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGL 519
Query: 116 LDEMHT-----------NRISNIHQVTGQMI-KGEFDDESNWQMV-------------EY 150
+ T R+ + +MI KG ++ + ++
Sbjct: 520 VPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHS 579
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
++ ++ G ++A ++ L GL E A E +K+G P F +N L+
Sbjct: 580 LWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLI 635
>gi|125558286|gb|EAZ03822.1| hypothetical protein OsI_25951 [Oryza sativa Indica Group]
Length = 1011
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 90/185 (48%), Gaps = 1/185 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y +L M+ESG++ + +FN++I+ F GG + A K +M+ P T A
Sbjct: 485 YDRVSPLLEHMNESGISPDECTFNSLIQMFATGGYPQRAKKLLGKMKYAGFKPKCETYAA 544
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ LV E+ + E+K+SG+ P+V+ Y +L+ +A++ + ++A + M +
Sbjct: 545 AITTLSRNYLVSEAIYLYNEMKASGVEPNVVVYGVLIDTFAETGQLEEALHYNNLMEESG 604
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I+ V +IK + + W+ + ++ ++ G + N++L LG+ +
Sbjct: 605 IAPNQIVLTSLIKA-YSKANCWKEAQDLYSRMKNMDGGPDIVASNSMLNLYANLGMVTKV 663
Query: 184 ARVLD 188
+ D
Sbjct: 664 KEIFD 668
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 88/216 (40%), Gaps = 22/216 (10%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + +L +M +G +++ A I + EAI Y EM+ +PN
Sbjct: 517 GGYPQRAKKLLGKMKYAGFKPKCETYAAAITTLSRNYLVSEAIYLYNEMKASGVEPNVVV 576
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ + G ++E+ ++ SGI P+ + L+ Y+K+N W +A L M
Sbjct: 577 YGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIVLTSLIKAYSKANCWKEAQDLYSRMK 636
Query: 121 ----------TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
+N + N++ G + K V+ +FD L + Y ++
Sbjct: 637 NMDGGPDIVASNSMLNLYANLGMVTK-----------VKEIFDCLRRNNQADDVS-YTSM 684
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +GL + RV + GL + +N ++
Sbjct: 685 ISLYKNMGLLNESVRVAHDLQNSGLLSDCASYNAVM 720
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 50/256 (19%), Positives = 97/256 (37%), Gaps = 46/256 (17%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K+ + M + GVA ++ +FN +I F G +EA + M +P+ +T
Sbjct: 274 AGKLKDAMDMFMGMPDYGVAADTCTFNTLINIFGSCGNVKEAEALFASMIVRGTNPDVKT 333
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-------- 112
+++++ G V+ + + I G+ + Y ++L V + +A
Sbjct: 334 FNVMMTLFASKGDVEGVLKHYYHIGKMGLSADTVSYGIVLRVLCERKMVHEAEDVIVGIM 393
Query: 113 --------------------YGLLDEMHT-----NRISNIHQVTGQMIKGEFDDESNWQM 147
GLLD+ + R + T I F + W+
Sbjct: 394 RSGTCVPEQPLPVVMKMYIDQGLLDKANAFFDRHCRGDEVSSKTFAAIMDAFAERGFWEE 453
Query: 148 VEYVFDKLNCEGYGL---GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
E+VF G+ G+ YN +++A +R + +L+ + G+ P+ N
Sbjct: 454 AEHVF----YSHRGVRRRGIVEYNVMVKAYGAAKRYDRVSPLLEHMNESGISPDECTFNS 509
Query: 205 LVWSVDVHRMWEGGAY 220
L+ +M+ G Y
Sbjct: 510 LI------QMFATGGY 519
>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 108/232 (46%), Gaps = 19/232 (8%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A RM E+G + +++ +I+ + + G+++EAI Y +++ P++ T ++ ++
Sbjct: 99 AWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTMVRLF 158
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG + + F+E+K SG+ P + Y +++A ++ R A + +EM + +
Sbjct: 159 GRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGVKP-N 217
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT + + N VF +L +G + YNA+L+ GL A + L
Sbjct: 218 AVTLSTVMETYSRCGNVMEGLEVFQRLR-QGVACDVIVYNAVLKMCREAGLASEAEQYLR 276
Query: 189 EATKRGLFPELFRHNKLV-------WSVDVHR----MWEGG------AYTAI 223
E T+ G P + + ++ +V+ HR M E G AYT++
Sbjct: 277 EMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQMVEAGYQIDVMAYTSL 328
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 108/255 (42%), Gaps = 31/255 (12%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GVA + +NAV++ R+ G EA + EM + PN+ T ++SVY G+ E+
Sbjct: 247 GVACDVIVYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEA 306
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK- 136
F ++ +G VM Y LL Y + ++ +LDEM + + ++ ++
Sbjct: 307 HRTFSQMVEAGYQIDVMAYTSLLQAYGNAKEYNKVQEILDEMTSVNCAPDERLCCVILNL 366
Query: 137 ---GEFDDE-----SNWQMVEYVFDKLNCEGY--GLGMR--------------------F 166
+ D+E S +M D + + + L +R
Sbjct: 367 LDSCDTDEELGILRSCLRMCSSTMDTIVGQIFEENLVLRELRGELQSLLSDITEEAHKPI 426
Query: 167 YNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
N+L++ W G R + ++L G++ L + +WS+ + + G A+ A+ W
Sbjct: 427 CNSLMQLSWHKGDRNHSFQLLSLFRVLGVYTGLQTKSPTMWSLHLRSLSTGAAHCALLSW 486
Query: 227 LNKMYEMFMMGEDLP 241
L+ + G++LP
Sbjct: 487 LSSVRYAIKEGQELP 501
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 2/198 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + +I M SGV ++ +N +I + GR A+K + EME+ PN T
Sbjct: 161 AGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGVKPNAVT 220
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
L V+ Y G V E E FQ ++ G+ V+ Y +L + ++ +A L EM
Sbjct: 221 LSTVMETYSRCGNVMEGLEVFQRLR-QGVACDVIVYNAVLKMCREAGLASEAEQYLREM- 278
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T + T + + + + F ++ GY + + Y +LL+A
Sbjct: 279 TESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQMVEAGYQIDVMAYTSLLQAYGNAKEY 338
Query: 181 ERAARVLDEATKRGLFPE 198
+ +LDE T P+
Sbjct: 339 NKVQEILDEMTSVNCAPD 356
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 1/183 (0%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74
+E + N ++N +++ R+G ++E + + +M P+ T ++S
Sbjct: 35 AEHSSSLNIYTYNVMLKVLRRGRQWEFSQQIAEDMANADVRPDNITYSTLISCANRCNYQ 94
Query: 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134
D + F + +G +P V+ Y ++ VY K ++D+A L + + G M
Sbjct: 95 DAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTM 154
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
++ F + +F+++ G YN ++ L G A +V +E + G
Sbjct: 155 VR-LFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREG 213
Query: 195 LFP 197
+ P
Sbjct: 214 VKP 216
>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
Length = 447
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 6/179 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G+ N ++N +++ F + G+ A + ++EM+K C+ + T V+ +
Sbjct: 211 VLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFG 270
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
AG + ++ F E+ G+LPSV Y ++ V K + ++A + +EM N
Sbjct: 271 VAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVT 330
Query: 125 SNIHQVTGQMIKGEFD-DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ + G GEF E Q +E + N + Y + +R+Y+ E LGL E+
Sbjct: 331 TYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEK 389
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 2/193 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G ++ SFN +++ + R E+A + + + + R + T +L+ +C
Sbjct: 146 MHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL-RGRFSVDTVTYNVILNGWCLIKR 204
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ E +E+ GI P++ Y +L + ++ + A+ EM R I VT
Sbjct: 205 TPKTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEM-KKRDCEIDVVTYT 263
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ F + VFD++ EG + YNA+++ L E A + +E +R
Sbjct: 264 TVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR 323
Query: 194 GLFPELFRHNKLV 206
G P + +N L+
Sbjct: 324 GYEPNVTTYNVLI 336
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 90/206 (43%), Gaps = 6/206 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ +++ RM + + +F V E + G+ ++A+K ++ M + C + +
Sbjct: 100 LHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFN 159
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+L V C + V+++ E F+ ++ + +V Y ++L + R +L EM
Sbjct: 160 TILDVLCKSKRVEKAYELFRALRGRFSVDTV-TYNVILNGWCLIKRTPKTLEVLKEMVER 218
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFD--KLNCEGYGLGMRFYNALLEALWCLGLR 180
I+ M+KG F E+ + K +CE + + Y ++ G
Sbjct: 219 GINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCE---IDVVTYTTVVHGFGVAGEI 275
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+RA V DE + G+ P + +N ++
Sbjct: 276 KRARNVFDEMIREGVLPSVATYNAMI 301
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K + + M GV + ++NA+I+ + E A+ + EM + +PN T
Sbjct: 272 AGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTT 331
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ AG +E Q +++ G P+ Y M++ Y++ + + A GL ++M
Sbjct: 332 YNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM 390
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G N ++N +I G F + ME C+PN +T ++ Y
Sbjct: 320 MVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSE 379
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111
V+++ F+++ S LP++ Y +L++ R +D
Sbjct: 380 VEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSED 417
>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 579
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + S M G+ N +F+ +++A + + ++A+ M K PN T
Sbjct: 160 GKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVT 219
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ YC V+++ F + G+ P+V CY +++ K R D+A L EMH
Sbjct: 220 YGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMH 279
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I N VT ++ + D++ G + + YN+LL AL
Sbjct: 280 WKKI-NPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHL 338
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
++A ++ E +G+ P + + L+
Sbjct: 339 DQAITLVKEIKDQGIQPNVCTYTTLI 364
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 1/200 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I + M + GV N +N +I + R +EA+ + EM + +P+ T ++ C
Sbjct: 239 IFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLC 298
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + S E E++S G ++ Y LL K++ D A L+ E+ I
Sbjct: 299 KLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVC 358
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G D + +F ++ EGY + + YN ++ L GL + A +L
Sbjct: 359 TYTTLIDGLCKD-GRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSR 417
Query: 190 ATKRGLFPELFRHNKLVWSV 209
P+ + +++++
Sbjct: 418 MEDNACIPDAVSYETIIYAL 437
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 3/195 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G N ++N +I G EEA++ +M++ C PN T ++ + +G
Sbjct: 340 MIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGD 399
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ + E + + S G P+V+ Y ++ V K++ +D A L+++M +
Sbjct: 400 LVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNT 459
Query: 134 MIKGEF-DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
IKG + W M + +++ G + YN LL+AL+ + E A + E
Sbjct: 460 FIKGLCGNGRVEWAM--KLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEA 517
Query: 193 RGLFPELFRHNKLVW 207
R L P L +N +++
Sbjct: 518 RNLQPNLVTYNTVLY 532
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 108/252 (42%), Gaps = 39/252 (15%)
Query: 3 LYKEC-----QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN 57
L +EC Q IL +M G+ D F +I +++ G E+A+K + + + C P
Sbjct: 84 LGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPT 143
Query: 58 ERTLEAVLSVYCFAGLVDESKEQ-----FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
R +L L+ E+K Q + +K G++P+V Y +LL K++R D A
Sbjct: 144 VRIYNHLLD-----ALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAA 198
Query: 113 YGLLDEMHT-----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFY 167
+ L EM + ++ V+ G+ DD + + Y
Sbjct: 199 HKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELA-----------GRFKPSVPVY 247
Query: 168 NALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227
NAL++ + G E A ++L E G+ P + ++ ++ S+ V G A +++
Sbjct: 248 NALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCV----SGNVELAFALF- 302
Query: 228 NKMYEMFMMGED 239
+MF+ G D
Sbjct: 303 ---AQMFLRGCD 311
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 5/200 (2%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ ++M G N +F +I+ G+ EA+ + M + C+PN ++
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--HTNRISN 126
C G ++E+ + +++ SG LP+V Y +L+ +AKS A + M H R N
Sbjct: 360 CSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCR-PN 418
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ VT + S + + +K+ EG +N ++ L G E A ++
Sbjct: 419 V--VTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKL 476
Query: 187 LDEATKRGLFPELFRHNKLV 206
L+ G P + +N+L+
Sbjct: 477 LERMQGHGCLPNITTYNELL 496
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 18/194 (9%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM G N ++N +++A + ++EEA + E+E PN T VL +
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFS 535
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD------EMHTNR 123
AG++ E+ + F + G P + Y ++ Y K + A L++ E H +
Sbjct: 536 RAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDI 595
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I+ + G NW +E DK +G +NAL+ +
Sbjct: 596 ITYTSLIWG---------ACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGH 646
Query: 181 ERAARVLDEATKRG 194
+LD+ ++G
Sbjct: 647 MGPIHILDDILRKG 660
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 55/114 (48%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
++ + +++ +M+ G N+ +FN I+ GR E A+K M+ C PN T
Sbjct: 434 MFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYN 493
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+L +E+ FQEI++ + P+++ Y +L ++++ +A L
Sbjct: 494 ELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLF 547
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/241 (17%), Positives = 98/241 (40%), Gaps = 14/241 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M ++GV N S++ +I + G E A + +M CD N T ++
Sbjct: 266 LLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCF 325
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-TNRISNIH 128
G + E+ + ++ + G P+V+ Y L+ + ++A + D+M + + N+
Sbjct: 326 MRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNV- 384
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
T ++ F + ++++ G + Y +++ L + ++A +++
Sbjct: 385 -TTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVE 443
Query: 189 EATKRGLFPELFRHNKLV----------WSVD-VHRMWEGGAYTAISVWLNKMYEMFMMG 237
+ T G P N + W++ + RM G I+ + + +F M
Sbjct: 444 KMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMN 503
Query: 238 E 238
+
Sbjct: 504 K 504
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 1/193 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K + I M ESGV+ N ++N +I F G E + + EME+ C PN T +
Sbjct: 185 KIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTI 244
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ YC + E+ + + + G+ P+++ Y +++ + + + +L+EM R
Sbjct: 245 IDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRY 304
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+I G + + N+ + ++ G + Y L+ ++ G RA
Sbjct: 305 VPDRVTFNTLING-YCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAM 363
Query: 185 RVLDEATKRGLFP 197
LD+ RGL P
Sbjct: 364 EFLDQMRDRGLHP 376
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 93/196 (47%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L +M + G+ N ++ +I+ F Q G ++A + EM + P T A+++ +C
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G ++++ QE+ G +P V+ Y +++ + ++ + A+ L EM IS
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+I+G ++ + +F ++ G Y +L+ A G ++A R+ DE
Sbjct: 486 YSSLIQGLCKQRRLGEVCD-LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEM 544
Query: 191 TKRGLFPELFRHNKLV 206
++G P++ +N L+
Sbjct: 545 IQKGFSPDIVTYNVLI 560
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 36/205 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE IL MS+ + +FN +I + G F +A+ + EM K PN T
Sbjct: 287 GQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTY 346
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C AG ++ + E +++ G+ P+ Y L+ +++ AY ++ EM
Sbjct: 347 TTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVE 406
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N G+ + YNAL+ LG E
Sbjct: 407 N------------------------------------GFTPTIITYNALINGHCILGRME 430
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A+ +L E +RG P++ ++ ++
Sbjct: 431 DASGLLQEMIERGFIPDVVSYSTII 455
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 87/199 (43%), Gaps = 26/199 (13%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G++ + +++++I+ + R E + EM + P+E T ++++ YC G
Sbjct: 474 MVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGD 533
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+D++ E+ G P ++ Y +L+ + K +R +A LL ++
Sbjct: 534 LDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL-------------- 579
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ES + Y NC L + AL++ GL A RVL+ ++
Sbjct: 580 -----LYEESVPNEITYNTLIDNCN--NLEFKSALALMKGFCMKGLMNEADRVLESMLQK 632
Query: 194 GLFPELFRHNKLVWSVDVH 212
G ++ N+ V++V +H
Sbjct: 633 G-----YKLNEEVYNVIIH 646
>gi|255661144|gb|ACU25741.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 426
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQ 133
+ + +I QV Q
Sbjct: 283 SGV-DIDQVLYQ 293
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|255661130|gb|ACU25734.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 426
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ D N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIDQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y ++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHVKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQ 133
+ + +I QV Q
Sbjct: 283 SGV-DIDQVLYQ 293
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKA---YVEMEKVRCDPNER 59
L+ E + M + +N ++N+++ + G+ E +KA EM+ +PN
Sbjct: 199 LFGEAIHLFRLMQRKNIDQNVVTYNSMMMIY---GKTLEHVKANNLIQEMQNRGIEPNSI 255
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T ++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 256 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL 315
Query: 120 HTNRISNI 127
R NI
Sbjct: 316 --KRPDNI 321
>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
herrerae]
Length = 433
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E +A++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 97 LFREARALISEMKTAGVMPNTASYSTLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCN 156
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 157 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 216
Query: 123 RI 124
I
Sbjct: 217 NI 218
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 62/118 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + +++ P+
Sbjct: 26 GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAY 85
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 86 NAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYVENKKFIEALSVFSEM 143
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 166 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 225
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 226 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 285
Query: 122 NRISNIHQVTGQ 133
+ + I QV Q
Sbjct: 286 SGVE-IDQVLYQ 296
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 202 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 261
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT- 121
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+ +
Sbjct: 262 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSP 321
Query: 122 ---NRISNIHQVTG 132
R + IH + G
Sbjct: 322 DNIPRDTAIHILAG 335
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ ++ M G+ NS +++ +I + + G+ + A + ++ + ++ +
Sbjct: 238 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQT 297
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-YGLLDEMHTN 122
++ Y AGLV +K E+KS +P +L A + R ++A Y +
Sbjct: 298 MIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHIL----AGAGRIEEATYVFRQAIDAG 353
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160
+ +I V +MI F + V VFDK+ GY
Sbjct: 354 EVKDI-TVFERMIH-LFSKYKKYANVVEVFDKMRGLGY 389
>gi|255661170|gb|ACU25754.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 426
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ ++ M G+ NS +++ +I + + G+ + A + ++ D ++ +
Sbjct: 235 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQT 294
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE-MHTN 122
++ Y AGLV +K E+K +P + +L A + R ++A + + +
Sbjct: 295 MIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHIL----AGAGRIEEATWVFRQAIDAG 350
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160
+ +I V +MI F + V VFDK+ GY
Sbjct: 351 EVKDI-TVFERMIH-LFSKYKKYGNVVVVFDKMRGLGY 386
>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
Length = 521
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 70/118 (59%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY+E + ++ E + ++NA++EA+ QGG A++ + M++ C P+ +
Sbjct: 258 GLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSH 317
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ Y AGL +++++ F+ ++S+G P++ +LL+ YA++ R ++A L+ M
Sbjct: 318 NILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAM 375
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 3/203 (1%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ + +RM E+ N ++F +I +R G FE+A + +V+M+K P
Sbjct: 121 EDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAEELFVQMQKRGYSPGPLACNTF 180
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L V A ++ F++++ P++ Y ++ +Y K+ A L M
Sbjct: 181 LHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMC 240
Query: 125 -SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
NI T M F + ++ E FDKL Y YNAL+EA G A
Sbjct: 241 PPNICTFTALM--NAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGA 298
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+ + G FP+ HN L+
Sbjct: 299 LEIFQTMQRNGCFPDTVSHNILI 321
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M +G ++ S N +I A+ + G +E+A K + M+ PN ++ +LS Y
Sbjct: 301 IFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYA 360
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
AG V+E++E ++ G P + Y L+ Y S R +D LL +M
Sbjct: 361 RAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKM 410
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFE--EAIKA-YVEMEKVRCDPN 57
G +E + ++S M G ++ +N++I A+ GR E EA+ A V+ + P+
Sbjct: 362 AGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPD 421
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
T ++ VY AG + ++E FQ + ++P + L+ YAK + +L
Sbjct: 422 IGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSILK 481
Query: 118 EM 119
+M
Sbjct: 482 KM 483
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 16/208 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M E G++ + ++N++I+ + + G EE + EM+ V C P+ T +++ YC
Sbjct: 252 LFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYC 311
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRI 124
+ + E F E+K++G+ P+V+ Y L+ + K A LL +M N
Sbjct: 312 KFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEF 371
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + G + W+++ D L G L + Y ALL+ L G A
Sbjct: 372 TYTSLIDANCKAGNLTEA--WKLLN---DMLQA-GVKLNIVTYTALLDGLCKAGRMIEAE 425
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVH 212
V K G+ P N+ V++ VH
Sbjct: 426 EVFRSMLKDGISP-----NQQVYTALVH 448
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 84/194 (43%), Gaps = 1/194 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + IL M G++ N +I+A+ + G+ +A+ + EM+ V + T +
Sbjct: 492 EETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVL 551
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ C AG+V+ + + F + S G+ P+V Y L+ +N + A L DEM +
Sbjct: 552 IDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGM 611
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G N Q + ++ + Y +L+ G +A
Sbjct: 612 TPDITAFTALIDGNL-KHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQAR 670
Query: 185 RVLDEATKRGLFPE 198
+ +E ++G+ PE
Sbjct: 671 KFFNEMIEKGILPE 684
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + +L M +G+ N ++ ++I+A + G EA K +M + N T
Sbjct: 349 GMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTY 408
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+L C AG + E++E F+ + GI P+ Y L+ Y K+ R +DA +L +M
Sbjct: 409 TALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTE 468
Query: 122 NRISNIHQVTGQMIKGE 138
I + G +I G
Sbjct: 469 CNIKPDLILYGSIIWGH 485
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
S M +G+ N +++ +I+AF + G + AIK +M + PNE T +++ C
Sbjct: 323 FSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCK 382
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
AG + E+ + ++ +G+ +++ Y LL K+ R +A + M + IS QV
Sbjct: 383 AGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQV 442
Query: 131 TGQMIKGEFDDE 142
++ G E
Sbjct: 443 YTALVHGYIKAE 454
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 85/218 (38%), Gaps = 52/218 (23%)
Query: 5 KECQAILSRMSESG----------------VARNSDSFNAVIEAFRQGGRFEEAIKAYVE 48
+ C +L R+S+SG +A + ++N +I+ + G E + + +V+
Sbjct: 196 RSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQ 255
Query: 49 MEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108
M ++ P+ T +++ Y G ++E F E+K G +P ++ Y L+ Y K +
Sbjct: 256 MREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK 315
Query: 109 WDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYN 168
A+ EM N G + Y+
Sbjct: 316 MPRAFEYFSEMKNN------------------------------------GLKPNVVTYS 339
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L++A G+ + A ++L + + GL P F + L+
Sbjct: 340 TLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLI 377
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 1/196 (0%)
Query: 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
S F+ + F + G EEA + + M R P R+ +L +G ++ F
Sbjct: 160 SGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFN 219
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDE 142
++ +GI PSV Y +++ K +++ L +M +S +I G +
Sbjct: 220 DMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDG-YGKV 278
Query: 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
+ + V +F+++ G + YN L+ RA E GL P + +
Sbjct: 279 GSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTY 338
Query: 203 NKLVWSVDVHRMWEGG 218
+ L+ + M +G
Sbjct: 339 STLIDAFCKEGMMQGA 354
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M G+ + +F A+I+ + G +EA+ M ++ + + +++S
Sbjct: 600 KKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSG 659
Query: 68 YCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ G + ++++ F E+ GILP V+C C LL Y K + D+A L +EM
Sbjct: 660 FSQCGELHQARKFFNEMIEKGILPEEVLCIC-LLREYYKRGQLDEAIELKNEM 711
>gi|255661134|gb|ACU25736.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
gi|255661138|gb|ACU25738.1| pentatricopeptide repeat-containing protein [Verbena halei]
gi|255661140|gb|ACU25739.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 426
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 624
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 65/119 (54%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + MS GV N+ ++N +I A+ + G+ +EA K ME DP+ T
Sbjct: 483 GNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTY 542
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ C A VDE+ F E+ G+ + + Y ++++ +K+ + D+A+GL DEM
Sbjct: 543 TSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMK 601
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 11/176 (6%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y E + L RM E GV ++ S+ +I+ + + G EEA + +VEM PN T
Sbjct: 450 YDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNV 509
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---- 119
++ YC G + E+++ ++++G+ P Y L+ ++ D+A L EM
Sbjct: 510 MIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKG 569
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
N ++ ++G G+ D+ ++D++ +GY + + Y AL+ ++
Sbjct: 570 LDQNSVTYTVMISGLSKAGKSDEAFG------LYDEMKRKGYTIDNKVYTALIGSM 619
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 96/229 (41%), Gaps = 6/229 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+++E + M + G++ + S + A ++ R + ++ + M +L
Sbjct: 168 GMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYSL 227
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ C G V++SK+ +E GI P Y ++ Y K + G+L M
Sbjct: 228 TIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKK 287
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + ++VT ++ E +FD++ G + Y +L+ G +
Sbjct: 288 DGVV-YNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMK 346
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
RA + DE T++GL P + + L+ V + G A + +N+M
Sbjct: 347 RAFLLFDELTEKGLSPSSYTYGALIDGV-----CKVGEMGAAEILMNEM 390
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/238 (18%), Positives = 96/238 (40%), Gaps = 12/238 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + ++ S G+ + ++N +I A+ + F M+K N+ T
Sbjct: 238 GEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTY 297
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + G + ++++ F E++ GI V Y L++ + A+ L DE+
Sbjct: 298 TLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTE 357
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+S G +I G E + +++ +G + +N L++ G+ +
Sbjct: 358 KGLSPSSYTYGALIDG-VCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVD 416
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAISVWLN 228
A+ + D ++G ++F N + + + RM EGG + + N
Sbjct: 417 EASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTN 474
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 36/236 (15%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ +L M + GV N ++ ++E + G+ +A K + EM + + + +++S
Sbjct: 279 EGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISW 338
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G + + F E+ G+ PS Y L+ K A L++EM + + NI
Sbjct: 339 NCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGV-NI 397
Query: 128 HQVT------GQMIKGEFDDESN-WQMVE---YVFDKLNCE------------------- 158
QV G KG D+ S + ++E + D C
Sbjct: 398 TQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWL 457
Query: 159 ------GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
G L Y L++ G E A R+ E + +G+ P +N ++++
Sbjct: 458 FRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYA 513
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/205 (18%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K + ++E G++ +S ++ A+I+ + G A EM+ + +
Sbjct: 343 GNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVF 402
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC G+VDE+ + ++ G V + + + + R+D+A L M
Sbjct: 403 NTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMME 462
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + V+ + + E N + + +F +++ +G YN ++ A G +
Sbjct: 463 GGVK-LSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIK 521
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++ G+ P+ + + L+
Sbjct: 522 EARKLRANMEANGMDPDSYTYTSLI 546
>gi|255661162|gb|ACU25750.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 426
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|242074342|ref|XP_002447107.1| hypothetical protein SORBIDRAFT_06g028710 [Sorghum bicolor]
gi|241938290|gb|EES11435.1| hypothetical protein SORBIDRAFT_06g028710 [Sorghum bicolor]
Length = 363
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 11/211 (5%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y+ I S GV ++ SFN +++ Q +F+EAI EM K C PN T
Sbjct: 158 YEVVHEIYSSAPRLGVTLDTCSFNILVKGLCQCSKFDEAISLLHEMPKQGCQPNVATYST 217
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+ C LVD++ E F+ ++ I + Y +L++ + R +A+ L M +
Sbjct: 218 FMHFLCQRSLVDKAFELFERMRKQDIAADTVVYNILISGLCREERVSEAFDLFKSMTSEG 277
Query: 124 I---SNIHQV--TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
S +QV G + G+F + + + ++ EG + Y L++ L
Sbjct: 278 CYPNSGTYQVLLDGLISLGKFFEAKS------LVSTMSTEGVRPSFQSYKLLIDGLCSED 331
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ A VL + +G P + KL+ S+
Sbjct: 332 CVDDAHLVLKQMVGQGFVPRMGTWTKLLTSI 362
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 92/207 (44%), Gaps = 7/207 (3%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM------EKVRCDPNER 59
E + RM + G + ++ +I+ G A+K + EM ++ C PN
Sbjct: 157 EATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVI 216
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T ++ C G DE+K+ F+E+K+ G++PS++ Y L+ + + +W+++ LLDEM
Sbjct: 217 TYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEM 276
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ VT ++ E + + + G + YN+L+E +G
Sbjct: 277 LDQGLQP-DMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGD 335
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
A + +G P++ +N L+
Sbjct: 336 LNSARELFVSMPSKGCEPDVISYNVLI 362
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 96/198 (48%), Gaps = 11/198 (5%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G + S+N +I + + + EEA+K Y EM V PN T +++L AG
Sbjct: 346 MPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGK 405
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR----ISNIHQ 129
VD++K+ F +K+ GI + Y + L K++ +A L E+ ++ I N++
Sbjct: 406 VDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNC 465
Query: 130 VTGQMIK-GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ + K G+ E+ W++ F+KL+ EG+ + Y ++ G ++A ++
Sbjct: 466 LIDGLCKAGKL--ETAWEL----FEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQ 519
Query: 189 EATKRGLFPELFRHNKLV 206
+ G P++ +N L+
Sbjct: 520 KMEANGCTPDIITYNTLM 537
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 108/264 (40%), Gaps = 39/264 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++E + +L M + G+ + +FN +I+ + G+ EA K M + P+ T
Sbjct: 263 AGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVT 322
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+++ +C G ++ ++E F + S G P V+ Y +L+ Y+K+ + ++A L +EM
Sbjct: 323 YNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEML 382
Query: 120 ----HTNRISNIHQVTGQMIKGEFDDESNWQMV--------------------------- 148
N I+ + G + G+ DD V
Sbjct: 383 LVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLF 442
Query: 149 --EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+F +L + L + N L++ L G E A + ++ + G P N +
Sbjct: 443 EAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEP-----NVVT 497
Query: 207 WSVDVHRMWEGGAYTAISVWLNKM 230
+++ +H G +V + KM
Sbjct: 498 YTIMIHGFCREGQVDKANVLIQKM 521
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 7/209 (3%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y + ++ ++M SG++ + + N ++ R E A+ + + PN T
Sbjct: 85 YSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNT 144
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ C + E+ F ++ G P V+ Y L+ + + A L EM N
Sbjct: 145 LIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEM-LND 203
Query: 124 IS------NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
IS + +T +I + +F+++ +G + YN+L+ C
Sbjct: 204 ISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCA 263
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G E + R+LDE +GL P++ N L+
Sbjct: 264 GKWEESKRLLDEMLDQGLQPDMVTFNVLI 292
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 58/120 (48%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + + S ++ N +I+ + G+ E A + + ++ +PN T ++
Sbjct: 443 EAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMI 502
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+C G VD++ Q+++++G P ++ Y L+ + +SN+ ++ LL M +S
Sbjct: 503 HGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVS 562
>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
Length = 521
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 70/118 (59%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY+E + ++ E + ++NA++EA+ QGG A++ + M++ C P+ +
Sbjct: 258 GLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSH 317
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ Y AGL +++++ F+ ++S+G P++ +LL+ YA++ R ++A L+ M
Sbjct: 318 NILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAM 375
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 3/203 (1%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ + +RM E+ N ++F +I +R G FE+A + +V+M+K P
Sbjct: 121 EDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAEELFVQMQKRGYSPGPLACNTF 180
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L V A ++ F++++ P++ Y ++ +Y K+ A L M
Sbjct: 181 LHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMC 240
Query: 125 -SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
NI T M F + ++ E FDKL Y YNAL+EA G A
Sbjct: 241 PPNICTFTALM--NAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGA 298
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+ + G FP+ HN L+
Sbjct: 299 LEIFQTMQRNGCFPDTVSHNILI 321
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M +G ++ S N +I A+ + G +E+A K + M+ PN ++ +LS Y
Sbjct: 301 IFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYA 360
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
AG V+E++E ++ G P + Y L+ Y S R +D LL +M
Sbjct: 361 RAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVSGRHEDMEALLAKM 410
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFE--EAIKA-YVEMEKVRCDPN 57
G +E + ++S M G ++ +NA+I A+ GR E EA+ A V+ + P+
Sbjct: 362 AGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVSGRHEDMEALLAKMVKSSSKQTKPD 421
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
T ++ VY AG + +++E FQ + ++P + L+ YAK + +L
Sbjct: 422 IGTYNTLIQVYAQAGFIPKAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSILK 481
Query: 118 EM 119
+M
Sbjct: 482 KM 483
>gi|255661160|gb|ACU25749.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 426
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D++ FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 72/158 (45%), Gaps = 7/158 (4%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ ++ M G+ NS +++ +I + + G+ ++A + ++ D ++ +
Sbjct: 235 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQT 294
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE-MHTN 122
++ Y AGLV +K E+K +P + +L A + R ++A + + +
Sbjct: 295 MIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHIL----AGAGRIEEATWVFRQAIDAG 350
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160
+ +I V +MI F + V VFDK+ GY
Sbjct: 351 EVKDI-TVFERMIH-LFSKYKKYGNVVEVFDKMRGLGY 386
>gi|22093673|dbj|BAC06967.1| crp1-like protein [Oryza sativa Japonica Group]
gi|50510048|dbj|BAD30673.1| crp1-like protein [Oryza sativa Japonica Group]
Length = 912
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 90/185 (48%), Gaps = 1/185 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y +L M+ESG++ + +FN++++ F GG + A K +M+ P T A
Sbjct: 489 YDRVSPLLEHMNESGISPDECTFNSLVQMFATGGYPQRAKKLLGKMKYAGFKPKCETYAA 548
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ LV E+ + E+K+SG+ P+V+ Y +L+ +A++ + ++A + M +
Sbjct: 549 AITTLSRNYLVSEAIYLYNEMKASGVEPNVVVYGVLIDTFAETGQLEEALHYNNLMEESG 608
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I+ V +IK + + W+ + ++ ++ G + N++L LG+ +
Sbjct: 609 IAPNQIVLTSLIKA-YSKANCWKEAQDLYSRMKSMDGGPDIVASNSMLNLYANLGMVTKV 667
Query: 184 ARVLD 188
+ D
Sbjct: 668 KEIFD 672
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 88/216 (40%), Gaps = 22/216 (10%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + +L +M +G +++ A I + EAI Y EM+ +PN
Sbjct: 521 GGYPQRAKKLLGKMKYAGFKPKCETYAAAITTLSRNYLVSEAIYLYNEMKASGVEPNVVV 580
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ + G ++E+ ++ SGI P+ + L+ Y+K+N W +A L M
Sbjct: 581 YGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIVLTSLIKAYSKANCWKEAQDLYSRMK 640
Query: 121 ----------TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
+N + N++ G + K V+ +FD L + Y ++
Sbjct: 641 SMDGGPDIVASNSMLNLYANLGMVTK-----------VKEIFDCLRRNNQADDVS-YTSM 688
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +GL + RV + GL + +N ++
Sbjct: 689 ISLYKNMGLLNESVRVAHDLQNSGLLSDCASYNAVM 724
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 80/187 (42%), Gaps = 2/187 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K+ + M + GVA ++ +FN +I F G +EA + M +P+ +T
Sbjct: 278 AGKLKDAMDMFMGMPDYGVAADTCTFNTLINIFGSCGNVKEAEALFASMIVRGTNPDVKT 337
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++++ G V+ + + I G+ + Y ++L V + +A ++ +
Sbjct: 338 FNVMMTLFASKGDVEGVLKHYYHIGKMGLSADTVSYGIVLRVLCERKMVHEAEDVIVGIM 397
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ Q ++K + D+ FD+ +C G + + + A+++A GL
Sbjct: 398 RSGTCVPEQSLPVVMK-MYIDQGLLDKANAFFDR-HCRGDEVSSKTFAAIMDAFAERGLW 455
Query: 181 ERAARVL 187
E A V
Sbjct: 456 EEAEHVF 462
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVE-MEKVRCDPNERT 60
GL +E + RM G+ + +F+A++ A + R E +K+ +E ME + PN T
Sbjct: 208 GLCREALEMYRRMVLEGLKPSLKTFSALMVATGKR-RDTETVKSLLEEMESLGLKPNIYT 266
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ V AG +DE+ + ++ G P V+ Y +L+ + + DDA L +M
Sbjct: 267 YTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMK 326
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +VT + +F D + V+ + ++ +GY + + L+ AL G
Sbjct: 327 ASS-HKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNI 385
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A +LD K+G+ P L +N L+
Sbjct: 386 DEAFHLLDVMRKQGVLPNLHTYNTLI 411
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 10/221 (4%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +++ + GR EEA + + EM C PN +++ + G V+ + E F+ +
Sbjct: 897 TYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRM 956
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
GI P + Y L+ ++ R DDA +++ + MI G
Sbjct: 957 VREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDG-LGRSHR 1015
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ ++D++ G + YN+L+ L G+ E+A ++ +E GL P +F +N
Sbjct: 1016 IEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNA 1075
Query: 205 LVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLAT 245
L+ + G + +A +V Y+ M+G P T
Sbjct: 1076 LIRGYSM----SGNSDSAYAV-----YKRMMVGGCSPNTGT 1107
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 67/121 (55%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + I +R+ +G+A +S ++N +++ + + G+ +EAI+ +M + +C+P+ +
Sbjct: 488 GRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVI 547
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ AG VDE+ + F +K + P+V+ Y L+A K + A L M
Sbjct: 548 NSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTG 607
Query: 122 N 122
N
Sbjct: 608 N 608
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 9/201 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + M GV + ++ I+ + + GR ++A++ + +M+ PN A L
Sbjct: 426 LFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLA 485
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR----IS 125
G + E+K F +KS+G+ P + Y M++ Y+K+ + D+A LL +M N+ I
Sbjct: 486 EMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDII 545
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
I+ + + K DE+ W+M F +L + YN L+ L G +RA
Sbjct: 546 VINSLINTLYKAGRVDEA-WKM----FCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAME 600
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ T G P N ++
Sbjct: 601 LFASMTGNGCPPNTITFNTIL 621
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 95/214 (44%), Gaps = 11/214 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E I+ RM + G + ++ +I+A G+ ++A++ +V+M+ P+ T
Sbjct: 277 AGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVT 336
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L + G + KE + E+++ G P V+ + +L+ K+ D+A+ LLD M
Sbjct: 337 YITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMR 396
Query: 121 TNRI-SNIHQ----VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
+ N+H ++G + DD + +F+ + G Y ++
Sbjct: 397 KQGVLPNLHTYNTLISGLLRVNRLDDALD------LFNNMETLGVVPTAYTYILFIDFYG 450
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
G ++A ++ RG+ P + N ++S+
Sbjct: 451 KSGRSDKALETFEKMKIRGIAPNIVACNASLYSL 484
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 11/220 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +M S N+ + N +I + ++A+ + ++ P T
Sbjct: 839 GKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTY 898
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L +G ++E+KE F+E+ G P+ Y +L+ + K+ + A L M
Sbjct: 899 GPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVR 958
Query: 122 NRISNIHQVTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
I + ++ G DD ++ F+KL G L YN +++ L
Sbjct: 959 EGIRPDLKSYTSLVGCLCEAGRVDDALHY------FEKLKQTGLYLDSIAYNLMIDGLGR 1012
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E A + DE RG+ P+LF +N L+ ++ V M E
Sbjct: 1013 SHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVE 1052
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 2/200 (1%)
Query: 8 QAILSRMS-ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
Q++ R + E GV +S+N +IE F E A + EM+ C P+ T +L
Sbjct: 774 QSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLD 833
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+ +G ++E E ++++ S P+ + + +++A KSN D A L ++ + S
Sbjct: 834 AHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSP 893
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
G ++ G + + +F+++ G YN L+ G A +
Sbjct: 894 TPCTYGPLLDGLL-KSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACEL 952
Query: 187 LDEATKRGLFPELFRHNKLV 206
+ G+ P+L + LV
Sbjct: 953 FKRMVREGIRPDLKSYTSLV 972
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 60/107 (56%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
++ ++G+ +S ++N +I+ + R EEA+ Y EM+ +P+ T +++ AG
Sbjct: 990 KLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAG 1049
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+V+++ + ++E++ G+ P+V Y L+ Y+ S D AY + M
Sbjct: 1050 MVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRM 1096
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +LS MSE+ + N++I + GR +EA K + ++ ++ P T
Sbjct: 522 AGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVT 581
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ G V + E F + +G P+ + + +L K++ D A +L +M
Sbjct: 582 YNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMT 641
Query: 121 T 121
T
Sbjct: 642 T 642
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 49/119 (41%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + R+ + +A ++N +I + G+ + A++ + M C PN T
Sbjct: 557 AGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTIT 616
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L C VD + + ++ + +P V+ + ++ R DA L +M
Sbjct: 617 FNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQM 675
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Query: 1 GGLYKECQA-----ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
GL KE Q + + M+ +G N+ +FN +++ + + A+K +M + C
Sbjct: 587 AGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCM 646
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
P+ T ++ V ++ F ++K + P + C LL K+ +DA+ +
Sbjct: 647 PDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKM-LTPDCVTLCTLLPGVVKNGLMEDAFKI 705
Query: 116 LDE 118
++
Sbjct: 706 AED 708
>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Cucumis sativus]
Length = 962
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
AI + + G+ + +N +I AF G+ + A+ EM+K R P RT ++ +
Sbjct: 542 AIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGF 601
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G + ++ + F ++ SG +P+V Y L+ + + + A +LDEM +S
Sbjct: 602 ARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNE 661
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G + Y F KL EG L + Y ALL+A G + A V
Sbjct: 662 HTYTTIMHGYASLGDTGKAFTY-FTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTK 720
Query: 189 EATKRGLFPELFRHNKLV 206
E + + + F +N L+
Sbjct: 721 EMSAQNIPRNTFIYNILI 738
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + M SG ++NA+I + + E+A + EM PNE T
Sbjct: 605 GEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTY 664
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G ++ F +++ G+ V Y LL KS R A + EM
Sbjct: 665 TTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSA 724
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I + +I G W+ + + ++ EG + Y + + A G +
Sbjct: 725 QNIPRNTFIYNILIDGWARRGDIWEAAD-LMQQMKREGVQPDIHTYTSFINACSKAGDMQ 783
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
RA + ++E G+ P + + L+
Sbjct: 784 RATKTIEEMKSVGVKPNVKTYTTLI 808
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 58/118 (49%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RN+ +N +I+ + + G EA +M++ P+ T
Sbjct: 710 GRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTY 769
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ ++ AG + + + +E+KS G+ P+V Y L+ +A+++ + A +EM
Sbjct: 770 TSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEM 827
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 1/176 (0%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N+ + +I A+ Q ++A EME+ D ++ Y G D+ F
Sbjct: 415 NAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVF 474
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+ K G+ PSV+ Y L+ +YAK + A + EM I + + +I G F
Sbjct: 475 ERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLING-FLK 533
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+W +F+ L +G + YN ++ A +G +RA + E K+ P
Sbjct: 534 LKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKP 589
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M GV + ++ + I A + G + A K EM+ V PN +T ++
Sbjct: 749 EAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLI 808
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ + A L +++ F+E+K SG+ P Y C++ ++ +++
Sbjct: 809 NGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSLLSRAT 851
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 99/227 (43%), Gaps = 36/227 (15%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ +A++ M E G+ D ++ +++ + G ++ + + ++ +P+ T ++
Sbjct: 434 KAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLI 493
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI- 124
++Y G V ++ E +E++ +GI ++ Y ML+ + K W +A+ + +++ + I
Sbjct: 494 NLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIK 553
Query: 125 ------SNI------------------------HQVTGQ----MIKGEFDDESNWQMVEY 150
+NI H+ T + +I G F + +
Sbjct: 554 PDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHG-FARKGEMKKALD 612
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
VFD + G + YNAL+ L E+A ++LDE T G+ P
Sbjct: 613 VFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSP 659
>gi|255661158|gb|ACU25748.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 426
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
Length = 410
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 101/226 (44%), Gaps = 5/226 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +K + + M GV RN S+N +I + G+ ++A + + M + P+ T
Sbjct: 122 GEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTF 181
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y AG + + F ++K++G+ PSV+ Y L+ + ++ A +M
Sbjct: 182 NLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKE 241
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R++ +VT ++ G F E+ + ++ G + ++ Y LL AL G
Sbjct: 242 RRLAPT-KVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMM 300
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227
A ++ +G+ P ++ +++ EG +Y A+ + +
Sbjct: 301 HARKLFQSMDSKGVKPNNVLYDMMIYGYG----REGSSYKALRLIM 342
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 12/204 (5%)
Query: 9 AILSRMSESG-VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
A+L+R ++SG A + + A++ Q G EA + + M ++ PNE T A++
Sbjct: 23 AVLARGTKSGDAALDVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHG 82
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TN 122
Y G + E++ G+ P++ Y L+ + ++ + A L DEM N
Sbjct: 83 YFVRGQREMGFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRN 142
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+S + G G+ D + +F+ + EG M +N L++ G
Sbjct: 143 VVSYNILIAGLCRHGKLKDAAQ------LFEAMRREGIHPSMVTFNLLIDGYGKAGKMSN 196
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A ++ GL P + +N+L+
Sbjct: 197 ALHFFNQMKAAGLQPSVVTYNELI 220
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 5/209 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + M GV N ++ A+I + G+ E EM + +PN T
Sbjct: 52 GDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALVGEMRRGGVEPNLYTY 111
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G ++ F E+ G++ +V+ Y +L+A + + DA L + M
Sbjct: 112 NCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAM-- 169
Query: 122 NRISNIHQ--VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
R IH VT ++ + + F+++ G + YN L+
Sbjct: 170 -RREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARD 228
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWS 208
A R + +R L P + L+ +
Sbjct: 229 IAHAIRAFSDMKERRLAPTKVTYTILIGA 257
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 52/110 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M ++G+ + S+ ++ A G+ A K + M+ PN + ++ Y
Sbjct: 270 MLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYG 329
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G ++ E++ SG++P+V YC+ + + + +A L+ +M
Sbjct: 330 REGSSYKALRLIMEMRKSGLIPNVASYCLTIRLLCNEGKCQEAEALIGDM 379
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
S M E +A ++ +I AF + + A + EMEK + + ++ +L C
Sbjct: 236 FSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCM 295
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-TNRISNI 127
G + +++ FQ + S G+ P+ + Y M++ Y + A L+ EM + I N+
Sbjct: 296 EGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNV 353
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 99/214 (46%), Gaps = 4/214 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +++RM E+G N ++N+++ + G A+ +M++ + T ++
Sbjct: 153 EAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTII 212
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G +D + F+E+++ GI S++ Y L+ K+ +W+D LL +M + +I
Sbjct: 213 DSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKII 272
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
+ +T ++ F E Q ++ ++ +G YN+L++ +C+ R A
Sbjct: 273 P-NVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDG-YCMQNRLSEAN 330
Query: 185 RVLDEATKRGLFPELFRHNKLVWS-VDVHRMWEG 217
+LD + P++ L+ V R+ EG
Sbjct: 331 NMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEG 364
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 105/231 (45%), Gaps = 6/231 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M G++ N+ ++N++++ + R EA M + C P+ T
Sbjct: 289 GKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTF 348
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC VDE + F++I G++ + + Y +L+ + +S + + A L EM +
Sbjct: 349 TSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVS 408
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ G ++ G D+ + +E +F+ L L + Y ++E + G E
Sbjct: 409 LGVLPDVMTYGILLDGLCDNGKLEKALE-IFEDLQKSKMNLDIVMYTIIIEGMCKGGKVE 467
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
A + +G+ P N + ++V + + + G+ + ++ L KM E
Sbjct: 468 DAWNLFCSLPCKGVKP-----NVMTYTVMISGLCKKGSLSEANILLRKMEE 513
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 90/198 (45%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M G+ + ++N+++ + G++ + ++ +M + PN T ++ V+
Sbjct: 226 SLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVF 285
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G + E+ E ++E+ + GI P+ + Y L+ Y NR +A +LD M N S
Sbjct: 286 VKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDI 345
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+IKG + + ++ +F K++ G Y+ L++ G E A +
Sbjct: 346 VTFTSLIKGYCKVKRVDEGMK-LFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQ 404
Query: 189 EATKRGLFPELFRHNKLV 206
E G+ P++ + L+
Sbjct: 405 EMVSLGVLPDVMTYGILL 422
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 93/209 (44%), Gaps = 6/209 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M+ + N +FN +I+ F + G+ +EA + Y EM PN T +++ YC
Sbjct: 262 LLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYC 321
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ E+ + + P ++ + L+ Y K R D+ L ++ + R +
Sbjct: 322 MQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKI-SKRGLVANT 380
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT ++ F ++ E +F ++ G + Y LL+ L G E+A + ++
Sbjct: 381 VTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFED 440
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
K + ++ +++++ + M +GG
Sbjct: 441 LQKSKMNLDI-----VMYTIIIEGMCKGG 464
>gi|242078445|ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
gi|241940341|gb|EES13486.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
Length = 602
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 82/170 (48%), Gaps = 1/170 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
YKE +I +M +G+ + S++ +I+A+ + R EEA+ + EM P ++
Sbjct: 296 YKEVSSIYDQMQRAGMKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNI 355
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L + +GLVDE+ F+ ++ + P + Y ++ Y ++ + A + +
Sbjct: 356 LLDAFAISGLVDEANTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMNGAEKFFRRIKDDG 415
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
+ V G ++KG + +N + V V++++ +G Y +++A
Sbjct: 416 LKPNVVVYGTLMKG-YSKLNNVEKVMRVYERMRIQGVEPNQTIYTTIMDA 464
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 84/211 (39%), Gaps = 42/211 (19%)
Query: 1 GGLYKECQAILSRM---SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN 57
G YKE +AI + + + F+ +I +++ G + +A K + +M + + +
Sbjct: 223 GDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERKIPLS 282
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
T +++S F E + +++ +G+ P V+ Y +L+ Y K+ R ++A + +
Sbjct: 283 TVTFNSLMS---FETDYKEVSSIYDQMQRAGMKPDVVSYSLLIKAYGKARREEEALAVFE 339
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM L+ G + YN LL+A
Sbjct: 340 EM-----------------------------------LDA-GVRPTRKSYNILLDAFAIS 363
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWS 208
GL + A V + + P+L + +V +
Sbjct: 364 GLVDEANTVFKAMRRHRVEPDLCSYTTMVLA 394
>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 512
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ +L +M + +F+ +++AF + G+ +EA +V M K PN T
Sbjct: 258 GQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTY 317
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ YC V++++ F + G+ P V Y ++++ + K D+A L +EMH
Sbjct: 318 NSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHC 377
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+I +I G + +++ G + YN+LL+AL +
Sbjct: 378 KQIFPDVVTYNSLIDG-LCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVD 436
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A +L + + P + +N L+
Sbjct: 437 KAIELLTKLKDHNIQPSVCTYNILI 461
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N++I+ + GR A+K EM PN T ++L C VD++ E ++
Sbjct: 386 TYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKL 445
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT-GQMIKG 137
K I PSV Y +L+ KS R DA + +++ N NI T MIKG
Sbjct: 446 KDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNG-YNIDVYTYNTMIKG 498
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 84/198 (42%), Gaps = 7/198 (3%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
S M + ++N +I G+ ++AI +M +P T ++ +C
Sbjct: 233 SEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKE 292
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131
G V E+K F + + P+++ Y L+ Y N + A + + M ++
Sbjct: 293 GKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSY 352
Query: 132 GQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
MI G +MV+ +F++++C+ + YN+L++ L G A +++
Sbjct: 353 SIMISG----FCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIG 408
Query: 189 EATKRGLFPELFRHNKLV 206
E RG P + +N L+
Sbjct: 409 EMHDRGQPPNIITYNSLL 426
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 91/197 (46%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +RM + N +F+ +I+ F + G+ EA M K + T +++ YC
Sbjct: 255 LFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYC 314
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
V+++K F + G+ P V Y +++ + K D+A L +EMH +I
Sbjct: 315 LVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVV 374
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ G +E V D+++ G + YN++L+A+ ++A +L +
Sbjct: 375 TYNSLVDGLCKSGRTSCALELV-DEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTK 433
Query: 190 ATKRGLFPELFRHNKLV 206
++G+ P++F + L+
Sbjct: 434 IKEKGIQPDIFTYTVLI 450
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ +++ + M++ GV + S++ +I F + +EA+K + EM + PN T +++
Sbjct: 321 KAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLV 380
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI- 124
C +G + E E+ G +++ Y +L K+N D A LL ++ I
Sbjct: 381 DGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQ 440
Query: 125 SNIHQVT----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I T G G DD + VF+ L +GY + Y +L+ G
Sbjct: 441 PDIFTYTVLINGLCKVGRLDD------AQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFF 494
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ +L + G P N + + + +H ++E
Sbjct: 495 DEGLAMLSKMKDNGCIP-----NAITYEILIHSLFE 525
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 56/111 (50%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L+++ E G+ + ++ +I + GR ++A K + ++ PN T ++++ +
Sbjct: 429 VLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGF 488
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G DE ++K +G +P+ + Y +L+ + + D A LL EM
Sbjct: 489 CNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREM 539
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 3/192 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + M + N ++N++++ + GR A++ EM N T ++L
Sbjct: 356 EAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSIL 415
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C VD++ +IK GI P + Y +L+ K R DDA + +++ S
Sbjct: 416 DAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYS 475
Query: 126 -NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
NI+ T +I G F ++ + + K+ G Y L+ +L+ ++A
Sbjct: 476 PNIYTYTS-LING-FCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAE 533
Query: 185 RVLDEATKRGLF 196
++L E RGL
Sbjct: 534 KLLREMIARGLL 545
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K +L R+ V N ++ +I++ + +A Y EM R P+ T
Sbjct: 177 GETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTY 236
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++S +C G + + + F + S I P+V + +L+ + K + +A +L M
Sbjct: 237 SSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMK 296
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + VT + + + +F+ + G + Y+ ++ + + +
Sbjct: 297 KNVK-LDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVD 355
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++ +E + +FP + +N LV
Sbjct: 356 EAMKLFEEMHCKQIFPNVVTYNSLV 380
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/233 (18%), Positives = 94/233 (40%), Gaps = 10/233 (4%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
++ G + S+ +I + G + A++ ++ PN ++ C
Sbjct: 153 KVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDK 212
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
LV+++ + + E+ S I P V+ Y L++ + + A L + M ++ I N + T
Sbjct: 213 LVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNI-NPNVYTF 271
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ F E + + V + + L + YN+L++ + +A + + +
Sbjct: 272 SILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQ 331
Query: 193 RGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLAT 245
RG+ P+ VWS + M G + K++E + P + T
Sbjct: 332 RGVTPD-------VWSYSI--MINGFCKIKMVDEAMKLFEEMHCKQIFPNVVT 375
>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 582
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 1/170 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
YKE I +M SG+ + S+ +I+A+ + R EEA+ + EM P +
Sbjct: 295 YKEVSKIYDQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNI 354
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L + +G+V+++K F+ ++ I P + Y +L+ Y ++ + A + +
Sbjct: 355 LLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDG 414
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
G MIKG +M+E V++K+ G +++A
Sbjct: 415 FEPNIVTYGTMIKGYAKANDVEKMME-VYEKMRLSGIKANQTILTTIMDA 463
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 97/209 (46%), Gaps = 7/209 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY---VEMEKVRCDPN 57
GG +AI RM SG ++ ++ +++ F +G +F+EA + + ++ +K P+
Sbjct: 187 GGKCNNAEAIFRRMQSSGPEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPD 246
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
++ ++ +Y AG D++++ F + G+ S + Y L++ + + + D
Sbjct: 247 QKMYHMMIYMYKKAGNYDKARKVFSSMVGKGVPQSTVTYNSLMSF---ETNYKEVSKIYD 303
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+M + I +IK + + VF+++ G + YN LL+A
Sbjct: 304 QMQRSGIQPDVVSYALLIKA-YGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAIS 362
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G+ E+A V + +FP+L+ + ++
Sbjct: 363 GMVEQAKTVFKSMRRDRIFPDLWSYTTML 391
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 97/218 (44%), Gaps = 7/218 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS +S+ G + N S+ A++E++ +GG+ A + M+ +P+ T
Sbjct: 153 GNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAVTY 212
Query: 62 EAVLSVYCFAGLVDESKEQFQEI---KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+ +L + E++E F+ + K S + P Y M++ +Y K+ +D A +
Sbjct: 213 QIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYDKARKVFSS 272
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M + ++ E+N++ V ++D++ G + Y L++A
Sbjct: 273 MVGKGVPQSTVTYNSLMSF----ETNYKEVSKIYDQMQRSGIQPDVVSYALLIKAYGRAR 328
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E A V +E G+ P +N L+ + + M E
Sbjct: 329 REEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVE 366
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 84/183 (45%), Gaps = 5/183 (2%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
F +I A+ + G F A + + K+ PN + A++ Y G + ++ F+ ++
Sbjct: 142 FLMLITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNNAEAIFRRMQ 201
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH--QVTGQMIKGEFDDES 143
SSG PS + Y ++L + + +++ +A + + + + S + Q M+ +
Sbjct: 202 SSGPEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAG 261
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
N+ VF + +G YN+L+ + +E +++ D+ + G+ P++ +
Sbjct: 262 NYDKARKVFSSMVGKGVPQSTVTYNSLMS--FETNYKE-VSKIYDQMQRSGIQPDVVSYA 318
Query: 204 KLV 206
L+
Sbjct: 319 LLI 321
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 3/216 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + ++L M G N ++ ++EA + FE+A+ EM C PN T
Sbjct: 157 GRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTY 216
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE-MH 120
+++ C G VD+++E + S G P + Y LL S RWDD L E M
Sbjct: 217 NVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMME 276
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + N +VT M+ F + V +++ G N ++ ++ G
Sbjct: 277 KNCMPN--EVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRV 334
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ A ++L++ G P+ + ++ + W+
Sbjct: 335 DDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWD 370
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 1/171 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + + M E N +F+ +I F +GG E AI+ +M + C N V++
Sbjct: 268 EELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINS 327
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G VD++ + ++ S G P + Y +L ++ RWDDA LL+EM N
Sbjct: 328 ICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPP- 386
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
++VT + + + ++++ G +G+ YNAL+ G
Sbjct: 387 NEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQG 437
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 4/206 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG+ + +L +M+E G A N+ N VI + + GR ++A K +M C+P+ +
Sbjct: 296 GGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTIS 355
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
VL C A D++KE E+ + P+ + + + + + + A L+++M
Sbjct: 356 YTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMS 415
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + + VT + F + + +F + C+ + Y LL L
Sbjct: 416 EHGCT-VGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTIT---YTTLLTGLCNAERL 471
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ AA ++ E + P + N LV
Sbjct: 472 DGAAELVAEMLRGDCPPNVVTFNVLV 497
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 83/191 (43%), Gaps = 1/191 (0%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
VA ++ ++ +I GR +A+ +M + C PN T +L C +++
Sbjct: 139 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAM 198
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE 138
E+++ G P+++ Y +++ + R DDA LL+ + + ++KG
Sbjct: 199 AVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKG- 257
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
W VE +F ++ + ++ L+ G+ ERA +VL++ T+ G
Sbjct: 258 LCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATN 317
Query: 199 LFRHNKLVWSV 209
N ++ S+
Sbjct: 318 TTLCNIVINSI 328
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 94/208 (45%), Gaps = 4/208 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ ++ +MSE G ++NA++ F G + A++ + M C PN T
Sbjct: 402 GLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNTITY 458
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ C A +D + E E+ P+V+ + +L++ + + ++A L+++M
Sbjct: 459 TTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMME 518
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + ++ G D S+ +E + L +G + +++++ L E
Sbjct: 519 HGCTPNLITYNTLLDGITKDCSSEDALE-LLHGLVSKGVSPDVITFSSIIGILSKEDRIE 577
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
A ++ G+ P+ +NK++ +
Sbjct: 578 EAVQLFHVVQDIGMRPKAVVYNKILLGL 605
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 2 GLYKECQA-----ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
G+ K+C + +L + GV+ + +F+++I + R EEA++ + ++ + P
Sbjct: 534 GITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRP 593
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+L C +D + + F + S+G +P+ Y +L+ A +A LL
Sbjct: 594 KAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLL 653
Query: 117 DEMHTNRISN 126
+ + + N
Sbjct: 654 SVLCSRGVLN 663
>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
Length = 677
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 3/208 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME--KVRCDPNE 58
G Y + + M + V ++ + N +I + G+ EAI+ + M + +C P+
Sbjct: 129 GAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDV 188
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T +++ YC G V+ K F + + G+ P+++ Y LL YA +A + +
Sbjct: 189 VTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNL 248
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ N + V+ + + + + VF+K+ YNAL++A G
Sbjct: 249 IKKNGLRP-DIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAG 307
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
+ + A +L E K G+ P++ + L+
Sbjct: 308 MLKEAVGLLHEMEKDGIQPDVVSISTLL 335
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + C+AI M GV N ++N+++ A+ G EA+ + ++K P+ +
Sbjct: 202 GQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSY 261
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L+ Y + ++++E F ++K + P+ + Y L+ Y + +A GLL EM
Sbjct: 262 TSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEK 321
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I V+ + +E + + G L YN+ +++ G E
Sbjct: 322 DGIQP-DVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYE 380
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A + + + P+ +N L+
Sbjct: 381 KALELYTSMRESNVKPDAVTYNILI 405
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y E M +S V+ + ++++I ++ + G+ EA + M+K C P+ T
Sbjct: 412 GKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTY 471
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G + + F+E++ +GI P + L+ + K + L++ M
Sbjct: 472 TTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKK 531
Query: 122 NRI 124
I
Sbjct: 532 KSI 534
>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 628
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 94/199 (47%), Gaps = 12/199 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M G + F +++A R+ G +EA + E+ + R P+ + ++L +C
Sbjct: 188 VLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEEL-RYRWKPSVKHFTSLLYGWC 246
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RIS 125
G + E+K ++K +GI P ++ Y LL YA++++ DAY LL EM +
Sbjct: 247 KEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNAT 306
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ + + K E +E+ VF ++ G + Y+ L+ G +R
Sbjct: 307 SYTVLIQSLCKHERLEEAT-----RVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYE 361
Query: 186 VLDEATKRGLFPE--LFRH 202
+LDE ++G FP +++H
Sbjct: 362 LLDEMIQQGHFPNQVIYQH 380
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M G N+ S+ +I++ + R EEA + +VEM++ C + T ++S +C
Sbjct: 292 LLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLISGFC 351
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103
G + E E+ G P+ + Y ++ +
Sbjct: 352 KWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAH 385
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 2/220 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + RM + S+NA++ + G F +A K Y+ M+ + P+ T
Sbjct: 90 GKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTH 149
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ +C G + + G + + YC +++ + K N +AY L DEM
Sbjct: 150 TIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLK 209
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I ++I + N Q E +F K+ G + +N ++ L G +
Sbjct: 210 QGICPDILTFNKLIH-VLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAID 268
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVH-RMWEGGAY 220
AAR+L+ GL P++ +N L+ H ++ E Y
Sbjct: 269 EAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECY 308
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 1/209 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL M G+ + ++N ++ + + + + + M + C PN T ++ +C
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC 542
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
V E+ E F+E+K+ G+ P ++ C L+ + D AY L + +
Sbjct: 543 KDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYST 602
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ F ++ N M E +F K+ Y ++++ G + A L E
Sbjct: 603 AIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLE 662
Query: 190 ATKRGLFPELFRHNKLVWSVDV-HRMWEG 217
+GL P K++ + V HR+ E
Sbjct: 663 NISKGLVPSFTTCGKVLNCLCVTHRLSEA 691
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 6/211 (2%)
Query: 1 GGLYKE-CQA----ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
G YKE CQ + M + G+ + +FN +I + G +E+ K + ++ K
Sbjct: 189 SGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVC 248
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
PN T + C G +DE+ + I S G+ P V+ Y L+ + K ++ +A
Sbjct: 249 PNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECY 308
Query: 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
L +M N ++ T I F Q + + +G+ Y++L+ L
Sbjct: 309 LHKM-VNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLC 367
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G RA V EA ++G + +N LV
Sbjct: 368 NDGDMNRAMAVFYEAMEKGFKHSIILYNTLV 398
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 84/205 (40%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L + G+ + S+N +I F + + EA +M +PNE T
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTY 324
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C AG++ + + ++ G +P Y L+ + A + E
Sbjct: 325 NTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAME 384
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + ++KG Q ++ + D + G + YN ++ L +G
Sbjct: 385 KGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMME-HGCSPDIWTYNLVVNGLCKMGCLS 443
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +L++A +G P++F N L+
Sbjct: 444 DANGILNDAIAKGCIPDIFTFNTLI 468
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 13/230 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ E G + +N +++ + G +A++ +M + C P+ T V++
Sbjct: 377 AVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGL 436
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G + ++ + + G +P + + L+ Y K D A +LD M ++ I+
Sbjct: 437 CKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDV 496
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G +V+ F + +G + YN L+E+ A +
Sbjct: 497 ITYNTLLNGLCKARKLDNVVD-TFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFK 555
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238
E RGL P++ L+ + G L+K YE+F+ E
Sbjct: 556 EMKTRGLTPDIVTLCTLICG-----LCSNGE-------LDKAYELFVTIE 593
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
FN +I AF + A K + +M C P+ T ++ YC G +D + E
Sbjct: 605 FNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENI 664
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
S G++PS +L ++R +A +++ M N I
Sbjct: 665 SKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGI 703
>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
[Arabidopsis thaliana]
Length = 602
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 104/231 (45%), Gaps = 6/231 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M G++ N ++N +++ + R EA M + +C P+ T
Sbjct: 312 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC VD+ + F+ I G++ + + Y +L+ + +S + A L EM +
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVS 431
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + G ++ G D+ + +E +F+ L LG+ Y ++E + G E
Sbjct: 432 HGVLPDVMTYGILLDGLCDNGKLEKALE-IFEDLQKSKMDLGIVMYTTIIEGMCKGGKVE 490
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
A + +G+ P N + ++V + + + G+ + ++ L KM E
Sbjct: 491 DAWNLFCSLPCKGVKP-----NVMTYTVMISGLCKKGSLSEANILLRKMEE 536
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 89/199 (44%), Gaps = 3/199 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ RM E+G + ++N+++ + G A +ME+ + T ++
Sbjct: 179 VLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSL 238
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G +D + F+E+++ GI SV+ Y L+ K+ +W+D LL +M + I +
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVP-N 297
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVL 187
+T ++ F E Q ++ ++ G + YN L++ +C+ R A +L
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG-YCMQNRLSEANNML 356
Query: 188 DEATKRGLFPELFRHNKLV 206
D + P++ L+
Sbjct: 357 DLMVRNKCSPDIVTFTSLI 375
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 13/204 (6%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M G+ + ++N+++ + G++ + +M PN T +L V+
Sbjct: 249 SLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVF 308
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G + E+ E ++E+ + GI P+++ Y L+ Y NR +A +LD M N+ S
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368
Query: 129 QVTGQMIKGEFDDESNWQMVE------YVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+IKG + MV+ VF ++ G Y+ L++ G +
Sbjct: 369 VTFTSLIKG-------YCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKL 421
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A + E G+ P++ + L+
Sbjct: 422 AEELFQEMVSHGVLPDVMTYGILL 445
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/198 (17%), Positives = 79/198 (39%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L ++ + G ++ +FN +I G+ +A+ M + C P+ T ++++
Sbjct: 144 SVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGI 203
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +G + + ++++ + V Y ++ + D A L EM T I +
Sbjct: 204 CRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSV 263
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+++G W + + + +N LL+ G + A +
Sbjct: 264 VTYNSLVRG-LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 322
Query: 189 EATKRGLFPELFRHNKLV 206
E RG+ P + +N L+
Sbjct: 323 EMITRGISPNIITYNTLM 340
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+ +IE +GG+ E+A + + PN T ++S C G + E+ ++++
Sbjct: 476 YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 535
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----TNRISNIHQVTGQMIKGEFD 140
G P+ Y L+ + + + L++EM + S+I V ++ GE D
Sbjct: 536 EDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGELD 594
>gi|125600186|gb|EAZ39762.1| hypothetical protein OsJ_24200 [Oryza sativa Japonica Group]
Length = 875
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 90/185 (48%), Gaps = 1/185 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y +L M+ESG++ + +FN++++ F GG + A K +M+ P T A
Sbjct: 349 YDRVSPLLEHMNESGISPDECTFNSLVQMFATGGYPQRAKKLLGKMKYAGFKPKCETYAA 408
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ LV E+ + E+K+SG+ P+V+ Y +L+ +A++ + ++A + M +
Sbjct: 409 AITTLSRNYLVSEAIYLYNEMKASGVEPNVVVYGVLIDTFAETGQLEEALHYNNLMEESG 468
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I+ V +IK + + W+ + ++ ++ G + N++L LG+ +
Sbjct: 469 IAPNQIVLTSLIKA-YSKANCWKEAQDLYSRMKSMDGGPDIVASNSMLNLYANLGMVTKV 527
Query: 184 ARVLD 188
+ D
Sbjct: 528 KEIFD 532
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 88/216 (40%), Gaps = 22/216 (10%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + +L +M +G +++ A I + EAI Y EM+ +PN
Sbjct: 381 GGYPQRAKKLLGKMKYAGFKPKCETYAAAITTLSRNYLVSEAIYLYNEMKASGVEPNVVV 440
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ + G ++E+ ++ SGI P+ + L+ Y+K+N W +A L M
Sbjct: 441 YGVLIDTFAETGQLEEALHYNNLMEESGIAPNQIVLTSLIKAYSKANCWKEAQDLYSRMK 500
Query: 121 ----------TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
+N + N++ G + K V+ +FD L + Y ++
Sbjct: 501 SMDGGPDIVASNSMLNLYANLGMVTK-----------VKEIFDCLRRNNQADDVS-YTSM 548
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +GL + RV + GL + +N ++
Sbjct: 549 ISLYKNMGLLNESVRVAHDLQNSGLLSDCASYNAVM 584
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 97/256 (37%), Gaps = 46/256 (17%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K+ + M + GVA ++ +FN +I F G +EA + M +P+ +T
Sbjct: 138 AGKLKDAMDMFMGMPDYGVAADTCTFNTLINIFGSCGNVKEAEALFASMIVRGTNPDVKT 197
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-------- 112
+++++ G V+ + + I G+ + Y ++L V + +A
Sbjct: 198 FNVMMTLFASKGDVEGVLKHYYHIGKMGLSADTVSYGIVLRVLCERKMVHEAEDVIVGIM 257
Query: 113 --------------------YGLLDEMHT-----NRISNIHQVTGQMIKGEFDDESNWQM 147
GLLD+ + R + T I F + W+
Sbjct: 258 RSGTCVPEQSLPVVMKMYIDQGLLDKANAFFDRHCRGDEVSSKTFAAIMDAFAERGLWEE 317
Query: 148 VEYVFDKLNCEGYGL---GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
E+VF G+ G+ YN +++A +R + +L+ + G+ P+ N
Sbjct: 318 AEHVF----YSHRGVRRRGIVEYNVMVKAYGAAKRYDRVSPLLEHMNESGISPDECTFNS 373
Query: 205 LVWSVDVHRMWEGGAY 220
LV +M+ G Y
Sbjct: 374 LV------QMFATGGY 383
>gi|255661172|gb|ACU25755.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 426
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y +S A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERSGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 11/214 (5%)
Query: 1 GGLYKE-----CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
GGL KE + + MS + N +FN +I+ + + G + AI M+K + +
Sbjct: 109 GGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVE 168
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
P+ T ++LS C A ++E++ EIK +G +P Y ++ KS DD G
Sbjct: 169 PSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKS---DDGAGA 225
Query: 116 LDEMHTNRIS---NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
+++ I I T ++ E + E V L G G YN ++
Sbjct: 226 ALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVN 285
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G +RA +++ RGL P N ++
Sbjct: 286 GYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVI 319
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + +L + E G+ +N ++ + Q G + AI +ME PN
Sbjct: 256 GKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAF 315
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+V+ +C ++D+++E +++ GI PSV Y +L+ Y + + + +L+EM
Sbjct: 316 NSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEE 375
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N G +I D + E V + G YN L++ +G
Sbjct: 376 NGEKPNVISYGSLINCLCKDGKILE-AEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLR 434
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R DE +K G+ + +N L+
Sbjct: 435 EALRFFDEMSKNGIGATIVTYNSLI 459
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 85/196 (43%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
+ +M G+A + +++N +I+ + + F + EME+ PN + ++++ C
Sbjct: 335 VKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCK 394
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G + E++ +++ G+LP+ Y ML+ + +A DEM N I
Sbjct: 395 DGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVT 454
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+IKG + E +F + G+ + YN+L+ G ++ + +
Sbjct: 455 YNSLIKG-LCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETM 513
Query: 191 TKRGLFPELFRHNKLV 206
K GL P + + L+
Sbjct: 514 KKLGLKPTINTFHPLI 529
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 86/202 (42%), Gaps = 2/202 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +L M GV N++ +N +I+ G+ EA++ + EM K T +++
Sbjct: 400 EAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLI 459
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G + E++E F I S+G P V+ Y L++ Y+ + L + M +
Sbjct: 460 KGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLK 519
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+I G + ++ E +F+++ YNA++ G ++A
Sbjct: 520 PTINTFHPLISG--CSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFS 577
Query: 186 VLDEATKRGLFPELFRHNKLVW 207
+ E G+ P+ +N L+
Sbjct: 578 LQKEMVDMGVRPDNKTYNSLIL 599
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 85/211 (40%), Gaps = 12/211 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K + M V N +N +I + R +A K + EM PN T
Sbjct: 80 GDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTF 139
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC AG VD + + +K + PS++ + LL+ K+ R ++A +L+E+
Sbjct: 140 NTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKC 199
Query: 122 NRISNIHQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYN----ALLEALW 175
N + G + DD + + Y E G G++ N LL L
Sbjct: 200 NGFVPDGFTYSIIFDGLLKSDDGAGAALDLYR------EAIGKGVKIDNYTCSILLNGLC 253
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G E+A VL + GL P +N +V
Sbjct: 254 KEGKVEKAEEVLKSLVEHGLVPGEVIYNTIV 284
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 57/115 (49%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + + M + ++ + +NA+I +++ G ++A EM + P+ +T +++
Sbjct: 541 ETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILG 600
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+ G + E+K+ ++K+ G++P Y +L+ + ++ AY EM N
Sbjct: 601 HLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLEN 655
>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 806
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 110/245 (44%), Gaps = 13/245 (5%)
Query: 5 KECQA---ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
K CQ +L M G+ R ++F+ V+ ++ + G+ +A+K M++ +PN
Sbjct: 221 KLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLIC 280
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ V+ A ++++ + ++ GI+P+V+ Y ++ Y +R ++A LL++MH+
Sbjct: 281 NTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHS 340
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE-GYGLGMRFYNALLEALWCLGLR 180
+V+ I G E V + K+ E G YN L+ L
Sbjct: 341 KGCLP-DKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHA 399
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
+ A L +A ++G FR +KL +S VH + + G + +N EM G
Sbjct: 400 DEALWFLKDAQEKG-----FRIDKLGYSAIVHALCKEGRMSEAKDLIN---EMLSKGHCP 451
Query: 241 PQLAT 245
P + T
Sbjct: 452 PDVVT 456
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 10/202 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +L+ M +GV N N I+ F + R E+A++ M+ V PN T
Sbjct: 255 AGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVT 314
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ YC V+E+ E +++ S G LP + Y ++ K R + L+ +M
Sbjct: 315 YNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMA 374
Query: 121 TNRISNIHQVT-----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
QVT + K + DE+ W ++ D +G+ + Y+A++ AL
Sbjct: 375 KEHGLVPDQVTYNTLIHMLTKHDHADEALW----FLKDAQE-KGFRIDKLGYSAIVHALC 429
Query: 176 CLGLRERAARVLDEATKRGLFP 197
G A +++E +G P
Sbjct: 430 KEGRMSEAKDLINEMLSKGHCP 451
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 2/185 (1%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLEAVLSVYC 69
L E G + ++A++ A + GR EA EM K C P+ T AV++ +C
Sbjct: 406 LKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFC 465
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VD++K+ Q + + G P+ + Y LL ++ + +A +++ M + +
Sbjct: 466 RLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMN-MSEEHWWSPNS 524
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T +I E V ++ +G+ G N LL++L G A + ++E
Sbjct: 525 ITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEE 584
Query: 190 ATKRG 194
+G
Sbjct: 585 CLNKG 589
>gi|224140601|ref|XP_002323670.1| predicted protein [Populus trichocarpa]
gi|222868300|gb|EEF05431.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 60/113 (53%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +L +M + G N + +I +F + G+ + + + M+++ C PN +T +L
Sbjct: 194 EAKRVLDQMMQKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCLL 253
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
C+ G +DE+ E ++IK + + P + Y ++ + K R D+A LL+E
Sbjct: 254 KGMCYVGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNE 306
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 103/254 (40%), Gaps = 39/254 (15%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G N ++N +++ GR +EA + +++K +P+ T A++ +C G
Sbjct: 237 MDRIGCKPNIQTYNCLLKGMCYVGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGR 296
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL----------------- 116
DE+ E E G+ P+V+ + LL YAK R +G+L
Sbjct: 297 SDEAMELLNEAMEMGLAPNVVTFNTLLDGYAKEGRPLKGFGVLKLMKQRKCMPDYISYST 356
Query: 117 ------------------DEMHTNRISNIHQVTGQMIKG---EFDDESNWQMVEY-VFDK 154
+EM + + ++ +++G + E++ V Y VF+K
Sbjct: 357 LLHGLLLWGKVLAGLRIFNEMEGSGLEADERLMNSLVRGLCRKSIKENDLVEVAYEVFEK 416
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214
+ G+ + Y +++ALW + A L + + G P L N ++ ++ V
Sbjct: 417 MKKRGFVIEQSTYALVIQALWVAKKVDDAFINLHQMVRLGYIPRLITINNVIQALCVGGK 476
Query: 215 WEGGAYTAISVWLN 228
+ Y + ++ N
Sbjct: 477 VDKAFYVLVLMYEN 490
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 15/192 (7%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N FN V+ A + +K Y + +PN T ++ +C E+K
Sbjct: 140 NISDFNDVLMALVTANESDLVLKLYSGLSCYSLEPNSWTFSIMVRCHCKKKDPGEAKRVL 199
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI---SNIHQ----VTGQM 134
++ G P+V +L+ + K + + + + + M +RI NI + G
Sbjct: 200 DQMMQKGFNPNVATLTILINSFCKMGQLQNTFQVFEVM--DRIGCKPNIQTYNCLLKGMC 257
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
G D+ ++++E + K E + Y A+++ +G + A +L+EA + G
Sbjct: 258 YVGRIDEA--FELMEDI-KKTTVEP---DIYTYTAMMDGFCKVGRSDEAMELLNEAMEMG 311
Query: 195 LFPELFRHNKLV 206
L P + N L+
Sbjct: 312 LAPNVVTFNTLL 323
>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
Length = 583
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 3/208 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME--KVRCDPNE 58
G Y + + M + V ++ + N +I + G+ EAI+ + M + +C P+
Sbjct: 129 GAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDV 188
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T +++ YC G V+ K F + + G+ P+++ Y LL YA +A + +
Sbjct: 189 VTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNL 248
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ N + V+ + + + + VF+K+ YNAL++A G
Sbjct: 249 IKKNGLRP-DIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAG 307
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
+ + A +L E K G+ P++ + L+
Sbjct: 308 MLKEAVGLLHEMEKDGIQPDVVSISTLL 335
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + C+AI M GV N ++N+++ A+ G EA+ + ++K P+ +
Sbjct: 202 GQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSY 261
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L+ Y + ++++E F ++K + P+ + Y L+ Y + +A GLL EM
Sbjct: 262 TSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEK 321
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I V+ + +E + + G L YN+ +++ G E
Sbjct: 322 DGIQP-DVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYE 380
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A + + + P+ +N L+
Sbjct: 381 KALELYTSMRESNVKPDAVTYNILI 405
>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial; Flags: Precursor
Length = 602
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 104/231 (45%), Gaps = 6/231 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M G++ N ++N +++ + R EA M + +C P+ T
Sbjct: 312 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC VD+ + F+ I G++ + + Y +L+ + +S + A L EM +
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVS 431
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + G ++ G D+ + +E +F+ L LG+ Y ++E + G E
Sbjct: 432 HGVLPDVMTYGILLDGLCDNGKLEKALE-IFEDLQKSKMDLGIVMYTTIIEGMCKGGKVE 490
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
A + +G+ P N + ++V + + + G+ + ++ L KM E
Sbjct: 491 DAWNLFCSLPCKGVKP-----NVMTYTVMISGLCKKGSLSEANILLRKMEE 536
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 92/206 (44%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ RM E+G + ++N+++ + G A+ +ME+ + T
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 231
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G +D + F+E+++ GI SV+ Y L+ K+ +W+D LL +M +
Sbjct: 232 STIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 291
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
I + +T ++ F E Q ++ ++ G + YN L++ +C+ R
Sbjct: 292 REIVP-NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG-YCMQNRL 349
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A +LD + P++ L+
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLI 375
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 13/204 (6%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M G+ + ++N+++ + G++ + +M PN T +L V+
Sbjct: 249 SLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVF 308
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G + E+ E ++E+ + GI P+++ Y L+ Y NR +A +LD M N+ S
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368
Query: 129 QVTGQMIKGEFDDESNWQMVE------YVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+IKG + MV+ VF ++ G Y+ L++ G +
Sbjct: 369 VTFTSLIKG-------YCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKL 421
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A + E G+ P++ + L+
Sbjct: 422 AEELFQEMVSHGVLPDVMTYGILL 445
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/198 (18%), Positives = 80/198 (40%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L ++ + G ++ +FN +I+ G+ EA+ M + C P+ T ++++
Sbjct: 144 SVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGI 203
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +G + + ++++ + V Y ++ + D A L EM T I +
Sbjct: 204 CRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSV 263
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+++G W + + + +N LL+ G + A +
Sbjct: 264 VTYNSLVRG-LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 322
Query: 189 EATKRGLFPELFRHNKLV 206
E RG+ P + +N L+
Sbjct: 323 EMITRGISPNIITYNTLM 340
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+ +IE +GG+ E+A + + PN T ++S C G + E+ ++++
Sbjct: 476 YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 535
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----TNRISNIHQVTGQMIKGEFD 140
G P+ Y L+ + + + L++EM + S+I V ++ GE D
Sbjct: 536 EDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGELD 594
>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 103/249 (41%), Gaps = 13/249 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERT 60
G E A+L RM E G+ ++ +++ + G A+ +ME++ PN
Sbjct: 198 GRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVI 257
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ C G +++ F E++ GI P + Y ++ + S RW DA LL EM
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+IS VT + F E + E ++D++ G Y+++++
Sbjct: 318 ERKISP-DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRL 376
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV------WSVD-----VHRMWEGGAYTAISVWLNK 229
+ A + +G P L N L+ +D +H M E G + +
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436
Query: 230 MYEMFMMGE 238
++ +++G+
Sbjct: 437 IHGFYLVGD 445
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 92/212 (43%), Gaps = 15/212 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + Q + + M E G+ + ++N++I F GR+ +A + EM + + P+ T
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ + G E++E + E+ GI+P+ + Y ++ + K NR D A + M T
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 122 NRISNIHQVTGQMIKG-----EFDD--ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
S +I G DD E +M E G YN L+
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE--------TGLVADTTTYNTLIHGF 440
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +G A +L E GL P++ + L+
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 77/182 (42%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SF +I+ F + A+ + ++ K+ P+ T +L C V E+ F ++
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ P+V+ + L+ + R +A LLD M + + G ++ G
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDT 235
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
++ + + Y+A++++L G A + E ++G+FP+LF +N
Sbjct: 236 VSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295
Query: 205 LV 206
++
Sbjct: 296 MI 297
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + + M G+ ++ +++++I+ + R +EA + + M PN T
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ YC AG VD+ E F E+ GI+ + + Y L+ + K + A + EM
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEM 642
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+GV + ++N +I G+F EA + Y EM P+ T +++ C +DE
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ + F + S P+V+ + L+ Y K+ R DD L EM
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 79/202 (39%), Gaps = 2/202 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +M E+ N +F ++ + GR EA+ M + P + T ++
Sbjct: 167 EALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIV 226
Query: 66 SVYCFAGLVDESKEQFQEIKS-SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
C G + + ++++ S I+P+V+ Y ++ K R DA L EM I
Sbjct: 227 DGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
MI G F W E + ++ + YNAL+ A G A
Sbjct: 287 FPDLFTYNSMIVG-FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ DE RG+ P ++ ++
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMI 367
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-----------PNE 58
+L M SG+ + + + +++ G+ ++A++ + M+K + D P+
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+T ++S G E++E ++E+ GI+P + Y ++ K +R D+A + D
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571
Query: 119 MHT-----NRISNIHQVTGQMIKGEFDD 141
M + N ++ + G G DD
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDD 599
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 25/193 (12%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+ G + N +FN +I+ + R ++ ++ EM + + T ++ + G
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ + + QE+ SSG+ P ++ LL + + DA + M Q
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVM-------------Q 492
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
K + D + VE ++ YN L+ L G A + +E R
Sbjct: 493 KSKKDLDASHPFNGVEP------------DVQTYNILISGLINEGKFLEAEELYEEMPHR 540
Query: 194 GLFPELFRHNKLV 206
G+ P+ ++ ++
Sbjct: 541 GIVPDTITYSSMI 553
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 96/218 (44%), Gaps = 2/218 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E Q +L M + N +++++I+ + G+ +A + + M +PN T
Sbjct: 230 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVT 289
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +C VD + +E+ ++G LP ++ Y L+ K+ R +A L +M
Sbjct: 290 YNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMK 349
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ N +T + G F M +FD + + + ++ L+E GL
Sbjct: 350 A-KFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLV 408
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWS-VDVHRMWEG 217
+ A R+L+E P+++ + LV V RM E
Sbjct: 409 DDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEA 446
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 99/236 (41%), Gaps = 44/236 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M ESG+A N +++ VI F + + + A K + +M + C PN T +LS C
Sbjct: 64 LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 123
Query: 70 FAGLVDESKEQFQEIKSSGI-----------------------------------LPSVM 94
GL+DE+ E E++ G+ P V+
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV 183
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNR----ISNIHQVTGQMIKGEFDDESNWQMVEY 150
Y L+A K+ R D+A L ++M N + + + KG+ E+ Q++E
Sbjct: 184 AYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQ-QVLET 242
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ D+ NC + Y++L++ L G A V RG+ P + +N L+
Sbjct: 243 MEDR-NCTP---NVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLI 294
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 93/210 (44%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E +L M E G+ + S++ ++ + G+ + A+K + + C P+
Sbjct: 126 GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAY 185
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
+++ C G +DE+ + F++++ + P V+ + L+ K +R +A +L+ M
Sbjct: 186 STLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 245
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N I+ + G G+ D + VF ++ G + YN+L+
Sbjct: 246 RNCTPNVITYSSLIDGLCKTGQVRD------AQEVFKRMIVRGIEPNVVTYNSLIHGFCM 299
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ A +++E T G P++ +N L+
Sbjct: 300 TNGVDSALLLMEEMTATGCLPDIITYNTLI 329
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 88/197 (44%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M+ +G + ++N +I+ + GR EA + + +M+ C+P+ T ++ +C
Sbjct: 309 LMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFC 368
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+D ++ F ++ +LP V+ + L+ Y + DDA LL+EM + S
Sbjct: 369 KLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVY 428
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ G F V ++ G + Y AL++A G A ++L+E
Sbjct: 429 TYTSLVDG-FCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEE 487
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P + + L+
Sbjct: 488 MVGNGVQPNVITYRSLI 504
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 9/209 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ Q + RM G+ N ++N++I F + A+ EM C P+ T
Sbjct: 266 GQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITY 325
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G E+ F ++K+ P V+ Y L+ + K R D A L D+M
Sbjct: 326 NTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLK 385
Query: 122 NRISNIHQVTGQMIKGEFD----DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ +++G + D++ + E V + + Y Y +L++ +
Sbjct: 386 QAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVY-----TYTSLVDGFCKV 440
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G A RVL KRG P + + L+
Sbjct: 441 GRMVEARRVLKRMAKRGCQPNVVTYTALI 469
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 36/186 (19%)
Query: 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
+N ++ +I+ + R EA + +M+K PNE T +++ +C V +
Sbjct: 5 KNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLL 64
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140
+E+K SG+ P+V+ Y ++ + + + D AY L
Sbjct: 65 LKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLF------------------------ 100
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
QMVE G + YN LL L GL + A +LDE +RGL P+ F
Sbjct: 101 ----RQMVE--------NGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKF 148
Query: 201 RHNKLV 206
++ L+
Sbjct: 149 SYDTLM 154
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 11/200 (5%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M + V + +F+ ++E + G ++A + EM C P+ T +++
Sbjct: 377 RTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDG 436
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+C G + E++ + + G P+V+ Y L+ + ++ + AY LL+EM N +
Sbjct: 437 FCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQP- 495
Query: 128 HQVTGQMIKGEF----DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +T + + G F D E +M+E + NC+ M Y +++ L C R A
Sbjct: 496 NVITYRSLIGGFCGTGDLEEARKMLERLERDENCKA---DMFAYRVMMDGL-CRTGRMSA 551
Query: 184 ARVLDEATKRGLFPELFRHN 203
A L EA K+ P RH+
Sbjct: 552 ALELLEAIKQSGTPP--RHD 569
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++M + G N ++N +I F + + A EM++ PN T V+
Sbjct: 25 EATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVI 84
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+C VD + + F+++ +G +P+++ Y LL+ ++ D+AY LLDEM
Sbjct: 85 HGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMR 139
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 60/120 (50%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL + + +L M S + + ++ ++++ F + GR EA + M K C PN T
Sbjct: 405 AGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVT 464
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ +C AG + + +E+ +G+ P+V+ Y L+ + + ++A +L+ +
Sbjct: 465 YTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLE 524
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L RM++ G N ++ A+I+AF + G+ A K EM PN T
Sbjct: 441 GRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITY 500
Query: 62 EAVLSVYCFAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +C G ++E+++ + + + + Y +++ ++ R A LL+ +
Sbjct: 501 RSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIK 560
Query: 121 TNRISNIHQVTGQMIKG 137
+ H + +I+G
Sbjct: 561 QSGTPPRHDIYVALIRG 577
>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 426
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 34/229 (14%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E +A++S M +GV ++ S+ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARALVSEMRTAGVMPDTVSYCTLLTMYVENQKFLEALSLFSEMREIQCSFDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI-SNI---------------HQVTGQMIKGEFDDESNWQMVEY---------------- 150
I N+ H+ +I+ D + Y
Sbjct: 214 NIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIEPNAITYSTIISIWGKVGKLDRA 273
Query: 151 --VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+F KL C G + Y ++ A GL A R+L E + P
Sbjct: 274 AMLFQKLRCSGIEIDQVLYQTMIVAYERAGLVAHAKRLLQELKRPDNIP 322
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 83/173 (47%), Gaps = 8/173 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + + L +M E V + ++ +IE R+ + AI + +++ P+
Sbjct: 23 GLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDYSRAISIFSRLKRSGIAPDLVAY 82
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++V+ A L E++ E++++G++P + YC LL +Y ++ ++ +A L EM
Sbjct: 83 NSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVENQKFLEALSLFSEMRE 142
Query: 122 NRIS------NIH-QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFY 167
+ S NI V GQ+ + D+ W M + + N Y +R Y
Sbjct: 143 IQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEP-NVVSYNTLLRVY 194
>gi|255661164|gb|ACU25751.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 426
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSXFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
Length = 665
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 3/208 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME--KVRCDPNE 58
G Y + + M + V ++ + N +I + G+ EAI+ + M + +C P+
Sbjct: 129 GAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDV 188
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T +++ YC G V+ K F + + G+ P+++ Y LL YA +A + +
Sbjct: 189 VTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNL 248
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ N + V+ + + + + VF+K+ YNAL++A G
Sbjct: 249 IKKNGLRP-DIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAG 307
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
+ + A +L E K G+ P++ + L+
Sbjct: 308 MLKEAVGLLHEMEKDGIQPDVVSISTLL 335
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + C+AI M GV N ++N+++ A+ G EA+ + ++K P+ +
Sbjct: 202 GQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSY 261
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L+ Y + ++++E F ++K + P+ + Y L+ Y + +A GLL EM
Sbjct: 262 TSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEK 321
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I V+ + +E + + G L YN+ +++ G E
Sbjct: 322 DGIQP-DVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYE 380
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A + + + P+ +N L+
Sbjct: 381 KALELYTSMRESNVKPDAVTYNILI 405
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 105/237 (44%), Gaps = 22/237 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+++E AI + + ++G+ + S+ +++ A+ + + E+A + + +M+K C PN+ +
Sbjct: 237 GMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSY 296
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ Y AG++ E+ E++ GI P V+ LLA + + +L+ +
Sbjct: 297 NALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARS 356
Query: 122 -----NRISNIHQVTGQMIKGEFDD---------ESNWQMVEYVFDKLNCEGYGLG---- 163
N ++ + + G+++ ESN + ++ L LG
Sbjct: 357 RGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTE 416
Query: 164 -MRFYNALLEALWCL---GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+RF+ ++++ G A K G FP++ + L+ + + W+
Sbjct: 417 SLRFFEDMVDSKVSSTKEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWK 473
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 93/196 (47%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L +M + G+ N ++ +I+ F Q G ++A + EM + P T A+++ +C
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G ++++ QE+ G +P V+ Y +++ + ++ + A+ L EM IS
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+I+G ++ + +F ++ G Y +L+ A G ++A R+ DE
Sbjct: 486 YSSLIQGLCKQRRLGEVCD-LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEM 544
Query: 191 TKRGLFPELFRHNKLV 206
++G P++ +N L+
Sbjct: 545 IQKGFSPDIVTYNVLI 560
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 1/193 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K + I M ESGV+ N ++N +I F G E + + EME+ C PN T +
Sbjct: 185 KIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTI 244
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ YC + E+ + + + G+ P+++ Y +++ + + + +L+EM R
Sbjct: 245 IDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRY 304
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+I G + + N+ + ++ G + Y L+ ++ G RA
Sbjct: 305 VPDRVTFNTLING-YCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAM 363
Query: 185 RVLDEATKRGLFP 197
LD+ RGL P
Sbjct: 364 EFLDQMRDRGLHP 376
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 36/205 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE IL MS+ + +FN +I + G F +A+ + EM K PN T
Sbjct: 287 GQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTY 346
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C AG ++ + E +++ G+ P+ Y L+ +++ AY ++ EM
Sbjct: 347 TTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVE 406
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N G+ + YNAL+ LG E
Sbjct: 407 N------------------------------------GFTPTIITYNALINGHCILGRME 430
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A+ +L E +RG P++ ++ ++
Sbjct: 431 DASGLLQEMIERGFIPDVVSYSTII 455
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 87/199 (43%), Gaps = 26/199 (13%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G++ + +++++I+ + R E + EM + P+E T ++++ YC G
Sbjct: 474 MVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGD 533
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+D++ E+ G P ++ Y +L+ + K +R +A LL ++
Sbjct: 534 LDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL-------------- 579
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ES + Y NC L + AL++ GL A RVL+ ++
Sbjct: 580 -----LYEESVPNEITYNTLIDNCN--NLEFKSALALMKGFCMKGLMNEADRVLESMLQK 632
Query: 194 GLFPELFRHNKLVWSVDVH 212
G ++ N+ V++V +H
Sbjct: 633 G-----YKLNEEVYNVIIH 646
>gi|356522073|ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 685
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 114/266 (42%), Gaps = 32/266 (12%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNERTLEAVLSVY 68
+ M E G+ N+ +N ++ G EA + + +M+ C + T +++++Y
Sbjct: 359 VYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTSATCLCDSWTFSSLITIY 418
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS--- 125
G V E++ E+ SG P++ L+ Y K R DD +++ IS
Sbjct: 419 SCTGNVSEAERMLNEMIESGSQPTIFVLTSLVQCYGKVGRTDDVVKTFNQLLDLGISPDD 478
Query: 126 -------NIHQVTGQMIKGEFDD---ESNWQM---VEYV----------FDKLNCEGYG- 161
N+ T + G+ +D ++N ++ V Y+ F K E +
Sbjct: 479 RFCGCLLNVMTQTPKEELGKLNDCVKKANPKLGSVVRYLVEGLEEGGGEFKKEASELFNS 538
Query: 162 ----LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEG 217
+ F N+L++ L L ++A +LD ++ ++ ++ WS+ + + G
Sbjct: 539 IADEVKKPFCNSLIDLCVNLNLLDKACELLDLGLTLEIYTDVQSKSQTQWSLHLKSLSLG 598
Query: 218 GAYTAISVWLNKMYEMFMMGEDLPQL 243
+ TA+ W+N + + GEDLP L
Sbjct: 599 ASLTALHAWINDLSKTLESGEDLPPL 624
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 13/183 (7%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY--VEMEKVRCDPNERTLEAVLSVYCF 70
+MS G + +++A+I+A+ + G + A++ Y EK R D T ++ +Y
Sbjct: 222 KMSSFGCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLD--TVTFSTLIKMYGL 279
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
AG D +QE+K G+ P+++ Y LL ++ R A + EM N S
Sbjct: 280 AGNYDGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVT 339
Query: 131 TGQMIK----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+++ G + +++ +V+ ++ +G + YN LL LGL A +
Sbjct: 340 YASLLRAYGRGRYSEDA-----LFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEI 394
Query: 187 LDE 189
++
Sbjct: 395 FED 397
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y C + M GV N +N +++A + R +A Y EM PN T
Sbjct: 280 AGNYDGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVT 339
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L Y +++ ++E+K G+ + Y LLA+ A ++A+ + ++M
Sbjct: 340 YASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDMK 399
Query: 121 TN 122
T+
Sbjct: 400 TS 401
>gi|255661214|gb|ACU25776.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 426
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 36/230 (15%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC-------- 54
L++E ++++S M +GV N+ S++ ++ + + RF EA+ + EM +++C
Sbjct: 94 LFREARSLISEMRVAGVMPNTVSYSTLLTMYVENKRFREALSVFAEMREIKCLLDLTTCN 153
Query: 55 ---------------------------DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87
+PN + +L VY A L E+ F+ ++
Sbjct: 154 IMIDVYGQLDMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
I+ +V+ Y ++ +Y K+ + A L+ EM NR + +T I +
Sbjct: 214 DIVQNVVTYNTMMMIYGKTLEHEKANNLIQEMQ-NRGIEPNSITYSTIISIWGKVGKLDR 272
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+F KL G + Y ++ A GL A R+L E + P
Sbjct: 273 AAMLFQKLRVSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPNNIP 322
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N ++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++ SGI + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRVSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRP 318
Query: 120 -HTNRISNIHQVTG 132
+ R + IH + G
Sbjct: 319 NNIPRDTAIHILAG 332
>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 867
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 37/205 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSVY 68
+L RMSE G ++ S+N VI++ G R +EA+ + M K C P+ + V+
Sbjct: 223 LLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGL 282
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G + ++ F E+ G++P+V+ Y ++ K+ D A +L +M N I
Sbjct: 283 FMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQ--- 339
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
DE Y A++ CLG + AA++
Sbjct: 340 -----------PDEVT----------------------YTAMIHGYSCLGRWKEAAKMFK 366
Query: 189 EATKRGLFPELFRHNKLVWSVDVHR 213
E T+ GL P++ N L+ S+ H+
Sbjct: 367 EMTREGLIPDIVTFNSLMDSLCKHK 391
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 90/205 (43%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + M+++G+ +S FN +I A + G +EA+ + EM PN T
Sbjct: 426 GRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTY 485
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V++ C G + ++ E+ ++ S G+ P+ + Y L+ + A L+ EM
Sbjct: 486 ATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMD 545
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I + I +E + VF+ + G + +N+L++ +G +
Sbjct: 546 QGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMD 605
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A VLD G P++ ++ L+
Sbjct: 606 KAFGVLDAMVSAGTEPDVVTYSTLI 630
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 2/170 (1%)
Query: 6 ECQAILSRMSESGVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+ + ++S M + G+ R N F+++I + GR A + + + P+ T ++
Sbjct: 535 KAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSL 594
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ YC G +D++ + S+G P V+ Y L+ Y KS R DD L EM R+
Sbjct: 595 IDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRV 654
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
++ G F + +F ++ G + + Y +L+ L
Sbjct: 655 KPTTVTYSLVLDGLF-RAGRTSAAKKMFHEMIESGTAMSISTYTIILQGL 703
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 92/214 (42%), Gaps = 12/214 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + K C + + M + GV N ++N+++ A + ++A +M P+E T
Sbjct: 286 GEISKACN-LFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVT 344
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ Y G E+ + F+E+ G++P ++ + L+ K R +A + +
Sbjct: 345 YTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIA 404
Query: 121 T-----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
T + IS + G +G F D +N +F + G +N L+ A
Sbjct: 405 TKGHKPDIISYSILLHGYATEGRFVDMNN------LFHSMTDNGIVADSHCFNILINAHA 458
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
G+ + A + E +G+ P + + ++ ++
Sbjct: 459 KRGMMDEALLIFTEMRGQGVSPNVVTYATVIAAL 492
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/202 (19%), Positives = 85/202 (42%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE I ++ G + S++ ++ + GRF + + M + +
Sbjct: 394 KEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNIL 453
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
++ + G++DE+ F E++ G+ P+V+ Y ++A + R DA L +M + +
Sbjct: 454 INAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGL 513
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
V +I+G + E V + ++ + F+++++ +L G A
Sbjct: 514 KPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQ 573
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
V + G P++F N L+
Sbjct: 574 DVFNLVIHIGDRPDIFTFNSLI 595
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G + +++ +I + + GR ++ + + EM R P T VL
Sbjct: 610 VLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLF 669
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
AG +K+ F E+ SG S+ Y ++L ++N D+A L ++
Sbjct: 670 RAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKL 719
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 49/105 (46%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + + +S SG+ N+ ++ +I + G EEA + MEK C P+ R L +
Sbjct: 745 EEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDI 804
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRW 109
+ + G + ++ ++ + I +L++++A R+
Sbjct: 805 IRMLLQKGEIVKAGYYMSKVDGTIISLEASTTSLLISLFASKGRY 849
>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
Length = 683
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G++ + +A+L +M G + NS +N +I A + G+ ++A + EM+ C P+ T
Sbjct: 397 GMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTY 456
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
++ C L++E++ F+ + G++ + + Y L+ ++ RW + L EM
Sbjct: 457 NTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLL 516
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
H ++ I +IK E N + +++ +G YN L+ L G
Sbjct: 517 HGCQLDVISY--NGLIKA-LCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGK 573
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
A + E +GL P++ +N L+
Sbjct: 574 VRDALELSKEMLNQGLTPDIVTYNTLI 600
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 3/197 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L +E + I + E GV N ++N +I A + GR++E ++ EM C + +
Sbjct: 468 LMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYN 527
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ C G VD S +E+ + GI P+ Y ML+ K+ + DA L EM
Sbjct: 528 GLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQ 587
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEY-VFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ +I G + W + +KL E + YN L+ + L +
Sbjct: 588 GLTPDIVTYNTLINGLC--KVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLD 645
Query: 182 RAARVLDEATKRGLFPE 198
AA +LD+A G+ P
Sbjct: 646 DAAMLLDKAISGGIVPN 662
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 5/208 (2%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L M+ G ++ + VI A G EA EM + C + T ++
Sbjct: 198 ALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGL 257
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G V E+ + + G +PSV+ Y LL ++ + D+A +L + + ++
Sbjct: 258 CGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLN 317
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
V I+G + + E +++ + +G + Y+ L+ L LG A R+LD
Sbjct: 318 TV----IRGCLTEGKLARATE-LYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLD 372
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWE 216
E ++G P + ++ L+ S + MW+
Sbjct: 373 EMEEKGCAPNIVTYSTLLHSFCRNGMWD 400
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 87/223 (39%), Gaps = 5/223 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A+L R+ E V N VI G+ A + Y M C P+ T ++
Sbjct: 300 EACAMLGRLPEVNVVM----LNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILM 355
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G + E++ G P+++ Y LL + ++ WDDA +LD+M S
Sbjct: 356 HGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFS 415
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
Q +I D Q V ++ +G + YN ++ L L E A
Sbjct: 416 MNSQGYNGIIYALCKDGKLDQATRLV-QEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEH 474
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLN 228
+ + G+ +N L+ ++ + W+ G A + L+
Sbjct: 475 IFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLH 517
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L M G+ N+ S+N +I + G+ +A++ EM P+ T +++
Sbjct: 544 ALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGL 603
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G + +++ + + P ++ Y +L++ + K DDA LLD+
Sbjct: 604 CKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDK---------- 653
Query: 129 QVTGQMIKGEFDDESNWQMV--EYVFDKLNCEGY 160
++G G +E W M+ +V +N EGY
Sbjct: 654 AISG----GIVPNERTWGMMVQNFVRQTVNLEGY 683
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E + S M G + S+N +I+A + G + ++ EM PN +
Sbjct: 502 GRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSY 561
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C AG V ++ E +E+ + G+ P ++ Y L+ K A LL+++
Sbjct: 562 NMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPN 621
Query: 122 NRISNIH 128
N+H
Sbjct: 622 ---ENVH 625
>gi|255661178|gb|ACU25758.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 352
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQ 133
+ + I QV Q
Sbjct: 283 SGVE-IDQVLYQ 293
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|255661148|gb|ACU25743.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 425
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|255661146|gb|ACU25742.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 426
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 11/209 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ L + G N+ S+N V++ R+E+A K EM C PN T
Sbjct: 250 GRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTF 309
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
++S C GLV+ + E +++ G P+ + Y LL + K + A ++ M
Sbjct: 310 NMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVS 369
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ + +S +T GE D +++ + DK G + YN +++ L
Sbjct: 370 RGCYPDIVSYNTLLTALCRNGEVD--VAIELLHQLKDK----GCSPVLISYNTVIDGLTK 423
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKL 205
G + A +LDE T +GL P++ ++ +
Sbjct: 424 AGKTKEALELLDEMTSKGLQPDIITYSTI 452
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 3/202 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L M G + ++ ++EA + +++A+K EM C P+ T VL+
Sbjct: 187 AVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGI 246
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNI 127
C G V+++ E + + S G P+ + Y ++L + RW+DA L++EM H N+
Sbjct: 247 CQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNV 306
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
VT M+ + V +++ G YN LL A +A +
Sbjct: 307 --VTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFV 364
Query: 188 DEATKRGLFPELFRHNKLVWSV 209
+ RG +P++ +N L+ ++
Sbjct: 365 ELMVSRGCYPDIVSYNTLLTAL 386
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 101/263 (38%), Gaps = 58/263 (22%)
Query: 6 ECQAILSRMSESGVARNSDS-------------FNAVIEAFRQGGRFEEAIKAYVEMEKV 52
C A++ ++ SG R +D+ +NA++ + G+ + A + +M
Sbjct: 106 PCAALIKKLCASG--RTADARRVLAASGPDVMVYNAMVAGYCGAGQLDAARRLVADMP-- 161
Query: 53 RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+P+ T ++ C G + +++ G LP V+ Y +LL K + + A
Sbjct: 162 -VEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQA 220
Query: 113 YGLLDEMHT--------------NRISNIHQVTGQM---------------------IKG 137
LLDEMH N I +V M +KG
Sbjct: 221 MKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKG 280
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
F E W+ E + +++ +G + +N L+ L GL E A VL++ + G P
Sbjct: 281 LFTAE-RWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTP 339
Query: 198 ELFRHNKLVWSV----DVHRMWE 216
+N L+ + +H+ E
Sbjct: 340 NSLSYNPLLHAFCKQKKIHKAME 362
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L ++ + G + S+N VI+ + G+ +EA++ EM P+ T + S C
Sbjct: 398 LLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLC 457
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++E+ F +++ GI P+ Y +L K +A L M
Sbjct: 458 REDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYM 507
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 7/197 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N ++ A + G + AI+ +++ C P + V+ AG E+ E E+
Sbjct: 378 SYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEM 437
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S G+ P ++ Y + + + +R ++A ++ I + ++ G
Sbjct: 438 TSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRET 497
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
++ +F + G Y L+E L GL + A + + RG+ NK
Sbjct: 498 HNAID-LFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRGVV------NK 550
Query: 205 LVWSVDVHRMWEGGAYT 221
+ +M +G T
Sbjct: 551 KLMKKGSIKMLDGPTQT 567
>gi|255661154|gb|ACU25746.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 426
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ +I QV Q +
Sbjct: 283 XGV-DIDQVLYQTM 295
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++S G+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
Score = 36.6 bits (83), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ ++ M G+ NS +++ +I + + G+ + A + ++ D ++ +
Sbjct: 235 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQT 294
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE-MHTN 122
++ Y AGLV +K E+K +P + +L A + R ++A + + +
Sbjct: 295 MIVAYERAGLVAHAKRLLHELKRPDNIPRDIAIHIL----AGAGRIEEATWVFRQAIDAG 350
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160
+ +I V +MI F + V VFDK+ GY
Sbjct: 351 EVKDI-TVFERMIH-LFSKYKKYGNVVEVFDKMRGLGY 386
>gi|255661132|gb|ACU25735.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 426
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENRKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
turbinata]
Length = 441
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 101 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 160
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 161 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 220
Query: 123 RI 124
I
Sbjct: 221 NI 222
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 61/118 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + ++ P+
Sbjct: 30 GLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKXSGFXPDLVAY 89
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 90 NAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 147
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 170 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 229
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S G+ P+ + Y +++++ K + D A L ++ +
Sbjct: 230 NSMMMIYGKTLEHEKANNLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 289
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 290 SGVE-IDQILFQ 300
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 206 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGVEPNSITYS 265
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 266 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 325
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 326 DNIPRDTAIHILAG---AGRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 376
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 377 KYSNVIEVFDKMRGLGYFPD 396
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +L M + + N F A+I+ F + G EA Y EM + PN T
Sbjct: 758 GRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTY 817
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C G + ++K F + S G P V+ Y L+ + KS R +D L EM
Sbjct: 818 NSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTY 877
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G + + + VF+++ G + YN LL+ L G E
Sbjct: 878 QGLVGDAFTYNTLIHG-YCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIE 936
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A ++++ K + ++ +N ++
Sbjct: 937 KALVMVEDLQKSEMDVDIITYNIII 961
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 86/211 (40%), Gaps = 36/211 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +L M + + + +F A+I+ F + G +EA + Y EM + DPN T
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ C G + ++K+ F + S G P+V+ Y L++ + K D+ L
Sbjct: 285 NSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKL------ 338
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
F +++CEG+ + YN L+ +G
Sbjct: 339 ------------------------------FQRMSCEGFNADIFTYNTLIHGYCQVGKLR 368
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
A + R + P++ H L+ + V+
Sbjct: 369 VALDIFCWMVSRRVTPDIITHCILLHGLCVN 399
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 1/210 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L +M + G + +F +++ F R +A + M K +PN ++
Sbjct: 127 SVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGL 186
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G ++ + E E++ G+ V+ Y LL S RW DA +L +M I N
Sbjct: 187 CKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSI-NPD 245
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT + F + N + ++ ++ YN+++ L G A + D
Sbjct: 246 VVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFD 305
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+G FP + +N L+ RM + G
Sbjct: 306 LMASKGCFPNVVTYNTLISGFCKFRMVDEG 335
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 3/195 (1%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G + + +++ F QG RF+EA+ M+ PN V++ C
Sbjct: 664 KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 723
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVT 131
++ + E F ++ GI + Y L++ + S RW DA LL +M +I N+ T
Sbjct: 724 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 783
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+ F E N ++ ++ + YN+L+ G A + D
Sbjct: 784 ALI--DTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMV 841
Query: 192 KRGLFPELFRHNKLV 206
+G FP++ +N L+
Sbjct: 842 SKGCFPDVVTYNTLI 856
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 11/198 (5%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +SG N +N +I+ + G A++ EMEK + T +L+ C++G
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGR 226
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIH 128
++ +++ I P V+ + L+ V+ K D+A L EM N ++
Sbjct: 227 WSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNS 286
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ G + G D FD + +G + YN L+ + + ++
Sbjct: 287 IINGLCMHGRLYDAKK------TFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQ 340
Query: 189 EATKRGLFPELFRHNKLV 206
+ G ++F +N L+
Sbjct: 341 RMSCEGFNADIFTYNTLI 358
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 11/202 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E Q + M +S V N+ ++N++I GR +A K + M C PN T
Sbjct: 260 GNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTY 319
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S +C +VDE + FQ + G + Y L+ Y + + A + M +
Sbjct: 320 NTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVS 379
Query: 122 NR-----ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
R I++ + G + GE + +V+ FD + +G+ YN ++ L
Sbjct: 380 RRVTPDIITHCILLHGLCVNGEIES----ALVK--FDDMRESEKYIGIVAYNIMIHGLCK 433
Query: 177 LGLRERAARVLDEATKRGLFPE 198
E+A + G+ P+
Sbjct: 434 ADKVEKAWELFCRLPVEGVKPD 455
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 10/202 (4%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
C+ + SR S V F V+ + +F+ I Y +ME + + + ++
Sbjct: 593 CEMLQSRPIPSIV-----DFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIH 647
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+C + + ++ G PS++ LL + + NR+ +A L+D M
Sbjct: 648 CFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVP 707
Query: 127 IHQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G + D +N V Y +K +G YN L+ L G AA
Sbjct: 708 NVVIYNTVINGLCKNRDLNNALEVFYCMEK---KGIRADAVTYNTLISGLSNSGRWTDAA 764
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
R+L + KR + P + L+
Sbjct: 765 RLLRDMVKRKIDPNVIFFTALI 786
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/94 (19%), Positives = 46/94 (48%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +RM + GV+ + ++N +++ G+ E+A+ +++K D + T ++
Sbjct: 904 QKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQG 963
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101
C + E+ F+ + G+ P + Y +++
Sbjct: 964 LCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMIS 997
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 1/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ A+ M S + F ++ A R+E I +ME + +
Sbjct: 52 FEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTI 111
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ +C + + ++ G PS++ + LL + NR DA+ L+ M +
Sbjct: 112 LIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG 171
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
V +I G + + +++ +G G + YN LL L G A
Sbjct: 172 YEPNVVVYNTLIDG-LCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA 230
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
AR+L + KR + P++ L+
Sbjct: 231 ARMLRDMMKRSINPDVVTFTALI 253
>gi|302786806|ref|XP_002975174.1| hypothetical protein SELMODRAFT_10825 [Selaginella moellendorffii]
gi|300157333|gb|EFJ23959.1| hypothetical protein SELMODRAFT_10825 [Selaginella moellendorffii]
Length = 555
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/253 (20%), Positives = 102/253 (40%), Gaps = 36/253 (14%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N ++++ + G + A EME+ + P+ T +++VY G+V E + F ++K
Sbjct: 242 YNTLLKSCVESGNIQRAESLIAEMEREKQWPDHMTYGILMNVYATKGMVAEVRAMFDKLK 301
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI----KGEFDD 141
+ + P Y ML+ ++ +D G+ DEM N S +++G ++ + D
Sbjct: 302 NLAVFPKAAFYTMLIKASKQAGDFDRIPGIFDEMIANGCSVNERMSGMLVSCASSSQISD 361
Query: 142 ESNWQMVEYV-----------------------FDKLNCEGYGLGMR---------FYNA 169
E+ ++E V FD + E +R NA
Sbjct: 362 ETRLGVLECVKKIKPRLHELLSRLLVLAKEDDDFDDIASETTEFLLREITAPSRRPMCNA 421
Query: 170 LLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNK 229
+++ LG R A +L GL+ L +W +++ + A A+ W+
Sbjct: 422 VIDFCCVLGSRNAARAILSSGVSAGLYHGLHTTLPSLWQLNLRTLSFAAAECALEAWIES 481
Query: 230 MYEMFMMGEDLPQ 242
+ G++ P+
Sbjct: 482 LATAAENGDEFPE 494
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 89/186 (47%), Gaps = 1/186 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
R+ E+GV+ + +++A+I+ + + GR EA+ Y M K P+ + + +VY G
Sbjct: 89 RLRETGVSFDGVTYSAMIDLYGKAGRTAEAMDLYQTMRKNNWKPDLVSFGVIANVYSRVG 148
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
F++++ + I P+V+ + L+ ++ + A G+ DEM + + ++T
Sbjct: 149 DYQAILRLFRDMEQAEIKPNVVLFNTLIGTLGRAGKVTLAKGMFDEMASYGLEP-SEITL 207
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ + V+D + + + L + YN LL++ G +RA ++ E +
Sbjct: 208 SILIDMYTKVGALDKALDVYDTIKQKKWKLDVLVYNTLLKSCVESGNIQRAESLIAEMER 267
Query: 193 RGLFPE 198
+P+
Sbjct: 268 EKQWPD 273
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 1/193 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y+ + M ++ + N FN +I + G+ A + EM +P+E TL
Sbjct: 148 GDYQAILRLFRDMEQAEIKPNVVLFNTLIGTLGRAGKVTLAKGMFDEMASYGLEPSEITL 207
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +Y G +D++ + + IK V+ Y LL +S A L+ EM
Sbjct: 208 SILIDMYTKVGALDKALDVYDTIKQKKWKLDVLVYNTLLKSCVESGNIQRAESLIAEMER 267
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ H G ++ + + V +FDKL FY L++A G +
Sbjct: 268 EKQWPDHMTYG-ILMNVYATKGMVAEVRAMFDKLKNLAVFPKAAFYTMLIKASKQAGDFD 326
Query: 182 RAARVLDEATKRG 194
R + DE G
Sbjct: 327 RIPGIFDEMIANG 339
>gi|255661156|gb|ACU25747.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 426
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NXMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N ++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
Length = 333
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 92/207 (44%), Gaps = 1/207 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L+ M E GV + +F +I + G+ ++A++ + M R P+ T ++
Sbjct: 69 DAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLI 128
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G +D++ + + ++ S I P+ + Y +L+ + + + +DA+G LDEM I
Sbjct: 129 DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGIL 188
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+IKG + N + K+ + YN L+ A +
Sbjct: 189 PNIMTYNSIIKG-YCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFK 247
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVH 212
+L+ K + P++ +N L+ VH
Sbjct: 248 LLNMMEKEKVQPDVVTYNMLINGFSVH 274
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 16/180 (8%)
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
P+ V+ +C AGL+ ++ E+ G LP V+ Y LL K R DA GL
Sbjct: 14 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 73
Query: 116 LDEMHTNRISN-----IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
L+EM + + G I+G+ D +FD + + + YN L
Sbjct: 74 LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQ------LFDTMLNQRLRPDIVTYNTL 127
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
++ + G ++A + D+ R +FP N + +S+ + E G +L++M
Sbjct: 128 IDGMCRQGDLDKANDLWDDMHSREIFP-----NHVTYSILIDSHCEKGQVEDAFGFLDEM 182
>gi|449435037|ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Cucumis sativus]
Length = 519
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 5/208 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ I + G+ +N++S N +++ + + E+A + Y+E+ K PN T
Sbjct: 185 AGQWENAVRIFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLEL-KSHIAPNANT 243
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +C +DE+ +E+K G P V+ Y ++ Y ++ Y LLDEM
Sbjct: 244 FNMFIHGWCKVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMD 303
Query: 121 TNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+N+ +T I ++ + +++ GY FYN L+ L G
Sbjct: 304 AQGCPANV--ITYTTIMCSLTKSEEFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGK 361
Query: 180 RERAARVLD-EATKRGLFPELFRHNKLV 206
A V + E + + P +N ++
Sbjct: 362 VREAIHVFEVEMPSKSVLPNTSTYNSMI 389
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-VEMEKVRCDPNERTLE 62
++E I RM +G ++ +N +I + G+ EAI + VEM PN T
Sbjct: 327 FEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYN 386
Query: 63 AVLSVYCFAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWD-DAYGLLDEM 119
+++++YC +++ + +E+ KS P V Y LL ++ + D D LLDEM
Sbjct: 387 SMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLDEM 445
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M G N ++ ++ + + FEEA++ M+ +P+ ++
Sbjct: 298 LLDEMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAERMKSAGYEPDTLFYNCLIHTLG 357
Query: 70 FAGLVDESKEQFQ-EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
AG V E+ F+ E+ S +LP+ Y ++A+Y + R + A LL+EM +
Sbjct: 358 RAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKS 411
>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 770
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + M NS +F+A+I+ F + G EE EMEK+ + + A++
Sbjct: 182 EAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALI 241
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S +C G ++ KE F E+ + P+V+ Y L+ K +W +A +LD M ++
Sbjct: 242 SGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVR 301
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V ++ V D + G YNA++ L G + A
Sbjct: 302 P-DVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALG 360
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+L+ K+G P++ ++ LV
Sbjct: 361 ILETMAKKGKKPDVVTYSTLV 381
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 84/204 (41%), Gaps = 1/204 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+KE +L M+ V + ++ + + + GR +AIK M K +PN T A
Sbjct: 285 WKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNA 344
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ C G VD++ + + G P V+ Y L+ + D+A LL+ + +
Sbjct: 345 IINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKE 404
Query: 124 ISNIHQVTG-QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
V ++ E + + + V+ + G+ + YN L++ G +
Sbjct: 405 FHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTK 464
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A + +A G+ P + L+
Sbjct: 465 ALELWKDAVDSGISPNAATYTVLI 488
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 94/197 (47%), Gaps = 1/197 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L + + G N +FN +++ F Q G +A+ + M++ P+ + V++
Sbjct: 115 GVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGL 174
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C + E+KE F+E+K P+ + + L+ + K+ ++ +GLL+EM +
Sbjct: 175 CKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDV 234
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
V +I G F + + + + +F+++ + + Y+ L+ AL + AA++LD
Sbjct: 235 FVYSALISG-FCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLD 293
Query: 189 EATKRGLFPELFRHNKL 205
T + P++ + L
Sbjct: 294 TMTGCKVRPDVVAYTVL 310
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 50/106 (47%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G N ++N +I+ + G+ +A++ + + PN T +++ C +
Sbjct: 437 MVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQM 496
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ +K F + ++SG P+V Y L+A + + + A L EM
Sbjct: 497 LSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEM 542
>gi|255661176|gb|ACU25757.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 426
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQHRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKLRS 282
Query: 122 NRISNIHQVTGQ 133
+ + I QV Q
Sbjct: 283 SGVE-IDQVLYQ 293
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQHRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAVLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 2/220 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + RM + S+NA++ + G F +A K Y+ M+ + P+ T
Sbjct: 90 GKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTH 149
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ +C G + + G + + YC +++ + K N +AY L DEM
Sbjct: 150 TIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLK 209
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I ++I + N Q E +F K+ G + +N ++ L G +
Sbjct: 210 QGICPDILTFNKLIH-VLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAID 268
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVH-RMWEGGAY 220
AAR+L+ GL P++ +N L+ H ++ E Y
Sbjct: 269 EAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECY 308
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 85/209 (40%), Gaps = 1/209 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL M G+ + ++N ++ + + + + + M + C PN T ++ +C
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC 542
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
V E+ E F+E+K+ G+ P ++ C L+ + D AY L + +
Sbjct: 543 KDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYST 602
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ F + N M E +F K+ Y ++++ G + A L E
Sbjct: 603 AIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLE 662
Query: 190 ATKRGLFPELFRHNKLVWSVDV-HRMWEG 217
+GL P K++ + V HR+ E
Sbjct: 663 NISKGLVPSFTTCGKVLNCLCVTHRLSEA 691
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 6/211 (2%)
Query: 1 GGLYKE-CQA----ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
G YKE CQ + M + G+ + +FN +I + G +E+ K + ++ K
Sbjct: 189 SGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVC 248
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
PN T + C G +DE+ + I S G+ P V+ Y L+ + K ++ +A
Sbjct: 249 PNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECY 308
Query: 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
L +M N ++ T I F Q + + +G+ Y++L+ L
Sbjct: 309 LHKM-VNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLC 367
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G RA V EA ++G + +N LV
Sbjct: 368 NDGDMNRAMAVFYEAMEKGFKHSIILYNTLV 398
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 84/205 (40%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L + G+ + S+N +I F + + EA +M +PNE T
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTY 324
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C AG++ + + ++ G +P Y L+ + A + E
Sbjct: 325 NTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAME 384
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + ++KG Q ++ + D + G + YN ++ L +G
Sbjct: 385 KGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMME-HGCSPDIWTYNLVVNGLCKMGCLS 443
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +L++A +G P++F N L+
Sbjct: 444 DANGILNDAIAKGCIPDIFTFNTLI 468
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 78/191 (40%), Gaps = 1/191 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ E G + +N +++ + G +A++ +M + C P+ T V++
Sbjct: 377 AVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGL 436
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G + ++ + + G +P + + L+ Y K D A +LD M ++ I+
Sbjct: 437 CKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDV 496
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G +V+ F + +G + YN L+E+ A +
Sbjct: 497 ITYNTLLNGLCKARKLDNVVD-TFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFK 555
Query: 189 EATKRGLFPEL 199
E RGL P++
Sbjct: 556 EMKTRGLTPDI 566
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
FN +I AF A K + +M C P+ T ++ YC G +D + E
Sbjct: 605 FNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENI 664
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
S G++PS +L ++R +A +++ M N I
Sbjct: 665 SKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGI 703
>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 825
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 1/193 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +A+L M GV N ++NA+I Q GRF++ K +ME R P+ T V+
Sbjct: 214 EAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVV 273
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G V + E G+ V+ Y L+ Y K A +L M NR++
Sbjct: 274 HGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVN 333
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
Q ++I G F ++ G +N+L+ +G R+ A R
Sbjct: 334 PGVQTFNEVIHG-FCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALR 392
Query: 186 VLDEATKRGLFPE 198
+LD + G+ P+
Sbjct: 393 LLDLMEEYGVLPD 405
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 14/226 (6%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG K +L M + V +FN VI F GG+ +A+ +M PN T
Sbjct: 314 GGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVT 373
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++S C G + ++ G+LP Y + + + ++A+ L +
Sbjct: 374 FNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLP 433
Query: 121 TNRISNIHQVTGQMIKGEF---DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
I + + ++ G D +S + ++E K+ E + YN L++ L +
Sbjct: 434 MKGIKAHNVIYTSLVHGYCQVGDIDSAFGLME----KMASENCMPDVHTYNTLIDGLCKV 489
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV----WS---VDVHRMWE 216
+RA +LD+ K+G+ P N L+ W D +M+E
Sbjct: 490 KRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYE 535
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 8/214 (3%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G + S+ +I+ GR ++A + + +M + C P T +L C V E+
Sbjct: 156 GACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEA 215
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ E+ + G++P+V+ Y L+ + R+DD LL++M R S Q++ G
Sbjct: 216 EALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHG 275
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG-LF 196
+ + + + +G L + YNAL+ +C G +AA + + KR +
Sbjct: 276 LCKHGKVGHGAKVLHEAIG-KGVALEVLTYNALING-YCKGGDMKAALDVLQLMKRNRVN 333
Query: 197 PELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
P + N++ +H GG +L +M
Sbjct: 334 PGVQTFNEV-----IHGFCCGGKVHKAMAFLTQM 362
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 2/195 (1%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER-TLEAVLSVYCFA 71
RM E+G+A ++ ++N ++ + G A +V+M + +R + ++ C A
Sbjct: 115 RMREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAA 174
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131
G +D++ F ++ P V Y +LL K R +A LL EM N+ + VT
Sbjct: 175 GRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEM-VNKGVVPNVVT 233
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+ G E + V + +K+ + + Y ++ L G A+VL EA
Sbjct: 234 YNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAI 293
Query: 192 KRGLFPELFRHNKLV 206
+G+ E+ +N L+
Sbjct: 294 GKGVALEVLTYNALI 308
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 76/180 (42%), Gaps = 15/180 (8%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M + G+ + +FN +I+ + +A K Y +M C P+++T +S
Sbjct: 498 LLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDW 557
Query: 70 FAGLVDESKEQFQ--EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN- 126
F G E E+ +G+ P V Y ++ Y + + A+ +M + I
Sbjct: 558 FEGATKEENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPD 617
Query: 127 -------IHQVTGQMIKGEFDDESNWQMVEY-----VFDKLNCEGYGLGMRFYNALLEAL 174
++ + + FD+E W+MV+ +F+++ G+ Y ALL L
Sbjct: 618 CTTYSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGL 677
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 14/125 (11%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG- 72
M E+GV + +++NA+I+A+ G E+A A+V+M V DP+ T +L+ C
Sbjct: 574 MHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDD 633
Query: 73 -----------LVD--ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+VD +E F+++ S P + Y LL R ++ LL +M
Sbjct: 634 SDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLLLKM 693
Query: 120 HTNRI 124
N I
Sbjct: 694 QGNSI 698
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 85/216 (39%), Gaps = 21/216 (9%)
Query: 25 SFNAVIEAFRQGG----RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
S NA + A+ G R + ++ M K PN T +++ +C L+ +++
Sbjct: 53 SHNAALIAYSSRGSRAPRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAA 112
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT------NRISNIHQVTGQM 134
++ +G+ P Y L+ ++ A GL +M +R S + G
Sbjct: 113 LVRMREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLC 172
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
G DD VF K++ G+ Y LL+ L + A +L E +G
Sbjct: 173 AAGRIDDACR------VFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKG 226
Query: 195 LFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+ P + +N L+ + + G + ++ L KM
Sbjct: 227 VVPNVVTYNALIGG-----LCQEGRFDDVTKLLEKM 257
>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 641
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 92/222 (41%), Gaps = 15/222 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + +L M G A + ++EA +GG F A++A + C +
Sbjct: 122 GLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNC 181
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
V+S C G VDE E +++ S G P ++ Y +L + RWDD L+ EM
Sbjct: 182 NLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVR 241
Query: 120 --HTNRISNIHQVTGQMIK-GEFDD--ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
++ + + + + G F+ E+ QM E+ G +R Y +++ +
Sbjct: 242 VGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEH--------GCTPDLRMYATIIDGI 293
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
G E A +L GL P + +N ++ + WE
Sbjct: 294 CKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWE 335
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 11/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
ILSRM G+ N +N V++ R+EEA EM + C ++ T ++ +C
Sbjct: 305 ILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFC 364
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
GLVD E +++ G +P V+ Y ++ + K D+A LL M N I
Sbjct: 365 QNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTI 424
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
S + G + + E W + + + +G +N L+ + GL E+A
Sbjct: 425 SYTIVLKG-LCRAE-----RWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAI 478
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+L + G P+L ++ ++
Sbjct: 479 ELLKQMLVNGCSPDLISYSTVI 500
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 96/210 (45%), Gaps = 16/210 (7%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++E + +L+ M + + +FN +++ F Q G + I+ +M + C P+ T
Sbjct: 334 WEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTT 393
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---- 119
V++ +C GLVDE+ + + + G P+ + Y ++L ++ RW DA L+ M
Sbjct: 394 VINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQG 453
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
N ++ + KG + Q +E + ++ G + Y+ +++ L G
Sbjct: 454 CLPNPVTFNTLINFMCKKGLVE-----QAIE-LLKQMLVNGCSPDLISYSTVIDGLGKAG 507
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWS 208
E A +L+ +G+ P N +++S
Sbjct: 508 KTEEALELLNVMINKGITP-----NTIIYS 532
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M G N +FN +I + G FE+ +A +M + C P+ R ++ C
Sbjct: 235 LMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGIC 294
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G + + + + S G+ P+V+CY +L + RW++A LL EM
Sbjct: 295 KDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEM 344
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E +L MS G N+ S+ V++ + R+ +A + M + C PN T
Sbjct: 402 GLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTF 461
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C GLV+++ E +++ +G P ++ Y ++ K+ + ++A LL+ M
Sbjct: 462 NTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMIN 521
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
I+ + M E + +FD + YNA++ +L
Sbjct: 522 KGITPNTIIYSSMASA-LSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSL 573
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 76/174 (43%), Gaps = 1/174 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ L + G +S + N V+ A + G +E ++ ++ C+P+ +
Sbjct: 156 GGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVS 215
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AVL C A D+ +E E+ G P+V + L+A ++ ++ + L +M
Sbjct: 216 YNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMP 275
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ + ++ +I G D + ++ + ++ G + YN +L+ L
Sbjct: 276 EHGCTPDLRMYATIIDGICKD-GHHEVANDILSRMPSYGLKPNVVCYNTVLKGL 328
>gi|410110087|gb|AFV61123.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
urticoides]
Length = 423
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 84 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 143
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 144 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 203
Query: 123 RI 124
I
Sbjct: 204 NI 205
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 61/118 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + ++ P+
Sbjct: 13 GLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKSSGFTPDLVAY 72
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 73 NAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 130
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 153 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 212
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 213 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 272
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 273 SGVE-IDQILFQ 283
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N++I + + E+A EM+ +PN T
Sbjct: 189 LFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 248
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 249 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 308
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 309 DNIPRDTAIHILAG---AGRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 359
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 360 KYSNVVEVFDKMRGLGYFPD 379
>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 1/218 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+Y E ++L M E+ +S ++N ++ A+ + G +EA M + PN T
Sbjct: 336 AGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAIT 395
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ Y AG DE+ + F +K +G +P+ Y +L++ K +R ++ +L +M
Sbjct: 396 YTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMK 455
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+N ++ T I ++ + V VF ++ G+ +N L+ A G
Sbjct: 456 SNGCFP-NRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSE 514
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A+++ E T+ G + +N L+ ++ W G
Sbjct: 515 VDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSG 552
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 37/206 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR-FEEAIKAYVEMEKVRCDPNERT 60
G Y++ + RM E G + ++N +++ F + GR + + + EM +E T
Sbjct: 231 GKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFT 290
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
VLS GL+ E+K+ F E+KS G P + Y LL V+ K+ + +A +L EM
Sbjct: 291 CSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME 350
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N NC + YN L+ A G
Sbjct: 351 EN---------------------------------NCPADSVT---YNELVAAYARAGFS 374
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ AA V++ T++G+ P + ++
Sbjct: 375 KEAAVVIEMMTQKGVMPNAITYTTVI 400
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 23/216 (10%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE--- 58
G ++ + ++S M G S++ +++ + +GG Y+ +E++ NE
Sbjct: 547 GDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGN-------YLGIERIEEGINEGQI 599
Query: 59 -------RTLE-AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110
RTL A AG S+ F K G P ++ + +L+++ ++N +D
Sbjct: 600 FPSWMLLRTLLLANFKCRALAG----SERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYD 655
Query: 111 DAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
A G+L +H + + N VT + + E + L + YN +
Sbjct: 656 QAEGILQSIHEDGL-NPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTV 714
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
++ GL + A R+L E T+RG+ P +F +N V
Sbjct: 715 IKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFV 750
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ K + M G + D+FN +I A+ + G +A K Y EM + + T
Sbjct: 477 GMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTY 536
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+L+ G + ++KS G P+ Y ++L YAK + + + ++
Sbjct: 537 NALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINE 596
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+I + ++ F + E F GY M +N++L + +
Sbjct: 597 GQIFPSWMLLRTLLLANFKCRA-LAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYD 655
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A +L + GL P+L +N L+
Sbjct: 656 QAEGILQSIHEDGLNPDLVTYNSLM 680
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E +LS M+E G+ ++N + + G + E M K C PNE T
Sbjct: 722 GLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRPNELTF 781
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKS 86
+ V+ YC AG E+ + +IK+
Sbjct: 782 KMVVDGYCRAGKYSEAMDFVSKIKT 806
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 57/120 (47%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+Y + + IL + E G+ + ++N++++ + + G +A + +EK + P+ +
Sbjct: 653 MYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYN 712
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ +C GL+ E+ E+ GI P + Y ++ Y + + +++ M N
Sbjct: 713 TVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKN 772
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 84/209 (40%), Gaps = 6/209 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +++ +L M G+ + + + V+ A + G EA + E++ +P T
Sbjct: 266 GRSWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVT 325
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L V+ AG+ E+ +E++ + + Y L+A YA++ +A ++ EM
Sbjct: 326 YNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEA-AVVIEMM 384
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T + + +T + + +F + G YNA+L L
Sbjct: 385 TQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRS 444
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSV 209
++L + G FP N+ W+
Sbjct: 445 NEMIKMLCDMKSNGCFP-----NRATWNT 468
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 57/116 (49%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + IL + +S + + S+N VI+ F + G +EA++ EM + P T +
Sbjct: 691 KAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFV 750
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
S Y G+ E ++ + + + P+ + + M++ Y ++ ++ +A + ++ T
Sbjct: 751 SGYTAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKT 806
>gi|410110129|gb|AFV61144.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
pusilla]
Length = 381
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 55 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 114
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 115 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 174
Query: 123 RI 124
I
Sbjct: 175 NI 176
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 243
Query: 122 NRISNIHQVTGQ 133
+ I Q+ Q
Sbjct: 244 TGVE-IDQILFQ 254
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 52/94 (55%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++ +IE R+ + +AI + +++ P+ A+++V+ A L E++ E+K
Sbjct: 8 YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMK 67
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 68 TAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 101
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 39/200 (19%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 160 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 219
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++S+G+ + + ++ Y ++ A LL E+
Sbjct: 220 TIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVXYERAGLIAHAKRLLHELKRP 279
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 280 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 330
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 331 KYANVVEVFDKMRGLGYFPD 350
>gi|293332227|ref|NP_001169164.1| uncharacterized protein LOC100383014 [Zea mays]
gi|223975267|gb|ACN31821.1| unknown [Zea mays]
Length = 469
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 95/199 (47%), Gaps = 1/199 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
S+M G+ + +S+N VI+ F + G E A++ M++ PN T +++ Y
Sbjct: 208 FSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLK 267
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G V ++K + + G++P V+ + L+ +++ DDA+ EM + Q
Sbjct: 268 LGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQT 327
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+I G + +E + +K+ +G +NA + + + E+A ++ ++
Sbjct: 328 YNVLIHGLCSAGHVSKAIE-LLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDM 386
Query: 191 TKRGLFPELFRHNKLVWSV 209
++ G+ P+ + +N L+ ++
Sbjct: 387 SRYGVSPDSYTYNALIKAL 405
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 86/216 (39%), Gaps = 25/216 (11%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +A L + E G+ + +F ++I+ + ++A + EM + PN +T
Sbjct: 269 GNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTY 328
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C AG V ++ E ++K GI P + + + + + + A L ++M
Sbjct: 329 NVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSR 388
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+S +IK D+ + E + +E++ C+G ++
Sbjct: 389 YGVSPDSYTYNALIKALCDERRVDEAKEIIL-----------------AMESISCIGTKQ 431
Query: 182 RAA-RVLDEATKRGLFPE-------LFRHNKLVWSV 209
V+ TK G F E L R N + SV
Sbjct: 432 HTYWPVVGALTKMGRFSEAGMFMNKLHRKNAHLGSV 467
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%)
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
C P+ T ++ C G+VDE+ ++++ +GI P+V+ Y ML+ + ++R ++A
Sbjct: 6 CRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAV 65
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEF 139
+L+ M +S ++ G F
Sbjct: 66 CVLERMKEKGVSATEATYRSLVHGAF 91
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 101/217 (46%), Gaps = 6/217 (2%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+KE A+L+ M+ + + +FN +++ F + G+ EA+ M ++ +PN T +
Sbjct: 284 WKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSS 343
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ Y V E+++ F + + G P++ Y +L+ Y K+ R D+A L +EM
Sbjct: 344 LMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQG 403
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
++ + +I G F + + +F + G + Y+ LL+ G +A
Sbjct: 404 LTPNNVSYNTLIHG-FCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKA 462
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
R+ R + + N +++++ VH M + G +
Sbjct: 463 FRLF-----RAMQSTYLKPNLVMYTILVHAMCKSGNH 494
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 7/208 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + M G + ++N +I + G A +ME+ C PN T
Sbjct: 177 GEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTY 236
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C LV+E+ + F +K+ GI P + Y L+ K +RW +A LL+EM +
Sbjct: 237 STLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTS 296
Query: 122 -NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL--EALWCLG 178
N + +I VT ++ F E V + G + Y++L+ +LW
Sbjct: 297 LNIMPDI--VTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDV 354
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
+ R ++ +G P +F +N L+
Sbjct: 355 VEAR--KLFHVMITKGCKPNIFSYNILI 380
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 88/206 (42%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M+E GV N ++++++ + EA K + M C PN +
Sbjct: 317 GKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSY 376
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC A +DE+ + F E+ G+ P+ + Y L+ + + + +A L M T
Sbjct: 377 NILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCT 436
Query: 122 NRISNIHQV-TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N N+ + T ++ F + +F + + Y L+ A+ G
Sbjct: 437 N--GNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNH 494
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A ++ E +GL P + + ++
Sbjct: 495 KDARKLFSELFVQGLQPHVQLYTTII 520
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 6/233 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y ++ +M G++ N + + + F Q R + ++ K+ P T
Sbjct: 106 GQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVT 165
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ C G ++ E F ++ + G P V Y ++ K A GLL +M
Sbjct: 166 FTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKME 225
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I D + ++ +F + +G + Y +L++ L
Sbjct: 226 EAGCQPNMVTYSTLIDSLCRDRLVNEALD-IFSYMKAKGISPDIFTYTSLIQGLCKFSRW 284
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
+ A+ +L+E T + P++ N LV + EG A+ V L M EM
Sbjct: 285 KEASALLNEMTSLNIMPDIVTFNVLVDTF----CKEGKVSEALGV-LKTMTEM 332
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 77/205 (37%), Gaps = 6/205 (2%)
Query: 34 RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV 93
+ G ++ I +ME V PN TL ++ +C VD ++ G+ P++
Sbjct: 104 KMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTI 163
Query: 94 MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD 153
+ + L+ K + A L D+M +I G +
Sbjct: 164 VTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIING-LCKIGETAAAAGLLK 222
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHR 213
K+ G M Y+ L+++L L A + +G+ P++F + L+ +
Sbjct: 223 KMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFS 282
Query: 214 MWEGGAYTAISVWLNKMYEMFMMGE 238
W+ S LN+M + +M +
Sbjct: 283 RWKEA-----SALLNEMTSLNIMPD 302
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 49/111 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E Q + M +G + +++ +++ F + G +A + + M+ PN
Sbjct: 422 GKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMY 481
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
++ C +G ++++ F E+ G+ P V Y ++ K D+A
Sbjct: 482 TILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEA 532
>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 624
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ ILSRM G+ N +N V++ R+E+A + EM + C ++ T
Sbjct: 280 GHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTF 339
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C GLVD E +++ G +P V+ Y ++ + K D+A LL M +
Sbjct: 340 NILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPS 399
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++KG E W E + ++ +G +N ++ L GL E
Sbjct: 400 CGCKPNTISYTIVLKGLCSTE-RWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVE 458
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A +L + G P+L ++ ++
Sbjct: 459 QAIELLKQMLVNGCNPDLISYSTVI 483
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E +L M G N+ S+ V++ R+ +A + M + C PN T
Sbjct: 385 GLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTF 444
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C GLV+++ E +++ +G P ++ Y ++ K+ + ++A LL+ M
Sbjct: 445 NTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMIN 504
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
I+ + +T + E V +FD + YNA++ +L
Sbjct: 505 KGITP-NVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSL 556
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 78/215 (36%), Gaps = 26/215 (12%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+L M+ ++ +IE+ + G + A++ + +
Sbjct: 130 GRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNC 189
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V++ C G VDE E +++ G ++ Y +L + RW D L+DEM
Sbjct: 190 NLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEM-- 247
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+H+ QM + G +R Y +++ + G E
Sbjct: 248 ---VKVHEALSQMAQ---------------------HGCTPDIRMYATIIDGICKEGHHE 283
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A +L GL P + +N ++ + WE
Sbjct: 284 VANEILSRMPSYGLKPNVVCYNTVLKGICSADRWE 318
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR-------FEEAIK---AYVEMEK 51
G E +L ++ G + S+NAV++ R +E +K A +M +
Sbjct: 200 GCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQ 259
Query: 52 VRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111
C P+ R ++ C G + + E + S G+ P+V+CY +L ++RW+
Sbjct: 260 HGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEK 319
Query: 112 AYGLLDEMH 120
A LL EM+
Sbjct: 320 AEELLTEMY 328
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 41/238 (17%)
Query: 1 GGLYK-----ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
GGL K E A+ M++ G N + A+I+++ + G EEA++ + M+ +
Sbjct: 333 GGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFE 392
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
P+ T +++ C +G +D+ E F ++ G+ + M Y L+ K+ R +DA L
Sbjct: 393 PDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENL 452
Query: 116 LDEMHTN--------------------RISNIHQVTGQM---------------IKGEFD 140
+EM +I + G+M I G F
Sbjct: 453 FEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFK 512
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+ N + +++ +DK+ +G + + AL L G RA ++LD+ G+ PE
Sbjct: 513 EHKNEEAIKF-WDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPE 569
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E + RM E+G+ + ++N ++ E A K + M+ + P+ T
Sbjct: 199 GLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTY 258
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC AG + ++ E+F++++ + P + Y L+ +D L EM
Sbjct: 259 NIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEME- 317
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R I + ++ G + VF+ +N +G + Y AL+++ G E
Sbjct: 318 ERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSME 377
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+ + G P+ ++ LV
Sbjct: 378 EAMRLFERMKNEGFEPDAVTYSVLV 402
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 80/209 (38%), Gaps = 36/209 (17%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ C ++ M E G+ S++ VI + + EA + M + C N A
Sbjct: 306 FDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTA 365
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ Y G ++E+ F+ +K+ G P + Y +L+ KS R DD L
Sbjct: 366 LIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMEL-------- 417
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
FD +G + FY +L++ L G E A
Sbjct: 418 ----------------------------FDFCRNKGVAINAMFYASLIDGLGKAGRIEDA 449
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVH 212
+ +E +++G + + +N ++ ++ H
Sbjct: 450 ENLFEEMSEKGCARDSYCYNAIIDALAKH 478
>gi|410110091|gb|AFV61125.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
micrantha]
Length = 406
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 66 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 125
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 126 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 185
Query: 123 RI 124
I
Sbjct: 186 NI 187
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 58/109 (53%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L +M + V + ++ +IE R+ + +AI + +++ P+ A+++V+
Sbjct: 4 LQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGK 63
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 64 AKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 112
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 135 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 194
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 195 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 254
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 255 SGVE-IDQILFQ 265
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N++I + + E+A EM+ +PN T
Sbjct: 171 LFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 230
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 231 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 290
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 291 DNIPRDTAIHILAG---AGRIEEAT------YVFRQAIDAGEAKDITVFERMIHLLSKYK 341
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 342 KYSNVVEVFDKMRGLGYFPD 361
>gi|410110127|gb|AFV61143.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
origanoides]
Length = 408
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 100 LFREARSLISEMKTAGVMPNTTSYSTLLXMYVENKKFLEALSVFSEMREIKCLLDLXTCN 159
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 160 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 219
Query: 123 RI 124
I
Sbjct: 220 NI 221
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 62/118 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + +++ P+
Sbjct: 29 GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 88
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 89 NAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLXMYVENKKFLEALSVFSEM 146
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 169 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 228
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 229 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 288
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 289 SGVE-IDQILFQ 299
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 205 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 264
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 265 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 324
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 325 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAVDAGEVKDITVFERMIHLLSKYK 375
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 376 KYSNVVEVFDKMRGLGYFPD 395
>gi|255661180|gb|ACU25759.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 426
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCFLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQ 133
+ + I QV Q
Sbjct: 283 SGVE-IDQVLYQ 293
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 17/174 (9%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRP 318
Query: 120 -HTNRISNIHQVTG------------QMIK-GEFDDESNWQMVEYVFDKLNCEG 159
+ R IH + G Q I GE D + ++ + Y+F K G
Sbjct: 319 DNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIYLFSKYKKYG 372
>gi|410110139|gb|AFV61149.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
salviifolia]
Length = 378
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 38 LFREARSLISEMKTAGVMPNTTSYSTLLSMYVENKKFLEALSVFSEMREIKCLLDLTTCN 97
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 98 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 157
Query: 123 RI 124
I
Sbjct: 158 NI 159
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 107 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 166
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 167 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 226
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 227 SGVE-IDQILFQ 237
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 46/81 (56%)
Query: 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM 98
+ +AI + +++ P+ A+++V+ A L E++ E+K++G++P+ Y
Sbjct: 4 YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 63
Query: 99 LLAVYAKSNRWDDAYGLLDEM 119
LL++Y ++ ++ +A + EM
Sbjct: 64 LLSMYVENKKFLEALSVFSEM 84
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 143 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 202
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 203 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 262
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 263 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAVDAGEVKDITVFERMIHLLSKYK 313
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 314 KYSNVXEVFDKMRGLGYFPD 333
>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
Length = 455
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L+ M +G++ N FN A+ + G ++A+ + +M + P+ +
Sbjct: 9 GALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSY 68
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C G VD+++ +F ++ + G+ P+++ + L+ ++W+ L EM
Sbjct: 69 GALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLN 128
Query: 122 NRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I NI V I E + + D + C G + YN L++ G
Sbjct: 129 VGIHPNI--VFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTI 186
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A+++L+ GL P F +N L+
Sbjct: 187 DEASKLLEGMVSVGLKPNSFSYNTLL 212
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 6/205 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ N FN ++ + GR E + +E + P+ + ++ +C AG
Sbjct: 126 MLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGT 185
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+DE+ + + + S G+ P+ Y LL Y K+ R D AY L +M +N I+
Sbjct: 186 IDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNT 245
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ G F + + E + +N G G+ YN +L L + A ++ +
Sbjct: 246 ILHGLFQTKRFSEAKELYLNMIN-SGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSK 304
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGG 218
GL + N + +++ + + +GG
Sbjct: 305 GL-----QLNIITFTIMIGALLKGG 324
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 17/209 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E Q ++ + GV + S+N +I+ G +EA K M V PN +
Sbjct: 149 GRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSY 208
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L YC AG +D + F+++ S+GI P V+ Y +L ++ R+ +A E++
Sbjct: 209 NTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEA----KELYL 264
Query: 122 NRISN--------IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
N I++ + + + K DE+ ++M F L +G L + + ++ A
Sbjct: 265 NMINSGTKWGIYTYNTILNGLCKSNCVDEA-FKM----FQSLCSKGLQLNIITFTIMIGA 319
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRH 202
L G +E A + GL P++ +
Sbjct: 320 LLKGGRKEDAMDLFAAIPANGLVPDVVTY 348
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ ++ M E+G + N ++N +I + G EEA EME P+ T A+++
Sbjct: 263 KKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIING 322
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTN 122
C G D++K E+ +G++P+V+ Y L+ + + D+A+ ++ EM N
Sbjct: 323 LCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPN 382
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+I+ + + G G S + ++ GY YN ++E +E
Sbjct: 383 KITYDNLIRGLCKLGRMGRASR------ILKQMTKIGYMADTMTYNLVIEGHLRQHNKEE 436
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A +L+E K G+ P ++ ++ ++
Sbjct: 437 AFLLLNEMRKGGISPNVYTYSIII 460
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L +M+ + + +N++I G+ +EAI+ Y EM + PN+ T ++ Y
Sbjct: 511 LKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSM 570
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
AG ++++++ ++ +SG+ P+ Y +L Y KS+ + L M + +++
Sbjct: 571 AGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRL 630
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
G +I + Q V + G Y +L+ E+A +LDE
Sbjct: 631 YGIVIH-NLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEM 689
Query: 191 TKRGLFPELFRHNKLV 206
K+G+ P + +N L+
Sbjct: 690 AKKGIEPGISCYNALI 705
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 86/198 (43%), Gaps = 2/198 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++LS + ++G+ +S + ++I F + E+A+ EM K +P A++ +
Sbjct: 649 SVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGF 708
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C + + ++ F I G+ P+ + Y L+ Y K+ DA L +EM T ++
Sbjct: 709 CKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDA 768
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
V + G + + Q ++ +++ GY + + +N L+ G + + L
Sbjct: 769 FVYSVLAAG-CSNSGDLQQALFITEEMIARGYAI-ISSFNTLVHGFCKRGKLQETVKFLH 826
Query: 189 EATKRGLFPELFRHNKLV 206
+ + P L +V
Sbjct: 827 VMMDKDIVPSLLTVENIV 844
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 95/240 (39%), Gaps = 36/240 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +L MS +G+ N ++ +I+ F + G +EA K EM PN+ T
Sbjct: 327 GRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITY 386
Query: 62 EAVLSVYCFAG-------------------------------LVDESKEQ----FQEIKS 86
+ ++ C G L +KE+ E++
Sbjct: 387 DNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRK 446
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
GI P+V Y +++ + + A GLL++M + + V +I G + E ++
Sbjct: 447 GGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISG-YCREGSFS 505
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ K+ E + YN+L+ L +G + A DE ++G P F + L+
Sbjct: 506 LACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLI 565
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 98/230 (42%), Gaps = 6/230 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL +M++ G ++ ++N VIE + EEA EM K PN T +++ C
Sbjct: 405 ILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLC 464
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + + +++ + G+ P+ Y L++ Y + + A L +M ++
Sbjct: 465 QIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLY 524
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G + + +EY +D++ +G+ Y L+ G E+A ++L +
Sbjct: 525 CYNSLIIGLSNVGKMDEAIEY-YDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQ 583
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239
GL P N +++ + ++ +S L M E +M ++
Sbjct: 584 MLNSGLNP-----NDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDN 628
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 84/204 (41%), Gaps = 1/204 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + +L +M SG+ N + ++E + + E+ M + P+ R
Sbjct: 572 GNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLY 631
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ +G + + I+ +G++P + Y L++ + K+ + A GLLDEM
Sbjct: 632 GIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAK 691
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I +I G F + +F+ + C+G Y L++ G
Sbjct: 692 KGIEPGISCYNALIDG-FCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIR 750
Query: 182 RAARVLDEATKRGLFPELFRHNKL 205
A + +E G+ P+ F ++ L
Sbjct: 751 DAIDLYNEMLTEGVAPDAFVYSVL 774
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 88/218 (40%), Gaps = 7/218 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M + G++ N +++ +I Q G E A +M PN ++S YC
Sbjct: 440 LLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYC 499
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + E +++ + P + CY L+ + + D+A DEM
Sbjct: 500 REGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDF 559
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
G +I G + N + E + ++ G Y +LE + E+ + L
Sbjct: 560 TYGGLIHG-YSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKS 618
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAY-TAISVW 226
++GL P+ N+L + + +H + G A+SV
Sbjct: 619 MLEKGLMPD----NRL-YGIVIHNLSSSGHMQAAVSVL 651
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +L +M G+ N+ + +I + + G F A + +M + P+
Sbjct: 467 GESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCY 526
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ G +DE+ E + E+ G P+ Y L+ Y+ + + A LL +M
Sbjct: 527 NSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLN 586
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ ++ + Q+++G F + N + V + +G R Y ++ L G +
Sbjct: 587 SGLNPNDFIYAQILEGYFKSD-NLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQ 645
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A VL K GL P+ + L+
Sbjct: 646 AAVSVLSVIEKNGLVPDSLIYGSLI 670
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 78/193 (40%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G N ++ +I + G E+A + +M +PN+ +L Y +
Sbjct: 549 MLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDN 608
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+++ + + G++P Y +++ + S A +L + N + + G
Sbjct: 609 LEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGS 668
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G F ++ + + D++ +G G+ YNAL++ A + + +
Sbjct: 669 LISG-FCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICK 727
Query: 194 GLFPELFRHNKLV 206
GL P + L+
Sbjct: 728 GLPPNCVTYTTLI 740
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 83/193 (43%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G+ + ++ A+I + GR ++A EM PN ++ + G
Sbjct: 304 MEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGN 363
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
DE+ + +E+ ++G+ P+ + Y L+ K R A +L +M
Sbjct: 364 ADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNL 423
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I+G + N + + +++ G + Y+ ++ L +G ERA+ +L++
Sbjct: 424 VIEGHL-RQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIAD 482
Query: 194 GLFPELFRHNKLV 206
GL P F + L+
Sbjct: 483 GLKPNAFVYAPLI 495
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 9/197 (4%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+S S R + +++ +++ GR + + + M+ + P+ R +L A
Sbjct: 164 LSGSDQGRRPVVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADA 223
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+D + ++ +GI P V Y L+ Y K + A +++EM S ++ VT
Sbjct: 224 LDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCS-LNVVTYN 282
Query: 134 MIKGEFDDESNWQMVEYVFD-KLNCEGYGL---GMRFYNALLEALWCLGLRERAARVLDE 189
+ G +E F K E YGL G Y A++ L G ++A +LDE
Sbjct: 283 TLIGGL---CRAGAIEEAFGYKKEMEDYGLVPDGFT-YGAIINGLCKRGRPDQAKCLLDE 338
Query: 190 ATKRGLFPELFRHNKLV 206
+ GL P + ++ L+
Sbjct: 339 MSCAGLMPNVVVYSTLI 355
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 41/238 (17%)
Query: 1 GGLYK-----ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
GGL K E A+ M++ G N + A+I+++ + G EEA++ + M+ +
Sbjct: 331 GGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFE 390
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
P+ T +++ C +G +D+ E F ++ G+ + M Y L+ K+ R +DA L
Sbjct: 391 PDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENL 450
Query: 116 LDEMHTN--------------------RISNIHQVTGQM---------------IKGEFD 140
+EM +I + G+M I G F
Sbjct: 451 FEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFK 510
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+ N + +++ +DK+ +G + + AL L G RA ++LD+ G+ PE
Sbjct: 511 EHKNEEAIKF-WDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPE 567
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E + RM E+G+ + ++N ++ E A K + M+ + P+ T
Sbjct: 197 GLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTY 256
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC AG + ++ E+F++++ + P + Y L+ +D L EM
Sbjct: 257 NIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEME- 315
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R I + ++ G + VF+ +N +G + Y AL+++ G E
Sbjct: 316 ERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSME 375
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+ + G P+ ++ LV
Sbjct: 376 EAMRLFERMKNEGFEPDAVTYSVLV 400
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 80/209 (38%), Gaps = 36/209 (17%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ C ++ M E G+ S++ VI + + EA + M + C N A
Sbjct: 304 FDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTA 363
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ Y G ++E+ F+ +K+ G P + Y +L+ KS R DD L
Sbjct: 364 LIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMEL-------- 415
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
FD +G + FY +L++ L G E A
Sbjct: 416 ----------------------------FDFCRNKGVAINAMFYASLIDGLGKAGRIEDA 447
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVH 212
+ +E +++G + + +N ++ ++ H
Sbjct: 448 ENLFEEMSEKGCARDSYCYNAIIDALAKH 476
>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
Length = 735
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 104/231 (45%), Gaps = 6/231 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M G++ N ++N +++ + R EA M + +C P+ T
Sbjct: 312 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC VD+ + F+ I G++ + + Y +L+ + +S + A L EM +
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVS 431
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + G ++ G D+ + +E +F+ L LG+ Y ++E + G E
Sbjct: 432 HGVLPDVMTYGILLDGLCDNGKLEKALE-IFEDLQKSKMDLGIVMYTTIIEGMCKGGKVE 490
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
A + +G+ P N + ++V + + + G+ + ++ L KM E
Sbjct: 491 DAWNLFCSLPCKGVKP-----NVMTYTVMISGLCKKGSLSEANILLRKMEE 536
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 92/206 (44%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ RM E+G + ++N+++ + G A+ +ME+ + T
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 231
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G +D + F+E+++ GI SV+ Y L+ K+ +W+D LL +M +
Sbjct: 232 STIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 291
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
I + +T ++ F E Q ++ ++ G + YN L++ +C+ R
Sbjct: 292 REIVP-NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG-YCMQNRL 349
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A +LD + P++ L+
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLI 375
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 13/204 (6%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M G+ + ++N+++ + G++ + +M PN T +L V+
Sbjct: 249 SLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVF 308
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G + E+ E ++E+ + GI P+++ Y L+ Y NR +A +LD M N+ S
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368
Query: 129 QVTGQMIKGEFDDESNWQMVE------YVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+IKG + MV+ VF ++ G Y+ L++ G +
Sbjct: 369 VTFTSLIKG-------YCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKL 421
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A + E G+ P++ + L+
Sbjct: 422 AEELFQEMVSHGVLPDVMTYGILL 445
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/198 (18%), Positives = 80/198 (40%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L ++ + G ++ +FN +I+ G+ EA+ M + C P+ T ++++
Sbjct: 144 SVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGI 203
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +G + + ++++ + V Y ++ + D A L EM T I +
Sbjct: 204 CRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSV 263
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+++G W + + + +N LL+ G + A +
Sbjct: 264 VTYNSLVRG-LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 322
Query: 189 EATKRGLFPELFRHNKLV 206
E RG+ P + +N L+
Sbjct: 323 EMITRGISPNIITYNTLM 340
>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 100/236 (42%), Gaps = 41/236 (17%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
CQ IL R S + FN VI+A+ + ++ A Y E+ + RC P E T +L
Sbjct: 135 CQWILYR---SSFQSDVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLK 191
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVM-------------------------------- 94
YC +GL+++++ F E++ G+ PS +
Sbjct: 192 AYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQP 251
Query: 95 ---CYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVTGQMIKGEFDDESNWQMVEY 150
Y +L+ ++ K+++ A L +EM + + NI T + F E + E
Sbjct: 252 STETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTA--LVNAFAREGLCEKAEE 309
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+F++L +G+ + YNAL+EA G AA + G P+ +N +V
Sbjct: 310 IFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMV 365
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 94/203 (46%), Gaps = 11/203 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + I ++ E G + ++NA++EA+ + G A + + M+ + C+P+ +
Sbjct: 302 GLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASY 361
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y GL ++++ F+E+K GI P++ + +LL+ Y+K+ +++E+H
Sbjct: 362 NIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHE 421
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ + V M+ G+F +E V + Y + YN L+
Sbjct: 422 SGLEPDTFVLNSMLNLYGRLGQFGK------MEEVLTAMESGPYATDISTYNILINIYGR 475
Query: 177 LGLRERAARVLDEATKRGLFPEL 199
G E+ + + L P++
Sbjct: 476 AGFFEKMEGLFQSLAAKNLKPDV 498
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 90/201 (44%), Gaps = 1/201 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ +AI + M + G+ ++ +NA I+ + G + A++ + M++ C P+ T
Sbjct: 197 GLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETY 256
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++++ A + + F E++S P++ Y L+ +A+ + A + +++
Sbjct: 257 TLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQE 316
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +++ + E +F + G YN +++A GL E
Sbjct: 317 DGHEPDVYAYNALMEAYSRAGFPYGAAE-IFSLMQHMGCEPDRASYNIMVDAYGRGGLHE 375
Query: 182 RAARVLDEATKRGLFPELFRH 202
A V +E + G+ P + H
Sbjct: 376 DAQAVFEEMKRLGITPTMKSH 396
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 57/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +C+ I++ + ESG+ ++ N+++ + + G+F + + ME + T
Sbjct: 406 AGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDIST 465
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++++Y AG ++ + FQ + + + P V+ + L Y++ + + +EM
Sbjct: 466 YNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKKLYTKCLEIFEEM 524
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 54/119 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ QA+ M G+ S ++ A+ + G + E+ + +P+
Sbjct: 371 GGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFV 430
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
L ++L++Y G + +E ++S + Y +L+ +Y ++ ++ GL +
Sbjct: 431 LNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSL 489
>gi|410110081|gb|AFV61120.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
camara]
Length = 381
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 54 LFREARSLISEMKTAGVXPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 113
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 114 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 173
Query: 123 RI 124
I
Sbjct: 174 NI 175
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 182
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 183 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 242
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 243 SGVE-IDQILFQ 253
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N++I + + E+A EM+ +PN T
Sbjct: 159 LFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 218
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 219 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 278
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 279 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 329
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 330 KYSNVVEVFDKMRGLGYFPD 349
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 94/200 (47%), Gaps = 1/200 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E I +RM+E G N ++N +I G+ EA+ +ME+ C PN T A++
Sbjct: 337 EALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALI 396
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ AG + + E + ++ ++G +P+V+ Y ++ V +S+ + A+ L+++M T+
Sbjct: 397 DGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCP 456
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
IKG + +F ++ G ++ YN +L+ L + A
Sbjct: 457 PNTVTFNTFIKG-LCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALE 515
Query: 186 VLDEATKRGLFPELFRHNKL 205
++ E ++G+ L +N +
Sbjct: 516 LVTEMEEKGMELNLVTYNTI 535
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 43/252 (17%)
Query: 3 LYKEC-----QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN 57
L +EC Q +L +M G++ + D F VI +R+ G E+A+K + + + C P
Sbjct: 89 LGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPT 148
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
+ +L + + +K G P+V Y +LL K+NR D A LL
Sbjct: 149 VKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLV 208
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC--EGYGLGMRF------YNA 169
EM KG D ++ V KL E L +RF YNA
Sbjct: 209 EMSN--------------KGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQPNVSVYNA 254
Query: 170 LLEALWCLGLRERAAR----VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
L+ +C RE + +L + ++G+ P + ++ ++ S+ G A++V
Sbjct: 255 LING-FC---REYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLS----GIGNVELALAV 306
Query: 226 WLNKMYEMFMMG 237
W +MF+ G
Sbjct: 307 WA----KMFVRG 314
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
++ + +++ +MS N+ +FN I+ GR E AI + +ME+ C PN +T
Sbjct: 439 MFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYN 498
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
VL + E+ E E++ G+ +++ Y + + ++++A LL +M
Sbjct: 499 EVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKM 555
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 1/202 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE +L +M E G+ N +++ VI + G E A+ + +M C PN T ++
Sbjct: 266 KEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSL 325
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ Y G V E+ + + G P+V+ Y L+ + +A + +M N
Sbjct: 326 MKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGC 385
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
S G +I G F + +++K+ G + Y +++ L + +A
Sbjct: 386 SPNVSTYGALIDG-FAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAW 444
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++++ + P N +
Sbjct: 445 SLIEKMSTDNCPPNTVTFNTFI 466
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 4/168 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M + G + N ++N V++ + R +EA++ EME+ + N T + +C
Sbjct: 481 LFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFC 540
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR--ISNI 127
G +E+ + ++ G+ P + Y L Y + A LLD++ + +
Sbjct: 541 NVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEV 600
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
T ++ G + + V Y DK+ EG L +NAL+ L+
Sbjct: 601 AAYT-SLLWGICNQIGVEEAVLY-LDKMLNEGICLNAATWNALVRGLF 646
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 95/231 (41%), Gaps = 11/231 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + R+ E G +N +++A RF+ Y M++ +PN T
Sbjct: 128 GLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTY 187
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L C VD + + E+ + G P V+ Y +++ +K + ++A L
Sbjct: 188 NILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQP 247
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N V +I G F E + V + ++ +G + Y+ ++ +L +G E
Sbjct: 248 NV-----SVYNALING-FCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVE 301
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
A V + RG P ++ L+ G A+++W N+M E
Sbjct: 302 LALAVWAKMFVRGCSPNVYTFTSLMKG----YFMRGRVLEALNIW-NRMAE 347
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE +++ M E G+ N ++N + F G+FEEA+K +M P+ T +
Sbjct: 511 KEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTL 570
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
YC G V + + ++ + G +P V Y LL ++A LD+M
Sbjct: 571 TYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEG 630
Query: 124 ISNIHQVTGQMIKGEFDD 141
I +++G F+
Sbjct: 631 ICLNAATWNALVRGLFNS 648
>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 2/183 (1%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ Q I + + V +S +++ ++E + + +A + + EM C P+ T +
Sbjct: 142 RKAQEIFDSIKDRFVP-DSKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIM 200
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ V C AG VDE+ E+ S+ P+ Y +L+ Y NR +DA EM N I
Sbjct: 201 VDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGI 260
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
V +I G F + + V V ++++C+G R +N +L +L G + A
Sbjct: 261 EPDVAVYNALI-GAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAY 319
Query: 185 RVL 187
RV
Sbjct: 320 RVF 322
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 91/196 (46%), Gaps = 2/196 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + V N +FN ++ A + +A + + + K R P+ +T +L +
Sbjct: 116 MDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSI-KDRFVPDSKTYSILLEGWGKDPN 174
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ +++E F+E+ S+G P ++ Y +++ V K+ R D+A G+++EM + +
Sbjct: 175 LPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSV 234
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ + E+ + F ++ G + YNAL+ A + RVL+E +
Sbjct: 235 LVHT-YGIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCK 293
Query: 194 GLFPELFRHNKLVWSV 209
G+ P N ++ S+
Sbjct: 294 GVTPNSRTFNIILSSL 309
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/197 (17%), Positives = 79/197 (40%), Gaps = 2/197 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E I++ M + ++ ++ + R E+A+ ++EME +P+
Sbjct: 207 AGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAV 266
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ +C A + E+ G+ P+ + ++L+ D+AY + M
Sbjct: 267 YNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRMI 326
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ T M+ F + + V+ + + + M + L+ L G
Sbjct: 327 --KVCEPDADTYTMMIKMFCERDELKKALKVWKYMKLKRFMPSMHTFQVLINGLCEKGDV 384
Query: 181 ERAARVLDEATKRGLFP 197
+A +L+E ++G+ P
Sbjct: 385 TQACVLLEEMIEKGIRP 401
>gi|410110135|gb|AFV61147.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rotundifolia]
Length = 440
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 101 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 160
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 161 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 220
Query: 123 RI 124
I
Sbjct: 221 NI 222
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 62/118 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + +++ P+
Sbjct: 30 GLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 89
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 90 NAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 147
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 170 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 229
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 230 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 289
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 290 SGVE-IDQILFQ 300
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 206 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 265
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 266 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 325
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 326 DNIPRDTAIHILAG---AGRIEEAT------YVFRQAIDAGEVKNIAVFERMIHLLSKYK 376
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 377 KYANVVEVFDKMRGLGYFPD 396
>gi|410110133|gb|AFV61146.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rhodocnemis]
Length = 345
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 37 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 96
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 97 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 156
Query: 123 RI 124
I
Sbjct: 157 NI 158
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 106 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 165
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 166 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 225
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 226 SGVE-IDQILFQ 236
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N++I + + E+A EM+ +PN T
Sbjct: 142 LFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 201
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 202 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 261
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 262 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 312
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 313 KYSNVVEVFDKMRGLGYFPD 332
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 46/81 (56%)
Query: 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM 98
+ +AI + ++++ P+ A+++V+ A L E++ E+K++G++P+ Y
Sbjct: 3 YSKAISIFSRLKRLGFMPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 62
Query: 99 LLAVYAKSNRWDDAYGLLDEM 119
LL +Y ++ ++ +A + EM
Sbjct: 63 LLTMYVENKKFLEALSVFSEM 83
>gi|410110113|gb|AFV61136.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
filifolia]
Length = 439
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 100 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 159
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 160 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 219
Query: 123 RI 124
I
Sbjct: 220 NI 221
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 62/118 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + +++ P+
Sbjct: 29 GLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 88
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 89 NAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 146
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 169 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 228
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 229 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 288
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 289 SGVE-IDQILFQ 299
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 205 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 264
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 265 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 324
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 325 DNIPRDTAIHILAG---AGRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 375
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 376 KXSNVVEVFDKMRGLGYFPD 395
>gi|242061532|ref|XP_002452055.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
gi|241931886|gb|EES05031.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
Length = 810
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 8/184 (4%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N V++ + GR+E+A M + C P+E T V+S C GLVD + E +++
Sbjct: 307 SYNTVMKGLCRDGRWEDAGTLIAGMVRKDCPPDEVTFNTVISYLCHRGLVDCAMEVVEQM 366
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--HTNRISNIHQVTGQMIKGEFDDE 142
G P Y L+ ++ DDA LL + N + + G +DD
Sbjct: 367 PKYGCKPDNFTYSALVNALSERGCVDDALELLRTIPWKPNTVCYRSVLKGLCRADRWDDV 426
Query: 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
+ E + ++LN + G+ +++ L GL + A VL E TK G P++ +
Sbjct: 427 GKL-VAEMIRNQLNLDEVTFGL-----IIDCLCQKGLVDYGAEVLREMTKFGCSPDIIIY 480
Query: 203 NKLV 206
N L+
Sbjct: 481 NSLI 484
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%)
Query: 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
RN ++N +++ + ++E+A K EM K C PNE T ++S C G V+ + E
Sbjct: 507 RNVVTYNYMLKGLCRAEQWEDAGKLVAEMVKDECLPNEVTFSTLISYLCQKGFVECAIEV 566
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
F+++ +P+V+ Y L+ + DDA LL++M
Sbjct: 567 FEKMPKYNCMPNVIIYSTLINGLSDQECVDDALKLLNDM 605
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 97/213 (45%), Gaps = 9/213 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + +L+ ++ SG A + ++N ++ + + GR +A + +M PN T
Sbjct: 150 GGRLADAERMLASLALSGSA-DVVTYNTLVAGYCREGRLNDARRLVADMPFA---PNSYT 205
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L C D+++E E+ SG P+ + + M++ ++ D A G+LD+M
Sbjct: 206 NSTLLKGLCSNKEWDDAEELLSEMIRSGCPPNDLTFGMIIHSLCQNGLADRAMGVLDQMS 265
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
R + V ++I + + ++FD++ C+ + YN +++ L G
Sbjct: 266 KCRCTRGVIVYNEIISC-LAELGRVEEALHLFDQMPCKP---DIFSYNTVMKGLCRDGRW 321
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHR 213
E A ++ ++ P+ N ++ S HR
Sbjct: 322 EDAGTLIAGMVRKDCPPDEVTFNTVI-SYLCHR 353
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++A ++ + R+E+A + EM + +C +E T ++ C GLVD + E F+++
Sbjct: 716 YSAALKGLCRAKRWEDARELIAEMFRKQCPLDEATFSMLIGSLCQNGLVDMATEVFEQMS 775
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G P+ + L+ Y++ R D+ LL M
Sbjct: 776 VYGCSPNRKIHSSLVNGYSEQRRVDEGLKLLSSM 809
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 4/193 (2%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++A ++ + R+E+A + +EM + C P+E T +++ C G ++ + E + +
Sbjct: 614 YSAALKGLCRAERWEDAGELILEMIRKNCLPDEVTFSILINNLCHKGFLESATEVSELML 673
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+P+V Y L+ +A+ R +DA LL M + + +KG W
Sbjct: 674 KYECMPNVFIYSSLINGFAEQYRAEDALQLLRNMPCEPDTICYSAA---LKG-LCRAKRW 729
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+ + ++ + L ++ L+ +L GL + A V ++ + G P H+ L
Sbjct: 730 EDARELIAEMFRKQCPLDEATFSMLIGSLCQNGLVDMATEVFEQMSVYGCSPNRKIHSSL 789
Query: 206 VWSVDVHRMWEGG 218
V R + G
Sbjct: 790 VNGYSEQRRVDEG 802
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N+ + +V++ + R+++ K EM + + + +E T ++ C GLVD E
Sbjct: 406 NTVCYRSVLKGLCRADRWDDVGKLVAEMIRNQLNLDEVTFGLIIDCLCQKGLVDYGAEVL 465
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+E+ G P ++ Y L+ ++++ DDA L M R
Sbjct: 466 REMTKFGCSPDIIIYNSLINGFSENGSVDDALELFKNMSCKR 507
>gi|449494995|ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Cucumis sativus]
Length = 488
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 5/208 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ I + G+ +N++S N +++ + + E+A + Y+E+ K PN T
Sbjct: 154 AGQWENAVRIFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLEL-KSHIAPNANT 212
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +C +DE+ +E+K G P V+ Y ++ Y ++ Y LLDEM
Sbjct: 213 FNMFIHGWCKVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMD 272
Query: 121 TNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+N+ +T I ++ + +++ GY FYN L+ L G
Sbjct: 273 AQGCPANV--ITYTTIMCSLTKSEEFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGK 330
Query: 180 RERAARVLD-EATKRGLFPELFRHNKLV 206
A V + E + + P +N ++
Sbjct: 331 VREAIHVFEVEMPSKSVLPNTSTYNSMI 358
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-VEMEKVRCDPNERTLE 62
++E I RM +G ++ +N +I + G+ EAI + VEM PN T
Sbjct: 296 FEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYN 355
Query: 63 AVLSVYCFAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWD-DAYGLLDEM 119
+++++YC +++ + +E+ KS P V Y LL ++ + D D LLDEM
Sbjct: 356 SMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLDEM 414
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M G N ++ ++ + + FEEA++ M+ +P+ ++
Sbjct: 267 LLDEMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAERMKSAGYEPDTLFYNCLIHTLG 326
Query: 70 FAGLVDESKEQFQ-EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
AG V E+ F+ E+ S +LP+ Y ++A+Y + R + A LL+EM +
Sbjct: 327 RAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKS 380
>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Cucumis sativus]
Length = 606
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 1/208 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + + M + G ++ + N + F + R EEA + + ME+ PN +
Sbjct: 381 GMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSF 440
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +YC E++ F+ ++ G PSV+ Y + Y K + ++AY L++EM
Sbjct: 441 SILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQE 500
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I GE N +F+++ G + Y ++ L G +
Sbjct: 501 RGLMPDTYTYTSLIDGE-RASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRAD 559
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
A ++ DE K G+ P+ ++ L+ S+
Sbjct: 560 EAFKLYDEMNKEGIVPDDGIYSSLIASL 587
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E + + M + G A + ++NA IE + + G+ EEA K EM++ P+ T +
Sbjct: 453 FAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTS 512
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---- 119
++ +G VD + E F E+ G+ +V+ Y ++++ +K R D+A+ L DEM
Sbjct: 513 LIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEG 572
Query: 120 -------HTNRISNIHQVTGQMIKG 137
+++ I+++H+V G ++ G
Sbjct: 573 IVPDDGIYSSLIASLHKV-GPLVSG 596
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 1/174 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + +L M E GVA N SF+ +I+ + + F EA + + MEK P+ T A
Sbjct: 419 EEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAF 478
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ YC G ++E+ + E++ G++P Y L+ S D A L +EM +
Sbjct: 479 IERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGL 538
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
N + VT +I + ++D++N EG Y++L+ +L +G
Sbjct: 539 -NRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVG 591
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K + M+E + N+ ++ A+I + G + A +M+ D N
Sbjct: 311 GNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIF 370
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC G++DE+ ++ G ++ + + +SNR ++A LL M
Sbjct: 371 NTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEE 430
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ + V+ ++ + E N+ +F + +G + YNA +E G E
Sbjct: 431 RGVAP-NVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKME 489
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++++E +RGL P+ + + L+
Sbjct: 490 EAYKLINEMQERGLMPDTYTYTSLI 514
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 11/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
ILS M ++ V N ++ +IE + + + EEA K + EM K +P+ ++++ C
Sbjct: 249 ILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNC 308
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRI 124
G + + F E+ ++P+ Y L+ K+ A ++++M + NR+
Sbjct: 309 KFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRV 368
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ G KG D+ Q + + +G+ + N + RE A
Sbjct: 369 IFNTLMDGYCKKGMIDEALRLQNI------MQQKGFEIDAFTCNIIASGFCRSNRREEAK 422
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
R+L +RG+ P + + L+
Sbjct: 423 RLLLTMEERGVAPNVVSFSILI 444
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 86/232 (37%), Gaps = 36/232 (15%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEA----------------------IK 44
C L +M +SG+ S+ AV++ + G A +
Sbjct: 176 CVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLN 235
Query: 45 AYVE-------------MEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP 91
Y+E MEK D N T ++ Y + ++E+++ F E+ GI P
Sbjct: 236 GYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEP 295
Query: 92 SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYV 151
V Y ++ K A+ L DEM R+ G +I G + E +
Sbjct: 296 DVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGAC-KAGEMKAAEMM 354
Query: 152 FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+ + +G + +N L++ G+ + A R+ + ++G + F N
Sbjct: 355 VNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCN 406
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 104/227 (45%), Gaps = 6/227 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + + M G+A ++ +++++I+ F + R EA + M C+PN T ++
Sbjct: 332 EAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILI 391
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ YC A VD F EI S G++ + Y L+ + +S + + A L EM + +
Sbjct: 392 NSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVP 451
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G ++ G D+ + +E +F+K+ LG+ YN ++ + + A
Sbjct: 452 PSVVTYGILLDGLCDNGELQKALE-IFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWS 510
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ + +G+ P++ +N ++ + + G+ + + KM E
Sbjct: 511 LFCSLSVKGVKPDVLTYNVMIGG-----LCKKGSLSEADMLFRKMKE 552
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ + M G+ + +++++I GR+++ K EM PN T A++ V+
Sbjct: 265 SLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVF 324
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G + E+KE + E+ + GI P + Y L+ + K NR +A +LD M ++ +
Sbjct: 325 VKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLM-VSKGCEPN 383
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT ++ + +F +++ +G YN L++ G A +
Sbjct: 384 IVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQ 443
Query: 189 EATKRGLFPELFRHNKLV 206
E RG+ P + + L+
Sbjct: 444 EMVSRGVPPSVVTYGILL 461
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A++ RM E N + N +I GR EA+ M K C+ NE T
Sbjct: 153 GRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITY 212
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
VL+ C +G + + F++++ I SV+ Y +++ K DDA L +EM
Sbjct: 213 GPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEM 272
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I V I G ++ W + ++ + ++AL++ G
Sbjct: 273 KGIKA-DVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLL 331
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + +E RG+ P+ ++ L+
Sbjct: 332 EAKELYNEMVARGIAPDTITYSSLI 356
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 82/198 (41%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+++ R + G N+ +F+ +I F GR EA+ M +++ PN T+ +++
Sbjct: 125 SVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGL 184
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G V E+ + G + + Y +L KS A L +M I
Sbjct: 185 CLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKA-S 243
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
V ++ + N +F+++ +G + Y++++ L G + A++L
Sbjct: 244 VVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLR 303
Query: 189 EATKRGLFPELFRHNKLV 206
E R + P + + L+
Sbjct: 304 EMIGRNIIPNVVTFSALI 321
>gi|302769109|ref|XP_002967974.1| hypothetical protein SELMODRAFT_88078 [Selaginella moellendorffii]
gi|300164712|gb|EFJ31321.1| hypothetical protein SELMODRAFT_88078 [Selaginella moellendorffii]
Length = 376
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 17/212 (8%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E A+L M+E G + +N +I+ + G+ EEA + M K C P T +
Sbjct: 80 FSEALAVLDVMAERGCIPPAIVYNQLIDGLCKAGKVEEAFELSTTMVKNGCSPTLYTYNS 139
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-- 121
+++ C G DE+++ QE+ SG P V+ Y +L+ + + A + DEM +
Sbjct: 140 LINGLCLQGKTDEARDFLQEMADSGYNPDVVTYTVLINSLRRDGNFKAAVDVFDEMVSKG 199
Query: 122 ----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+R S + + G E Q+V+ +K LG F+N L+
Sbjct: 200 GCVPDRASYMPLLIG------LCKEGCVQLVQEFLEKHRAR-LDLGSFFHNLLISTFSKH 252
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
G + A +V E PEL N + ++
Sbjct: 253 GKLDDARKVFRELAS----PELVHFNSFMSAL 280
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 3/212 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ +L +M E + ++ +++ F + +F EA+ M + C P
Sbjct: 43 GLLEQACNVLDKMLEGKYEATTFTYGRLVDGFLRLSKFSEALAVLDVMAERGCIPPAIVY 102
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C AG V+E+ E + +G P++ Y L+ + D+A L EM
Sbjct: 103 NQLIDGLCKAGKVEEAFELSTTMVKNGCSPTLYTYNSLINGLCLQGKTDEARDFLQEMAD 162
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF-YNALLEALWCLGLR 180
+ N VT ++ + N++ VFD++ +G + R Y LL L G
Sbjct: 163 SGY-NPDVVTYTVLINSLRRDGNFKAAVDVFDEMVSKGGCVPDRASYMPLLIGLCKEGCV 221
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
+ L++ R F HN L+ + H
Sbjct: 222 QLVQEFLEKHRARLDLGSFF-HNLLISTFSKH 252
>gi|255661182|gb|ACU25760.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 426
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMKTAGVIPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 60/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + ++ P+
Sbjct: 23 GLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKNSGYTPDLVAY 82
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ V+ A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 83 NAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTMYVENKKFLEALSVFSEM 140
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 283 SGVE-IDQILFQ 293
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N++I + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 318
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 319 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 369
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 370 KYANVVEVFDKMRGLGYFPD 389
>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
Length = 1202
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 102/243 (41%), Gaps = 42/243 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + IL R G+ N +N +I+ + + G A MEK P+
Sbjct: 741 GQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAY 800
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G ++ ++++ ++K G+ PSV Y +L+ Y + +D + LL EM
Sbjct: 801 NCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMED 860
Query: 122 N-RISNI--------------HQVTGQMIKGEFDD-----------------------ES 143
N + N+ + Q++K + +D E
Sbjct: 861 NGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIED 920
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
++ E +F K G L + YN L++ L G A +L E +++GL P++F +N
Sbjct: 921 AFRFSEEMFKK----GIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYN 976
Query: 204 KLV 206
L+
Sbjct: 977 SLI 979
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 22/225 (9%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G+ N ++N +I+ G+ EA +E+ + P+ T +++S Y FAG
Sbjct: 928 MFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGN 987
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN--RWDDAYGLL----DEMHTNRISNI 127
V ++E+K+SGI P++ Y +L+++ K +G + D + N + +
Sbjct: 988 VQRCIALYEEMKTSGIKPTLKTYHLLISLCTKEGIELTKKIFGEMSLQPDLLVYNGVLHC 1047
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ V G M K F+ + QM+E + GL YN+L+ +G ++
Sbjct: 1048 YAVHGDMDKA-FNLQK--QMIE--------KSIGLDKTTYNSLILGQLKVGKLCEVRSLI 1096
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
DE R + PE + + V E Y VW +M E
Sbjct: 1097 DEMKAREMEPE-----ADTYDIIVKGHCEMKDYMGAYVWYREMQE 1136
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 1/183 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G+ +SDS +++ + +F I ++ + + P++ + V +
Sbjct: 512 GIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKG 571
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
E F +K I P+V Y +L+ K + DA L DEM R+ +I G
Sbjct: 572 LELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDG 631
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
D N + V +++ + + +N LL+ L+ G+ E A VL E +G P
Sbjct: 632 YCKD-GNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVP 690
Query: 198 ELF 200
+ F
Sbjct: 691 DAF 693
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 81/184 (44%), Gaps = 1/184 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I+ + + G E++ K M+ +P+ T +L AG+V++++ E+
Sbjct: 624 TYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEM 683
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
K G +P + +L Y+ +++ D A G+ E + ++ T ++ E
Sbjct: 684 KDQGFVPDAFTFSILFDGYSSNDKADAALGVY-ETAVDSGLKMNAYTCSILLNALCKEGQ 742
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ E + + +G YN +++ G A +D K+G+ P+ +N
Sbjct: 743 IEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNC 802
Query: 205 LVWS 208
L+ +
Sbjct: 803 LIRT 806
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E Q + M + GV+ N +N +I+ G+ E+A + EM K + N T ++
Sbjct: 885 EAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLI 944
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
G + E+++ EI G+ P V Y L++ Y + L +EM T+ I
Sbjct: 945 DGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGI 1003
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 7/200 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +RM ++ +N +I+ + + ++A + + EM R P+ T ++ YC
Sbjct: 574 LFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYC 633
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++S + + +K+ I PS++ + LL K+ +DA +L EM
Sbjct: 634 KDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAF 693
Query: 130 VTGQMIKG-EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNA--LLEALWCLGLRERAARV 186
+ G +D+++ + Y GL M Y LL AL G E+A +
Sbjct: 694 TFSILFDGYSSNDKADAALGVYE----TAVDSGLKMNAYTCSILLNALCKEGQIEKAEEI 749
Query: 187 LDEATKRGLFPELFRHNKLV 206
L +GL P +N ++
Sbjct: 750 LGREMAKGLVPNEVLYNTMI 769
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 89/209 (42%), Gaps = 5/209 (2%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ +C +L M ++G N S+ +I +G + EA +ME PN R
Sbjct: 848 FDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNM 907
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ C G ++++ +E+ GI +++ Y L+ + + + +A +L E+
Sbjct: 908 LIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKG 967
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +I G + N Q +++++ G ++ Y+ L+ G+ E
Sbjct: 968 LKPDVFTYNSLISG-YRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLISLCTKEGI-ELT 1025
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVH 212
++ E + L P+L +N ++ VH
Sbjct: 1026 KKIFGEMS---LQPDLLVYNGVLHCYAVH 1051
>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
Length = 321
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 40/191 (20%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ M+E + + + +I+ Q G+ EA EME C P A+LS
Sbjct: 136 ALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWL 195
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C ++E+ + F+ + SGILP + + M++ Y + +R DDA LL +M +
Sbjct: 196 CKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSA------ 249
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR--FYNALLEALWCLGLRERAARV 186
GL R YN L++AL G A R+
Sbjct: 250 --------------------------------GLAPREVIYNTLIDALNRAGRVSEAYRL 277
Query: 187 LDEATKRGLFP 197
L E RGL P
Sbjct: 278 LQEMISRGLSP 288
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++L M SG +NA++ +G R EA K + M P+ T
Sbjct: 164 GKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTF 223
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC +D++ Q++KS+G+ P + Y L+ ++ R +AY LL EM +
Sbjct: 224 GMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMIS 283
Query: 122 NRISNIHQVTGQMIKGEFDDES 143
+S + M K + DD +
Sbjct: 284 RGLSPNSRTYALMRKQQTDDSN 305
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 85/224 (37%), Gaps = 35/224 (15%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+E G +F +++ + R +A + M + C PN ++ C G
Sbjct: 1 MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT-- 131
E+ + ++S G+ P+++ Y +L+ + K + A +L EM T R + VT
Sbjct: 61 SAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEM-TGRGHEPNHVTYN 119
Query: 132 ----GQMIKGEFDDESNW--QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G G+ DD M E K+ + YG Y L++ L G A
Sbjct: 120 TFLHGLCKYGKVDDALALFRAMTE---KKIRLDVYG-----YTTLIDGLCQAGKLAEAYS 171
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNK 229
+LDE G P + G Y AI WL K
Sbjct: 172 LLDEMENSGCVP------------------KPGCYNAILSWLCK 197
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + RM+ SG+ + +F ++ + +G R ++A+ +M+ P E
Sbjct: 198 GSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVI 257
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99
++ AG V E+ QE+ S G+ P+ Y ++
Sbjct: 258 YNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALM 296
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ +M V N+ +F +++ + G EA + + M + +P+ T
Sbjct: 260 GQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTY 319
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ YC +DE+++ F + G PSV Y +L+ + KS R ++A LL EM+
Sbjct: 320 SALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYD 379
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ +++G F Q+ + +F ++ G Y+ LL+ L G +
Sbjct: 380 RDLTPDTVTYSTLMQG-FCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLD 438
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+L + + P + +N L+
Sbjct: 439 EAFRLLKAMQESKIEPHICIYNILI 463
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 90/198 (45%), Gaps = 3/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M E G + ++N VI++ + R EA+ + EM PN T ++L +C
Sbjct: 198 LLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFC 257
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++E+ F+++ ++P+ + + +L+ K +A + + M N +
Sbjct: 258 NLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAY 317
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLD 188
++ G + +S + +FD + +G+ +R YN L+ C R A +L
Sbjct: 318 TYSALMDG-YCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILING-HCKSRRLNEAKTLLS 375
Query: 189 EATKRGLFPELFRHNKLV 206
E R L P+ ++ L+
Sbjct: 376 EMYDRDLTPDTVTYSTLM 393
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 84/198 (42%), Gaps = 3/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + + G A + ++ +I+ + G A++ +ME+ C P+ V+ C
Sbjct: 163 LFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLC 222
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+E+ F E+ GI P+V+ Y +L + + ++A L +M R +
Sbjct: 223 KDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQM-IGRNVMPNT 281
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLD 188
VT ++ E VF+ + G Y+AL++ +CL + + A ++ D
Sbjct: 282 VTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDG-YCLQSQMDEAQKLFD 340
Query: 189 EATKRGLFPELFRHNKLV 206
+G P + +N L+
Sbjct: 341 IMVGKGFAPSVRVYNILI 358
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 77/209 (36%), Gaps = 11/209 (5%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR--FEEAIKAYVEMEKVRCDPNERTL 61
Y ++ +M S + N + +I R A A +M K+ P T
Sbjct: 85 YSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTF 144
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ C + ++ + F EI G PS++ Y ++ K +A LL +M
Sbjct: 145 GTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEE 204
Query: 122 N----RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ + V + K D +N M Y F ++ +G + Y+++L L
Sbjct: 205 KGCKPDVVAYNTVIDSLCK---DRRANEAM--YFFSEMVDQGIPPNVVTYSSILHGFCNL 259
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G A + + R + P LV
Sbjct: 260 GQLNEATSLFKQMIGRNVMPNTVTFTILV 288
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M ES + + +N +I+ G+ E A + + + P+ T
Sbjct: 435 GHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTY 494
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S GL +E+ E F+++ +G LP+ Y + + + ++ +A L++EM
Sbjct: 495 TVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEM-V 553
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVE 149
R + T QM+ D ESN +++
Sbjct: 554 GRGFSADSSTFQML---LDLESNDEIIS 578
>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like, partial [Cucumis sativus]
Length = 602
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 1/208 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + + M + G ++ + N + F + R EEA + + ME+ PN +
Sbjct: 377 GMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSF 436
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +YC E++ F+ ++ G PSV+ Y + Y K + ++AY L++EM
Sbjct: 437 SILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQE 496
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I GE N +F+++ G + Y ++ L G +
Sbjct: 497 RGLMPDTYTYTSLIDGE-RASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRAD 555
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
A ++ DE K G+ P+ ++ L+ S+
Sbjct: 556 EAFKLYDEMNKEGIVPDDGIYSSLIASL 583
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E + + M + G A + ++NA IE + + G+ EEA K EM++ P+ T +
Sbjct: 449 FAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTS 508
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---- 119
++ +G VD + E F E+ G+ +V+ Y ++++ +K R D+A+ L DEM
Sbjct: 509 LIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEG 568
Query: 120 -------HTNRISNIHQVTGQMIKG 137
+++ I+++H+V G ++ G
Sbjct: 569 IVPDDGIYSSLIASLHKV-GPLVSG 592
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 1/174 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + +L M E GVA N SF+ +I+ + + F EA + + MEK P+ T A
Sbjct: 415 EEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAF 474
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ YC G ++E+ + E++ G++P Y L+ S D A L +EM +
Sbjct: 475 IERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGL 534
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
N + VT +I + ++D++N EG Y++L+ +L +G
Sbjct: 535 -NRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVG 587
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K + M+E + N+ ++ A+I + G + A +M+ D N
Sbjct: 307 GNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIF 366
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC G++DE+ ++ G ++ + + +SNR ++A LL M
Sbjct: 367 NTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEE 426
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ + V+ ++ + E N+ +F + +G + YNA +E G E
Sbjct: 427 RGVAP-NVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKME 485
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++++E +RGL P+ + + L+
Sbjct: 486 EAYKLINEMQERGLMPDTYTYTSLI 510
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 11/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
ILS M ++ V N ++ +IE + + + EEA K + EM K +P+ ++++ C
Sbjct: 245 ILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNC 304
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRI 124
G + + F E+ ++P+ Y L+ K+ A ++++M + NR+
Sbjct: 305 KFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRV 364
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ G KG D+ Q + + +G+ + N + RE A
Sbjct: 365 IFNTLMDGYCKKGMIDEALRLQNI------MQQKGFEIDAFTCNIIASGFCRSNRREEAK 418
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
R+L +RG+ P + + L+
Sbjct: 419 RLLLTMEERGVAPNVVSFSILI 440
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 86/232 (37%), Gaps = 36/232 (15%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEA----------------------IK 44
C L +M +SG+ S+ AV++ + G A +
Sbjct: 172 CVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLN 231
Query: 45 AYVE-------------MEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP 91
Y+E MEK D N T ++ Y + ++E+++ F E+ GI P
Sbjct: 232 GYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEP 291
Query: 92 SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYV 151
V Y ++ K A+ L DEM R+ G +I G + E +
Sbjct: 292 DVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGAC-KAGEMKAAEMM 350
Query: 152 FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+ + +G + +N L++ G+ + A R+ + ++G + F N
Sbjct: 351 VNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCN 402
>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N +I+AF G + AI EM+K R P RT ++ + AG + + E F ++
Sbjct: 521 YNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMR 580
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
SG +P+V + L+ + + + A +LDEM +S ++ G
Sbjct: 581 RSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTG 640
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+ EY F KL EG L + Y ALL+A G + A V E + + + F +N L
Sbjct: 641 KAFEY-FTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNIL 699
Query: 206 V 206
+
Sbjct: 700 I 700
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M SG +FNA++ + + E+A++ EM P+E T +++ Y
Sbjct: 575 IFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYA 634
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ E F ++++ G+ V Y LL KS R A + EM I
Sbjct: 635 ALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTF 694
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I G W+ + + ++ EG + Y + + A G RA + + E
Sbjct: 695 VYNILIDGWARRGDVWEAAD-LMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQE 753
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P + + L+
Sbjct: 754 MEALGVKPNVKTYTTLI 770
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 58/118 (49%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RN+ +N +I+ + + G EA +M++ P+ T
Sbjct: 672 GRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTY 731
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ ++ C AG + + + QE+++ G+ P+V Y L+ +A ++ + A +EM
Sbjct: 732 TSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPEKALRCFEEM 789
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M + GV + ++ + I A + G A K EME + PN +T ++
Sbjct: 711 EAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLI 770
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ A L +++ F+E+K +G+ P Y C++ ++ +++
Sbjct: 771 HGWACASLPEKALRCFEEMKLAGLKPDKAVYHCLMTSLLSRAT 813
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/209 (17%), Positives = 91/209 (43%), Gaps = 1/209 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
++++ M E G+ D ++ ++ + G E+ + + +++ P+ + ++++
Sbjct: 398 ESLVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINM 457
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
Y G V ++ E + ++S+GI ++ Y ML+ + K W +A+ + +++ + +
Sbjct: 458 YTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPD 517
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ +IK F N ++ ++ + + R + ++ G RA +
Sbjct: 518 VVLYNNIIKA-FCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIF 576
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWE 216
D + G P + N LV + R E
Sbjct: 577 DMMRRSGCIPTVHTFNALVLGLVEKRQME 605
>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 99/225 (44%), Gaps = 41/225 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +++ + M G+ N +++ +I++F + G+ + A+ +M +V
Sbjct: 369 GKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPY 428
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+++S +C G + +K F E+ ++G+ P+V+ Y L++ Y K +A+ L EM
Sbjct: 429 SSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTG 488
Query: 120 ------------------HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
H NR++ +++ G+M++ W ++
Sbjct: 489 KGISPNTYTFTALISGLCHANRMAEANKLFGEMVE--------WNVIPNEVT-------- 532
Query: 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
YN L+E G RA +LDE ++GL P+ + + L+
Sbjct: 533 -----YNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLI 572
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 84/197 (42%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+++++ + GVA + +NA+I + + G+ +EA + M PN+ T ++ +C
Sbjct: 342 LVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFC 401
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +D + ++ GI +V Y L++ + K + A L DEM N +
Sbjct: 402 KRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVV 461
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ +I G + E ++ ++ +G + AL+ L A ++ E
Sbjct: 462 IYTSLISG-YCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGE 520
Query: 190 ATKRGLFPELFRHNKLV 206
+ + P +N L+
Sbjct: 521 MVEWNVIPNEVTYNVLI 537
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + M E V N ++N +IE + G A + EM + P+ T ++
Sbjct: 513 EANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLI 572
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S C G V E++E +++ + MC+ LL Y K R DDA EM ++
Sbjct: 573 SGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVA 632
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+I G + +++ + +++ +G Y +++A G + A
Sbjct: 633 MDLVCYSVLIYGILRQQDRRSIID-LLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFG 691
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ D G P + + L+
Sbjct: 692 LWDIMVSEGCLPNVVTYTALI 712
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 52/120 (43%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G N+ ++N +I F + GR +EA + V M P+ + ++ YC G + E+
Sbjct: 769 GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEA 828
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ ++ + + G+ P + Y L+ + A+ L D+M + +I G
Sbjct: 829 IKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHG 888
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 2/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M + G+ ++ + +I+A + G + A + M C PN T A+++ C
Sbjct: 657 LLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLC 716
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL+D+++ +E+ +S LP+ Y L + A L D + ++N
Sbjct: 717 KIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLAN--T 774
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT ++ F Q V + G Y+ ++ G + A ++ +
Sbjct: 775 VTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWES 834
Query: 190 ATKRGLFPELFRHNKLVW 207
RG+ P+ +N L++
Sbjct: 835 MLNRGVNPDTVAYNFLIY 852
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 9/178 (5%)
Query: 30 IEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGI 89
+E F G EE + +E V P+E + ++ G + + + ++K G+
Sbjct: 298 VEEFEAG---EEMMNEMIEFGFV---PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGV 351
Query: 90 LPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQVTGQMIKGEFDDESNWQMV 148
PS+ Y L+ K + D+A L + M H N VT ++ F +
Sbjct: 352 APSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPN--DVTYSILIDSFCKRGKLDVA 409
Query: 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ K+ G + Y++L+ LG A + DE GL P + + L+
Sbjct: 410 LHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLI 467
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 6/232 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + SG+ + + AV+ + + F A + ME CD + T + C
Sbjct: 202 LFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLC 261
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
V E+ E + G+ V YC L+ K ++ +++EM
Sbjct: 262 KNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEA 321
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ G + N + +K+ G + YNAL+ ++ G + A + +
Sbjct: 322 AVSNLVDG-LRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNN 380
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLP 241
+GLFP N + +S+ + + G +L KM E+ + P
Sbjct: 381 MGHKGLFP-----NDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYP 427
>gi|410110107|gb|AFV61133.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
brasiliensis]
Length = 382
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 55 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 114
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 115 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 174
Query: 123 RI 124
I
Sbjct: 175 NI 176
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 184 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 243
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 244 SGVE-IDQILFQ 254
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 52/94 (55%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++ +IE R+ + +AI + +++ P+ A+++V+ A L E++ E+K
Sbjct: 8 YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMK 67
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 68 TAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 101
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N++I + + E+A EM+ +PN T
Sbjct: 160 LFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 219
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 220 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 279
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 280 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 330
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 331 KYXNVVEVFDKMRGLGYFPD 350
>gi|242092154|ref|XP_002436567.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
gi|241914790|gb|EER87934.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
Length = 492
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 83/155 (53%), Gaps = 1/155 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ +++L+ M+ +G+ N+ ++N +I+A+ + RF E ++M C P+ T+ +
Sbjct: 228 FEKVKSLLTDMARAGIRPNTVTYNTLIDAYGKARRFPEMESTLLKMLSQNCKPDIWTMNS 287
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
L + +G ++ + +++ ++SGI+P++ Y +LL Y K+ ++ +++ M
Sbjct: 288 TLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYY 347
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158
S VT ++ F + + +EY+F + E
Sbjct: 348 YS-WTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSE 381
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 2/176 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSVYCFAG 72
M + G A N +S+ A++ A+ + GRF EA M+ C P+ +T ++ A
Sbjct: 167 MIDEGCAPNLESYTALVSAYSRSGRFHEAFNLLDRMKDTPGCQPDVKTYSILIKSCLHAY 226
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++ K ++ +GI P+ + Y L+ Y K+ R+ + L +M +
Sbjct: 227 DFEKVKSLLTDMARAGIRPNTVTYNTLIDAYGKARRFPEMESTLLKMLSQNCKPDIWTMN 286
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ F + +E ++K G ++ YN LL++ + E+ V++
Sbjct: 287 STLRA-FGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVME 341
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+Y++ A++ M + + ++N VI+AF + G E+ + M+ R PN TL
Sbjct: 332 MYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLC 391
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+V+ Y AG V + K + +++S I ++ + L+ Y + + + +LD M +
Sbjct: 392 SVVRAYGRAGEVKKIKTVLRIVENSDITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEH 451
Query: 123 RISNIHQVTGQMIK 136
R MIK
Sbjct: 452 RCKPDKVTCATMIK 465
>gi|224117122|ref|XP_002317482.1| predicted protein [Populus trichocarpa]
gi|222860547|gb|EEE98094.1| predicted protein [Populus trichocarpa]
Length = 433
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 33/207 (15%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ I+A G+ A+K Y M K++C P+ V+ CF V E+ F+ +
Sbjct: 178 TYGTFIKALTNKGKLGTAMKLYEAMWKMQCKPDVVICNCVIDALCFKKRVPEALAVFEGM 237
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR----------------ISNIH 128
K G +P+V Y L+ K R + Y LLDEM + +
Sbjct: 238 KERGCIPNVATYNSLIKHMCKIGRMEKVYELLDEMQEKKGSCMPDEITFNYLLKSLKKPE 297
Query: 129 QVTGQMIKGEFDD--------------ESNW---QMVEYVFDKLNCEGYGLGMRFYNALL 171
+V G + + + + ++W + V Y ++++ G GL R Y ++
Sbjct: 298 EVAGVLERMKINGCKMNNDTCNLLLKLHADWDSEEKVRYTWEEMEKNGLGLDRRSYTIMI 357
Query: 172 EALWCLGLRERAARVLDEATKRGLFPE 198
L+ G E A R E +G+ PE
Sbjct: 358 HWLYDKGRVEDALRYFGEMENKGMVPE 384
>gi|410110117|gb|AFV61138.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
hermannioides]
Length = 382
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 55 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 114
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 115 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 174
Query: 123 RI 124
I
Sbjct: 175 NI 176
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRS 243
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 244 SGVE-IDQILFQ 254
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 52/94 (55%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++ +IE R+ + +AI + +++ P+ A+++V+ A L E++ E+K
Sbjct: 8 YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMK 67
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 68 TAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 101
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 160 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 219
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 220 TIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 279
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 280 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKXITVFERMIHLLSKYK 330
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 331 KYSNVVEVFDKMRGLGYFPD 350
>gi|242038267|ref|XP_002466528.1| hypothetical protein SORBIDRAFT_01g009420 [Sorghum bicolor]
gi|241920382|gb|EER93526.1| hypothetical protein SORBIDRAFT_01g009420 [Sorghum bicolor]
Length = 595
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 13/202 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L+RM + VA + +FN ++ F GRFE+A + +ME+ C PN +
Sbjct: 203 GKLDEAKHVLARMKAADVALDVVAFNTLLAGFVADGRFEDAFELTGQMEQRGCPPNAVSY 262
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G VDE+ F E++ G P + Y L++ + K+ + Y LD +
Sbjct: 263 TTLIQGLGARGRVDEAMRVFVEMRRKGCAPDAVTYGTLVSTFCKAGKISQGYEFLDAISR 322
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKL------NCEGYGLGMRFYNALLEALW 175
+ + +V + G F + +E + + C ++ YN ++
Sbjct: 323 DGL----RVDAAVYHGFFVAHEKKEQLEECLELMERMRECRCPP---DLKIYNVVIRLAC 375
Query: 176 CLGLRERAARVLDEATKRGLFP 197
LG ++A + +E GL P
Sbjct: 376 RLGETKQAMSLWNEMETGGLSP 397
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Query: 47 VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
VE + R + R A+L +C G +DE+K +K++ + V+ + LLA +
Sbjct: 178 VEEPQTRFPLSLRHYTALLYGWCRQGKLDEAKHVLARMKAADVALDVVAFNTLLAGFVAD 237
Query: 107 NRWDDAYGLLDEMH-----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
R++DA+ L +M N +S + G +G D+ VF ++ +G
Sbjct: 238 GRFEDAFELTGQMEQRGCPPNAVSYTTLIQGLGARGRVDEAMR------VFVEMRRKGCA 291
Query: 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
Y L+ G + LD ++ GL
Sbjct: 292 PDAVTYGTLVSTFCKAGKISQGYEFLDAISRDGL 325
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 99/225 (44%), Gaps = 41/225 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +++ + M G+ N +++ +I++F + G+ + A+ +M +V
Sbjct: 369 GKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPY 428
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+++S +C G + +K F E+ ++G+ P+V+ Y L++ Y K +A+ L EM
Sbjct: 429 SSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTG 488
Query: 120 ------------------HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
H NR++ +++ G+M++ W ++
Sbjct: 489 KGISPNTYTFTALISGLCHANRMAEANKLFGEMVE--------WNVIPNEVT-------- 532
Query: 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
YN L+E G RA +LDE ++GL P+ + + L+
Sbjct: 533 -----YNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLI 572
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 84/197 (42%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+++++ + GVA + +NA+I + + G+ +EA + M PN+ T ++ +C
Sbjct: 342 LVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFC 401
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +D + ++ GI +V Y L++ + K + A L DEM N +
Sbjct: 402 KRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVV 461
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ +I G + E ++ ++ +G + AL+ L A ++ E
Sbjct: 462 IYTSLISG-YCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGE 520
Query: 190 ATKRGLFPELFRHNKLV 206
+ + P +N L+
Sbjct: 521 MVEWNVIPNEVTYNVLI 537
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 58/139 (41%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G N+ ++N +I F + GR +EA + V M P+ + ++ YC G + E+
Sbjct: 672 GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEA 731
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ ++ + + G+ P + Y L+ + A+ L D+M + +I G
Sbjct: 732 IKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHG 791
Query: 138 EFDDESNWQMVEYVFDKLN 156
S +Y KLN
Sbjct: 792 TCLMSSVSSTADYFSCKLN 810
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 9/178 (5%)
Query: 30 IEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGI 89
+E F G EE + +E V P+E + ++ G + + + ++K G+
Sbjct: 298 VEEFEAG---EEMMNEMIEFGFV---PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGV 351
Query: 90 LPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQVTGQMIKGEFDDESNWQMV 148
PS+ Y L+ K + D+A L + M H N VT ++ F +
Sbjct: 352 APSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPN--DVTYSILIDSFCKRGKLDVA 409
Query: 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ K+ G + Y++L+ LG A + DE GL P + + L+
Sbjct: 410 LHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLI 467
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/232 (19%), Positives = 87/232 (37%), Gaps = 6/232 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + SG+ + + AV+ + + F A + ME CD + T + C
Sbjct: 202 LFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLC 261
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
V E+ E + G+ V YC L+ K ++ +++EM
Sbjct: 262 KNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEA 321
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ G + N + +K+ G + YNAL+ ++ G + A + +
Sbjct: 322 AVSNLVDG-LRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNN 380
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLP 241
+GLFP N + +S+ + + G +L KM E+ + P
Sbjct: 381 MGHKGLFP-----NDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYP 427
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 84/206 (40%), Gaps = 10/206 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR--------CDPNERTL 61
+L M E G+ ++ ++ +I GR EA + +++ + C PN T
Sbjct: 552 LLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTY 611
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ C GL+D+++ +E+ +S LP+ Y L + A L D +
Sbjct: 612 TALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE 671
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++N VT ++ F Q V + G Y+ ++ G +
Sbjct: 672 GFLAN--TVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLK 729
Query: 182 RAARVLDEATKRGLFPELFRHNKLVW 207
A ++ + RG+ P+ +N L++
Sbjct: 730 EAIKLWESMLNRGVNPDTVAYNFLIY 755
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 9/209 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G++ + +A+L MS G+ NS +N +I A + GR +EA+ EM C+P+ +
Sbjct: 395 GMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSY 454
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C ++E++ F+ + G++ + + Y ++ + RW DA L EM
Sbjct: 455 NTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMIL 514
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ S +IK D N + +++ +G YN L+ L +E
Sbjct: 515 HGCSLDVVSYNGLIKAMCKD-GNVDRSLVLLEEMAEKGIKPNNVSYNILISELC----KE 569
Query: 182 RAARVLDEATK----RGLFPELFRHNKLV 206
R R E +K +GL P++ +N L+
Sbjct: 570 RRVRDALELSKQMLNQGLAPDIVTYNTLI 598
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 5/215 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L M+ G ++ + VI A G EA EM + C + T
Sbjct: 189 GRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTF 248
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ V+ C G V E+ + + G +P VM Y LL + + D+A +L
Sbjct: 249 DDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAML----- 303
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R+ ++ V + G E +++ + +G Y+ L+ L LG
Sbjct: 304 GRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIS 363
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A R+L E K+G P + + ++ S + MW+
Sbjct: 364 SAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 398
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 93/235 (39%), Gaps = 38/235 (16%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +A+L R+ E V FN VI G+ EA + Y M C P+ T ++
Sbjct: 298 EARAMLGRVPELNVVL----FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILM 353
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G + + +E++ G P+V+ Y ++L + K+ WDD LL+EM ++
Sbjct: 354 HGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLT 413
Query: 126 NIHQVTGQMI-----KGEFDDE---------------------------SNWQM--VEYV 151
Q MI G D+ +N QM E++
Sbjct: 414 LNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHM 473
Query: 152 FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
F+ L EG YN ++ AL G + A R+ E G ++ +N L+
Sbjct: 474 FENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLI 528
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 53/108 (49%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M+E G+ N+ S+N +I + R +A++ +M P+ T +++ C
Sbjct: 543 LLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLC 602
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
G + + +++ + + P ++ Y +L++ + K DDA LL+
Sbjct: 603 KMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 650
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + M G + + S+N +I+A + G + ++ EM + PN +
Sbjct: 500 GRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSY 559
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S C V ++ E +++ + G+ P ++ Y L+ K A LL+++H
Sbjct: 560 NILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHN 619
Query: 122 NRISNIHQ 129
N+H
Sbjct: 620 ---ENVHP 624
>gi|410110143|gb|AFV61151.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
velutina]
Length = 382
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 55 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 114
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 115 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 174
Query: 123 RI 124
I
Sbjct: 175 NI 176
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 243
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 244 SGVE-IDQILFQ 254
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 52/94 (55%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++ +IE R+ + +AI + +++ P+ A+++V+ A L E++ E+K
Sbjct: 8 YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMK 67
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 68 TAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 101
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 160 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 219
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 220 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 279
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 280 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAVDAGEVKDITVFERMVHLLSKYK 330
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 331 KYSNVVEVFDKMRGLGYFPD 350
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 6/206 (2%)
Query: 8 QAILSRMSE----SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLE 62
QA L M E G+A N ++ VI + + GR +EA+K + EM K P
Sbjct: 202 QAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYN 261
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
A++ YC G +D + + G+ +V Y +L+ R +AY L++EM
Sbjct: 262 ALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 321
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
++ + T ++ E N + +F+ ++ G + Y +L+ AL G +
Sbjct: 322 GLA-LDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQE 380
Query: 183 AARVLDEATKRGLFPELFRHNKLVWS 208
++ DEA +RG+ P+L +N L+ S
Sbjct: 381 TDKLFDEAVRRGIRPDLVLYNALINS 406
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 21/204 (10%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM E GVA ++N ++ A GR EA + EM + T +++ +C G
Sbjct: 282 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEG 341
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE----------MHTN 122
V ++ E F+ + G+ +V+ Y L+ +K + + L DE + N
Sbjct: 342 NVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 401
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ N H +G I F+ + D + YN L+ L LG +
Sbjct: 402 ALINSHSTSGN-IDRAFEIMGEMEKKRIAPDDVT----------YNTLMRGLCLLGRVDE 450
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A +++DE TKRG+ P+L +N L+
Sbjct: 451 ARKLIDEMTKRGIQPDLVTYNTLI 474
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 3/190 (1%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
N+ ++N VI F GR + A+ EM E+ PN+ T V+S +C G VDE+ +
Sbjct: 184 NAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKV 243
Query: 81 FQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF 139
F E+ + G + P + Y L+ Y + D A D M ++ ++ F
Sbjct: 244 FDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALF 303
Query: 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
D + E V +++ +G L + YN L+ G ++A + + ++RG+ +
Sbjct: 304 MDGRGTEAYELV-EEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 362
Query: 200 FRHNKLVWSV 209
+ L++++
Sbjct: 363 VTYTSLIYAL 372
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 7/155 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + G+ + +NA+I + G + A + EMEK R P++ T
Sbjct: 376 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 435
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G VDE+++ E+ GI P ++ Y L++ Y+ DA + +EM
Sbjct: 436 NTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMN 495
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNW--QMVE 149
+ +I+ G+ DD N +MVE
Sbjct: 496 KGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVE 530
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 5/185 (2%)
Query: 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ +FN ++ G+ A++ +M + PN T V++ +C G V + + +
Sbjct: 154 TTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMR 209
Query: 83 EIKS-SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
E++ GI P+ Y +++ + K R D+A + DEM T V + G + D
Sbjct: 210 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 269
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+ D++ G + + YN L+ AL+ G A +++E +GL ++F
Sbjct: 270 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFT 329
Query: 202 HNKLV 206
+N L+
Sbjct: 330 YNILI 334
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 91/202 (45%), Gaps = 11/202 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ I MS GV ++ ++I A + G+ +E K + E + P+
Sbjct: 341 GNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLY 400
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
A+++ + +G +D + E E++ I P + Y L+ R D+A L+DEM
Sbjct: 401 NALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTK 460
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ ++ ++G +KG+ D + +++ +G+ + YNAL++ L
Sbjct: 461 RGIQPDLVTYNTLISGYSMKGDVKDALR------IRNEMMNKGFNPTLLTYNALIQGLCK 514
Query: 177 LGLRERAARVLDEATKRGLFPE 198
G + A ++ E + G+ P+
Sbjct: 515 NGQGDDAENMVKEMVENGITPD 536
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I+ M + +A + ++N ++ GR +EA K EM K P+ T ++S Y
Sbjct: 419 IMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYS 478
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G V ++ E+ + G P+++ Y L+ K+ + DDA ++ EM N I+
Sbjct: 479 MKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 538
Query: 130 VTGQMIKG 137
+I+G
Sbjct: 539 TYISLIEG 546
>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
Length = 949
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 4/198 (2%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ M + G+ + +N +I AF G + AI+ EM+K+R P RT ++ Y
Sbjct: 540 AVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGY 599
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+G + S E F ++ G +P+V + L+ + + A +LDEM +S
Sbjct: 600 AKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQ---AVEILDEMTLAGVSANE 656
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++++G + EY F +L EG + + Y ALL+A G + A V
Sbjct: 657 HTYTKIMQGYASVGDTGKAFEY-FTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTK 715
Query: 189 EATKRGLFPELFRHNKLV 206
E + R + F +N L+
Sbjct: 716 EMSARNIPRNSFVYNILI 733
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RNS +N +I+ + + G EA +M+K P+ T
Sbjct: 705 GRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTY 764
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ +S AG ++ + + +E+++ G+ P++ Y L+ +A+++ + A +EM
Sbjct: 765 TSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEM 822
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M + GV + ++ + I A + G A + EME + PN +T ++
Sbjct: 744 EAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLI 803
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ A L +++ ++E+K+ GI P Y C+L ++ ++++
Sbjct: 804 KGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRAS 846
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 15/178 (8%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY-----CFAGLVDE 76
N+ + +I A Q E A EME E ++A +++Y + + DE
Sbjct: 413 NASIYGKIIYAHCQTCNMERAEALVREME-------EEGIDAPIAIYHTMMDGYTMVADE 465
Query: 77 SKE--QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134
K F+ +K G P+V+ Y L+ +Y K + A + M + + + M
Sbjct: 466 KKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMM 525
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
I G F +W VF+ + EG + YN ++ A +G +RA + + E K
Sbjct: 526 ING-FVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQK 582
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 18/174 (10%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N D++ AVI AF EK+ P+ ++ Y G + ++E F
Sbjct: 290 NGDNWQAVISAF----------------EKI-SKPSRTEFGLMVKFYGRRGDMHRARETF 332
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+ +++ GI P+ Y L+ YA D+A + +M I + VT +I G F
Sbjct: 333 ERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGI-EMSLVTYSVIVGGFSK 391
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ + +Y FD+ L Y ++ A ERA ++ E + G+
Sbjct: 392 AGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGI 445
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 6/194 (3%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E GV N +++ +I F + + A + +M K P+ ++S +C G
Sbjct: 510 MKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGN 569
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-NRISNIHQVTG 132
+D + + +E++ P+ + ++ YAKS + + D M + +H G
Sbjct: 570 MDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNG 629
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+I G + Q VE + D++ G Y +++ +G +A
Sbjct: 630 -LINGLVEKR---QAVE-ILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQN 684
Query: 193 RGLFPELFRHNKLV 206
GL ++F + L+
Sbjct: 685 EGLDVDIFTYEALL 698
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 71/170 (41%), Gaps = 13/170 (7%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
+R+ G+ + ++ A+++A + GR + A+ EM N ++ +
Sbjct: 679 FTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWAR 738
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G V E+ + Q++K G+ P + Y ++ +K+ + A ++EM + +
Sbjct: 739 RGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKT 798
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNC--EGYGLGMR----FYNALLEAL 174
+IKG W L+C E +G++ Y+ LL +L
Sbjct: 799 YTTLIKG-------WARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSL 841
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +I + GR EEA+K + EM +C PN +++ + AG V+ + + F+ +
Sbjct: 895 TYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRM 954
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
GI P + Y +L+ + R DDA +E+ + MI G
Sbjct: 955 IKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMING-LGKSRR 1013
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ +F ++ G + YNAL+ G+ ++A ++ +E GL P +F +N
Sbjct: 1014 LEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNA 1073
Query: 205 LV 206
L+
Sbjct: 1074 LI 1075
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 3/210 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + IL M + G + ++ +I+A G+ ++A + Y +M P+ T
Sbjct: 275 AGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVT 334
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S + G ++ K + E+++ G P V+ Y +L+ KS + D A+ +LD M
Sbjct: 335 YITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMR 394
Query: 121 TNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
I N+H +I G + + +E +F+ + G Y ++ LG
Sbjct: 395 VRGIVPNLHTYN-TLISGLLNLRRLDEALE-LFNNMESLGVAPTAYSYVLFIDYYGKLGD 452
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSV 209
E+A ++ KRG+ P + N ++S+
Sbjct: 453 PEKALDTFEKMKKRGIMPSIAACNASLYSL 482
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 81/202 (40%), Gaps = 6/202 (2%)
Query: 1 GGLYK-----ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
GGL K E I M + N +N +I F + G A + M K
Sbjct: 901 GGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIR 960
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
P+ ++ ++ G VD++ F+E+K +G+ P + Y +++ KS R ++A L
Sbjct: 961 PDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSL 1020
Query: 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
EM IS +I F + +F++L G + YNAL+
Sbjct: 1021 FSEMKNRGISPELYTYNALIL-HFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHS 1079
Query: 176 CLGLRERAARVLDEATKRGLFP 197
G ++RA V + G P
Sbjct: 1080 KSGNKDRAFSVFKKMMIVGCSP 1101
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 14/208 (6%)
Query: 6 ECQAILSRMSES-GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+ + + + ++S G +S+N +++ E A+K +VEM+ C PN T +
Sbjct: 770 DAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLL 829
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L + + +DE E + E+ G P+++ + ++++ KSN + A L E+ +
Sbjct: 830 LDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDF 889
Query: 125 SNIHQVTGQMIKGEFD---DESNWQMVEYVFD---KLNCEGYGLGMRFYNALLEALWCLG 178
S G +I G E ++ E + D K NC YN L+ G
Sbjct: 890 SPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCA-------IYNILINGFGKAG 942
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
A + K G+ P+L + LV
Sbjct: 943 NVNIACDLFKRMIKEGIRPDLKSYTILV 970
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 9/205 (4%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + M GVA + S+ I+ + + G E+A+ + +M+K P+ A L
Sbjct: 420 EALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASL 479
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN--- 122
G + E+K+ F +I + G+ P + Y M++ Y+K+ + D A LL EM +
Sbjct: 480 YSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCE 539
Query: 123 -RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I ++ + + K DE+ WQM F +L + YN L+ L G
Sbjct: 540 PDIIVVNSLIDTLYKAGRVDEA-WQM----FGRLKDLKLAPTVVTYNILITGLGKEGKLL 594
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A + + G P N L+
Sbjct: 595 KALDLFGSMKESGCPPNTVTFNALL 619
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 60/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + I + + G++ +S ++N +++ + + G+ ++A K EM C+P+ +
Sbjct: 486 GRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVV 545
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ AG VDE+ + F +K + P+V+ Y +L+ K + A L M
Sbjct: 546 NSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSM 603
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 84/197 (42%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M G+ N ++N +I R +EA++ + ME + P + + Y
Sbjct: 389 MLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYG 448
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +++ + F+++K GI+PS+ L A+ R +A + +++H +S
Sbjct: 449 KLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSP-DS 507
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT M+ + + ++ EG + N+L++ L+ G + A ++
Sbjct: 508 VTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGR 567
Query: 190 ATKRGLFPELFRHNKLV 206
L P + +N L+
Sbjct: 568 LKDLKLAPTVVTYNILI 584
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/266 (18%), Positives = 97/266 (36%), Gaps = 69/266 (25%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + + RN +++ + +A G +A A +M + N + ++
Sbjct: 144 VFDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLL 203
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLA---------------------------- 101
G E+ + ++ + S G+ PS+ Y L+
Sbjct: 204 QPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIY 263
Query: 102 -------VYAKSNRWDDAYGLL-------------------------------DEMHTNR 123
V ++ R DDAYG+L E++T
Sbjct: 264 TYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKM 323
Query: 124 ISNIHQ---VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ H+ VT + +F + + + V+ + ++ +GY + Y L+EAL G
Sbjct: 324 RASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKV 383
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
++A +LD RG+ P L +N L+
Sbjct: 384 DQAFDMLDVMRVRGIVPNLHTYNTLI 409
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 1/174 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + R+ + +A ++N +I + G+ +A+ + M++ C PN T
Sbjct: 555 AGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVT 614
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L C VD + + F + P V+ Y ++ K R A+ +M
Sbjct: 615 FNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMK 674
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+S H ++ G D ++ V + ++ G + + L+E +
Sbjct: 675 -KFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECI 727
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 47/95 (49%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E ++ S M G++ ++NA+I F G ++A K + E++ + +PN T A+
Sbjct: 1015 EEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNAL 1074
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99
+ + +G D + F+++ G P+ + L
Sbjct: 1075 IRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109
>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
Length = 321
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 40/191 (20%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ M+E + + + +I+ Q G+ EA EME C P A+LS
Sbjct: 136 ALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAILSWL 195
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C ++E+ + F+ + SGILP + + M++ Y + +R DDA LL +M +
Sbjct: 196 CKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSA------ 249
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR--FYNALLEALWCLGLRERAARV 186
GL R YN L++AL G A R+
Sbjct: 250 --------------------------------GLAPREVIYNTLIDALNRAGRVSEAYRL 277
Query: 187 LDEATKRGLFP 197
L E RGL P
Sbjct: 278 LQEMISRGLSP 288
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++L M SG +NA++ +G R EA K + M P+ T
Sbjct: 164 GKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTF 223
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC +D++ Q++KS+G+ P + Y L+ ++ R +AY LL EM +
Sbjct: 224 GMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMIS 283
Query: 122 NRISNIHQVTGQMIKGEFDDES 143
+S + M K + DD +
Sbjct: 284 RGLSPNSRTYALMRKQQTDDSN 305
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 85/224 (37%), Gaps = 35/224 (15%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+E G +F +++ + R +A + M + C PN ++ C G
Sbjct: 1 MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT-- 131
E+ + ++S G+ P+++ Y +L+ + K + A +L EM T R + VT
Sbjct: 61 SAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEM-TGRGHEPNHVTYN 119
Query: 132 ----GQMIKGEFDDESNW--QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G G+ DD M E K+ + YG Y L++ L G A
Sbjct: 120 TFLHGLCKYGKVDDALALFRAMTE---KKIRLDVYG-----YTTLIDGLCQAGKLAEAYS 171
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNK 229
+LDE G P + G Y AI WL K
Sbjct: 172 LLDEMENSGCVP------------------KPGCYNAILSWLCK 197
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + RM+ SG+ + +F ++ + +G R ++A+ +M+ P E
Sbjct: 198 GSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVI 257
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99
++ AG V E+ QE+ S G+ P+ Y ++
Sbjct: 258 YNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALM 296
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + IL++M E G + +FN +I A G R EEA+ ++ P+ T
Sbjct: 339 GQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTF 398
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G + F+E+KSSG P + Y L+ + A LL EM +
Sbjct: 399 NILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMES 458
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
VT I + + E VFD+++ +G +N L++ L +
Sbjct: 459 AGCPR-STVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRID 517
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +++ + GL P +N ++
Sbjct: 518 DANQLISQMISEGLQPNNITYNSIL 542
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 97/208 (46%), Gaps = 17/208 (8%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L MS SGVA + +F +++ F + G + A++ M ++ C P + T+ +++ YC
Sbjct: 207 MLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYC 266
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNRIS 125
G V+++ Q+ ++G P + Y + ++ A ++D M H +
Sbjct: 267 KLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVF 326
Query: 126 NIHQVTGQMIK-GEFDDESNW--QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-E 181
+ V + K G+ ++ QMVE G + +N L+ AL C G R E
Sbjct: 327 TYNIVVNCLCKNGQLEEAKGILNQMVE--------RGCLPDITTFNTLIVAL-CSGNRLE 377
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
A + + T +GL P+++ N L+ ++
Sbjct: 378 EALDLARQVTLKGLSPDVYTFNILINAL 405
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 85/198 (42%), Gaps = 2/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G R++ ++N +I+ + R EEA + + +M+ N T ++ C
Sbjct: 452 LLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLC 511
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+D++ + ++ S G+ P+ + Y +L Y K A +L M N
Sbjct: 512 KDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVV 571
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
G +I G Q+ + + +G + YN ++++L+ A + E
Sbjct: 572 TYGTLING-LCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFRE 630
Query: 190 ATKRGLFPELFRHNKLVW 207
T+ G P+ F + K+V+
Sbjct: 631 MTEVGEPPDAFTY-KIVF 647
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E + +++ G++ + +FN +I A + G + A++ + EM+ C P+E T
Sbjct: 373 GNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVT 432
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G + ++ + +E++S+G S + Y ++ K R ++A + D+M
Sbjct: 433 YNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMD 492
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
IS +I G D+ + ++ EG YN++L G
Sbjct: 493 LQGISRNAITFNTLIDGLCKDK-RIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDI 551
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
++AA +L T G ++ + L+
Sbjct: 552 KKAADILQTMTANGFEVDVVTYGTLI 577
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 85/209 (40%), Gaps = 1/209 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K + + S M E G+ + +FN +++A + + A+ EM P+E T
Sbjct: 163 GSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETT 222
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ + G + + + G P+ + +L+ Y K R +DA G + +
Sbjct: 223 FTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEI 282
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N Q+T + V D + EG+ + YN ++ L G
Sbjct: 283 ANGFEP-DQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 341
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSV 209
E A +L++ +RG P++ N L+ ++
Sbjct: 342 EEAKGILNQMVERGCLPDITTFNTLIVAL 370
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + + +M G++RN+ +FN +I+ + R ++A + +M PN T ++
Sbjct: 482 EEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSI 541
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L+ YC G + ++ + Q + ++G V+ Y L+ K+ R A LL M +
Sbjct: 542 LTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGM 601
Query: 125 SNIHQVTGQMIKGEF 139
+ +I+ F
Sbjct: 602 RATPKAYNPVIQSLF 616
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 77/190 (40%), Gaps = 1/190 (0%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+G + ++N + Q G A+K M + DP+ T V++ C G ++E
Sbjct: 284 NGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 343
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136
+K ++ G LP + + L+ NR ++A L ++ +S T ++
Sbjct: 344 AKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSP-DVYTFNILI 402
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
+ Q+ +F+++ G YN L++ L LG +A +L E G
Sbjct: 403 NALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCP 462
Query: 197 PELFRHNKLV 206
+N ++
Sbjct: 463 RSTVTYNTII 472
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 21/200 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M E G + N ++ A+I+ + G+ + ++ + +M + C PN T +++ C
Sbjct: 506 LLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLC 565
Query: 70 FAGLVDESKEQFQEIKSS---GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
AGL+D+++ E+K + L C A+ S + + G+L+EM +
Sbjct: 566 AAGLLDKARLLLGEMKQTYWPKYLQGYRC-----AIQGFSKSFIASLGILEEMESYGTVP 620
Query: 127 IHQVTGQMI-------KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
I V G +I + E E + +M+E V + + Y +L++AL
Sbjct: 621 IAPVYGMLIDCFSKAGRLEIAMELHKEMME-VPSSVKTDN-----DMYASLIQALCLASQ 674
Query: 180 RERAARVLDEATKRGLFPEL 199
E A R+ E T+RG PEL
Sbjct: 675 VEEAFRLYSEMTRRGFVPEL 694
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 96/219 (43%), Gaps = 12/219 (5%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
+A N ++ A+++ + + + A + M C+PN +A++ +C AG +D ++
Sbjct: 375 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 434
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE 138
E F ++ G LPSV Y L+ K R D A +L +M + + MI G
Sbjct: 435 EVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 494
Query: 139 F---DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ E +++ + +K G + Y AL++ L G + + + + +++G
Sbjct: 495 CRIGESEKALKLLSLMEEK----GCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGC 550
Query: 196 FPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234
P N + + V ++ + G + L +M + +
Sbjct: 551 SP-----NYVTYRVLINHLCAAGLLDKARLLLGEMKQTY 584
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + ++ M G ++ +++ VI + E+A + EM+ V P+ T
Sbjct: 202 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 261
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +C AGL+++++ F+E++S G P+V+ Y L+ Y K+ + A + M
Sbjct: 262 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 319
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 52/248 (20%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M GV + ++ +I++F + G E+A + EM V C P T A++ Y
Sbjct: 245 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 304
Query: 70 FAGLVDESKEQFQEIKSSG----------------------------------------- 88
A V ++ + F + +G
Sbjct: 305 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 364
Query: 89 ----------ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE 138
+ P+V+ Y L+ K+++ D A+ LLD M ++ H V +I G
Sbjct: 365 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDG- 423
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
F + VF ++ GY + Y +L++ ++ G + A +VL + K P
Sbjct: 424 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 483
Query: 199 LFRHNKLV 206
+ + ++
Sbjct: 484 VVTYTAMI 491
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +M++ G + ++ ++I+ + GR + A+K +M K C PN T A++
Sbjct: 434 QEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDG 493
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G +++ + ++ G P+V+ Y L+ K+ + D + L +M
Sbjct: 494 LCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQM 545
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
G+F++A + EM + P+ T V++ C A V+++ FQE+K G+ P V Y
Sbjct: 202 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 261
Query: 97 CMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ + K+ + A L +EM +
Sbjct: 262 TILIDSFCKAGLIEQAQWLFEEMRS 286
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV--RCDPNERTLEAVLS 66
IL M G + + +I+ F + GR E A++ + EM +V + +++
Sbjct: 608 GILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQ 667
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLLDE 118
C A V+E+ + E+ G +P + + L+ + +WD+A YG+ E
Sbjct: 668 ALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHE 723
>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 683
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 93/196 (47%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
S+M G+ + +S+N VI+ F + G E A++ M++ PN T +++ Y
Sbjct: 413 FSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLK 472
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G V ++K + + G++P V+ + L+ +++ DDA+ EM + Q
Sbjct: 473 LGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQT 532
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+I G + +E + +K+ +G +NA + + + E+A ++ ++
Sbjct: 533 YNVLIHGLCSAGHVSKAIE-LLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDM 591
Query: 191 TKRGLFPELFRHNKLV 206
++ G+ P+ + +N L+
Sbjct: 592 SRYGVSPDSYTYNALI 607
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 67/138 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + ++ G+ ++ +NAVI A + G + A + +M C P+ T
Sbjct: 159 GLAHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTY 218
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G+VDE+ ++++ +GI P+V+ Y ML+ + ++R ++A +L+ M
Sbjct: 219 NTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKE 278
Query: 122 NRISNIHQVTGQMIKGEF 139
+S ++ G F
Sbjct: 279 KGVSATEATYRSLVHGAF 296
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 85/182 (46%), Gaps = 3/182 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+++ + G + + A++E++ + G A + +V++ ++ P+ AV++
Sbjct: 131 ALVADVRSCGCEVSEELLCALVESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAVIAAS 190
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG VD + +FQ++ + G P Y L+ + D+A L+ +M I +
Sbjct: 191 VRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRP-N 249
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE-ALWCLGLRERAARVL 187
VT M+ F + S + V +++ +G Y +L+ A CL +ERA R+L
Sbjct: 250 VVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLVHGAFRCLE-KERAYRML 308
Query: 188 DE 189
E
Sbjct: 309 SE 310
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 69/160 (43%), Gaps = 2/160 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +A L + E G+ + +F ++I+ + ++A + EM + PN +T
Sbjct: 474 GNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTY 533
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C AG V ++ E ++K GI P + + + + + + A L ++M
Sbjct: 534 NVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSR 593
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVF--DKLNCEG 159
+S +IK D+ + E + + ++C G
Sbjct: 594 YGVSPDSYTYNALIKALCDERRVDEAKEIILAMESISCIG 633
>gi|410110063|gb|AFV61111.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
barbata]
Length = 364
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 37 LFREARSLISEMKXAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 96
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 97 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 156
Query: 123 RI 124
I
Sbjct: 157 NI 158
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 106 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 165
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 166 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 225
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 226 SGVE-IDQILFQ 236
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 142 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 201
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 202 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 261
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 262 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 312
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 313 KYSNVXEVFDKMRGLGYFPD 332
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 44/81 (54%)
Query: 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM 98
+ +AI + +++ P+ A+++V+ A L E++ E+K +G++P+ Y
Sbjct: 3 YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYST 62
Query: 99 LLAVYAKSNRWDDAYGLLDEM 119
LL +Y ++ ++ +A + EM
Sbjct: 63 LLTMYVENKKFLEALSVFSEM 83
>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 650
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 63/110 (57%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M + G + + ++N +I +F + G +EAI + E+E+ C P+ + ++++
Sbjct: 464 LFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLG 523
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G VDE+ +F+E++ G+ P V+ Y L+ + K+ R + AY L +EM
Sbjct: 524 KNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEM 573
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 9/202 (4%)
Query: 2 GLYKECQAI--LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
G K +AI LS++ E GV ++ +N V A + + + +M+K P+
Sbjct: 419 GAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIF 478
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T ++S + G VDE+ F+E++ S P ++ Y L+ K+ D+A+ EM
Sbjct: 479 TYNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEM 538
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ N VT + F +M +F+++ +G + YN LL+ CL
Sbjct: 539 QEKGL-NPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLD---CLEK 594
Query: 180 RERAARVLDEATK---RGLFPE 198
R A +D TK +GL P+
Sbjct: 595 SGRTAEAVDLYTKMKQQGLTPD 616
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 10/210 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y E + + M G+ N +N +++ +G ++AI+ + M + C PNE T
Sbjct: 284 GKYDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTY 343
Query: 62 EAVLSVYCFAG---LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
VL++ G +D E + + GI Y L+ +K +A+ L +
Sbjct: 344 SLVLNLLVAEGQLVRLDGIVEISKRYMTQGI------YSYLVRTLSKLGHVSEAHRLFCD 397
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M + + M++ + +E + K++ +G YN + AL L
Sbjct: 398 MWSFPVKGERDSYMSMLESLCGAGKTIEAIE-MLSKIHEKGVVTDTMMYNTVFSALGKLK 456
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWS 208
+ ++ K G P++F +N L+ S
Sbjct: 457 QISHIHDLFEKMKKDGPSPDIFTYNILISS 486
>gi|410110123|gb|AFV61141.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
macrophylla]
Length = 381
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 54 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 113
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 114 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 173
Query: 123 RI 124
I
Sbjct: 174 NI 175
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 182
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 183 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 242
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 243 SGVE-IDQILFQ 253
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 52/94 (55%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++ +IE R+ + +AI + +++ P+ A+++V+ A L E++ E+K
Sbjct: 7 YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMK 66
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 67 TAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 100
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N++I + + E+A EM+ +PN T
Sbjct: 159 LFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 218
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 219 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 278
Query: 120 -HTNRISNIHQVTG 132
+ R + IH + G
Sbjct: 279 DNIPRDTAIHILAG 292
>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
Length = 1245
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 104/231 (45%), Gaps = 6/231 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M G++ N ++N +++ + R EA M + +C P+ T
Sbjct: 302 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 361
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC VD+ + F+ I G++ + + Y +L+ + +S + A L EM +
Sbjct: 362 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVS 421
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + G ++ G D+ + +E +F+ L LG+ Y ++E + G E
Sbjct: 422 HGVLPDVMTYGILLDGLCDNGKLEKALE-IFEDLQKSKMDLGIVMYTTIIEGMCKGGKVE 480
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
A + +G+ P N + ++V + + + G+ + ++ L KM E
Sbjct: 481 DAWNLFCSLPCKGVKP-----NVMTYTVMISGLCKKGSLSEANILLRKMEE 526
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ RM E+G + ++N+++ + G A+ +ME+ + T
Sbjct: 162 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 221
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G +D + F+E+++ GI SV+ Y L+ K+ +W+D LL +M +
Sbjct: 222 STIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 281
Query: 122 NRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I N+ +T ++ F E Q ++ ++ G + YN L++ +C+ R
Sbjct: 282 REIVPNV--ITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG-YCMQNR 338
Query: 181 -ERAARVLDEATKRGLFPELFRHNKLV 206
A +LD + P++ L+
Sbjct: 339 LSEANNMLDLMVRNKCSPDIVTFTSLI 365
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 13/204 (6%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M G+ + ++N+++ + G++ + +M PN T +L V+
Sbjct: 239 SLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVF 298
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G + E+ E ++E+ + GI P+++ Y L+ Y NR +A +LD M N+ S
Sbjct: 299 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 358
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKL----NCEGYGL--GMRFYNALLEALWCLGLRER 182
+IKG + MV+ V D + N GL Y+ L++ G +
Sbjct: 359 VTFTSLIKG-------YCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKL 411
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A + E G+ P++ + L+
Sbjct: 412 AEELFQEMVSHGVLPDVMTYGILL 435
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/198 (18%), Positives = 80/198 (40%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L ++ + G ++ +FN +I+ G+ EA+ M + C P+ T ++++
Sbjct: 134 SVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGI 193
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +G + + ++++ + V Y ++ + D A L EM T I +
Sbjct: 194 CRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSV 253
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+++G W + + + +N LL+ G + A +
Sbjct: 254 VTYNSLVRG-LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 312
Query: 189 EATKRGLFPELFRHNKLV 206
E RG+ P + +N L+
Sbjct: 313 EMITRGISPNIITYNTLM 330
>gi|410110071|gb|AFV61115.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
macrostachya]
Length = 437
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 97 LFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 156
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 157 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRK 216
Query: 123 RI 124
I
Sbjct: 217 NI 218
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ N T
Sbjct: 166 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTY 225
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 226 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 285
Query: 122 NRISNIHQVTGQ 133
+ + I QV Q
Sbjct: 286 SGVE-IDQVLYQ 296
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 202 LFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 261
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT- 121
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+ +
Sbjct: 262 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSP 321
Query: 122 ---NRISNIHQVTG 132
R + IH + G
Sbjct: 322 DNIPRDTAIHILAG 335
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ ++ M G+ NS +++ +I + + G+ + A + ++ + ++ +
Sbjct: 238 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQT 297
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-YGLLDEMHTN 122
++ Y AGLV +K E+KS +P + + A + R ++A Y +
Sbjct: 298 MIVAYERAGLVAHAKRLLHELKSPDNIPRDTA----IHILAGAGRIEEATYVFRQAIDAG 353
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160
+ +I V +MI F + V VFDK+ GY
Sbjct: 354 EVKDI-MVFERMIH-LFSKYKKYANVVEVFDKMRGLGY 389
>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 674
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 93/196 (47%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
S+M G+ + +S+N VI+ F + G E A++ M++ PN T +++ Y
Sbjct: 413 FSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLK 472
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G V ++K + + G++P V+ + L+ +++ DDA+ EM + Q
Sbjct: 473 LGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQT 532
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+I G + +E + +K+ +G +NA + + + E+A ++ ++
Sbjct: 533 YNVLIHGLCSAGHVSKAIE-LLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDM 591
Query: 191 TKRGLFPELFRHNKLV 206
++ G+ P+ + +N L+
Sbjct: 592 SRYGVSPDSYTYNALI 607
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 67/138 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + ++ G+ ++ +NAVI A + G + A + +M C P+ T
Sbjct: 159 GLAHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTY 218
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G+VDE+ ++++ +GI P+V+ Y ML+ + ++R ++A +L+ M
Sbjct: 219 NTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKE 278
Query: 122 NRISNIHQVTGQMIKGEF 139
+S ++ G F
Sbjct: 279 KGVSATEATYRSLVHGAF 296
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 86/216 (39%), Gaps = 25/216 (11%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +A L + E G+ + +F ++I+ + ++A + EM + PN +T
Sbjct: 474 GNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTY 533
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C AG V ++ E ++K GI P + + + + + + A L ++M
Sbjct: 534 NVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSR 593
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+S +IK D+ + E + +E++ C+G ++
Sbjct: 594 YGVSPDSYTYNALIKALCDERRVDEAKEIIL-----------------AMESISCIGTKQ 636
Query: 182 RAA-RVLDEATKRGLFPE-------LFRHNKLVWSV 209
V+ TK G F E L R N + SV
Sbjct: 637 HTYWPVVGALTKMGRFSEAGMFMNKLHRKNAHLGSV 672
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 85/182 (46%), Gaps = 3/182 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+++ + G + + A++E++ + G A + +V++ ++ P+ AV++
Sbjct: 131 ALVADVRSCGCEVSEELLCALVESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAVIAAS 190
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG VD + +FQ++ + G P Y L+ + D+A L+ +M I +
Sbjct: 191 VRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRP-N 249
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE-ALWCLGLRERAARVL 187
VT M+ F + S + V +++ +G Y +L+ A CL +ERA R+L
Sbjct: 250 VVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLVHGAFRCLE-KERAYRML 308
Query: 188 DE 189
E
Sbjct: 309 SE 310
>gi|224089793|ref|XP_002308814.1| predicted protein [Populus trichocarpa]
gi|222854790|gb|EEE92337.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 11/245 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E I M SG+ +S +F+++I F G+ EA EM + PN L
Sbjct: 335 GFGIESVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFIL 394
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ Y A +D+ + F I I P C C+L + N E
Sbjct: 395 TSLIQCYGKAQRIDDVVKTFNRIFDWVITPDDRFCGCLLNVMTQTPNEELSKLVKCVERA 454
Query: 121 TNRISNIHQ--VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
++ + + V Q +G F +E+ +FD ++ E + + N L++ L
Sbjct: 455 NPKLGYVVKLLVEEQDSEGNFKNEAT-----DLFDSISTE---VKKAYCNCLIDLCIKLN 506
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238
+ ER+ +LD ++ + WS+++ + G A TA+ +W+N + ++ GE
Sbjct: 507 MLERSWELLDLGLTLEIYTNIMSRTSTQWSLNLKSLSPGAALTALHIWMNDLSKVLEAGE 566
Query: 239 DLPQL 243
LP L
Sbjct: 567 QLPPL 571
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 20/185 (10%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
++ F+ +I ++ F+ + Y EM+ + PN + +L A + K+ +
Sbjct: 234 DATPFSTLIRIYKVARNFDGCLNFYEEMKALGVKPNLVIYKILLDDMGRAKRPWQVKKFY 293
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
Q+I +G+ PS + Y LL Y ++ DDA+ + EM KG F
Sbjct: 294 QDIIDNGLSPSFVTYAALLHAYGRARYGDDAFKIYREMKE--------------KG-FGI 338
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
ES VE +F+ + G +++++ C G A L+E + G P +F
Sbjct: 339 ES----VE-IFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFI 393
Query: 202 HNKLV 206
L+
Sbjct: 394 LTSLI 398
>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 612
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 16/211 (7%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L E + S M G++ + +++A+I F G+ +AI + +M +P+ T
Sbjct: 211 LVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFS 270
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ +C G V E+K + GI P V+ YC L+ Y + + A + + M
Sbjct: 271 ILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQG 330
Query: 123 RISNIHQVTGQMIKG-----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
++ Q MI G + D+ N +F +++C+ + YN+L++ L
Sbjct: 331 GVTANVQSYNIMINGFCKIKKVDEAMN------LFKEMHCKNIIPDVVTYNSLIDGLCKS 384
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWS 208
G A +++DE RG+ H+K+ ++
Sbjct: 385 GKISYALKLVDEMHDRGV-----PHDKITYN 410
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 91/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + ++M + + +F+ +++ F + GR +EA M K P+ T
Sbjct: 245 GKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTY 304
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC V+++K F + G+ +V Y +++ + K + D+A L EMH
Sbjct: 305 CSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHC 364
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I +I G ++ V D+++ G YN++L+AL +
Sbjct: 365 KNIIPDVVTYNSLIDGLCKSGKISYALKLV-DEMHDRGVPHDKITYNSILDALCKNHQVD 423
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A +L + G+ P+++ + L+
Sbjct: 424 KAIALLTKMKDEGIQPDMYTYTILI 448
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 92/209 (44%), Gaps = 11/209 (5%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ ++I + M++ GV N S+N +I F + + +EA+ + EM P+ T +++
Sbjct: 319 KAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLI 378
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI- 124
C +G + + + E+ G+ + Y +L K+++ D A LL +M I
Sbjct: 379 DGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQ 438
Query: 125 SNIHQVT----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+++ T G G D N +F+ L +GY + + Y +++ L
Sbjct: 439 PDMYTYTILIDGLCKGGRLKDAQN------IFEDLLVKGYNITVYTYTVMIQGFCDNDLF 492
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSV 209
++A +L + G P + ++ S+
Sbjct: 493 DKALALLSKMEDNGCIPNAKTYEIIILSL 521
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 78/191 (40%), Gaps = 1/191 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + M + + ++N++I+ + G+ A+K EM ++ T ++L
Sbjct: 354 EAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSIL 413
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C VD++ ++K GI P + Y +L+ K R DA + +++ +
Sbjct: 414 DALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYN 473
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
MI+G F D + + K+ G + Y ++ +L+ + A +
Sbjct: 474 ITVYTYTVMIQG-FCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEK 532
Query: 186 VLDEATKRGLF 196
+L E RGL
Sbjct: 533 LLREMIARGLL 543
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 83/206 (40%), Gaps = 7/206 (3%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y+ ++ M +G+A + +FN +I F Q G + + + K +PN TL
Sbjct: 72 YQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTT 131
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ C G + ++ ++ + G + +CY L+ K + A LL +
Sbjct: 132 LIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKL 191
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFD---KLNCEGYGLGMRFYNALLEALWCLGLR 180
+ Q M D ++V FD ++ +G + Y+AL+ LG
Sbjct: 192 V----QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKL 247
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A + ++ + P+++ + LV
Sbjct: 248 NDAIGLFNKMISEEINPDVYTFSILV 273
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/189 (19%), Positives = 80/189 (42%), Gaps = 1/189 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G N + +I + G+ A++ ++ PN ++ C LV+E+
Sbjct: 156 GFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEA 215
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ + E+ S GI P V+ Y L++ + + +DA GL ++M + I N T ++
Sbjct: 216 FDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEI-NPDVYTFSILVD 274
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
F E + + V + +G + Y +L++ + +A + + + G+
Sbjct: 275 GFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTA 334
Query: 198 ELFRHNKLV 206
+ +N ++
Sbjct: 335 NVQSYNIMI 343
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 21/200 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M E G + N ++ A+I+ + G+ + ++ + +M + C PN T +++ C
Sbjct: 571 LLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLC 630
Query: 70 FAGLVDESKEQFQEIKSS---GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
AGL+D+++ E+K + L C A+ S + + G+L+EM +
Sbjct: 631 AAGLLDKARLLLGEMKQTYWPKYLQGYRC-----AIQGFSKSFIASLGILEEMESYGTVP 685
Query: 127 IHQVTGQMI-------KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
I V G +I + E E + +M+E V + + Y +L++AL
Sbjct: 686 IAPVYGMLIDCFSKAGRLEIAMELHKEMME-VPSSVKTDN-----DMYASLIQALCLASQ 739
Query: 180 RERAARVLDEATKRGLFPEL 199
E A R+ E T+RG PEL
Sbjct: 740 VEEAFRLYSEMTRRGFVPEL 759
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 16/221 (7%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
+A N ++ A+++ + + + A + M C+PN +A++ +C AG +D ++
Sbjct: 440 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 499
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQ 133
E F ++ G LPSV Y L+ K R D A +L +M N ++ + G
Sbjct: 500 EVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 559
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
GE E +++ + +K G + Y AL++ L G + + + + +++
Sbjct: 560 CRIGE--SEKALKLLSLMEEK----GCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRK 613
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234
G P N + + V ++ + G + L +M + +
Sbjct: 614 GCSP-----NYVTYRVLINHLCAAGLLDKARLLLGEMKQTY 649
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + ++ M G ++ +++ VI + E+A + EM+ V P+ T
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 326
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +C AGL+++++ F+E++S G P+V+ Y L+ Y K+ + A + M
Sbjct: 327 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 384
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 52/248 (20%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M GV + ++ +I++F + G E+A + EM V C P T A++ Y
Sbjct: 310 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 369
Query: 70 FAGLVDESKEQFQEIKSSG----------------------------------------- 88
A V ++ + F + +G
Sbjct: 370 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 429
Query: 89 ----------ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE 138
+ P+V+ Y L+ K+++ D A+ LLD M ++ H V +I G
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDG- 488
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
F + VF ++ GY + Y +L++ ++ G + A +VL + K P
Sbjct: 489 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 548
Query: 199 LFRHNKLV 206
+ + ++
Sbjct: 549 VVTYTAMI 556
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Q + +M++ G + ++ ++I+ + GR + A+K +M K C PN T
Sbjct: 492 AGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVT 551
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ C G +++ + ++ G P+V+ Y L+ K+ + D + L +M
Sbjct: 552 YTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQM 610
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
G+F++A + EM + P+ T V++ C A V+++ FQE+K G+ P V Y
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 326
Query: 97 CMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ + K+ + A L +EM +
Sbjct: 327 TILIDSFCKAGLIEQAQWLFEEMRS 351
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV--RCDPNERTLEAVLSV 67
IL M G + + +I+ F + GR E A++ + EM +V + +++
Sbjct: 674 ILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQA 733
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLLDEM 119
C A V+E+ + E+ G +P + + L+ + +WD+A YG+ E+
Sbjct: 734 LCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEV 789
>gi|449444598|ref|XP_004140061.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27270-like [Cucumis sativus]
Length = 1062
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 97/233 (41%), Gaps = 34/233 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ + ++ G+ ++ +FN I+A +GG+ A + Y M + P+ +T
Sbjct: 751 GGKHRVAENVVRASLNCGLELDTVAFNTFIKAMLEGGKLHFASRIYEHMIALGIVPSIQT 810
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
++SVY +D++ E F +SSG+ P Y L++ Y K+ + +A L EM
Sbjct: 811 YNTMISVYGRGRKLDKAVEMFNAARSSGLSPDEKAYTNLISCYGKAGKTHEASLLFKEML 870
Query: 120 -------------HTNRISN--IHQVTGQMIKG------------------EFDDESNWQ 146
N +N +H+ T ++K + +
Sbjct: 871 EEGVKPGMVSYNIMVNVYANAGLHEETENLLKAMEQDAIVPDSFTYFSLIRAYTQSCKYS 930
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
E + + + +G Y+ LL AL G+ +A RV DE GL P++
Sbjct: 931 EAEKIINSMQEKGIPTTCAHYDLLLSALAKAGMIRKAERVYDELQTAGLSPDV 983
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 64/135 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + + + +M E GV + ++ VI + + G EEA K + EM+ P E T
Sbjct: 273 GLHAKVKELWMQMVEIGVTFSDFTYTVVINSLVKEGHSEEAFKVFNEMKNCGFIPEEVTY 332
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S+ DE +++++ I+PS LL ++ K+ + A L EM +
Sbjct: 333 NLLISLSIKRENSDEVLRLYKDMRDKDIVPSNYTCSSLLTLFYKNGDYSKALSLFSEMES 392
Query: 122 NRISNIHQVTGQMIK 136
++ + G +I+
Sbjct: 393 KKVVVDEVIYGLLIR 407
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 54/103 (52%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL++E + +L M + + +S ++ ++I A+ Q ++ EA K M++
Sbjct: 891 AGLHEETENLLKAMEQDAIVPDSFTYFSLIRAYTQSCKYSEAEKIINSMQEKGIPTTCAH 950
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103
+ +LS AG++ +++ + E++++G+ P V C L+ Y
Sbjct: 951 YDLLLSALAKAGMIRKAERVYDELQTAGLSPDVTCNRTLMRGY 993
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 57/140 (40%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + M E GV S+N ++ + G EE ME+ P+ T
Sbjct: 856 AGKTHEASLLFKEMLEEGVKPGMVSYNIMVNVYANAGLHEETENLLKAMEQDAIVPDSFT 915
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ Y + E+++ ++ GI + Y +LL+ AK+ A + DE+
Sbjct: 916 YFSLIRAYTQSCKYSEAEKIINSMQEKGIPTTCAHYDLLLSALAKAGMIRKAERVYDELQ 975
Query: 121 TNRISNIHQVTGQMIKGEFD 140
T +S +++G D
Sbjct: 976 TAGLSPDVTCNRTLMRGYLD 995
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/111 (18%), Positives = 56/111 (50%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + + ++ + ++++ F + G + +A+ + EME + +E ++ +Y GL
Sbjct: 355 MRDKDIVPSNYTCSSLLTLFYKNGDYSKALSLFSEMESKKVVVDEVIYGLLIRIYGKLGL 414
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+++ + F+E++ G+L Y + V+ S ++ A +++ M + I
Sbjct: 415 YEDAHKTFEEMEQLGLLTDEKSYLAMAQVHLNSRNFEKALDIIELMKSRNI 465
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + M G ++N +I + +E ++ Y +M P+ T
Sbjct: 308 GHSEEAFKVFNEMKNCGFIPEEVTYNLLISLSIKRENSDEVLRLYKDMRDKDIVPSNYTC 367
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++L+++ G ++ F E++S ++ + Y +L+ +Y K ++DA+ +EM
Sbjct: 368 SSLLTLFYKNGDYSKALSLFSEMESKKVVVDEVIYGLLIRIYGKLGLYEDAHKTFEEM 425
>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 680
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
L+KE + ++ M+E+GV+ N+ S++ ++ + + +F EA+ + EM++V C + T
Sbjct: 275 AKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTT 334
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ VY +V E+ F ++ I P+V+ Y +L VY ++ + +A L M
Sbjct: 335 CNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQ 394
Query: 121 TNRISNIHQVTGQMIK 136
I MIK
Sbjct: 395 RKDIEQNVVTYNTMIK 410
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 4/145 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N +I+ + + E+A EM+ +PN T
Sbjct: 382 LFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYS 441
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ AG +D + FQ+++SSG+ + Y ++ Y + A LL E+
Sbjct: 442 TIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLP 501
Query: 123 RISNIHQVTGQMI--KGEFDDESNW 145
NI + T I K +E+ W
Sbjct: 502 --DNIPRETAITILAKAGSTEEATW 524
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 64/118 (54%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G++ + L +M + V+ + ++ +IE R+ + +AI + +++ P+
Sbjct: 206 GMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAY 265
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++++VY A L E++ +E+ +G+ P+ + Y LL+VY +++++ +A + EM
Sbjct: 266 NSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEM 323
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 103/217 (47%), Gaps = 6/217 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L M + G + ++ ++N +I+ F GR ++A +V ME + + +
Sbjct: 322 GKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSY 381
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC +G + E+K+ ++E+ I+P+V+ Y LL + + DA+ L EM
Sbjct: 382 NVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKV 441
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ ++ ++ G + + +E +F L + ++ +N L++ L E
Sbjct: 442 HDLTPESCTYNILLDGLCKNNHLSEAME-LFHYLENHDFQPSIQIFNCLIDGLCKARKIE 500
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A + + + GL P N + ++V +H + + G
Sbjct: 501 IARELFNRLSHEGLEP-----NVITYTVMIHGLCKSG 532
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 7/204 (3%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L M G + N+ +F ++++ G R EA +M ++ PN T +L+
Sbjct: 148 AVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGL 207
Query: 69 CFAGLVDESKEQFQEIKSSG------ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
C G + + +E+ + I P+++CYC ++ K D L EM
Sbjct: 208 CMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGR 267
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
IS +I G W+ + +F+++ EG + +N L++AL G E
Sbjct: 268 GISPDVVAYSSIIHG-MCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEE 326
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A +L +RG P+ F +N L+
Sbjct: 327 ANHLLKLMIQRGESPDTFTYNTLI 350
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 48/107 (44%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +R+S G+ N ++ +I + G+ E A ++ ME+ C PN T ++ +C
Sbjct: 505 LFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFC 564
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+ + E QE+ P +++ + +K ++ + LL
Sbjct: 565 QNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLL 611
>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
Length = 820
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 106/223 (47%), Gaps = 15/223 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M G ++++ S+ A+IE F + GR +EA++ + EM + P+ T A++ C
Sbjct: 186 LFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ----PDMYTHAALVKGLC 241
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +E Q++K G P+ Y L+ ++ + + ++A +L+EM + +
Sbjct: 242 DAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPC-V 300
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT ++ + E VF+ + +G + YNA+++ G +A +LD+
Sbjct: 301 VTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQ 360
Query: 190 ATKRGLFPELFRHNKLV--WSVDVH--------RMWEGGAYTA 222
+ G+ P++ +N L+ +D H R+ EG A
Sbjct: 361 MRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAA 403
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 88/207 (42%), Gaps = 11/207 (5%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + IL+ M +SG+ + V+ A+ + GR A++ + M C+PN T A+
Sbjct: 282 EEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAI 341
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ +C AG V ++ +++ G+ P V+ Y +L+ A+ LL M N +
Sbjct: 342 VQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGL 401
Query: 125 SNIHQVTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +I G+ D+ + +FD L G +N ++ L G
Sbjct: 402 AADQYTYNVLIDALCKTGKVDEACS------LFDGLEYRGIRPNSVTFNTVINGLCKAGK 455
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A L+ G P+ + ++ +
Sbjct: 456 FDVACTFLENMISAGYAPDTYTYSPFI 482
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 102/237 (43%), Gaps = 20/237 (8%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E +L +M E G + ++ A+++ + + + EEA K EM P T
Sbjct: 243 AGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVT 302
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ YC G + + F+ ++ G P+V Y ++ + + + A LLD+M
Sbjct: 303 CTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMR 362
Query: 121 -----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG--MRFYNALLEA 173
+ ++ + GQ I G S ++++ + EG GL YN L++A
Sbjct: 363 ECGVEPDVVTYNLLIRGQCIDGHIG--SAFRLLRLM------EGNGLAADQYTYNVLIDA 414
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
L G + A + D RG+ P N + ++ ++ + + G + +L M
Sbjct: 415 LCKTGKVDEACSLFDGLEYRGIRP-----NSVTFNTVINGLCKAGKFDVACTFLENM 466
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 81/197 (41%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G+A + ++N +I+A + G+ +EA + +E PN T V++ C
Sbjct: 392 LLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLC 451
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG D + + + S+G P Y + K+ + +DEM +
Sbjct: 452 KAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKP-ST 510
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V ++ +E N+ + ++ ++ +G + Y + A G + A V+ E
Sbjct: 511 VNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTE 570
Query: 190 ATKRGLFPELFRHNKLV 206
K + +N L+
Sbjct: 571 MKKCRTIVDAMAYNTLI 587
>gi|410110115|gb|AFV61137.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
hederifolia]
Length = 364
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 37 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 96
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 97 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 156
Query: 123 RI 124
I
Sbjct: 157 SI 158
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 106 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTY 165
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 166 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 225
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 226 SGVE-IDQILFQ 236
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 142 LFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 201
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 202 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 261
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 262 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 312
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 313 KYSNVVEVFDKMRGLGYFPD 332
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 45/81 (55%)
Query: 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM 98
+ +AI + +++ P+ A+++V+ A L E++ E+K++G++P+ Y
Sbjct: 3 YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 62
Query: 99 LLAVYAKSNRWDDAYGLLDEM 119
LL +Y ++ ++ +A + EM
Sbjct: 63 LLTMYVENKKFLEALSVFSEM 83
>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +L M + + N F A+I+ F + G EA Y EM + PN T
Sbjct: 233 GRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTY 292
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C G + ++K F + S G P V+ Y L+ + KS R +D L EM
Sbjct: 293 NSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTY 352
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G + + + VF+++ G + YN LL+ L G E
Sbjct: 353 QGLVGDAFTYNTLIHG-YCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIE 411
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A ++++ K + ++ +N ++
Sbjct: 412 KALVMVEDLQKSEMDVDIITYNIII 436
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 3/207 (1%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G + + +++ F QG RF+EA+ M+ PN V++ C
Sbjct: 139 KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 198
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVT 131
++ + E F ++ GI + Y L++ + S RW DA LL +M +I N+ T
Sbjct: 199 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 258
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+ F E N ++ ++ + YN+L+ G A + D
Sbjct: 259 ALI--DTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMV 316
Query: 192 KRGLFPELFRHNKLVWSVDVHRMWEGG 218
+G FP++ +N L+ + E G
Sbjct: 317 SKGCFPDVVTYNTLITGFCKSKRVEDG 343
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 10/202 (4%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
C+ + SR S V F V+ + +F+ I Y +ME + + + ++
Sbjct: 68 CEMLQSRPIPSIV-----DFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIH 122
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+C + + ++ G PS++ LL + + NR+ +A L+D M
Sbjct: 123 CFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVP 182
Query: 127 IHQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G + D +N V Y +K +G YN L+ L G AA
Sbjct: 183 NVVIYNTVINGLCKNRDLNNALEVFYCMEK---KGIRADAVTYNTLISGLSNSGRWTDAA 239
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
R+L + KR + P + L+
Sbjct: 240 RLLRDMVKRKIDPNVIFFTALI 261
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/94 (19%), Positives = 46/94 (48%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +RM + GV+ + ++N +++ G+ E+A+ +++K D + T ++
Sbjct: 379 QKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQG 438
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101
C + E+ F+ + G+ P + Y +++
Sbjct: 439 LCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMIS 472
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 6/225 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +L M + G+ N ++N++IE F G A + +V M C+P+ ++
Sbjct: 330 EAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLI 389
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ YC V+E+ + + + G P V Y LL + + DA L M I
Sbjct: 390 NGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIP 449
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ G + G + ++ +E +F+KL L + +N L++ L G E A
Sbjct: 450 GDLYIYGIFLNGLCKNGCLFEAME-LFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWE 508
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+ ++ + L P++ +N + +H GG ++ KM
Sbjct: 509 LFEKLPQEELQPDVVTYN-----IMIHEFCRGGQVVKANILFQKM 548
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 90/204 (44%), Gaps = 7/204 (3%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+++ + G + ++ +I+ R +A + M+K+ C PN T ++
Sbjct: 152 AVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGL 211
Query: 69 CFAGLVDESKEQFQEIKSSGIL------PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
C G + + + QE+ + L P V+ Y +++ K R D+A L +EM
Sbjct: 212 CRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQ 271
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
++ +I G F W+ + +F+++ +G + +N L++ L G
Sbjct: 272 GMTPTVISYTSLIHG-FCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIE 330
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A +L+ +RG+ P L +N L+
Sbjct: 331 AKDLLEVMIQRGIVPNLLTYNSLI 354
>gi|410110079|gb|AFV61119.1| pentatricopeptide repeat-containing protein 123, partial [Junellia
succulentifolia]
Length = 382
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+++ ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 55 LFRDARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 114
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 115 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 174
Query: 123 RI 124
I
Sbjct: 175 NI 176
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 243
Query: 122 NRISNIHQVTGQ 133
+ + +I QV Q
Sbjct: 244 SGV-DIDQVLYQ 254
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 160 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 219
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 220 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 277
Query: 123 RISNI 127
R NI
Sbjct: 278 RPDNI 282
>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
Length = 577
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 4/199 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M G+A N ++A+I + + + A++ +M+K C P+ T ++ C
Sbjct: 148 IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLC 207
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-YGLLDEMHTNRIS-NI 127
+G V+ ++ F E+ +G P V Y +L++ + K+ D A + L E N + +I
Sbjct: 208 KSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDI 267
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
H T I + + +K+ G + YNALL L +G E A +L
Sbjct: 268 HTYTA--IVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 325
Query: 188 DEATKRGLFPELFRHNKLV 206
+ G P++ + L+
Sbjct: 326 RKIVDNGCTPDVVTYTSLI 344
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 64/128 (50%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M G+A N ++A+I + + + A++ +M+K C P+ T ++ C
Sbjct: 429 IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLC 488
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G V+ ++ F E+ +G P V Y +L++ + K+ D A G+ D+M ++R S
Sbjct: 489 KSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVV 548
Query: 130 VTGQMIKG 137
G +I G
Sbjct: 549 TYGALISG 556
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 84/201 (41%), Gaps = 6/201 (2%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+G + ++ A+++ + + EEA+ ++ C P T A+L+ C G ++E
Sbjct: 261 NGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE 320
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136
+ + ++I +G P V+ Y L+ K R +AY L EM ++ + V +
Sbjct: 321 AIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLA-LDTVCYTALI 379
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
E V+ + G + + +++ L G A R+ RGL
Sbjct: 380 RELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLA 439
Query: 197 PELFRHNKLVWSVDVHRMWEG 217
P N++V+S +H + +
Sbjct: 440 P-----NEVVYSALIHGLCKA 455
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 20/225 (8%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + M+ G+A ++ + A+I Q G+ +A Y M C P+ TL ++
Sbjct: 74 EAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMI 133
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
AG + + F+ +++ G+ P+ + Y L+ K+ + D A +L +M
Sbjct: 134 DGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK-KAFC 192
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+T ++ + + FD++ G + YN L+ G + A+
Sbjct: 193 TPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASH 252
Query: 186 VL-DEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNK 229
L E T G ++D+H YTAI WL K
Sbjct: 253 SLAQETTING------------CTIDIH------TYTAIVDWLAK 279
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 86/210 (40%), Gaps = 10/210 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + ++ M+ G + + + +I+ + GR A++ + ME PNE
Sbjct: 105 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVY 164
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
A++ C A +D + E ++K + P + Y +L+ KS + A DEM
Sbjct: 165 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLE 224
Query: 121 TNRISNIHQ----VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+++ ++G G D S+ E + G + + Y A+++ L
Sbjct: 225 AGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTIN-----GCTIDIHTYTAIVDWLAK 279
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
E A ++++ T G P + +N L+
Sbjct: 280 NKKIEEAVALMEKITANGCTPTIATYNALL 309
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 6/180 (3%)
Query: 38 RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC 97
+ EEA+ ++ C P T A+L+ C G ++E+ + ++I +G P V+ Y
Sbjct: 1 KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60
Query: 98 MLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC 157
L+ K R +AY L EM ++ + V + E V+ +
Sbjct: 61 SLIDGLGKEKRSFEAYKLFKEMALRGLA-LDTVCYTALIRELLQTGKIPQASSVYKTMTS 119
Query: 158 EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEG 217
G + + +++ L G A R+ RGL P N++V+S +H + +
Sbjct: 120 HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAP-----NEVVYSALIHGLCKA 174
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 6/227 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + M+ G+A ++ + A+I Q G+ +A Y M C P+ TL ++
Sbjct: 355 EAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMI 414
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
AG + + F+ +++ G+ P+ + Y L+ K+ + D A +L +M
Sbjct: 415 DGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK-KAFC 473
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+T ++ + + FD++ G + YN L+ G + A
Sbjct: 474 TPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACG 533
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
V D+ + + + L+ + R T S++ M E
Sbjct: 534 VFDDMSSSRCSANVVTYGALISGLCKRRQL-----TKASLYFQHMKE 575
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 1/173 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + ++ M+ G + + + +I+ + GR A++ + ME PNE
Sbjct: 386 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVY 445
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C A +D + E ++K + P + Y +L+ KS + A DEM
Sbjct: 446 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLE 505
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+I G F N VFD ++ + Y AL+ L
Sbjct: 506 AGCKPDVYTYNILISG-FCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGL 557
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 91/239 (38%), Gaps = 40/239 (16%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN------- 57
+E A++ +++ +G ++NA++ + GR EEAI ++ C P+
Sbjct: 284 EEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 343
Query: 58 -------ERTLEA------------VLSVYCFAGLVDE---------SKEQFQEIKSSGI 89
+R+ EA L C+ L+ E + ++ + S G
Sbjct: 344 IDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGC 403
Query: 90 LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVE 149
+P V+ ++ +K+ R A + M ++ V +I G +E
Sbjct: 404 VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALE 463
Query: 150 YV--FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ K C + YN L++ L G E A DE + G P+++ +N L+
Sbjct: 464 MLAQMKKAFCTPDTI---TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILI 519
>gi|410110073|gb|AFV61116.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
virgata]
Length = 424
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 101 LFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 160
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 161 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 220
Query: 123 RI 124
I
Sbjct: 221 NI 222
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ N T
Sbjct: 170 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTY 229
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 230 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 289
Query: 122 NRISNIHQVTGQ 133
+ + I QV Q
Sbjct: 290 SGVE-IDQVLYQ 300
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 206 LFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 265
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT- 121
++S++ G +D + FQ+++SSG+ + Y + Y ++ A LL E+ +
Sbjct: 266 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMXVAYERAGLVAHAKRLLHELKSP 325
Query: 122 ---NRISNIHQVTG 132
R + IH + G
Sbjct: 326 DNIPRDTAIHILAG 339
>gi|428179078|gb|EKX47950.1| hypothetical protein GUITHDRAFT_136922 [Guillardia theta CCMP2712]
Length = 714
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 1/212 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +KE IL + + V + +++ +I F + ++ AI+ Y +M + + PN T
Sbjct: 285 GKWKESYDILFEIEDQHVITDVITYSTLISTFAKTRKYSLAIEMYEKMMERQVMPNVITY 344
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ A ++ F ++++ GI P+V+ Y ++A + W A+ L EM
Sbjct: 345 NSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTYSTMIASCRSKDNWVTAFDLFLEMIR 404
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I +T + W+ V + + G L +R Y+A++ G +
Sbjct: 405 KEIPP-DPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYSAVVHVCGQAGRLD 463
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHR 213
A R+LDE + G+ P + L+ + V R
Sbjct: 464 DAFRILDECKRDGIKPNVIMFTALIHACKVAR 495
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 95/218 (43%), Gaps = 12/218 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV- 67
AIL MSE + R+ +F+ +I + G+++EA EM+ PN T A+++V
Sbjct: 176 AILEMMSEDQIERDVFTFSTLISLCDRCGKYDEAFALKEEMDAKNVSPNIYTFNALIAVC 235
Query: 68 -YCFAGLVDESKEQ---------FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
A + K Q F E K++G+ P ++ Y LL VY + +W ++Y +L
Sbjct: 236 KNSLATSLMSRKRQNTLTIAQILFAEAKAAGLRPDIVTYNSLLGVYMEMGKWKESYDILF 295
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
E+ + +T + F + + +++K+ + YN+L+ A
Sbjct: 296 EIEDQHVIT-DVITYSTLISTFAKTRKYSLAIEMYEKMMERQVMPNVITYNSLIFACLRA 354
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
+A D+ +G+ P + ++ ++ S W
Sbjct: 355 NNFSQAFAFFDDMQAQGISPNVVTYSTMIASCRSKDNW 392
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 10/196 (5%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+F+A++ + ++E+A+ M+ N R AV+ V AG +D++ E
Sbjct: 413 TFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYSAVVHVCGQAGRLDDAFRILDEC 472
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
K GI P+V+ + L+ + D A+ +L+ M + ++ + VT ++ G + N
Sbjct: 473 KRDGIKPNVIMFTALIHACKVARDLDRAFRVLELMKEDHVTP-NLVTFNVLLGTCEVVGN 531
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE--RAARVLDEATKRGLFPELFRH 202
V L G+ ++ +N L++ C+ E +A V + + + P L
Sbjct: 532 STCAFQVVGLLQEYGFRANLQTFNTLIKT--CVRSHEWQKAFEVYSQMQLQRIRPSLSTF 589
Query: 203 NKLVWSVDVHRMWEGG 218
N L + + EGG
Sbjct: 590 NALSMAAE-----EGG 600
>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic [Vitis vinifera]
Length = 701
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 114/265 (43%), Gaps = 31/265 (11%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERTLEAVLSVY 68
+ M E G+ + +N ++ G EEA + +M+ C P+ T +++++Y
Sbjct: 373 VYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIY 432
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+G V E++ + +G P++ L+ Y K+NR D+ D + I+
Sbjct: 433 SCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDD 492
Query: 129 QVTGQMI-------KGEFD------DESNWQM---VEYVFDKLNCEGY------------ 160
+ G M+ K E D++N ++ V+ + ++ N EG
Sbjct: 493 RFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQNGEGTFRKEASELFDSI 552
Query: 161 --GLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+ + N L++ L L E+A + D ++ ++ + WS+ + + G
Sbjct: 553 SADVKKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSKSPTQWSLHLKSLSLGA 612
Query: 219 AYTAISVWLNKMYEMFMMGEDLPQL 243
A TA+ +W+N + + +GE+LP +
Sbjct: 613 ALTALHIWMNDLSKAVEVGEELPAV 637
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + C + M GV N +N +++A + R +A Y EM P+ T
Sbjct: 294 SGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGT 353
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L Y A +++ ++E+K G+ SV+ Y LLA+ A ++A + ++M
Sbjct: 354 YAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMK 413
Query: 121 TN 122
++
Sbjct: 414 SS 415
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 2/183 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+F+ +I + G F+ + Y EM+ + PN +L A ++K ++E+
Sbjct: 283 TFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEM 342
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
++G+ PS Y LL Y ++ +DA + EM + + V + D
Sbjct: 343 TNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGL-ELSVVLYNTLLAMCADVGY 401
Query: 145 WQMVEYVFDKLNCEGYGLGMRF-YNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+ +F+ + G + + +++L+ C G A +L+ + G P +F
Sbjct: 402 TEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLT 461
Query: 204 KLV 206
L+
Sbjct: 462 SLI 464
>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
Length = 701
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 114/265 (43%), Gaps = 31/265 (11%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERTLEAVLSVY 68
+ M E G+ + +N ++ G EEA + +M+ C P+ T +++++Y
Sbjct: 373 VYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIY 432
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+G V E++ + +G P++ L+ Y K+NR D+ D + I+
Sbjct: 433 SCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDD 492
Query: 129 QVTGQMI-------KGEFD------DESNWQM---VEYVFDKLNCEGY------------ 160
+ G M+ K E D++N ++ V+ + ++ N EG
Sbjct: 493 RFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQNGEGTFRKEASELFDSI 552
Query: 161 --GLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+ + N L++ L L E+A + D ++ ++ + WS+ + + G
Sbjct: 553 SADVXKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSKSPTQWSLHLKSLSLGA 612
Query: 219 AYTAISVWLNKMYEMFMMGEDLPQL 243
A TA+ +W+N + + +GE+LP +
Sbjct: 613 ALTALHIWMNDLSKAVEVGEELPAV 637
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + C + M GV N +N +++A + R +A Y EM + T
Sbjct: 294 SGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGT 353
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L Y A +++ ++E+K G+ SV+ Y LLA+ A ++A + ++M
Sbjct: 354 YAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMK 413
Query: 121 TN 122
++
Sbjct: 414 SS 415
>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g51965, mitochondrial; Flags: Precursor
gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
thaliana]
gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
Length = 650
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 63/110 (57%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M + G + + ++N +I +F + G +EAI + E+E+ C P+ + ++++
Sbjct: 464 LFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLG 523
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G VDE+ +F+E++ G+ P V+ Y L+ + K+ R + AY L +EM
Sbjct: 524 KNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEM 573
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 3/199 (1%)
Query: 2 GLYKECQAI--LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
G K +AI LS++ E GV ++ +N V A + + + +M+K P+
Sbjct: 419 GAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIF 478
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T +++ + G VDE+ F+E++ S P ++ Y L+ K+ D+A+ EM
Sbjct: 479 TYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEM 538
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ N VT + F +M +F+++ +G + YN LL+ L G
Sbjct: 539 QEKGL-NPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGR 597
Query: 180 RERAARVLDEATKRGLFPE 198
A + + ++GL P+
Sbjct: 598 TAEAVDLYSKMKQQGLTPD 616
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 84/206 (40%), Gaps = 10/206 (4%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + M G+ N +N +++ +G ++AI+ + M + C PNE T +L
Sbjct: 288 EAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLL 347
Query: 66 SVYCFAG---LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ G +D E + + GI Y L+ +K +A+ L +M +
Sbjct: 348 NLLVAEGQLVRLDGVVEISKRYMTQGI------YSYLVRTLSKLGHVSEAHRLFCDMWSF 401
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ M++ + +E + K++ +G YN + AL L
Sbjct: 402 PVKGERDSYMSMLESLCGAGKTIEAIE-MLSKIHEKGVVTDTMMYNTVFSALGKLKQISH 460
Query: 183 AARVLDEATKRGLFPELFRHNKLVWS 208
+ ++ K G P++F +N L+ S
Sbjct: 461 IHDLFEKMKKDGPSPDIFTYNILIAS 486
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 21/200 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M E G + N ++ A+I+ + G+ + ++ + +M + C PN T +++ C
Sbjct: 571 LLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLC 630
Query: 70 FAGLVDESKEQFQEIKSS---GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
AGL+D+++ E+K + L C A+ S + + G+L+EM +
Sbjct: 631 AAGLLDKARLLLGEMKQTYWPKYLQGYRC-----AIQGFSKSFIASLGILEEMESYGTVP 685
Query: 127 IHQVTGQMI-------KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
I V G +I + E E + +M+E V + + Y +L++AL
Sbjct: 686 IAPVYGMLIDCFSKAGRLEIAMELHKEMME-VPSSVKTDN-----DMYASLIQALCLASQ 739
Query: 180 RERAARVLDEATKRGLFPEL 199
E A R+ E T+RG PEL
Sbjct: 740 VEEAFRLYSEMTRRGFVPEL 759
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 96/219 (43%), Gaps = 12/219 (5%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
+A N ++ A+++ + + + A + M C+PN +A++ +C AG +D ++
Sbjct: 440 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 499
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE 138
E F ++ G LPSV Y L+ K R D A +L +M + + MI G
Sbjct: 500 EVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 559
Query: 139 F---DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ E +++ + +K G + Y AL++ L G + + + + +++G
Sbjct: 560 CRIGESEKALKLLSLMEEK----GCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGC 615
Query: 196 FPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234
P N + + V ++ + G + L +M + +
Sbjct: 616 SP-----NYVTYRVLINHLCAAGLLDKARLLLGEMKQTY 649
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + ++ M G ++ +++ VI + E+A + EM+ V P+ T
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 326
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +C AGL+++++ F+E++S G P+V+ Y L+ Y K+ + A + M
Sbjct: 327 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 384
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 52/248 (20%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M GV + ++ +I++F + G E+A + EM V C P T A++ Y
Sbjct: 310 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 369
Query: 70 FAGLVDESKEQFQEIKSSG----------------------------------------- 88
A V ++ + F + +G
Sbjct: 370 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 429
Query: 89 ----------ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE 138
+ P+V+ Y L+ K+++ D A+ LLD M ++ H V +I G
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDG- 488
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
F + VF ++ GY + Y +L++ ++ G + A +VL + K P
Sbjct: 489 FCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 548
Query: 199 LFRHNKLV 206
+ + ++
Sbjct: 549 VVTYTAMI 556
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +M++ G + ++ ++I+ + GR + A+K +M K C PN T A++
Sbjct: 499 QEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDG 558
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G +++ + ++ G P+V+ Y L+ K+ + D + L +M
Sbjct: 559 LCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQM 610
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
G+F++A + EM + P+ T V++ C A V+++ FQE+K G+ P V Y
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 326
Query: 97 CMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ + K+ + A L +EM +
Sbjct: 327 TILIDSFCKAGLIEQAQWLFEEMRS 351
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV--RCDPNERTLEAVLS 66
IL M G + + +I+ F + GR E A++ + EM +V + +++
Sbjct: 673 GILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQ 732
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLLDE 118
C A V+E+ + E+ G +P + + L+ + +WD+A YG+ E
Sbjct: 733 ALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHE 788
>gi|326492688|dbj|BAJ90200.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 325
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 39/257 (15%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+G + +++ V+E G +EA ++EM + P+E ++ ++ AG VD+
Sbjct: 1 AGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRR-DWAPDEPVYGLLVDLWGKAGNVDK 59
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----------HTNRIS 125
+ + + G+ P+V LL+ + K NR+ DAYG+L M +T +S
Sbjct: 60 ALGWYHAMLQDGLQPNVPTCNSLLSAFLKLNRFQDAYGVLQNMLAQGLVPSLQTYTLLLS 119
Query: 126 NIHQVTGQM--------IKG-------------EFDDESNWQMVEYVFDKLNCEGYGLGM 164
QM I G E E+ Y D ++ E
Sbjct: 120 CCTDAHAQMGLCCQLMAITGHPAHMFLLYLPDAEPGGENVRDHARYFLDMMHSEDRESKR 179
Query: 165 RFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH-NKLVWSVDVHRMWEGGAYTAI 223
+A+++ L GL+E A + + A +R ++P+ R + W +++H M EG A TA+
Sbjct: 180 GIMDAVIDFLHKSGLKEEAGFIWEVAAQRNVYPDSVREKSSSYWLINLHLMSEGTAVTAL 239
Query: 224 S---VWLNKMYEMFMMG 237
S W ++ +M +MG
Sbjct: 240 SRTLAWFHR--QMLLMG 254
>gi|255661190|gb|ACU25764.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 426
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 90/208 (43%), Gaps = 38/208 (18%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVMPNTVSYSTLLTMYVENKKFLEALTVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR- 212
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
NI Q N Y M Y LE E+
Sbjct: 213 --KNIEQ--------------------------NVVTYNSMMMIYGKTLE-------HEK 237
Query: 183 AARVLDEATKRGLFPELFRHNKL--VWS 208
A ++ E RG+ P ++ + +WS
Sbjct: 238 ANNLIQEMQSRGIEPNSITYSTIISIWS 265
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y ++++++K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWSKIGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + I QV Q +
Sbjct: 283 SGVE-IDQVLYQTM 295
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRP 318
Query: 120 -HTNRISNIHQVTG 132
+ R + IH + G
Sbjct: 319 DNIPRDTAIHILAG 332
>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
Length = 880
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 4/198 (2%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ M + G+ + +N +I AF G + AI+ EM+K+R P RT ++ Y
Sbjct: 540 AVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGY 599
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+G + S E F ++ G +P+V + L+ + + A +LDEM +S
Sbjct: 600 AKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQ---AVEILDEMTLAGVSANE 656
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++++G + EY F +L EG + + Y ALL+A G + A V
Sbjct: 657 HTYTKIMQGYASVGDTGKAFEY-FTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTK 715
Query: 189 EATKRGLFPELFRHNKLV 206
E + R + F +N L+
Sbjct: 716 EMSARNIPRNSFVYNILI 733
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RNS +N +I+ + + G EA +M+K P+ T
Sbjct: 705 GRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTY 764
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ +S AG ++ + + +E+++ G+ P++ Y L+ +A+++ + A +EM
Sbjct: 765 TSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEM 822
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M + GV + ++ + I A + G A + EME + PN +T ++
Sbjct: 744 EAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLI 803
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ A L +++ ++E+K+ GI P Y C+L ++ ++++
Sbjct: 804 KGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRAS 846
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 15/178 (8%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY-----CFAGLVDE 76
N+ + +I A Q E A EME E ++A +++Y + + DE
Sbjct: 413 NASIYGKIIYAHCQTCNMERAEALVREME-------EEGIDAPIAIYHTMMDGYTMVADE 465
Query: 77 SKE--QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134
K F+ +K G P+V+ Y L+ +Y K + A + M + + + M
Sbjct: 466 KKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMM 525
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
I G F +W VF+ + EG + YN ++ A +G +RA + + E K
Sbjct: 526 ING-FVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQK 582
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 18/174 (10%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N D++ AVI AF EK+ P+ ++ Y G + ++E F
Sbjct: 290 NGDNWQAVISAF----------------EKI-SKPSRTEFGLMVKFYGRRGDMHRARETF 332
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+ +++ GI P+ Y L+ YA D+A + +M I + VT +I G F
Sbjct: 333 ERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGI-EMSLVTYSVIVGGFSK 391
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ + +Y FD+ L Y ++ A ERA ++ E + G+
Sbjct: 392 AGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGI 445
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 6/194 (3%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E GV N +++ +I F + + A + +M K P+ ++S +C G
Sbjct: 510 MKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGN 569
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-NRISNIHQVTG 132
+D + + +E++ P+ + ++ YAKS + + D M + +H G
Sbjct: 570 MDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNG 629
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+I G + Q VE + D++ G Y +++ +G +A
Sbjct: 630 -LINGLVEKR---QAVE-ILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQN 684
Query: 193 RGLFPELFRHNKLV 206
GL ++F + L+
Sbjct: 685 EGLDVDIFTYEALL 698
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 71/170 (41%), Gaps = 13/170 (7%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
+R+ G+ + ++ A+++A + GR + A+ EM N ++ +
Sbjct: 679 FTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWAR 738
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G V E+ + Q++K G+ P + Y ++ +K+ + A ++EM + +
Sbjct: 739 RGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKT 798
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNC--EGYGLGMR----FYNALLEAL 174
+IKG W L+C E +G++ Y+ LL +L
Sbjct: 799 YTTLIKG-------WARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSL 841
>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Cucumis sativus]
Length = 707
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 3/201 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR--CDPNE 58
G Y + + M + + ++ + N VI + ++ +AI+ + M + R C P+
Sbjct: 148 GAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDV 207
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T +++ +Y G +++ K F + + GI P+++ Y L++ YA +A+ + DE
Sbjct: 208 VTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDE 267
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M + V+ + F VFD + + YNAL++A G
Sbjct: 268 MKRSGFCP-DVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNG 326
Query: 179 LRERAARVLDEATKRGLFPEL 199
+A +L E + G+ P +
Sbjct: 327 YLPQAVDILREMEQDGIHPNV 347
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 19/216 (8%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ I+ M + + + +FN +I A G + EA++ +M P+ T
Sbjct: 78 AGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVT 137
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
VLS Y ++ F+ +K + I P +++ K ++ A + M
Sbjct: 138 HNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMR 197
Query: 121 TNR----------ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
R S IH + ++G+ +D + VF + EG + YNAL
Sbjct: 198 EKRSECRPDVVTFTSIIHLYS---VRGQIED------CKAVFSTMLAEGIKPNIVSYNAL 248
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ A G+ + A V DE + G P++ + L+
Sbjct: 249 ISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLI 284
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE ++ M SG + S+ ++I F + + A + + M++ +C PN +
Sbjct: 256 GMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSY 315
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE--- 118
A++ Y G + ++ + +E++ GI P+V+ C LLA + + + +L
Sbjct: 316 NALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAEL 375
Query: 119 --MHTNRISNIHQVTGQMIKGEFDDESN 144
+H N I+ + M GE++ N
Sbjct: 376 RGIHLNTIACNSAIGSYMNIGEYEKAIN 403
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 35/151 (23%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++LS G+ N+ + N+ I ++ G +E+AI Y ME P+ T ++S
Sbjct: 368 SVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGC 427
Query: 69 C-----------FAGLVD------------------------ESKEQFQEIKSSGILPSV 93
C F ++D +++ F +K SG P +
Sbjct: 428 CRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDL 487
Query: 94 MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ Y ++ Y+ S W+ L EM N I
Sbjct: 488 VTYTAMINAYSASEMWEKVCALYQEMEANNI 518
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 20 ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKE 79
ARN D +N +I + R ++A + EM+K RC P+ T A+++ + AG +
Sbjct: 28 ARN-DIYNMMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALINAHGRAGQWRWATN 86
Query: 80 QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+++ + I PS + L+ W +A + +M N +
Sbjct: 87 IMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGV 131
>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 661
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 3/204 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+K+ I + G+ +N++S N +++ + E+A + Y+E+ K PN T
Sbjct: 170 WKDAVRIFDDLQFLGLEKNTESMNVLLDTLCKEKFVEQAREIYLEL-KHYIAPNAHTFNI 228
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ +C V+E+ QE+K G P V+ Y ++ Y + +D Y LLDEM
Sbjct: 229 LIHGWCNIRRVEEAHWTIQEMKGYGCRPCVISYSTIIQCYCQEQNFDRVYDLLDEMQAQN 288
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
S + VT I ++ V +++N G F+N+L+ L G + A
Sbjct: 289 CSP-NVVTYTTIMCALAKAEKFEEALQVVERMNAVGCRPDTLFFNSLIYTLGRAGRIDDA 347
Query: 184 ARVLDEA-TKRGLFPELFRHNKLV 206
V A K + P +N ++
Sbjct: 348 THVFKVAMPKASVAPNTSTYNSMI 371
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-VEMEKVRCDPNERTLE 62
++E ++ RM+ G ++ FN++I + GR ++A + V M K PN T
Sbjct: 309 FEEALQVVERMNAVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYN 368
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLL 100
+++S++C+ + + +E++ SG+ P + Y L+
Sbjct: 369 SMISMFCYYAQEERAFGILKEMEKSGLCKPDIQTYHPLI 407
>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
Length = 796
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 105/230 (45%), Gaps = 19/230 (8%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME--KVR-CDPNERTLEAVL 65
+L RMSE G N S+N +++ F R EEA++ M +VR C PN + V+
Sbjct: 152 VLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVI 211
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----H 120
+ + G VD++ F ++ GI P+V+ Y +++ K+ D A G+ +M
Sbjct: 212 NGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVR 271
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N ++ + G + G+ W+ V + +++ G Y LL+ L G
Sbjct: 272 PNIVTYTCLIHGYLSIGQ------WKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKC 325
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
A ++ D ++G+ P++ ++ + +H GA + + +L+ M
Sbjct: 326 TEARKLFDSMIRKGIKPDVS-----IYGIILHGYATKGALSEMHSFLDLM 370
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 7/201 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + Q ++ M G + S+NA+I G+ +EA K M V PNE T
Sbjct: 498 GRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTY 557
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L YC G +D++ FQE+ S+GI P V+ Y +L K+ R+ +A E++
Sbjct: 558 NTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEA----KELYL 613
Query: 122 NRISNIHQ---VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
N I++ Q T +I + +F L + + + +N ++ AL G
Sbjct: 614 NMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDG 673
Query: 179 LRERAARVLDEATKRGLFPEL 199
+E A + + GL P++
Sbjct: 674 RKEDAMNLFATISANGLVPDV 694
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + L M +G++ N FN V AF + EA+ + +M + PN
Sbjct: 358 GALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNY 417
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G VD+++ +F ++ + G+ P+++ + L+ ++W+ A L EM
Sbjct: 418 ATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEM-V 476
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N+ + + V I E + + D + G + YNAL+ +G +
Sbjct: 477 NQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTD 536
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A+++LD GL P +N L+
Sbjct: 537 EASKLLDIMLSVGLKPNECTYNTLL 561
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 1/196 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ N FN ++ GR +A + ME+V P+ + A++ +C G
Sbjct: 475 MVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGK 534
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
DE+ + + S G+ P+ Y LL Y + R DDAY + EM +N I+ +
Sbjct: 535 TDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNT 594
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ G F + E + + G + YN +L L + A ++ +
Sbjct: 595 ILHGLFKTRRFSEAKELYLNMIT-SGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSK 653
Query: 194 GLFPELFRHNKLVWSV 209
L ++ N ++ ++
Sbjct: 654 DLQVDIITFNIMIGAL 669
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 95/240 (39%), Gaps = 36/240 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCD---- 55
G +KE +L MS G+ + ++ +++ + G+ EA K + M + ++ D
Sbjct: 288 GQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIY 347
Query: 56 -----------------------------PNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
PN V + ++ E+ + F +++
Sbjct: 348 GIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQ 407
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
G+ P+V+ Y L+ K R DDA ++M ++ V ++ G W+
Sbjct: 408 QGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYG-LCTIDKWE 466
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+F ++ +G + F+N ++ L G +A R++D + G P++ +N L+
Sbjct: 467 KAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALI 526
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 1/192 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G A + S++ VI + GG ++ +K EM+ PN T +++ + C +G
Sbjct: 1 MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
VD+++ +E+ + GI+P + Y L+ + K AY L DEM RI
Sbjct: 61 VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G + VF+K+ G Y L++ G E+A + ++ +
Sbjct: 121 VICG-LCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQS 179
Query: 194 GLFPELFRHNKL 205
GL P + + L
Sbjct: 180 GLTPNVVTYTAL 191
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 1/209 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + + + ++ AVI + G+ EA K + +M +P+E T ++ YC
Sbjct: 102 LFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYC 161
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G ++++ ++ SG+ P+V+ Y L K + D A LL EM + ++
Sbjct: 162 KSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQ-LNI 220
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
T + N + + +++ G + L++A G +A +L E
Sbjct: 221 CTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLRE 280
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
RGL P + N L+ + M E G
Sbjct: 281 MLDRGLQPTVITFNVLMNGFCMSGMLEDG 309
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M G+ N ++N+++ + G +A+K EME P+ T ++ YC
Sbjct: 207 LLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYC 266
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
G + ++ E +E+ G+ P+V+ + +L+ + S +D LL
Sbjct: 267 KTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLL 313
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/206 (18%), Positives = 87/206 (42%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ ++ M G+ N ++N++I + G+ ++A + EM P+
Sbjct: 23 GGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVV 82
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ +C G + + + F E++ I+P + Y ++ + + +A + ++M
Sbjct: 83 YTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMF 142
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + +I G + + + +++ G + Y AL + L LG
Sbjct: 143 SRGVEPDEVTYTTLIDG-YCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQV 201
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A +L E +GL + +N LV
Sbjct: 202 DTANELLHEMCGKGLQLNICTYNSLV 227
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 1/181 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + G+ +FN ++ F G E+ + M + PN T +++ YC
Sbjct: 277 LLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYC 336
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ + E ++ + + G++P Y +L+ + K+ +A+ L EM + N+
Sbjct: 337 IRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEM-AEKGFNLTA 395
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ I F + +F+++ EG YN ++ + G E A + DE
Sbjct: 396 SSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDE 455
Query: 190 A 190
A
Sbjct: 456 A 456
>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 876
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 89/190 (46%), Gaps = 3/190 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M + G N ++N +I ++ + +A+ + EM++V C+P+ T ++ ++
Sbjct: 402 LLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHA 461
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIH 128
AG +D + E +Q ++++G+ P Y +++ K+ A+ L EM + N+
Sbjct: 462 KAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNL- 520
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT ++ N+Q ++ + G+ Y+ ++E L G + A V
Sbjct: 521 -VTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFS 579
Query: 189 EATKRGLFPE 198
E ++ P+
Sbjct: 580 EMKRKNWVPD 589
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 2/227 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +A+ S M + + +++ + + G E+A + Y M PN T
Sbjct: 569 GYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTC 628
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++LS + + ++ Q + G+ PS+ Y +LL+ ++ D G+ E+
Sbjct: 629 NSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTYTLLLSCCTEARSPYD-MGIYCELMA 687
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
H + D ++ D ++ E +A+++ L GL+E
Sbjct: 688 VTGHPAHMFLLSLPSAGPDGQNVRDHASKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKE 747
Query: 182 RAARVLDEATKRGLFPELFRHN-KLVWSVDVHRMWEGGAYTAISVWL 227
A V + A +R ++P+ + W +++H M +G A TA+S L
Sbjct: 748 EAGSVWEVAAQRNVYPDAVKEKGSCYWLINLHVMSDGTAVTALSRTL 794
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + M E G N ++N +I + ++ A+K Y +M+ P++ T
Sbjct: 498 AGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVT 557
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
V+ V G +DE++ F E+K +P Y +L+ ++ K+ + A+
Sbjct: 558 YSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAW 610
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 49/110 (44%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
+ G + ++ ++ + +F K +M K C PN T ++ Y A ++
Sbjct: 373 QPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLN 432
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
++ + F E++ G P + YC L+ ++AK+ D A + M +S
Sbjct: 433 DAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLS 482
>gi|255661188|gb|ACU25763.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 426
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQ 133
+ + I QV Q
Sbjct: 283 SGVE-IDQVLYQ 293
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT- 121
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+ +
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSP 318
Query: 122 ---NRISNIHQVTG 132
R + IH + G
Sbjct: 319 DNIPRDTAIHILAG 332
>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
[Vitis vinifera]
gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERT 60
G KE I +M + G + +FN +I+ + G EE +K M ++ PN+RT
Sbjct: 155 GNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRT 214
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +C + E+ ++ +SG+ P V+ Y L YA++ A G++ EM
Sbjct: 215 FNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQ 274
Query: 121 TNRISNIHQVTGQMIKG 137
NR+ + G +I G
Sbjct: 275 NNRVMPNERTCGIIING 291
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 86/200 (43%), Gaps = 2/200 (1%)
Query: 1 GGLYKECQAILSRMS-ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
G+ +EC +L MS E V N +FN++I A+ R EA +M P+
Sbjct: 189 AGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVV 248
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T + Y G ++ E++++ ++P+ +++ Y K + DA L M
Sbjct: 249 TYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRM 308
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + +IKG F D ++ V+ + G + ++ ++ A +GL
Sbjct: 309 RNYGVHPNLVIFNSLIKG-FLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGL 367
Query: 180 RERAARVLDEATKRGLFPEL 199
++ + D+ K G+ P++
Sbjct: 368 MDKCQEIFDDMVKAGIEPDI 387
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 96/233 (41%), Gaps = 36/233 (15%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ +M+ SG+ + ++N + A+ Q G A +EM+ R PNERT +++ YC
Sbjct: 234 VVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYC 293
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY---AKSNRWDDAYGLLDEMHT----- 121
G + ++ +++ G+ P+++ + L+ + ++ D+A L++E
Sbjct: 294 KEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVV 353
Query: 122 --NRISNIHQVTGQMIKGE--FDD----------------------ESNWQMVEYVFDKL 155
+ I N G M K + FDD + E + +
Sbjct: 354 TFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAM 413
Query: 156 NCEGYGLGMRFYNALLEALWC-LGLRERAARVLDEATKRGLFPELFRHNKLVW 207
G + + ++ WC G E A+RV ++ + G+ P L L+W
Sbjct: 414 GKSGVQPNVVIFTTIISG-WCSAGKMEYASRVYEKMCEMGICPNLKTFETLIW 465
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 59/129 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +CQ I M ++G+ + +F+ + + + + G E+A M K PN
Sbjct: 366 GLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIF 425
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S +C AG ++ + ++++ GI P++ + L+ Y ++ A LL M
Sbjct: 426 TTIISGWCSAGKMEYASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQKAEELLQIMEQ 485
Query: 122 NRISNIHQV 130
++ +
Sbjct: 486 KGVAPVKST 494
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E Q I + ++E G ++ ++ A + RF+ ++EK P+
Sbjct: 85 GKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFF 144
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++ + +G V E+ + F+++K G P+ + L+ Y + ++ LLD M
Sbjct: 145 NAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLM 202
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 13/233 (5%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ + +L +M E G+ N ++NA+I + + G E+A+ ME + PN RT
Sbjct: 374 FEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNE 433
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ YC + V ++ ++ +LP V+ Y L+ +S +D AY LL M+
Sbjct: 434 LIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRG 492
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEY---VFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ MI D + VE +FD L +G + Y AL++ G
Sbjct: 493 LVPDQWTYTSMI----DSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKV 548
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
+ A +L++ + P N L ++ +H + G ++ KM ++
Sbjct: 549 DEAHLMLEKMLSKNCLP-----NSLTFNALIHGLCADGKLKEATLLEEKMVKI 596
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 102/232 (43%), Gaps = 9/232 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +S++ E+G+ + ++ ++I + Q + A K + EM C NE
Sbjct: 232 GNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAY 291
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C A +DE+ + F ++K P+V Y +L+ S R +A L+ EM
Sbjct: 292 THLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEE 351
Query: 122 NRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I NIH T ++ + ++ + ++ +G + YNAL+ G+
Sbjct: 352 TGIKPNIHTYT--VLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMI 409
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
E A V++ R L P +N+L+ + + A+ V LNKM E
Sbjct: 410 EDAVDVVELMESRKLSPNTRTYNELIKGY-----CKSNVHKAMGV-LNKMLE 455
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 87/185 (47%), Gaps = 2/185 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +I++ R EA+ EME+ PN T ++ C ++++E ++
Sbjct: 325 TYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQM 384
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G++P+V+ Y L+ Y K +DA +++ M + ++S + ++IKG +SN
Sbjct: 385 LEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYC--KSN 442
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
V +K+ + YN+L++ G + A R+L RGL P+ + +
Sbjct: 443 VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTS 502
Query: 205 LVWSV 209
++ S+
Sbjct: 503 MIDSL 507
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 86/189 (45%), Gaps = 11/189 (5%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N ++ + + G +E + Y+EM + + PN T +++ YC G V+E+ + +I
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGEFD 140
+G+ P Y L+ Y + D A+ + +EM N ++ H + G + D
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
+ + +F K+ + +R Y L+++L + A ++ E + G+ P +
Sbjct: 306 EAMD------LFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIH 359
Query: 201 RHNKLVWSV 209
+ L+ S+
Sbjct: 360 TYTVLIDSL 368
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +L +M NS +FNA+I G+ +EA +M K+ P T
Sbjct: 545 AGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVST 604
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ G D + +FQ++ SSG P Y + Y + R DA ++ +M
Sbjct: 605 DTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMR 664
Query: 121 TNRISNIHQVTGQMIKGEFD 140
N +S +IKG D
Sbjct: 665 ENGVSPDLFTYSSLIKGYGD 684
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + + M E V N ++N ++ + + G EEA + ++ + DP+ T
Sbjct: 197 GLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTY 256
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC +D + + F E+ G + + Y L+ + R D+A L +M
Sbjct: 257 TSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKD 316
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + +IK E + + V ++ G + Y L+++L E
Sbjct: 317 DECFPTVRTYTVLIKSLCGSERKSEALNLV-KEMEETGIKPNIHTYTVLIDSLCSQCKFE 375
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A +L + ++GL P + +N L+
Sbjct: 376 KARELLGQMLEKGLMPNVITYNALI 400
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 31/212 (14%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M++ G+ + ++ ++I++ + R EEA + +E+ +PN A++ YC
Sbjct: 484 LLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYC 543
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA---------YGLLDEMH 120
AG VDE+ +++ S LP+ + + L+ + +A GL +
Sbjct: 544 KAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVS 603
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T+ I IH++ + G+FD + F ++ G Y ++ +C
Sbjct: 604 TDTIL-IHRL---LKDGDFDHAYSR------FQQMLSSGTKPDAHTYTTFIQT-YC---- 648
Query: 181 ERAARVLD------EATKRGLFPELFRHNKLV 206
R R+LD + + G+ P+LF ++ L+
Sbjct: 649 -REGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + ++++M E+GV+ + +++++I+ + G+ A M C+P++ T
Sbjct: 655 DAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHT----- 709
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
F L+ E + K G P L + +D LL++M + ++
Sbjct: 710 ----FLSLIKHLLE-MKYGKQKGSEPE-------LCAMSNMMEFDTVVELLEKMVEHSVT 757
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLN-CEGYGLGMRFYNALLEALWCLGLRERAA 184
+ ++I G + N ++ E VFD + EG +NALL L AA
Sbjct: 758 PNAKSYEKLILG-ICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAA 816
Query: 185 RVLDEATKRGLFPEL 199
+V+D+ G P+L
Sbjct: 817 KVVDDMICVGHLPQL 831
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 4/197 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M++ G NS + +I+A + R +EA+K EM + C P+ T V+ +C
Sbjct: 232 LLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFC 291
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
V E + + G P+ M Y L+ K+ R D+A LL ++ + + +
Sbjct: 292 RLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNT 351
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ ++ +E+ +V+DK+ GY + ++ L+ L GL A ++++
Sbjct: 352 LVNGFVRNGRLNEA----TAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVND 407
Query: 190 ATKRGLFPELFRHNKLV 206
+G P L + L+
Sbjct: 408 MDAKGCKPNLNTYTILI 424
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 1/213 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ M GV NS +FN +I AF + G +EA+K +M C +E T ++
Sbjct: 508 ALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKAL 567
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G V++ F+E+ G+ PS++ +L+ + + + +A + +M S
Sbjct: 568 CKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDI 627
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+I G Q +F+KL EG YN L+ L G + A +L
Sbjct: 628 VTYNSLING-LCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLY 686
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYT 221
+ G P N LV++ EG T
Sbjct: 687 RGVENGFVPNDVTWNILVYNFGKQSNSEGQTIT 719
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ +++ M G N +++ +I+ F + G+ EEA EM N
Sbjct: 396 GLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGY 455
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++S C G + E+ + F E+ S G P + + L+ + + +DA L +M
Sbjct: 456 NALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVL 515
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + VT + F Q + + + G L YN L++AL G E
Sbjct: 516 EGVI-ANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVE 574
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+ + +E ++GL P + N L+
Sbjct: 575 KGLGLFEEMIRKGLTPSIITCNILI 599
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 46/214 (21%)
Query: 2 GLYKEC-----QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIK-AYVEMEKVRCD 55
GL K C QA+LS++ V FN ++ F + GR EA Y +M
Sbjct: 324 GLCKTCRIDEAQALLSKVPGPNVVH----FNTLVNGFVRNGRLNEATAFVYDKMINNGYV 379
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
P+ T +++ C GL + E ++ + G P++ Y +L+ + K + ++A +
Sbjct: 380 PDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLI 439
Query: 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
L EM T +G+ L YNAL+ AL
Sbjct: 440 LREMLT------------------------------------KGFSLNTVGYNALISALC 463
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
G A + E + +G P++F N L++ +
Sbjct: 464 KHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGL 497
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N V++ G A + +M PN+ T V+ C VD + +++
Sbjct: 177 SYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDM 236
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G +P+ M Y L+ +K +R D+A LL+EM + G D +
Sbjct: 237 TKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEM--------------FLMGCPPDVNT 282
Query: 145 WQMVEYVFDKLN 156
+ V Y F +LN
Sbjct: 283 FNTVIYGFCRLN 294
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 6/194 (3%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M GV+ N +F V++A + A +M K C PN + ++
Sbjct: 201 MLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDR 260
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
VDE+ + +E+ G P V + ++ + + NR + L+D M + G
Sbjct: 261 VDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGY 320
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG-LRERAARVLDEATK 192
++ G + + K+ G + +N L+ G L E A V D+
Sbjct: 321 LMHG-LCKTCRIDEAQALLSKVP----GPNVVHFNTLVNGFVRNGRLNEATAFVYDKMIN 375
Query: 193 RGLFPELFRHNKLV 206
G P++F + LV
Sbjct: 376 NGYVPDVFTFSTLV 389
>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N +I + R E+A+ VEME C+PN T ++ C G V+E+ E+
Sbjct: 12 SYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLGEM 71
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
K G+ V+ Y L++ + D L DEM IS V +I G F +
Sbjct: 72 KRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLING-FCKKGL 130
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
W+ V + G + Y ++ L G +A + D T++G P +N
Sbjct: 131 WREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNV 190
Query: 205 LV 206
L+
Sbjct: 191 LI 192
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 1/200 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M S NS ++ +++ + GR EEA++ EM++ + + ++S +C
Sbjct: 32 LLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFC 91
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +D K F E+ GI P+V+ Y L+ + K W +A +L M I
Sbjct: 92 SKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVY 151
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
MI G D + ++ +FD + +G YN L+ L G A ++ +
Sbjct: 152 TYTCMIGGLCKDGRARKALD-LFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFET 210
Query: 190 ATKRGLFPELFRHNKLVWSV 209
++G E+ +N L+ +
Sbjct: 211 MLEKGKRLEVVSYNTLIMGL 230
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 99/214 (46%), Gaps = 17/214 (7%)
Query: 2 GLYKECQAILSRMSESG--VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
G E + S + E G V + +FN VI+ + GR ++A++ Y M + N
Sbjct: 234 GKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLF 293
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T ++ Y +G++D++ E ++ + G++PS Y +++ + K + + A GL M
Sbjct: 294 TCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRM 353
Query: 120 HTNRIS----NIHQVTGQMIKGEFDDESNWQMVEYVFDKL---NCEGYGLGMRFYNALLE 172
+ +S + + + + K ES+ + +F ++ NCE + +N +++
Sbjct: 354 KISGLSPTLFDYNTLMASLCK-----ESSLEQARRLFQEMKESNCEPDTIS---FNIMID 405
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G A +L++ + GL P+ + ++ +
Sbjct: 406 GTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFI 439
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 63/130 (48%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + SRM SG++ +N ++ + + E+A + + EM++ C+P+ + ++
Sbjct: 347 KGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDG 406
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
AG + +KE +++ G+ P Y + +K + ++A G D M + I+
Sbjct: 407 TLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPD 466
Query: 128 HQVTGQMIKG 137
+ V +IKG
Sbjct: 467 NHVYDSLIKG 476
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/249 (18%), Positives = 99/249 (39%), Gaps = 48/249 (19%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL++E A+L M+E G+ + ++ +I + GR +A+ + M + +P+ T
Sbjct: 129 GLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTY 188
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G + ++ + F+ + G V+ Y L+ + + D+A L +
Sbjct: 189 NVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLL- 247
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ N+ + + +N +++ L G +
Sbjct: 248 -------------------EDGNYVEPDVI--------------TFNTVIQGLCKEGRLD 274
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS------VD--------VHRMWEGGAYTAISVWL 227
+A + D +RG F LF + L+ +D VH++ + T SV +
Sbjct: 275 KAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMI 334
Query: 228 NKMYEMFMM 236
+ +M M+
Sbjct: 335 DGFCKMHML 343
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 55/115 (47%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ + + M ES ++ SFN +I+ + G A + +M+++ P+ T +
Sbjct: 379 EQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSF 438
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ G ++E+K F + +SGI P Y L+ + ++ ++ LL +M
Sbjct: 439 INRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQM 493
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 80/210 (38%), Gaps = 3/210 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L M G+ + ++ +I F G + + EM + PN
Sbjct: 59 GRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVY 118
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C GL E+ + GI P V Y ++ K R A L D M T
Sbjct: 119 SCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLM-T 177
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ VT ++ E +F+ + +G L + YN L+ L G +
Sbjct: 178 EKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLD 237
Query: 182 RAARVLDEATKRGLF--PELFRHNKLVWSV 209
A ++ + G + P++ N ++ +
Sbjct: 238 EAMKLFSSLLEDGNYVEPDVITFNTVIQGL 267
>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 907
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 6/231 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E ++ R++E GV+ N +NA+I++ +G F+EA + M K+ PN+ T
Sbjct: 346 GKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTY 405
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ ++C G +D + E+ G+ PSV Y L+ + K A L+ EM
Sbjct: 406 SILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMIN 465
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ VT + G + + ++ ++ +G + + LL L+ GL
Sbjct: 466 KKLEPT-VVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIR 524
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
A ++ E + + P N++ ++V + E G + +LN+M E
Sbjct: 525 DAVKLFTEMAEWNVKP-----NRVTYNVMIEGYCEEGNMSKAFEFLNEMIE 570
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 80/186 (43%), Gaps = 9/186 (4%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+ ++++E R+ G+ EEA+ + + PN A++ C DE++ F +
Sbjct: 334 AVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRM 393
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG--EFDDE 142
G+ P+ + Y +L+ ++ + + D A L EM + +I G +F D
Sbjct: 394 GKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDI 453
Query: 143 SNWQ--MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
S + M E + KL + Y +L+ G +A R+ E T +G+ P ++
Sbjct: 454 SAAESLMAEMINKKLEPT-----VVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIY 508
Query: 201 RHNKLV 206
L+
Sbjct: 509 TFTTLL 514
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 75/185 (40%), Gaps = 1/185 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+ G+ + +F ++ + G +A+K + EM + PN T ++ YC G
Sbjct: 498 MTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGN 557
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ ++ E E+ GI+P Y L+ + + +A +D +H ++++
Sbjct: 558 MSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGN-CELNEICYT 616
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ F E + V + G L + Y L++ R+ +L E R
Sbjct: 617 GLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDR 676
Query: 194 GLFPE 198
GL P+
Sbjct: 677 GLKPD 681
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 87/199 (43%), Gaps = 3/199 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L M + G+ + + ++I+A + G F+EA + M C PNE T AV++
Sbjct: 668 GLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGL 727
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS-NRWDDAYGLLDEMHTNRISNI 127
C AG V+E++ +++ +P+ + Y L + K A L + + ++N
Sbjct: 728 CKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLAN- 786
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
T M+ F + + + ++ +G Y ++ L ++A +
Sbjct: 787 -TATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELW 845
Query: 188 DEATKRGLFPELFRHNKLV 206
+ T++G+ P+ +N L+
Sbjct: 846 NSMTEKGIRPDRVAYNTLI 864
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 14/224 (6%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + + VI + + A + V+ME CD N ++ C
Sbjct: 218 MINVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQK 277
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
V E+ +++ + P V+ YC L+ K ++ ++DEM R S
Sbjct: 278 VWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSS 337
Query: 134 MIKG---EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDE 189
+++G E +V+ V + G + YNAL+++L C G + A + D
Sbjct: 338 LVEGLRKRGKVEEALNLVKRVAEF----GVSPNIFVYNALIDSL-CKGRNFDEAELLFDR 392
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
K GL P N + +S+ + G +L +M +M
Sbjct: 393 MGKIGLCP-----NDVTYSILIDMFCRRGKLDTALSFLGEMIDM 431
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 3/197 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +KE I M G N ++ AVI + G EA +M PN+ T
Sbjct: 696 GDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTY 755
Query: 62 EAVLSVYCFAGLVDESKE-QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
L + G+ D K + G+L + Y ML+ + + R ++A L+ M
Sbjct: 756 GCFLDILT-KGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMI 814
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +S +T + E ++ + +++ + +G YN L+ G
Sbjct: 815 GDGVSP-DCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEM 873
Query: 181 ERAARVLDEATKRGLFP 197
+A + +E ++GL P
Sbjct: 874 GKATELRNEMLRQGLKP 890
>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Glycine max]
Length = 1078
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 112/234 (47%), Gaps = 12/234 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD---PNE 58
G YK ++ M+ G+ + ++N I+ + R + K Y+ ++++R + PNE
Sbjct: 224 GRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSR---SAKGYLLLKRMRRNMVYPNE 280
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T ++S + G ++ + + F E+ +LP+ + Y L+A + + +A L+D
Sbjct: 281 ITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDV 340
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M ++ + G ++ G + + + + MV + +++ G + Y A+++ L G
Sbjct: 341 MVSHGLRPNEVTYGALLNGLYKN-AEFGMVSSILERMRMGGVRVSHISYTAMIDGLCKNG 399
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ E A ++LD+ K + P++ + +SV ++ + G + KMY+
Sbjct: 400 MLEEAVQLLDDMLKVSVNPDV-----VTFSVLINGFFRVGKINNAKEIMCKMYK 448
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 98/213 (46%), Gaps = 12/213 (5%)
Query: 2 GLYKECQ-----AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GLYK + +IL RM GV + S+ A+I+ + G EEA++ +M KV +P
Sbjct: 359 GLYKNAEFGMVSSILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNP 418
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD---DAY 113
+ T +++ + G ++ +KE ++ +G++P+ + Y L+ Y K +AY
Sbjct: 419 DVVTFSVLINGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNYCKMGYLKEALNAY 478
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
+++ H+ +++ T ++ F + EY + ++ G ++ ++
Sbjct: 479 AVMN--HSGHVAD--HFTCNVLVATFCRYGKLEEAEYFMNHMSRMGLDPNSVTFDCIING 534
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G +A V D+ G FP LF + L+
Sbjct: 535 YGNSGDALKAFSVFDKMNSFGHFPSLFTYGGLL 567
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 90/217 (41%), Gaps = 6/217 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ + +FN ++ A + G+F+ A +ME+ P T +L+ YC G
Sbjct: 166 MLAKGICPDVATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGR 225
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ + + S GI V Y + + + +R Y LL M N + +++T
Sbjct: 226 YKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYP-NEITYN 284
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ F E ++ VFD+++ YN L+ G A R++D
Sbjct: 285 TLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSH 344
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
GL P N++ + ++ +++ + +S L +M
Sbjct: 345 GLRP-----NEVTYGALLNGLYKNAEFGMVSSILERM 376
>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
Length = 624
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 89/211 (42%), Gaps = 28/211 (13%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ +L RM E G + +NA+I + + F +A K EM K C P T ++
Sbjct: 30 RQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 89
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C AG ++ + E++ G P++ Y +++ + + D+A +L+EM
Sbjct: 90 LCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMA------- 142
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF------------YNALLEALW 175
++G F D + ++ C+ +F Y ++ L
Sbjct: 143 -------VRGYFPDVVTYN--SFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLC 193
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A+R+LD+ T RG P++ ++ L+
Sbjct: 194 KSGDLDSASRMLDQMTNRGCTPDVVTYSSLI 224
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 4/206 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K+ +L M + G + N ++N ++E + + +EA K EM P+ T
Sbjct: 93 AGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVT 152
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ + C VDE+++ + + P V+ Y ++ KS D A +LD+M
Sbjct: 153 YNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDQM- 208
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
TNR VT + F + + D + G M YN+LL AL LG
Sbjct: 209 TNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHI 268
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+A +L E +RG P++ +N +
Sbjct: 269 GKAEDMLVEMERRGFTPDVVSYNACI 294
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 16/217 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + +L M + G N ++N+++ A + G +A VEME+ P+ +
Sbjct: 230 GGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVS 289
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A + C A V ++K F + G P+ Y ML+ K DDA L+++
Sbjct: 290 YNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAR 349
Query: 121 TN-RISNIHQVT----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
+I +I T G G FD+ + V D+ CE + FYN +L++
Sbjct: 350 EKYQIVDILLYTVLLDGLCKGGRFDEA--CALFSKVLDEKICEP---DVFFYNVMLDSHC 404
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
++A ++ + +R N + W++ VH
Sbjct: 405 KRRQIDKALQIHKQMLERNCC------NVVTWNILVH 435
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 26/212 (12%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M+ G + +++++I+ F +GG E A+ M K+ C PN ++L
Sbjct: 204 MLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALH 263
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNRIS 125
G + ++++ E++ G P V+ Y + K+ R A + D M T S
Sbjct: 264 RLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNAS 323
Query: 126 NIHQVTGQMI-KGEFDD--------ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ + ++ K E DD +Q+V+ + + +G G RF A AL+
Sbjct: 324 SYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEAC--ALF- 380
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
++VLDE P++F +N ++ S
Sbjct: 381 -------SKVLDEKICE---PDVFFYNVMLDS 402
>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74750-like [Glycine max]
Length = 873
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 111/249 (44%), Gaps = 35/249 (14%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G + +++ V+EA G EEA +VEM++ P+E ++ ++ AG
Sbjct: 543 MQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGN 602
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----------HTN 122
V+++ E +Q + ++G+LP+V LL+ + + +R DAY L+ M +T
Sbjct: 603 VEKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTL 662
Query: 123 RIS---------------NIHQVTGQ--------MIKGEFDDESNWQMVEYVFDKLNCEG 159
+S + VTG M D ++ V D ++ E
Sbjct: 663 LLSCCTEAQPAHDMGFFCELMAVTGHPAHAFLLSMPAAGPDGQNVRDHVSKFLDMMHTED 722
Query: 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH-NKLVWSVDVHRMWEGG 218
++++ L GL+E A V + A +R ++P+ + + W +++H M +G
Sbjct: 723 REGKRGLVDSVVNFLNKSGLKEEAGSVWEAAAQRNVYPDAVKEKSSRYWLINLHVMSDGT 782
Query: 219 AYTAISVWL 227
A TA+S L
Sbjct: 783 AVTALSRTL 791
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 88/190 (46%), Gaps = 3/190 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M + G N ++N +I + +EA+ + EM++V C+P+ T ++ ++
Sbjct: 399 LLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHA 458
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIH 128
AG +D + ++ ++ +G+ P Y +++ K+ A+ L EM + N+
Sbjct: 459 KAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNL- 517
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT ++ N++M ++ + G+ Y+ ++EAL G E A V
Sbjct: 518 -VTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFV 576
Query: 189 EATKRGLFPE 198
E ++ P+
Sbjct: 577 EMQQKNWVPD 586
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
+ G + ++ ++ + RF+ K +M K C PN T ++ Y A +
Sbjct: 370 QPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLK 429
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ F E++ G P + YC L+ ++AK+ D A + M
Sbjct: 430 EALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRM 473
>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 616
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 26/215 (12%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + +L M G A + ++EA +GG F A++A + C +
Sbjct: 122 GLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNC 181
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+S C G VDE E +++ S G P ++ Y +L + RWDD L+ EM
Sbjct: 182 NLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEM-- 239
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+H+ QM + G +R Y +++ + G E
Sbjct: 240 ---VRVHEALSQMPE---------------------HGCTPDLRMYATIIDGICKDGHHE 275
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A +L GL P + +N ++ + WE
Sbjct: 276 VANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWE 310
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 11/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
ILSRM G+ N +N V++ R+EEA EM + C ++ T ++ +C
Sbjct: 280 ILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFC 339
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
GLVD E +++ G +P V+ Y ++ + K D+A LL M N I
Sbjct: 340 QNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTI 399
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
S + G + + E W + + + +G +N L+ + GL E+A
Sbjct: 400 SYTIVLKG-LCRAE-----RWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAI 453
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+L + G P+L ++ ++
Sbjct: 454 ELLKQMLVNGCSPDLISYSTVI 475
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 91/205 (44%), Gaps = 6/205 (2%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++E + +L+ M + + +FN +++ F Q G + I+ +M + C P+ T
Sbjct: 309 WEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTT 368
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
V++ +C GLVDE+ + + + G P+ + Y ++L ++ RW DA L+ M
Sbjct: 369 VINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQG 428
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+I Q +E + ++ G + Y+ +++ L G E A
Sbjct: 429 CLPNPVTFNTLINFMCKKGLAEQAIE-LLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEA 487
Query: 184 ARVLDEATKRGLFPELFRHNKLVWS 208
+L+ +G+ P N +++S
Sbjct: 488 LELLNVMINKGITP-----NTIIYS 507
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 2/200 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q ++S M + G N +FN +I + G E+AI+ +M C P+ + V+
Sbjct: 418 QELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDG 477
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
AG +E+ E + + GI P+ + Y + + ++ R D + D + + +
Sbjct: 478 LGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSD 537
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ +I + +++ F + G Y L+ L GL A +L
Sbjct: 538 AALYNAVISSLCKRWETDRAIDF-FAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLL 596
Query: 188 DE-ATKRGLFPELFRHNKLV 206
E ++R + L RH +V
Sbjct: 597 SELCSRRAVRKHLVRHFGIV 616
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-------- 53
G E +L ++ G + S+NAV++ R+++ + VEM +V
Sbjct: 192 GCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPE 251
Query: 54 --CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111
C P+ R ++ C G + + + + S G+ P+V+CY +L + RW++
Sbjct: 252 HGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEE 311
Query: 112 AYGLLDEM 119
A LL EM
Sbjct: 312 AEDLLAEM 319
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 41/216 (18%), Positives = 86/216 (39%), Gaps = 11/216 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ L + G +S + N V+ A + G +E ++ ++ C+P+ +
Sbjct: 156 GGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVS 215
Query: 61 LEAVLSVYCFAGLVDESK----------EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110
AVL C A D+ + E ++ G P + Y ++ K +
Sbjct: 216 YNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHE 275
Query: 111 DAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
A +L M + + ++KG E W+ E + ++ E L +N L
Sbjct: 276 VANDILSRMPSYGLKPNVVCYNTVLKGLCSAE-RWEEAEDLLAEMFQEDCPLDDVTFNIL 334
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
++ GL +R +L++ + G P++ + ++
Sbjct: 335 VDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVI 370
>gi|410110149|gb|AFV61154.1| pentatricopeptide repeat-containing protein 123, partial
[Xeroaloysia ovatifolia]
Length = 431
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S+ ++ + + +F EA+ + EM +++C + T
Sbjct: 97 LFREARSLISEMRTAGVMPNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 156
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 157 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 216
Query: 123 RI 124
I
Sbjct: 217 NI 218
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 202 LFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 261
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT- 121
++S++ AG +D + FQ+++SSG+ + Y ++ Y K+ A LL E+ +
Sbjct: 262 TIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKAGLVAHAKRLLHELKSP 321
Query: 122 ---NRISNIHQVTG 132
R + IH + G
Sbjct: 322 DNIPRDTAIHILAG 335
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ N T
Sbjct: 166 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTY 225
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K+ + D A L ++ +
Sbjct: 226 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRS 285
Query: 122 NRISNIHQVTGQMI 135
+ + I QV Q +
Sbjct: 286 SGVE-IDQVLYQTM 298
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ ++ M G+ NS +++ +I + + G+ + A + ++ + ++ +
Sbjct: 238 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQT 297
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-YGLLDEMHTN 122
++ Y AGLV +K E+KS +P +L A + R ++A Y +
Sbjct: 298 MIVAYEKAGLVAHAKRLLHELKSPDNIPRDTAIHIL----AGAGRIEEATYVFRQAIDAG 353
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160
+ +I V +MI F + V VFDK+ GY
Sbjct: 354 EVRDI-TVFERMIH-LFSKYKKYANVVEVFDKMRGLGY 389
>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
Length = 1131
Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 17/223 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E A+L +M + + +FN ++ A +++EA++ Y +M PN T
Sbjct: 375 GQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPPNTTTY 434
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
A++S + G + + F+E+ G SV+ Y L++ K+ W A L +EM
Sbjct: 435 NALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEWKLALQLFEEMRG 494
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N IS +T +G + W+ VF+++ +G + Y AL++A
Sbjct: 495 EGCVPNVISYNSLITA-CAQG-----AQWEKAAEVFEQMQRQGCRPDVVSYTALIQAYER 548
Query: 177 LGLRERAARVLDEATK-RGLFPELFRHNKLVWSVDVHRMWEGG 218
G RA +E + R P+ +N + +DV +WE G
Sbjct: 549 GGQWRRALAAFEEMIRARPCAPDSIVYNTI---IDV--LWETG 586
Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 42/214 (19%), Positives = 95/214 (44%), Gaps = 1/214 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G YK + M +G N ++N +I+ + + G++EEA+ +M++ R P RT
Sbjct: 340 GQYKLALDVYRDMQAAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTF 399
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + E+ ++++ +S P+ Y L++ ++K + EM
Sbjct: 400 NTLMIACNTSNQWQEALRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEM-V 458
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +T + + W++ +F+++ EG + YN+L+ A E
Sbjct: 459 QKGCERSVITYSSLISACEKAGEWKLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWE 518
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
+AA V ++ ++G P++ + L+ + + W
Sbjct: 519 KAAEVFEQMQRQGCRPDVVSYTALIQAYERGGQW 552
Score = 63.5 bits (153), Expect = 8e-08, Method: Composition-based stats.
Identities = 47/215 (21%), Positives = 95/215 (44%), Gaps = 9/215 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ M + G+ RN +F+A++ + G+++ A+ Y +M+ C N T ++ VY
Sbjct: 312 ALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTLIDVY 371
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNRI 124
+G +E+ +++K I P + L+ SN+W +A + ++M H
Sbjct: 372 GKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPPNT 431
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + + KG + V VF ++ +G + Y++L+ A G + A
Sbjct: 432 TTYNALISAHSKG-----GDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEWKLAL 486
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
++ +E G P + +N L+ + WE A
Sbjct: 487 QLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAA 521
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 59/119 (49%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + A+ M + G R+ +++++I A + G ++ A++ + EM C PN +
Sbjct: 444 GGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEWKLALQLFEEMRGEGCVPNVIS 503
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++++ +++ E F++++ G P V+ Y L+ Y + +W A +EM
Sbjct: 504 YNSLITACAQGAQWEKAAEVFEQMQRQGCRPDVVSYTALIQAYERGGQWRRALAAFEEM 562
>gi|410110069|gb|AFV61114.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
lycioides]
Length = 429
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 96 LFREARSLISEMRTAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 155
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 156 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 215
Query: 123 RI 124
I
Sbjct: 216 NI 217
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ N T
Sbjct: 165 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTY 224
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 225 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 284
Query: 122 NRISNIHQVTGQ 133
+ + I QV Q
Sbjct: 285 SGVE-IDQVLYQ 295
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 201 LFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 260
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT- 121
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+ +
Sbjct: 261 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKSP 320
Query: 122 ---NRISNIHQVTG 132
R + IH + G
Sbjct: 321 DNIPRDTAIHILAG 334
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ ++ M G+ NS +++ +I + + G+ + A + ++ + ++ +
Sbjct: 237 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQT 296
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-YGLLDEMHTN 122
++ Y AGLV +K E+KS +P +L A + R ++A Y +
Sbjct: 297 MIVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHIL----AGAGRIEEATYVFRQAIDAG 352
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160
+ +I V +MI F + V VFDK+ GY
Sbjct: 353 EVKDI-TVFERMIH-LFSKYKKYANVVEVFDKMRGLGY 388
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 92/207 (44%), Gaps = 1/207 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L+ M E GV + +F +I + G+ ++A++ + M R P+ T ++
Sbjct: 384 DAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLI 443
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G +D++ + + ++ S I P+ + Y +L+ + + + +DA+G LDEM I
Sbjct: 444 DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGIL 503
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+IKG + N + K+ + YN L+ A +
Sbjct: 504 PNIMTYNSIIKG-YCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFK 562
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVH 212
+L+ K + P++ +N L+ VH
Sbjct: 563 LLNMMEKEKVQPDVVTYNMLINGFSVH 589
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 106/269 (39%), Gaps = 51/269 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM------------ 49
G++ + + M + GVA + SF +I F + G EEA+K Y EM
Sbjct: 240 GMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSF 299
Query: 50 --------------------EKVRC---DPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
++RC P+ V+ +C AGL+ ++ E+
Sbjct: 300 SCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVG 359
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN-----IHQVTGQMIKGEFDD 141
G LP V+ Y LL K R DA GLL+EM + + G I+G+ D
Sbjct: 360 CGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDK 419
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+FD + + + YN L++ + G ++A + D+ R +FP
Sbjct: 420 ALQ------LFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP---- 469
Query: 202 HNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
N + +S+ + E G +L++M
Sbjct: 470 -NHVTYSILIDSHCEKGQVEDAFGFLDEM 497
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 95/202 (47%), Gaps = 9/202 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ M G+ ++N+V++ + G +++A + + EM+ P+ R+ ++ +
Sbjct: 212 ALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGF 271
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G ++E+ + ++E++ GI P ++ + L+ ++A+ + D A L EM +
Sbjct: 272 CRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVP-D 330
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER----AA 184
V M+ G F V D++ G + YN LL L +ER A
Sbjct: 331 GVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC----KERRLLDAE 386
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+L+E +RG+ P+L L+
Sbjct: 387 GLLNEMRERGVPPDLCTFTTLI 408
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 1/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + A++S M + V + + N +++A + G E A+ M P T +
Sbjct: 172 FDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNS 231
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
VL C +G+ D++ E F+E+ G+ P V + +L+ + + ++A + EM
Sbjct: 232 VLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRG 291
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I V+ + G F ++ C G Y ++ GL A
Sbjct: 292 IKP-DLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDA 350
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
RV DE G P++ +N L+
Sbjct: 351 LRVRDEMVGCGCLPDVVTYNTLL 373
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 63/150 (42%), Gaps = 1/150 (0%)
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
N TL ++ YC A D+ E++ + P V+ + +++ ++ + A L+
Sbjct: 155 NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 214
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
D M + + ++KG W VF +++ G +R + L+
Sbjct: 215 DSMVSKGLKPGIVTYNSVLKG-LCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 273
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G E A ++ E RG+ P+L + L+
Sbjct: 274 VGEIEEALKIYKEMRHRGIKPDLVSFSCLI 303
>gi|410110083|gb|AFV61121.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
cujabensis]
Length = 359
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 54 LFREARSLISEMKTXGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 113
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 114 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 173
Query: 123 RI 124
I
Sbjct: 174 NI 175
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 182
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 183 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 242
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 243 SGVE-IDQILFQ 253
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 51/94 (54%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++ +IE R+ + +AI + +++ P+ A+++V+ A L E++ E+K
Sbjct: 7 YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMK 66
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 67 TXGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 100
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N++I + + E+A EM+ +PN T
Sbjct: 159 LFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 218
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 219 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 278
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 279 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 329
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 330 KYSNVVEVFDKMRGLGYFPD 349
>gi|302779912|ref|XP_002971731.1| hypothetical protein SELMODRAFT_95702 [Selaginella moellendorffii]
gi|300160863|gb|EFJ27480.1| hypothetical protein SELMODRAFT_95702 [Selaginella moellendorffii]
Length = 191
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERT 60
G +EC+ + +M E R+ ++ A++ ++ Q G EEA K + M EK +PN T
Sbjct: 20 GQLEECKRLFEKMPE----RDIVAWTALMSSYAQNGHIEEAKKFFNGMPEKKGLEPNSTT 75
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ VL+ C GL+DES+ QF +K I P YC ++ + S + DA L+D M
Sbjct: 76 MLGVLTACCHMGLLDESQSQFLSMKPDRSIEPGSEHYCCMITLLGTSGKIRDAEELVDTM 135
>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
Length = 600
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 8/189 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + RM + G+ ++ ++N++I + GR +EA + + EM + P+ T
Sbjct: 233 GMRYEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTY 292
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC AG ++E+ + E++++G+LP V Y +L + + + LL+EM
Sbjct: 293 TTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDE 352
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ H VT + + + V K+ G L Y AL+ +C
Sbjct: 353 RKVQADH-VTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHG-FC----- 405
Query: 182 RAARVLDEA 190
A+ LDEA
Sbjct: 406 -KAKELDEA 413
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 13/206 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE +L+ M E V + + N +I A+ + G A K +M + N+ T
Sbjct: 338 GKMKEVNQLLNEMDERKVQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTY 397
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+A++ +C A +DE+KE F ++ +G P+ + L+ + K N D + DE+
Sbjct: 398 KALIHGFCKAKELDEAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLLIPDELMK 457
Query: 122 NRISNIHQVTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ V +I KG D + VFD++ +G Y L
Sbjct: 458 RGLPPDKAVYRSLIRRLCRKGLVDQ------AQKVFDQMQSKGLVGDSLVYATLAYTYLT 511
Query: 177 LGLRERAARVLDEATKRGLF--PELF 200
G A+ LD K L+ P+++
Sbjct: 512 EGKPVAASNTLDGMAKNQLYITPQIY 537
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 92/208 (44%), Gaps = 1/208 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E + M +G+ ++NA++ + G+ +E + EM++ + + T
Sbjct: 302 AGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVT 361
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ YC G + + + +++ SG+ + Y L+ + K+ D+A +M
Sbjct: 362 CNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMV 421
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
S + V ++ G F ++N V + D+L G Y +L+ L GL
Sbjct: 422 DAGFSPNYSVFSWLVDG-FCKKNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLCRKGLV 480
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWS 208
++A +V D+ +GL + + L ++
Sbjct: 481 DQAQKVFDQMQSKGLVGDSLVYATLAYT 508
>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Vitis vinifera]
Length = 476
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 2/185 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q I + M + + +S +++ ++E + + +A + + EM + CDP+ T ++ +
Sbjct: 166 QEIFNGMKDQFIP-DSKTYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDI 224
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C AG VDE+ +E+ SS P+ Y +L+ Y NR +DA +M N I
Sbjct: 225 LCKAGRVDEAVGIVKEMDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEAD 284
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
V +I G F + + V ++++C+G R N +L +L G + A RV
Sbjct: 285 VAVYNALI-GAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVF 343
Query: 188 DEATK 192
K
Sbjct: 344 RRMIK 348
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 87/210 (41%), Gaps = 35/210 (16%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC-----------F 70
N ++F ++ + + + +EA+ + MEK PN ++LS C F
Sbjct: 110 NVETFCIIMRKYARSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQEIF 169
Query: 71 AGLVDE-----------------------SKEQFQEIKSSGILPSVMCYCMLLAVYAKSN 107
G+ D+ ++E F+E+ G P ++ Y +++ + K+
Sbjct: 170 NGMKDQFIPDSKTYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAG 229
Query: 108 RWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFY 167
R D+A G++ EM ++ + ++ + E+ + Y F + + Y
Sbjct: 230 RVDEAVGIVKEMDSSVCKPTSFIYSVLVHT-YGIENRIEDAVYTFLDMERNEIEADVAVY 288
Query: 168 NALLEALWCLGLRERAARVLDEATKRGLFP 197
NAL+ A + + A RVL+E +G+ P
Sbjct: 289 NALIGAFCKVNKLKNAYRVLNEMDCKGIRP 318
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/205 (18%), Positives = 82/205 (40%), Gaps = 2/205 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E I+ M S S ++ ++ + R E+A+ +++ME+ + +
Sbjct: 228 AGRVDEAVGIVKEMDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAV 287
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ +C + + E+ GI P+ ++L D+A+ + M
Sbjct: 288 YNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMI 347
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ + T M+ F + +M V+ + + + M ++ L+ L G
Sbjct: 348 --KVCDPDADTYTMMIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNA 405
Query: 181 ERAARVLDEATKRGLFPELFRHNKL 205
+A +L+E ++G+ P KL
Sbjct: 406 SKACILLEEMIEKGIRPSSVTFGKL 430
>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like, partial [Cucumis sativus]
Length = 594
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 3/201 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR--CDPNE 58
G Y + + M + + ++ + N VI + ++ +AI+ + M + R C P+
Sbjct: 53 GAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDV 112
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T +++ +Y G +++ K F + + GI P+++ Y L++ YA +A+ + DE
Sbjct: 113 VTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDE 172
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M + V+ + F VFD + + YNAL++A G
Sbjct: 173 MKRSGFCP-DVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNG 231
Query: 179 LRERAARVLDEATKRGLFPEL 199
+A +L E + G+ P +
Sbjct: 232 YLPQAVDILREMEQDGIHPNV 252
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 19/198 (9%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
+ + +FN +I A G + EA++ +M P+ T VLS Y ++
Sbjct: 1 IPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKAL 60
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR----------ISNIH 128
F+ +K + I P +++ K ++ A + M R S IH
Sbjct: 61 SYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIH 120
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ ++G+ +D + VF + EG + YNAL+ A G+ + A V D
Sbjct: 121 LYS---VRGQIED------CKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFD 171
Query: 189 EATKRGLFPELFRHNKLV 206
E + G P++ + L+
Sbjct: 172 EMKRSGFCPDVVSYTSLI 189
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE ++ M SG + S+ ++I F + + A + + M++ +C PN +
Sbjct: 161 GMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSY 220
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE--- 118
A++ Y G + ++ + +E++ GI P+V+ C LLA + + + +L
Sbjct: 221 NALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAEL 280
Query: 119 --MHTNRISNIHQVTGQMIKGEFDDESN 144
+H N I+ + M GE++ N
Sbjct: 281 RGIHLNTIACNSAIGSYMNIGEYEKAIN 308
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 35/151 (23%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++LS G+ N+ + N+ I ++ G +E+AI Y ME P+ T ++S
Sbjct: 273 SVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGC 332
Query: 69 C-----------FAGLVD------------------------ESKEQFQEIKSSGILPSV 93
C F ++D +++ F +K SG P +
Sbjct: 333 CRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDL 392
Query: 94 MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ Y ++ Y+ S W+ L EM N I
Sbjct: 393 VTYTAMINAYSASEMWEKVCALYQEMEANNI 423
>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
Length = 1365
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 90/199 (45%), Gaps = 1/199 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + +I M E G ++ ++N+V+ AF + GR EE + M RC +E T
Sbjct: 244 AGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEIT 303
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ +Y AG+ +++E + ++K G P + + +L+ K+ ++A + ++M
Sbjct: 304 YNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDML 363
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+++ Q MI + + E+ + + G + Y+ +L+ + G+
Sbjct: 364 KSQVRPTLQAFSAMICA-YAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMP 422
Query: 181 ERAARVLDEATKRGLFPEL 199
E+ + GL PEL
Sbjct: 423 EKCIILYKAMVGSGLKPEL 441
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/237 (17%), Positives = 105/237 (44%), Gaps = 26/237 (10%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + ++ + ++G+ + D +N +I + + G + A + M+++ C P+ T ++
Sbjct: 804 DAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLI 863
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL--------- 116
+Y +V E++ +E+ +G P++ Y L++ Y + ++DA +
Sbjct: 864 MLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCK 923
Query: 117 -DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
D N + N+++ G+ K +E + +++ +G+ + + L+++
Sbjct: 924 PDATAYNVMINVYRKAGEHRK-----------IEEIIEQMKVDGFEPSLTTIHMLMDSYG 972
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
G +A VL+ + G+ P+ + ++ S Y + +WL KM +
Sbjct: 973 KGGATGKAEEVLETLPEIGMSPDAIHYTSIINS-----HLNNKDYLSAVIWLRKMTD 1024
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 1/204 (0%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++ + + + + G A N+ +++A++ A+ + G FE A +A M PN
Sbjct: 661 LWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCAN 720
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
VL + AG E E FQ + GI P+ + ++ ++++ ++A + +M
Sbjct: 721 YVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEA 780
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
S QV ++ + E+ E + + G L + YN ++ LG
Sbjct: 781 GFSPSIQVFKALL-ALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRN 839
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
AA V + G P+ N L+
Sbjct: 840 AALVFKGMQEIGCSPDATTFNTLI 863
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 97/213 (45%), Gaps = 1/213 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L + +G+ ++ ++N +I A R +AI + EM++ CDP+ T A++SVY
Sbjct: 182 SLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVY 241
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG V+ + F+ ++ G P + Y +L +A+ R ++ + M R S+
Sbjct: 242 GRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSS-D 300
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++T + + + E ++ ++ EG + L++ L G AA + +
Sbjct: 301 EITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFE 360
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYT 221
+ K + P L + ++ + M+ +T
Sbjct: 361 DMLKSQVRPTLQAFSAMICAYAKADMFTDAEHT 393
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 91/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ L M +G+ N+ N V+EAF + G+ +E + + + ++ PN RT
Sbjct: 695 GNFERATRALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTF 754
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ + G ++E++ ++++K +G PS+ + LLA+Y++ DA L+ ++
Sbjct: 755 VVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKK 814
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + MI + +++ VF + G +N L+ + +
Sbjct: 815 AGLELDIDIYNHMI-SLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQ 873
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +L E K G P + + L+
Sbjct: 874 EAQALLREMIKTGNAPNISTYTTLI 898
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 110/304 (36%), Gaps = 65/304 (21%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ +E QA+L M ++G A N ++ +I A+ + +E+A + + + C P+
Sbjct: 871 MVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYN 930
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL------ 116
+++VY AG + +E +++K G PS+ ML+ Y K A +L
Sbjct: 931 VMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEI 990
Query: 117 ----DEMHTNRISNIHQVTGQMIKG-----EFDD----ESNWQMVEYVFDKLNCEGYGLG 163
D +H I N H + + D ++ + +V CE
Sbjct: 991 GMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACVRPTHVTITCFVGAASVCERSSHA 1050
Query: 164 MRFYNALLEALWCLGLR------------------------------------------- 180
+ AL EA + L LR
Sbjct: 1051 LMLLKALSEAGFSLPLRLMTECTPKVVQDMQDIFDQLQESGPEACQGVVNVLMDLLWAFR 1110
Query: 181 --ERAARVLDEATKRGLFPE-LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMG 237
AA V A + ++ + L R W D R+ G + A+ +WL++M + + G
Sbjct: 1111 QCATAALVFAVAIESNIYTQVLARVKDRNWGADFRRLSPGASLVALILWLDQMQDASLQG 1170
Query: 238 EDLP 241
+P
Sbjct: 1171 SPVP 1174
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 19/193 (9%)
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
PN R L +LSV A ++E F +SS I V Y L++VYA+ W+ L
Sbjct: 89 PNPRMLAVMLSVLGRANQPGLAQELFDRAESS-IGNCVQVYNSLMSVYARHGDWNSVQQL 147
Query: 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR----FYNALL 171
L M +R VT ++ + M E + L + Y G+R YN L+
Sbjct: 148 LCRMQ-DRGCRPDLVTFNIV---IKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLI 203
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV----------WSVDVHRMWEGGAYT 221
A A + +E ++G P+++ +N ++ + + R+ + +T
Sbjct: 204 SACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFT 263
Query: 222 AISVWLNKMYEMF 234
+V N + F
Sbjct: 264 PDAVTYNSVLHAF 276
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E A+ M +S V +F+A+I A+ + F +A Y M + P+
Sbjct: 349 AGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLA 408
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L V+ AG+ ++ ++ + SG+ P + Y +++ V+ + + + L EM
Sbjct: 409 YSVMLDVFFKAGMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSVAEIENLSKEM 467
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 73/199 (36%), Gaps = 40/199 (20%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + E + + G + SD ++ ++ + G +EA+ +++M T
Sbjct: 554 AGRFSEAEEEMRTSQTYGQVQVSDFLKVLVASYDRAGMQDEALARFLDM----------T 603
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
E + E+ + + +VMCYC K + L+D +H
Sbjct: 604 TEGL------------------EMDAEVLQTAVMCYCR------KGFAFVAHELLIDCLH 639
Query: 121 TNRI--SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ S +H I + WQ E VF L G+ Y+ALL A G
Sbjct: 640 AFDVKDSAMHVA----IIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETG 695
Query: 179 LRERAARVLDEATKRGLFP 197
ERA R LD GL P
Sbjct: 696 NFERATRALDNMVAAGLQP 714
>gi|255661186|gb|ACU25762.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 426
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S+ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVMPNTASYTTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT- 121
++S++ AG +D + FQ+++SSG+ + Y ++ Y K+ A LL E+ +
Sbjct: 259 TIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKAGLVAHAKRLLHELKSP 318
Query: 122 ---NRISNIHQVTG 132
R + IH + G
Sbjct: 319 DNIPRDTAIHILAG 332
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K+ + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + I QV Q +
Sbjct: 283 SGVE-IDQVLYQTM 295
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ ++ M G+ NS +++ +I + + G+ + A + ++ + ++ +
Sbjct: 235 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQT 294
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-YGLLDEMHTN 122
++ Y AGLV +K E+KS +P +L A + R ++A Y +
Sbjct: 295 MIVAYEKAGLVAHAKRLLHELKSPDNIPRDTAIHIL----AGAGRIEEATYVFRQAIDAG 350
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160
+ +I V +MI F + V VFDK+ GY
Sbjct: 351 EVRDI-TVFERMIH-LFSKYKKYANVVEVFDKMRGLGY 386
>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
Length = 802
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 106/230 (46%), Gaps = 10/230 (4%)
Query: 5 KECQA---ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
K CQ +L M G+ R ++F+ V+ ++ + G+ +A+K M++ +PN
Sbjct: 221 KLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLIC 280
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ V+ A ++++ + ++ GI+P+V+ Y ++ Y +R ++A LL++MH+
Sbjct: 281 NTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHS 340
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE-GYGLGMRFYNALLEALWCLGLR 180
+V+ I G E V + K+ E G YN L+ L
Sbjct: 341 KGCLP-DKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHA 399
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+ A L +A ++G FR +KL +S VH + + G + +N+M
Sbjct: 400 DEALWFLKDAQEKG-----FRIDKLGYSAIVHALCKEGRMSEAKDLINEM 444
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 10/194 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +L+ M +GV N N I+ F + R E+A++ M+ V PN T
Sbjct: 255 AGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVT 314
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ YC V+E+ E +++ S G LP + Y ++ K R + L+ +M
Sbjct: 315 YNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMA 374
Query: 121 TNRISNIHQVT-----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
QVT + K + DE+ W ++ D +G+ + Y+A++ AL
Sbjct: 375 KEHGLVPDQVTYNTLIHMLTKHDHADEALW----FLKDAQE-KGFRIDKLGYSAIVHALC 429
Query: 176 CLGLRERAARVLDE 189
G A +++E
Sbjct: 430 KEGRMSEAKDLINE 443
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 4/184 (2%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L E G + ++A++ A + GR EA EM+ C P+ T AV++ +C
Sbjct: 406 LKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMD---CPPDVVTYTAVVNGFCR 462
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G VD++K+ Q + + G P+ + Y LL ++ + +A +++ M + + +
Sbjct: 463 LGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMN-MSEEHWWSPNSI 521
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
T +I E V ++ +G+ G N LL++L G A + ++E
Sbjct: 522 TYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEEC 581
Query: 191 TKRG 194
+G
Sbjct: 582 LNKG 585
>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 597
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 6/225 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +L M + G+ N ++N++IE F G A + +V M C+P+ ++
Sbjct: 322 EAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLI 381
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ YC V+E+ + + + G P V Y LL + + DA L M I
Sbjct: 382 NGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIP 441
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ G + G + ++ +E +F+KL L + +N L++ L G E A
Sbjct: 442 GDLYIYGIFLNGLCKNGCLFEAME-LFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWE 500
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+ ++ + L P++ +N + +H GG ++ KM
Sbjct: 501 LFEKLPQEELQPDVVTYN-----IMIHEFCRGGQVVKANILFQKM 540
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 17/205 (8%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+++ + G + ++ +I+ R +A + M+K+ C PN T ++
Sbjct: 152 AVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGL 211
Query: 69 CFAGLVDESKEQFQEIKSSGIL------PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
C G + + + QE+ + L P V+ Y +++ K R D+A L +EM
Sbjct: 212 CRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQ 271
Query: 123 RIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ + T M W+ + +F+++ +G + +N L++ L G
Sbjct: 272 GMTPTVISYTSLM----------WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVI 321
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +L+ +RG+ P L +N L+
Sbjct: 322 EAKDLLEVMIQRGIVPNLLTYNSLI 346
>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
Length = 655
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K IL+RM G+ N +N +++ R+EE + EM C ++ T
Sbjct: 311 GHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTF 370
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C GLVD E +++ G +P V+ Y ++ + K D+A LL M T
Sbjct: 371 NILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM-T 429
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ ++ ++ W E + ++ +G L +N L+ L GL E
Sbjct: 430 ACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVE 489
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A +L + G P+L ++ ++
Sbjct: 490 QAIELLKQMLVNGCSPDLISYSTVI 514
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 1/196 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E +L M+ G N+ S+ V++ R+ +A +M + C N T
Sbjct: 416 GLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITF 475
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C GLV+++ E +++ +G P ++ Y ++ K+ + D+A LL+ M
Sbjct: 476 NTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVM-V 534
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N+ + + + I E V +FD + YNA++ +L G E
Sbjct: 535 NKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETE 594
Query: 182 RAARVLDEATKRGLFP 197
RA L G P
Sbjct: 595 RAIEFLAYMVSSGCVP 610
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 102/231 (44%), Gaps = 13/231 (5%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++E + +L+ M + + +FN +++ F Q G + I+ +M C P+ T
Sbjct: 348 WEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTT 407
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
V++ +C GL+DE+ + + + G P+ + Y ++L + RW DA L+ +M +
Sbjct: 408 VINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQM-IQQ 466
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
++ +T + + + + ++ G + Y+ +++ L G + A
Sbjct: 467 GCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEA 526
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234
+L+ +G+ P N +++S + G +NK+ +MF
Sbjct: 527 LELLNVMVNKGMSP-----NTIIYSSIASALSREG-------RINKVIQMF 565
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 86/208 (41%), Gaps = 1/208 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L M G A ++ ++EA +GG F A++ ++ C + VL+
Sbjct: 143 AVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAI 202
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G VD++ +++ S G P V+ Y +L + RW L++EM +
Sbjct: 203 CDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEM-VRMACPPN 261
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT + ++ V V ++ G +R Y +++ + G + A +L+
Sbjct: 262 IVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILN 321
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWE 216
GL P + +N L+ + WE
Sbjct: 322 RMPSYGLKPNVVCYNTLLKGLCSAERWE 349
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 1/208 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q ++ M N +FN +I + G FE + +M + C P+ R ++
Sbjct: 247 QELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDG 306
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G + + E + S G+ P+V+CY LL + RW++ LL EM ++ +
Sbjct: 307 ICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMF-DKDCPL 365
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
VT ++ F V + +++ G + Y ++ GL + A +L
Sbjct: 366 DDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLL 425
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMW 215
T G P + ++ + W
Sbjct: 426 KSMTACGCKPNTISYTIVLKGLCSAERW 453
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/174 (18%), Positives = 77/174 (44%), Gaps = 1/174 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ +L + G A + + N V+ A G ++A+ ++ C+P+ +
Sbjct: 170 GGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVS 229
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AVL C A +E +E+ P+++ + L++ ++ ++ + +L +M
Sbjct: 230 YNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMA 289
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ + ++ +I G E + ++ + +++ G + YN LL+ L
Sbjct: 290 EHGCTPDIRMYATIIDG-ICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGL 342
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+ ++ + ++ +NAVI + + G E AI+ M C PNE T ++ G
Sbjct: 568 IQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGF 627
Query: 74 VDESKEQFQEIKSSGIL 90
V E++E E+ S G L
Sbjct: 628 VKEAQEMLTELCSKGAL 644
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 61/107 (57%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G + ++N +I ++ + GR + A+K + E+E C P+ + ++++ G
Sbjct: 455 KMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNG 514
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
VDE+ +F+E++ G+ P V+ Y L+ + K+++ + A L DEM
Sbjct: 515 DVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEM 561
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 7/201 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD---PN 57
G E +L+R E + ++ +N V A GR ++ + EK++ D P+
Sbjct: 408 SGKIAEAIDLLNRFHEKCITTDTIMYNTVFTAL---GRLKQVSHIHDLYEKMKQDGPPPD 464
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
T ++S Y AG VD + + F+E+++S P V+ Y L+ K+ D+A+
Sbjct: 465 IFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFK 524
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM + N VT + F +M +FD++ EG + YN LL+ L
Sbjct: 525 EMQEKGL-NPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERS 583
Query: 178 GLRERAARVLDEATKRGLFPE 198
G A + + ++GL P+
Sbjct: 584 GRTAEAVDLYAKLKQQGLTPD 604
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G + + +FN +++A + + ++A K + +M++ C+P+ T ++ + AG
Sbjct: 214 MLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGK 273
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
DES FQ + G +++ Y ++ AK D A L +M N
Sbjct: 274 TDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVEN 322
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 39/241 (16%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E A+ M E G N ++N +IEA +G ++A+ + +M + C PNE T
Sbjct: 271 AGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFT 330
Query: 61 LEAVLSVYCFAG-------LVDESKE------------QFQEIKSSGILPSVMC------ 95
+L+V G +V+ SK+ ++ S + C
Sbjct: 331 YSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVH 390
Query: 96 -------YCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMV 148
Y +L S + +A LL+ H I+ M F + V
Sbjct: 391 DKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCIT----TDTIMYNTVFTALGRLKQV 446
Query: 149 EYVFD---KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
++ D K+ +G + YN L+ + G + A ++ +E P++ +N L
Sbjct: 447 SHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSL 506
Query: 206 V 206
+
Sbjct: 507 I 507
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E M E G+ + +++ +IE F + + E A + EM C PN T
Sbjct: 513 NGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVT 572
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99
+L +G E+ + + ++K G+ P + Y +L
Sbjct: 573 YNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 611
>gi|255562047|ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538836|gb|EEF40436.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 451
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 19/206 (9%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +KE Q L MS+ G + +IE G FE A + +M K P+ T
Sbjct: 222 NGKFKEAQLFLEEMSKKGFNPPVRGRDLLIEGLLNAGYFESAKEMVFKMSKEGFVPDVNT 281
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C +G VD + + ++ G P + Y +L+ +K + D+A+ LL+
Sbjct: 282 FNCLIEAICNSGEVDFCVDMYYSLRKLGFCPDINSYKILIPAVSKVGKIDEAFKLLN--- 338
Query: 121 TNRISNIHQ---------VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
N I + H+ + G +G+FDD + F ++ +G+ Y L+
Sbjct: 339 -NSIEDGHKPFPGLYAPIIKGMCRRGQFDDAFCF------FGEMKVKGHPPNRPVYTMLI 391
Query: 172 EALWCLGLRERAARVLDEATKRGLFP 197
G AA L E T+ GL P
Sbjct: 392 TMCGRGGKYVEAANYLVEMTEMGLTP 417
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/189 (19%), Positives = 85/189 (44%), Gaps = 1/189 (0%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
+S++ ++IE + + G ++A++ + + + C+ N ++L C L +
Sbjct: 138 SSETVRSIIEEYGRSGLIDQAVEVFNQCNSLNCEQNVDIYNSLLFALCEVKLFHGAYALV 197
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+ + G+ P+ Y +L+ + + ++ +A L+EM + + +I+G +
Sbjct: 198 RRLIRKGLAPNKTTYSVLVNGWCSNGKFKEAQLFLEEMSKKGFNPPVRGRDLLIEGLLNA 257
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
E VF K++ EG+ + +N L+EA+ G + + K G P++
Sbjct: 258 GYFESAKEMVF-KMSKEGFVPDVNTFNCLIEAICNSGEVDFCVDMYYSLRKLGFCPDINS 316
Query: 202 HNKLVWSVD 210
+ L+ +V
Sbjct: 317 YKILIPAVS 325
>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 451
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 6/179 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + G+ N ++N +++ F + G+ +A + ++EM+K C+ + T V+ +
Sbjct: 215 VLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFG 274
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
AG + ++ F E+ G+LPSV Y + V K + ++A + +EM N
Sbjct: 275 VAGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVT 334
Query: 125 SNIHQVTGQMIKGEFD-DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ + G G+F E Q +E + N + Y + +R+Y+ E LGL E+
Sbjct: 335 TYNVLIRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEK 393
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 2/193 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G ++ SFN +++ + R E+A + + + + R + T +++ +C
Sbjct: 150 MHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL-RGRFSADTVTYNVIVNGWCLIKR 208
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ E +E+ GI P++ Y +L + ++ + A+ EM R I VT
Sbjct: 209 TPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEM-KKRNCEIDVVTYT 267
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ F + VFD++ EG + YNA ++ L E A + +E ++
Sbjct: 268 TVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRK 327
Query: 194 GLFPELFRHNKLV 206
G P + +N L+
Sbjct: 328 GYEPNVTTYNVLI 340
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 87/200 (43%), Gaps = 6/200 (3%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+++ RM + + +F V E + G+ ++A+K ++ M + C + + +L V
Sbjct: 110 SLIHRMRSLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILDVL 169
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C + V+++ E F+ ++ +V Y +++ + R A +L EM I+
Sbjct: 170 CKSKRVEKAYELFRALRGRFSADTV-TYNVIVNGWCLIKRTPKALEVLKEMVDRGINPNL 228
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFD--KLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
M++G F Q E+ + K NCE + + Y ++ G +R V
Sbjct: 229 TTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCE---IDVVTYTTVVHGFGVAGEIKRTRNV 285
Query: 187 LDEATKRGLFPELFRHNKLV 206
DE + G+ P + +N +
Sbjct: 286 FDEMIREGVLPSVATYNAFI 305
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K + + M GV + ++NA I+ + E A+ + EM + +PN T
Sbjct: 276 AGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTT 335
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ AG +E Q +++ G P+ Y M++ Y++ + + A GL ++M
Sbjct: 336 YNVLIRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMG 395
Query: 121 T 121
T
Sbjct: 396 T 396
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G N ++N +I G+F + ME C+PN +T ++ Y
Sbjct: 324 MVRKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSE 383
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111
V+++ F+++ + LP++ Y +L++ R +D
Sbjct: 384 VEKALGLFEKMGTGDCLPNLDTYNILISGMFVRKRSED 421
>gi|410110075|gb|AFV61117.1| pentatricopeptide repeat-containing protein 123, partial
[Burroughsia fastigiata]
Length = 348
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 37 LFREARSLISEMKTAGVTPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 96
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y L+ VY + + +A L M
Sbjct: 97 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRK 156
Query: 123 RI 124
I
Sbjct: 157 NI 158
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 60/121 (49%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 106 GMAKEADKLFWGMRKMGIEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 165
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 166 NSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 225
Query: 122 N 122
+
Sbjct: 226 S 226
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 83/200 (41%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N++I + + E+A EM+ +PN T
Sbjct: 142 LFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 201
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG + + ++ Y ++ A LL E+
Sbjct: 202 TIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 261
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 262 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 312
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 313 KYSNVVEVFDKMRGLGYFPD 332
>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 924
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
AI + + G+ + +N +I AF G + AI EM+K R P RT ++ +
Sbjct: 537 AIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGF 596
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG + + + F ++ SG +P+V + L+ + + + A +LDEM +S
Sbjct: 597 ARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNE 656
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G + EY F KL EG L + Y ALL+A G + A V
Sbjct: 657 HTYTTIMHGYAALGDTGKAFEY-FTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTK 715
Query: 189 EATKRGLFPELFRHNKLV 206
E + + + F +N L+
Sbjct: 716 EMSAQNIPRNTFVYNILI 733
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K + M SG +FNA+I + + E+AI+ EM PNE T
Sbjct: 599 AGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHT 658
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y G ++ E F +++ G+ V Y LL KS R A + EM
Sbjct: 659 YTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMS 718
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I V +I G W+ + + ++ G + Y + + A G
Sbjct: 719 AQNIPRNTFVYNILIDGWARRGDVWEAAD-LMQQMKQGGVKPDIHTYTSFINACCKAGDM 777
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
RA+++++E G+ P + + L+
Sbjct: 778 LRASKMMEEMETSGVKPNVKTYTTLI 803
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RN+ +N +I+ + + G EA +M++ P+ T
Sbjct: 705 GRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTY 764
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ ++ C AG + + + +E+++SG+ P+V Y L+ +A+++ + A EM
Sbjct: 765 TSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEM 822
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M + GV + ++ + I A + G A K EME PN +T ++
Sbjct: 744 EAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLI 803
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ A L +++ FQE+K +G+ P Y C++ A+ +++
Sbjct: 804 HGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTALLSRAT 846
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 1/176 (0%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N+ + +I A+ Q ++A EME D ++ Y G ++ F
Sbjct: 410 NAIIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVF 469
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+ +K G PSV+ Y L+ +YAK + A + M + I + + +I G F
Sbjct: 470 ERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLING-FLK 528
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+W +F+ + +G + YN ++ A +G +RA ++ E K P
Sbjct: 529 LKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRP 584
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/211 (16%), Positives = 91/211 (43%), Gaps = 1/211 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ +A++ M G+ D ++ +++ + G E+ + + +++ P+ + ++
Sbjct: 429 QAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLI 488
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
++Y G + ++ E + ++S+GI ++ Y ML+ + K W +A+ + +++ + +
Sbjct: 489 NLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLK 548
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +I+ F + ++ E + R + ++ G +RA
Sbjct: 549 PDVVLYNNIIRA-FCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALD 607
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
V D + G P + N L+ + R E
Sbjct: 608 VFDMMRRSGCIPTVHTFNALILGLVEKRQME 638
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 9/209 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G++ + +A+L MS G+ NS +N +I A + GR +EA+ EM C+P+ +
Sbjct: 395 GMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSY 454
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C ++E++ F+ + G++ + + Y ++ + RW DA L EM
Sbjct: 455 NTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMIL 514
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ S +IK D N + +++ +G YN L+ L +E
Sbjct: 515 HGCSLDVVSYNGLIKAMCKD-GNVDRSLVLLEEMAEKGIKPNNVSYNILISEL----CKE 569
Query: 182 RAARVLDEATK----RGLFPELFRHNKLV 206
R R E +K +GL P++ +N L+
Sbjct: 570 RRVRDALELSKQMLNQGLAPDIVTYNTLI 598
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 5/215 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L M+ G ++ + VI A G EA EM + C + T
Sbjct: 189 GRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTF 248
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ V+ C G V E+ + + G +P VM Y LL + + D+A +L
Sbjct: 249 DDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAML----- 303
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R+ ++ V + G E +++ + +G Y+ L+ L LG
Sbjct: 304 GRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIG 363
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A R+L E K+G P + + ++ S + MW+
Sbjct: 364 SAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 398
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 93/235 (39%), Gaps = 38/235 (16%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +A+L R+ E V FN VI G+ EA + Y M C P+ T ++
Sbjct: 298 EARAMLGRVPELNVVL----FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILM 353
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G + + +E++ G P+V+ Y ++L + K+ WDD LL+EM ++
Sbjct: 354 HGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLT 413
Query: 126 NIHQVTGQMI-----KGEFDDE---------------------------SNWQM--VEYV 151
Q MI G D+ +N QM E++
Sbjct: 414 LNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHM 473
Query: 152 FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
F+ L EG YN ++ AL G + A R+ E G ++ +N L+
Sbjct: 474 FENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLI 528
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M+E G+ N+ S+N +I + R +A++ +M P+ T +++ C
Sbjct: 543 LLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLC 602
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
G + + +++ + + P ++ Y +L++ + K DDA LL+
Sbjct: 603 KMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNR 651
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + M G + + S+N +I+A + G + ++ EM + PN +
Sbjct: 500 GRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSY 559
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S C V ++ E +++ + G+ P ++ Y L+ K A LL+++H
Sbjct: 560 NILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHN 619
Query: 122 NRISNIHQ 129
N+H
Sbjct: 620 E---NVHP 624
>gi|302809819|ref|XP_002986602.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
gi|300145785|gb|EFJ12459.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
Length = 445
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 103/247 (41%), Gaps = 42/247 (17%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL E ++ M +G A + +FN V+E + GR +EA K M +PN T
Sbjct: 131 AGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILT 190
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
L +L +C A +E+ + G P+++ + LL ++ +++ D A LL+ M
Sbjct: 191 LNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLETMA 250
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVE------------YVFDKLNCEGYGLGM--- 164
H+ N VT ++ +F + +MVE Y + L C Y G+
Sbjct: 251 HSKCKPNF--VTYSIMVQKFAE--MGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKT 306
Query: 165 -------RF---------------YNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
RF YN+L+E LG + A RVL+E G P+ +
Sbjct: 307 GEMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTY 366
Query: 203 NKLVWSV 209
+ L+ +
Sbjct: 367 SVLIQGL 373
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 11/231 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E ++ L RM NS S+N +I+A GR +EA + M K PN T
Sbjct: 64 AGFVDEAKSHLHRMD---CKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVT 120
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+ + AGL+DE+ E ++S+G + + + ++ KS R D+A +++ M
Sbjct: 121 YNAMATGLGKAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETML 180
Query: 121 TNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
I NI +T +I F + + + D + G+ + +NALLE
Sbjct: 181 LRNIEPNI--LTLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQ 238
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+ AA++L+ P N + +S+ V + E G +L ++
Sbjct: 239 MDSAAKLLETMAHSKCKP-----NFVTYSIMVQKFAEMGRMVEARAFLEQL 284
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +A L ++ G A N NA + + G + A + M + C N T
Sbjct: 272 GRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATY 331
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
+++ +C G +DE++ +E+ + G LP Y +L+ + + + A+
Sbjct: 332 NSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIEHAF 383
>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 624
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M + G+ FN ++ A+ + + +EA+ + M + +P+
Sbjct: 361 GALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNY 420
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
VL + C AG VD++ QF +KS G+ P+++ + L+ ++WD L EM
Sbjct: 421 GTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEM-I 479
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL-GLR 180
+R + + I G + + +FD + G YN L++ +CL G
Sbjct: 480 DRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDG-YCLDGKM 538
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A ++L G+ P +N ++
Sbjct: 539 DEAMKLLGVMVFNGVKPSDVTYNTII 564
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 84/207 (40%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +RM ++GV + + +++ + G+ +EAI + +M + +P+ T A++ C
Sbjct: 264 VFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLC 323
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G P Y LL YA + + LLD M + H
Sbjct: 324 KNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHH 383
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ MI G + + VF + +G + Y +L+ L G + A +
Sbjct: 384 IF-NMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNS 442
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
GL P + L+ + W+
Sbjct: 443 LKSEGLAPNIVVFTTLIHGLCTCDKWD 469
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G+ ++ FNA++ + GR EA + M ++ +PN T ++ YC G
Sbjct: 478 MIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGK 537
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+DE+ + + +G+ PS + Y ++ Y+++ R +D LL EM
Sbjct: 538 MDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREM 583
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/210 (18%), Positives = 90/210 (42%), Gaps = 6/210 (2%)
Query: 2 GLYKECQ-----AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GL +E Q ++ M + G + + +++++I A + ++A + + M K P
Sbjct: 216 GLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMP 275
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+ +++ YC +G E+ F+++ G+ P V+ Y L+ K+ + +A +
Sbjct: 276 DCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIF 335
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
D + G ++ G + E + + D + +G LG +N ++ A
Sbjct: 336 DSLVKRGHKPDSTTYGTLLHG-YATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAK 394
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ A V ++GL P++ + ++
Sbjct: 395 HNKVDEALLVFSNMRQQGLNPDIVNYGTVL 424
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 11/178 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE I +M GV + ++ A+++ + G+ EA K + + K P+ T
Sbjct: 291 GKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTY 350
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + + G+ + M++ YAK N+ D+A + M
Sbjct: 351 GTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQ 410
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
++ G ++ G DD + F+ L EG + + L+ L
Sbjct: 411 QGLNPDIVNYGTVLDILCTAGRVDDALSQ------FNSLKSEGLAPNIVVFTTLIHGL 462
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 79/199 (39%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNERTLEAVLSV 67
+L RM E G + S+ +++ ++A+ M K RC + V++
Sbjct: 157 VLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVING 216
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
G +D++ F + G P V+ Y +++ +K+ D A + M N +
Sbjct: 217 LLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPD 276
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ ++ G + + +F K+ G + Y AL++ L G A ++
Sbjct: 277 CIMYTSLVHGYCSSGKPKEAIG-IFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIF 335
Query: 188 DEATKRGLFPELFRHNKLV 206
D KRG P+ + L+
Sbjct: 336 DSLVKRGHKPDSTTYGTLL 354
>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 874
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 24/221 (10%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM------------ 49
G E + +L +M+E G ++ + N +I A G+ ++AI+ M
Sbjct: 445 GRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLG 504
Query: 50 -----------EKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM 98
+C P+ T ++S C AG +D++K++F E+ S G+ P Y
Sbjct: 505 NSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDT 564
Query: 99 LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158
+ + + + A+ +L +M + Q +I G +++ + D++ +
Sbjct: 565 FIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLI-DEMREK 623
Query: 159 GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
G + YN +L L G A VLDE ++G+ P +
Sbjct: 624 GVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNI 664
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
LYK+ +L+R+S +FN +I G E+A + + +M C+PNE T
Sbjct: 134 LYKD--MVLARVSPEAY-----TFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFG 186
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ YC AGL + E ++++ GILP+ + Y L++ + K + DA L+D+M
Sbjct: 187 ILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKM 243
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 1/187 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ +E + ++ M + N +S+N + + G+ EA EM + +P+ +
Sbjct: 305 GMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSY 364
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ C G++ +++ + +GILP + Y LL Y + +A LL EM +
Sbjct: 365 NIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMIS 424
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N S + T ++ E E + K+N +GYG+ N ++ AL G +
Sbjct: 425 NNCSP-NTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLD 483
Query: 182 RAARVLD 188
+A +++
Sbjct: 484 KAIEIVN 490
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL + +L +M G+ N+ +N +I +F + G+ +A K +M + P+ T
Sbjct: 195 AGLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVET 254
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGIL----PSVMCYCMLLAVYAKSNRWDDAYGLL 116
+ +S C +G + E+ F++++ L P+V+ Y ++L + K ++A L+
Sbjct: 255 FNSRISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLV 314
Query: 117 DEMHTN 122
D M N
Sbjct: 315 DTMKRN 320
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM----EKVRCDPN 57
G + + ++ +M E G+ + ++FN+ I A G+ EA + + +M E PN
Sbjct: 231 GKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGLPHPN 290
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
T + +L +C G+++E+K +K + ++ Y + L ++ + +A+ +L
Sbjct: 291 VITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLK 350
Query: 118 EM 119
EM
Sbjct: 351 EM 352
>gi|255582957|ref|XP_002532249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528067|gb|EEF30143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 92/216 (42%), Gaps = 11/216 (5%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ I+A + G+ A+K Y M + +C P+ ++ CF V E+ E F+E+
Sbjct: 255 TYGTFIKALTKKGKLGTALKIYRAMWEKQCKPDVVICNCIIDALCFKNRVPEALEVFREM 314
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI--HQVTGQMIKGEFDDE 142
G LP+ Y L+ +++ R + Y LLDEM + S + H ++K E
Sbjct: 315 SQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEMLDKKGSCMPDHITFNYLLKALKKPE 374
Query: 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
+ V +++ G + YN +L ER +E K GL P+
Sbjct: 375 E----LPLVLERMERNGCMISTDTYNLILRLYADWDCEERVGDTWNEMEKLGLGPD---- 426
Query: 203 NKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238
+ +++ +H ++E G + +M M+ E
Sbjct: 427 -RRSYTIMIHWLYEKGRINDALHYFGEMTSKGMVSE 461
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 92/207 (44%), Gaps = 1/207 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L+ M E GV + +F +I + G+ ++A++ + M R P+ T ++
Sbjct: 323 DAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLI 382
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G +D++ + + ++ S I P+ + Y +L+ + + + +DA+G LDEM I
Sbjct: 383 DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGIL 442
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+IKG + N + K+ + YN L+ A +
Sbjct: 443 PNIMTYNSIIKG-YCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFK 501
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVH 212
+L+ K + P++ +N L+ VH
Sbjct: 502 LLNMMEKEKVQPDVVTYNMLINGFSVH 528
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 106/269 (39%), Gaps = 51/269 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM------------ 49
G++ + + M + GVA + SF +I F + G EEA+K Y EM
Sbjct: 179 GMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSF 238
Query: 50 --------------------EKVRC---DPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
++RC P+ V+ +C AGL+ ++ E+
Sbjct: 239 SCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVG 298
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN-----IHQVTGQMIKGEFDD 141
G LP V+ Y LL K R DA GLL+EM + + G I+G+ D
Sbjct: 299 CGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDK 358
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+FD + + + YN L++ + G ++A + D+ R +FP
Sbjct: 359 ALQ------LFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP---- 408
Query: 202 HNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
N + +S+ + E G +L++M
Sbjct: 409 -NHVTYSILIDSHCEKGQVEDAFGFLDEM 436
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 95/202 (47%), Gaps = 9/202 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ M G+ ++N+V++ + G +++A + + EM+ P+ R+ ++ +
Sbjct: 151 ALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGF 210
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G ++E+ + ++E++ GI P ++ + L+ ++A+ + D A L EM +
Sbjct: 211 CRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVP-D 269
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER----AA 184
V M+ G F V D++ G + YN LL L +ER A
Sbjct: 270 GVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC----KERRLLDAE 325
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+L+E +RG+ P+L L+
Sbjct: 326 GLLNEMRERGVPPDLCTFTTLI 347
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 1/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + A++S M + V + + N +++A + G E A+ M P T +
Sbjct: 111 FDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNS 170
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
VL C +G+ D++ E F+E+ G+ P V + +L+ + + ++A + EM
Sbjct: 171 VLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRG 230
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I V+ + G F ++ C G Y ++ GL A
Sbjct: 231 IKP-DLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDA 289
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
RV DE G P++ +N L+
Sbjct: 290 LRVRDEMVGCGCLPDVVTYNTLL 312
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 63/150 (42%), Gaps = 1/150 (0%)
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
N TL ++ YC A D+ E++ + P V+ + +++ ++ + A L+
Sbjct: 94 NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 153
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
D M + + ++KG W VF +++ G +R + L+
Sbjct: 154 DSMVSKGLKPGIVTYNSVLKG-LCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 212
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G E A ++ E RG+ P+L + L+
Sbjct: 213 VGEIEEALKIYKEMRHRGIKPDLVSFSCLI 242
>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
Length = 755
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RMSE G + ++N VI F + G+ E+A ++EM PN T V+ C
Sbjct: 148 LLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLC 207
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
A +VD +K FQ++ G+ P Y L+ Y + +W + +L+EM T+
Sbjct: 208 KAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTH 260
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + + + + G+ ++ FN ++ GR EA + M +V PN +
Sbjct: 420 GKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISY 479
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C G +DE+ + + S+G+ P+ Y +LL Y K+ R DDAY L EM
Sbjct: 480 NTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLM 539
Query: 122 NRISNIHQVTGQMIKGEFD----DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
++ + ++ G F E+N + + + C+ Y YN +L L
Sbjct: 540 KGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYT-----YNIILNGL 591
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + L M +GV+ N FN + A+ + EEA+ + +M + P+ +
Sbjct: 315 GALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSF 374
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C G VD++ QF ++ + G+ P++ + L+ +W+ A L E+
Sbjct: 375 GALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLD 434
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I + V + +E + + D + G + YN L+ G +
Sbjct: 435 QGIC-VDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRID 493
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
AA++LD GL P F + L+
Sbjct: 494 EAAKLLDVMVSNGLKPNEFTYTILL 518
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 93/240 (38%), Gaps = 36/240 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR-----------FEEAIKAYVEME 50
G +KE +L MS G+ + ++ +++ + GR F + IK V +
Sbjct: 245 GKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIY 304
Query: 51 KVR------------------------CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
+ PN R + Y +++E+ F +++
Sbjct: 305 AILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQ 364
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
G+ P V+ + L+ K R DDA ++M ++ V ++ G W+
Sbjct: 365 QGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYG-LCTVGKWE 423
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
E +F ++ +G + F+N L+ L G A R++D + G+ P + +N LV
Sbjct: 424 KAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLV 483
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 3/177 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M GV ++N ++ Q GRF EA + Y+ M R + T +L+
Sbjct: 532 SLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGL 591
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-NRISNI 127
C VDE+ + F+ + S + + +++ K R +DA L + + ++
Sbjct: 592 CKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDV 651
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
VT ++I +E + + +F + G NAL+ L G RA
Sbjct: 652 --VTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRAG 706
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 101/257 (39%), Gaps = 44/257 (17%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
++R S VA N+ +++ +I F + GR E A+ + K N + +L C
Sbjct: 78 MARECSSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCD 137
Query: 71 AGLVDESKE------------------------------------QFQEIKSSGILPSVM 94
A VDE+ + F E+ GI P+V+
Sbjct: 138 AKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVV 197
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
Y ++ K+ D A G+ +M + + +I G + W+ V + ++
Sbjct: 198 TYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHG-YLSTGKWKEVVQMLEE 256
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARV-LDEATKRGLFPELFRHNKLVWSVDVHR 213
++ G Y LL+ L C R R AR+ D ++G+ P++ ++++ +H
Sbjct: 257 MSTHGLEPDCITYALLLDYL-CKNGRCREARLFFDSMFRKGIKPDV-----AIYAILLHG 310
Query: 214 MWEGGAYTAISVWLNKM 230
GA + + +L+ M
Sbjct: 311 YATKGALSEMHSFLDLM 327
>gi|293333312|ref|NP_001168014.1| uncharacterized protein LOC100381738 [Zea mays]
gi|223945505|gb|ACN26836.1| unknown [Zea mays]
Length = 462
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 89/190 (46%), Gaps = 8/190 (4%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
VA ++ ++N V++ ++E+A + EM + C PNE T + +C GL+D +
Sbjct: 3 VAPDTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAV 62
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--HTNRISNIHQVTGQMIK 136
E +++ G P V+ Y L+ +++ R D+A LL+ M N + + G I
Sbjct: 63 ELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCRPNTVCYNAALKGLCIA 122
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
G W+ V + ++ + ++ L+ +L L E A VL++ K G
Sbjct: 123 GR------WEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYM 176
Query: 197 PELFRHNKLV 206
P++ +N ++
Sbjct: 177 PDVVSYNTII 186
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N+ +NA ++ GR+EE + EM + C PN+ T +++ C LV+ + E
Sbjct: 108 NTVCYNAALKGLCIAGRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVL 167
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--HTNRISNIHQVTGQMIKGEF 139
++++ G +P V+ Y +++ ++ R DDA LL M + IS + V + K +
Sbjct: 168 EQMQKYGYMPDVVSYNTIISCFSDQARADDALKLLKSMLCKPDTIS-FNAVLKCLCKAK- 225
Query: 140 DDESNW-QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
W VE V L + M F N L+++L G + A V + K P+
Sbjct: 226 ----RWYDAVELVAKMLKKDCRINEMTF-NILIDSLCQNGQVKDAIEVFELMPKYRCMPD 280
Query: 199 LFRHNKLV 206
+ ++ L+
Sbjct: 281 IVTYSSLI 288
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+NA ++ R+++A + +M C PNE T ++S C GLV+ + + ++++
Sbjct: 315 SYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAIDVYEQM 374
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
GI P + Y L+ Y++ R DDA L M
Sbjct: 375 PKYGITPDIFTYNALINGYSEQGRLDDALKFLSTM 409
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 39/197 (19%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++++M + N +FN +I++ Q G+ ++AI+ + M K RC P+ T ++++ +
Sbjct: 233 LVAKMLKKDCRINEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFS 292
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL + + + F+ + + Y L + RWDDA L+ +M
Sbjct: 293 EQGLDEMAFDLFRSMPCRA---DIFSYNATLKGLCMAARWDDAGELIADM---------- 339
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT + E +N L+ +L GL RA V ++
Sbjct: 340 VTEDCLPNEVT--------------------------FNILISSLCQKGLVNRAIDVYEQ 373
Query: 190 ATKRGLFPELFRHNKLV 206
K G+ P++F +N L+
Sbjct: 374 MPKYGITPDIFTYNALI 390
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 85/215 (39%), Gaps = 13/215 (6%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ + ++ M + N +F I AF Q G + A++ +M K C P+
Sbjct: 23 WEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVIIYST 82
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ + G VDE+ + + + P+ +CY L + RW++ L+ EM
Sbjct: 83 LVNGFSEHGRVDEA---LKLLNTMLCRPNTVCYNAALKGLCIAGRWEEVGELIAEMVRKD 139
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEY---VFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I + ++VEY V +++ GY + YN ++ C +
Sbjct: 140 CPPNDATFSTLINSLCQN----RLVEYAVEVLEQMQKYGYMPDVVSYNTIIS---CFSDQ 192
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
RA L P+ N ++ + + W
Sbjct: 193 ARADDALKLLKSMLCKPDTISFNAVLKCLCKAKRW 227
>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1071
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 88/201 (43%), Gaps = 1/201 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K + I+ +M ++G+A NS + +I + + G EA K YV M ++ D N
Sbjct: 427 GKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFIC 486
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S C G V ++ F + G +P+ + + ++ Y S A+ + DEM
Sbjct: 487 NVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIK 546
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
H G ++K ++ + + DKL+ + YN +L + G+
Sbjct: 547 AGHHPSHFTYGGLLKA-LCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLT 605
Query: 182 RAARVLDEATKRGLFPELFRH 202
A + DE +R + P+ + +
Sbjct: 606 DAVALFDEMVQRNVLPDSYTY 626
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 110/234 (47%), Gaps = 12/234 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---CDPNE 58
G YK ++ +M G+ ++ ++N +++ + R + K Y+ ++K+R PNE
Sbjct: 217 GRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNR---SAKGYLLLKKMRKRMISPNE 273
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T ++++ + G + + FQE+ +LP+ + Y L+ + ++ A +L+
Sbjct: 274 ITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEM 333
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M ++V+ + + +++ + + +++ G +G Y A+++ L G
Sbjct: 334 MEATG-PKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNG 392
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
L + ++LD+ K G+ P++ + +SV ++ G + + KMY+
Sbjct: 393 LLNESVKLLDKMLKDGVVPDV-----VTFSVLINGFCRVGKIKNVKEIICKMYK 441
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 88/222 (39%), Gaps = 18/222 (8%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
V + +FN +I G+ ++A +ME+ P+ T VL+ YC G +
Sbjct: 164 VCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAAL 223
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE 138
E ++ S GI Y ML+ K+NR Y LL +M IS +++T I
Sbjct: 224 ELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISP-NEITYNSIING 282
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL----------EALWCLGLRERAARVLD 188
F E +F +++ YNAL+ +AL L + E +
Sbjct: 283 FVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPN 342
Query: 189 EATKRGLFPELFRHNKLVWSVDV-HRMWEGG------AYTAI 223
E + L L RH K S + RM G AYTA+
Sbjct: 343 EVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAM 384
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 1/161 (0%)
Query: 46 YVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
+ EM R P+ T +++V C G + ++ ++++ SG +PSV+ Y +L Y K
Sbjct: 156 FKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCK 215
Query: 106 SNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR 165
R+ A L+D+M + I T M+ + + + K+
Sbjct: 216 KGRYKAALELIDQMGSKGIE-ADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEI 274
Query: 166 FYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
YN+++ G A R+ E + L P +N L+
Sbjct: 275 TYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALI 315
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 22/205 (10%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
LY+ ++IL +S+ GV S F A++ + C N +
Sbjct: 62 LYENAKSILKHLSQMGVGSKS-VFGALMNTYPL------------------CKSNPSVFD 102
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+V ++ E F+ + G PSV MLL K + + EM
Sbjct: 103 LLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLAR 162
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
R+ T ++ E + Y+ K+ GY + YN +L +C R +
Sbjct: 163 RVCP-DVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLN-WYCKKGRYK 220
Query: 183 AA-RVLDEATKRGLFPELFRHNKLV 206
AA ++D+ +G+ + +N LV
Sbjct: 221 AALELIDQMGSKGIEADACTYNMLV 245
>gi|255661208|gb|ACU25773.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 426
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 95/230 (41%), Gaps = 36/230 (15%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC-------- 54
L++E ++++S M E+GV ++ S++ ++ + + +F EA+ + EM +++C
Sbjct: 94 LFREARSLISEMREAGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 55 ---------------------------DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87
+PN + +L VY A L E+ F+ ++
Sbjct: 154 IMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
I +V+ Y ++ +Y K+ + A L+ EMH NR + +T I +
Sbjct: 214 DIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH-NRGIEPNAITYSTIISIWGKVGKLDR 272
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+F KL G + Y ++ A GL A R+L E + P
Sbjct: 273 AAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIP 322
>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
Length = 951
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 12/208 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ RM+ GVA + +N+++ F G + A++ M+ +PN T A++ Y
Sbjct: 208 AVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEY 267
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +DE+ ++ + SG+LP V+ L+ + ++ +AY L EM ++ H
Sbjct: 268 CKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNH 327
Query: 129 ----QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + K ES + E V G + + Y AL++ L G E A
Sbjct: 328 VTYCTLIDSLAKARRGSESLGLLGEMV-----SRGVVMDLVMYTALMDRLGKEGKIEEAK 382
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVH 212
VL A + P + L VD H
Sbjct: 383 DVLRHAQSDNITPNFVTYTVL---VDAH 407
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 11/197 (5%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E ++ ++ +N I G+F EA EM +P++ T +++ C G
Sbjct: 565 EKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTS 624
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT---NRISNIHQVTG 132
++ + +E+K + I P+++ Y L+ ++ A LL+EM + S HQ
Sbjct: 625 KALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVL 684
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGL--GMRFYNALLEALWCLGLRERAARVLDEA 190
Q G + ++ E + G GL + YN L+ L C G+ A VLDE
Sbjct: 685 QACSGSRRPDVILEIHELMM------GAGLHADITVYNTLVHVLCCHGMARNATVVLDEM 738
Query: 191 TKRGLFPELFRHNKLVW 207
RG+ P+ N L+
Sbjct: 739 LTRGIAPDTITFNALIL 755
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 103/229 (44%), Gaps = 6/229 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + +L + N ++ +++A + G + A + ++ME+ PN T
Sbjct: 376 GKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTF 435
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ G + ++ + +++K SGI P+V+ Y L+ + K + A + +M
Sbjct: 436 SSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLH 495
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + V ++ G N + E +F ++ G L Y L++ L+ G
Sbjct: 496 EGVEANNFVVDSLVNG-LRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMP 554
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
A +V E ++ L P+ +V++V ++ + G ++ +L +M
Sbjct: 555 AAFKVGQELMEKNLSPD-----AVVYNVFINCLCTLGKFSEAKSFLKEM 598
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
AI ++M G++ N +FN ++ GR EA +M+KV +PN T + +++ Y
Sbjct: 768 AIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGY 827
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ + E+ S G +P Y L++ +AK+ + A L EM
Sbjct: 828 AKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEM 878
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +LS M + G+ N+ +++ ++ + + EA++ Y EM P T
Sbjct: 796 GRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTY 855
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++S + AG+++++KE F E+K G+L + Y +LL ++K + LL +M
Sbjct: 856 NSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDM 913
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + +L M G+A ++ +FNA+I + + A Y +M PN T
Sbjct: 726 GMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATF 785
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L AG + E+ ++K G+ P+ + Y +L+ YAK + +A L EM
Sbjct: 786 NTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEM 843
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 84/201 (41%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L M GV + + A+++ + G+ EEA + PN T ++
Sbjct: 345 ESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLV 404
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+C AG +D +++ +++ ++P+V+ + ++ K A + +M + I+
Sbjct: 405 DAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIA 464
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G +I G F + ++ D L+ EG ++L+ L G E A
Sbjct: 465 PNVVTYGTLIDGFFKFQGQEAALDVYRDMLH-EGVEANNFVVDSLVNGLRKNGNIEGAEA 523
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ + +RGL + + L+
Sbjct: 524 LFKDMDERGLLLDHVNYTTLM 544
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 84/193 (43%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M SGV + + +A+++ + G+F EA + EM+K+ PN T ++ A
Sbjct: 283 MVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARR 342
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
ES E+ S G++ ++ Y L+ K + ++A +L ++ I+ + VT
Sbjct: 343 GSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITP-NFVTYT 401
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ N E V ++ + + +++++ L G +AA + +
Sbjct: 402 VLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDS 461
Query: 194 GLFPELFRHNKLV 206
G+ P + + L+
Sbjct: 462 GIAPNVVTYGTLI 474
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 99/241 (41%), Gaps = 38/241 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K IL M + G + ++N++I + G EEA++ +M PN T
Sbjct: 330 GHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTY 389
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSV---------MC----------------- 95
++S C V+E+ E + + S GILP V +C
Sbjct: 390 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKT 449
Query: 96 ---------YCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
Y ML+ R ++A LL EM ++ S +I G F +
Sbjct: 450 KGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDG-FCKNKRIE 508
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEATKRGLFPELFRHNKL 205
E +FD++ +G + YN L++ L C R E AA+++D+ GL P+ F +N L
Sbjct: 509 EAEEIFDEMELQGISRNVVTYNTLIDGL-CKNRRVEEAAQLMDQMLMEGLKPDKFTYNSL 567
Query: 206 V 206
+
Sbjct: 568 L 568
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 90/196 (45%), Gaps = 1/196 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
++ G+ + +FN++I+ A++ + EM+ C P+E T ++ C G
Sbjct: 412 LTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGR 471
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++E+ +E++SSG +V+ Y L+ + K+ R ++A + DEM IS
Sbjct: 472 LEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNT 531
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G + + + + D++ EG YN+LL G ++AA ++ T
Sbjct: 532 LIDGLCKNRRVEEAAQ-LMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSN 590
Query: 194 GLFPELFRHNKLVWSV 209
G P+ + L+ +
Sbjct: 591 GCEPDSVTYGTLILGL 606
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 1/197 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E ++L M SG +RN ++N +I+ F + R EEA + + EME N T
Sbjct: 470 GRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTY 529
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C V+E+ + ++ G+ P Y LL + ++ A ++ M +
Sbjct: 530 NTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTS 589
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N G +I G ++ + + +G L + YN +++AL+
Sbjct: 590 NGCEPDSVTYGTLILG-LSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTS 648
Query: 182 RAARVLDEATKRGLFPE 198
A R+ E ++G P+
Sbjct: 649 EAVRLFREMMEKGDPPD 665
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 1/209 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K + + SRM G+ + +FN +I+A + + AI EM P+E+T
Sbjct: 189 GNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKT 248
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ + G ++ + +++ ++G S + +L+ Y K R ++ +DEM
Sbjct: 249 FTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMS 308
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ G +E + D + EG+ + YN+L+ L LG
Sbjct: 309 NEGFRPDRFTFNSLVNGLCRIGHVKHALE-ILDVMLQEGFDPDIFTYNSLIFGLCKLGEV 367
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSV 209
E A +L++ R P +N L+ ++
Sbjct: 368 EEAVEILNQMILRDFSPNTVTYNTLISTL 396
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + MS G + +FN+++ + G + A++ M + DP+ T
Sbjct: 295 GRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTY 354
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G V+E+ E ++ P+ + Y L++ K N+ ++A L + +
Sbjct: 355 NSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTS 414
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I +I+G +N ++ +F+++ +G YN L+++L G E
Sbjct: 415 KGILPDVCTFNSLIQG-LCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLE 473
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +L E G + +N L+
Sbjct: 474 EALSLLKEMESSGCSRNVVTYNTLI 498
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 103/248 (41%), Gaps = 45/248 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +L M +G +F +IE++ + F+EA+ ME + L
Sbjct: 119 GSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIME----EEFGLKL 174
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSS-----GILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+A + LVD +K + EI +S GI P V + +L+ ++++ A ++
Sbjct: 175 DAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMM 234
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNW--------QMVE------------------- 149
+EM + +S + +++G F +E N QMV
Sbjct: 235 EEMGSYGLSPDEKTFTTLMQG-FIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCK 293
Query: 150 --------YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
D+++ EG+ +N+L+ L +G + A +LD + G P++F
Sbjct: 294 EGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFT 353
Query: 202 HNKLVWSV 209
+N L++ +
Sbjct: 354 YNSLIFGL 361
>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
Length = 650
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 91/201 (45%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +++RM +G N ++ ++ + G A+ +ME + P+ T ++
Sbjct: 213 EAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIII 272
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G +D++ F E+++ GI +V Y L+ + RWDD LL +M T +I+
Sbjct: 273 DNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKIT 332
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ VT + E + +++++ G YN+L+ L + A +
Sbjct: 333 P-NVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQ 391
Query: 186 VLDEATKRGLFPELFRHNKLV 206
++D +G P+++ +N L+
Sbjct: 392 MMDLMVSKGCDPDIWTYNILI 412
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 1/185 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+ N ++ R EA+ M C PN+ T +L+ C +G + + +++
Sbjct: 197 TLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKM 256
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ I P V+ Y +++ K R DDA EM T I + T + G F
Sbjct: 257 EHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIK-ANVFTYNSLIGSFCSFGR 315
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
W + + + ++AL+++L G A + +E RG+ P +N
Sbjct: 316 WDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNS 375
Query: 205 LVWSV 209
L++ +
Sbjct: 376 LIYGL 380
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 1/191 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +L M + N +F+A+I++ + G+ EA Y EM +PN T
Sbjct: 314 GRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITY 373
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C +DE+ + + S G P + Y +L+ + K+ + DD L +M
Sbjct: 374 NSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSL 433
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F + + VF ++ +G G+ Y LL+ L G E
Sbjct: 434 RGMIADTVTYSTLIQG-FCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELE 492
Query: 182 RAARVLDEATK 192
A +LD+ K
Sbjct: 493 EALGILDQMHK 503
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 97/245 (39%), Gaps = 46/245 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + + M G+ N+ ++N++I R +EA + M CDP+ T
Sbjct: 349 GKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTY 408
Query: 62 EAVLSVYCFAGLVDE-----------------------------------SKEQFQEIKS 86
+++ +C A VD+ +K+ FQE+ S
Sbjct: 409 NILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVS 468
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG-----EFDD 141
G+ P +M Y +LL + ++A G+LD+MH ++ + +I G + DD
Sbjct: 469 QGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDD 528
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
W + F L +G ++ YN +L L A + + + G P+
Sbjct: 529 A--WSL----FCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCT 582
Query: 202 HNKLV 206
+N L+
Sbjct: 583 YNTLI 587
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 1/199 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
+ ++ + G N+ +FN ++ GR EA++ M + P+ TL +++ C
Sbjct: 148 MGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCL 207
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
V E+ + + ++G P+ Y +L KS A LL +M +I H V
Sbjct: 208 KDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKP-HVV 266
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
T +I + F ++ +G + YN+L+ + G + A++L +
Sbjct: 267 TYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDM 326
Query: 191 TKRGLFPELFRHNKLVWSV 209
R + P + + L+ S+
Sbjct: 327 ITRKITPNVVTFSALIDSL 345
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 83/216 (38%), Gaps = 1/216 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y A+ +M G+A + + N +I F + + A A ++ K+ +PN T
Sbjct: 106 YDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNT 165
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L+ C G V E+ E + S +P ++ ++ +R +A L+ M N
Sbjct: 166 LLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANG 225
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+Q T I N + K+ + Y +++ L G + A
Sbjct: 226 CQP-NQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDA 284
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
E +G+ +F +N L+ S W+ GA
Sbjct: 285 LSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGA 320
>gi|449440377|ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Cucumis sativus]
gi|449483612|ref|XP_004156638.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Cucumis sativus]
Length = 736
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 3/191 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE- 83
S+ V+ A + G + A + EM ++ C N T +L YC +D++K+ F+E
Sbjct: 414 SYTTVVSALVKAGSMDRARQVLAEMTRIGCPANRITYNILLKGYCRLLQMDKAKDLFKEM 473
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143
+ +GI P V+ Y +++ + A G +EM + I+ +V+ + F
Sbjct: 474 VDGAGIEPDVVSYNIMIDGSILVDDSAGALGFFNEMRSKGIAPT-KVSYTTLMKAFAQSG 532
Query: 144 NWQMVEYVFDK-LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
++ VFD+ LN + + +N L+E LG E A +++ + + G FP++ +
Sbjct: 533 QPKLARKVFDEMLNDPRVKVDIVAWNMLIEGYCRLGWIEEAKQLVQKMKENGFFPDVSTY 592
Query: 203 NKLVWSVDVHR 213
L + + R
Sbjct: 593 GSLANGISLAR 603
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLEAVLSVYCFAG 72
M G+A S+ +++AF Q G+ + A K + EM R + ++ YC G
Sbjct: 509 MRSKGIAPTKVSYTTLMKAFAQSGQPKLARKVFDEMLNDPRVKVDIVAWNMLIEGYCRLG 568
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCML 99
++E+K+ Q++K +G P V Y L
Sbjct: 569 WIEEAKQLVQKMKENGFFPDVSTYGSL 595
>gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 466
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 5/199 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ ++ G+ +N++S N +++ + + E A + ++++ K PN T + +C
Sbjct: 141 VFDKLGTFGLEKNTESMNLLLDTLCKERKVELAREIFLDL-KSHISPNANTFNIFIHGWC 199
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN-RISNIH 128
V+E+ QE+K G P V+ Y ++ Y + + Y LLDEM I N+
Sbjct: 200 KVNRVEEAYWTIQEMKGHGCTPCVISYSTIVQFYCHRSNFSKVYELLDEMEAQGLIPNV- 258
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT + ++ + ++ G FYN+L+ L G E A +V +
Sbjct: 259 -VTYTSVMSALAKSEEYEEALQIAQRMKSVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFE 317
Query: 189 -EATKRGLFPELFRHNKLV 206
E G+ P +N ++
Sbjct: 318 VEMPNTGVPPNTSTYNSMI 336
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 95/218 (43%), Gaps = 5/218 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M G+ N ++ +V+ A + +EEA++ M+ V C P+ +++
Sbjct: 245 LLDEMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRMKSVGCKPDTLFYNSLIHTLG 304
Query: 70 FAGLVDESKEQFQ-EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG +E+ + F+ E+ ++G+ P+ Y ++A+ ++ A LL E+ + I
Sbjct: 305 KAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQERKALNLLKEIEASIICKPD 364
Query: 129 -QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF--YNALLEALWCLGLRERAAR 185
Q ++K F S ++ + D + + + L + F Y L+ L E A
Sbjct: 365 VQTYYPLLKSCFKAGSIDSLLSQLLDDM-VKKHHLSLDFSAYTLLVHGLCRANKCEWAYC 423
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAI 223
+ +E + + P+ L+ V + M++ I
Sbjct: 424 LFEEMIGKDMTPKYQTCRLLLDEVKLKHMYDAAQKIEI 461
>gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1006; Flags: Precursor
gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana]
gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 723
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 2/200 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE I +MSE GV + D F ++++F G EEA+ EMEK N
Sbjct: 322 GRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIV 381
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ Y + ++E + F E++ G+ PS Y +L+ YA+ + D LL EM
Sbjct: 382 YNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREME 441
Query: 121 TNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ N+ T +I + M F ++ G Y AL+ A G
Sbjct: 442 DLGLEPNVKSYTC-LISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGW 500
Query: 180 RERAARVLDEATKRGLFPEL 199
E+A +E K G+ P +
Sbjct: 501 HEKAYASFEEMCKEGIKPSV 520
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 87/203 (42%), Gaps = 2/203 (0%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEE-AIKAYVEMEKVRCDPNERTLEAVL 65
+ +L M + G+ N S+ +I A+ + + + A A++ M+KV P+ + A++
Sbjct: 433 VETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALI 492
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
Y +G +++ F+E+ GI PSV Y +L + +S + M +I
Sbjct: 493 HAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIK 552
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
++ G F + + V + + G + YN L+ A G + +
Sbjct: 553 GTRITYNTLLDG-FAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQ 611
Query: 186 VLDEATKRGLFPELFRHNKLVWS 208
+L E L P+ ++ ++++
Sbjct: 612 LLKEMAALNLKPDSITYSTMIYA 634
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 58/119 (48%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +++ A M + G+ + +++ +V++AFR+ G + ++ + M + + T
Sbjct: 498 SGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRIT 557
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L + GL E+++ E G+ PSVM Y ML+ YA+ + LL EM
Sbjct: 558 YNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEM 616
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 48/251 (19%), Positives = 90/251 (35%), Gaps = 39/251 (15%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV-- 67
+LS + + R+ +NA I R+++A + Y M+K+ P+ T +++
Sbjct: 260 LLSNLPDKEEFRDVRLYNAAISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLR 319
Query: 68 ----------------------------------YCFAGLVDESKEQFQEIKSSGILPSV 93
+C GL +E+ E++ GI +
Sbjct: 320 KAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNT 379
Query: 94 MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD 153
+ Y L+ Y KSN ++ GL EM + T ++ + +VE +
Sbjct: 380 IVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKP-SAATYNILMDAYARRMQPDIVETLLR 438
Query: 154 KLNCEGYGLGMRFYNALLEAL-WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
++ G ++ Y L+ A + + AA K GL P + L+ + V
Sbjct: 439 EMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVS 498
Query: 213 RMWEGGAYTAI 223
W AY +
Sbjct: 499 G-WHEKAYASF 508
>gi|255661210|gb|ACU25774.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 426
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 95/230 (41%), Gaps = 36/230 (15%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC-------- 54
L++E ++++S M E+GV ++ S++ ++ + + +F EA+ + EM +++C
Sbjct: 94 LFREARSLISEMREAGVVPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCLVDLTTCN 153
Query: 55 ---------------------------DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87
+PN + +L VY A L E+ F+ ++
Sbjct: 154 IMIDVYGQLDMAKEADKLFWSMRKVGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
I +V+ Y ++ +Y K+ + A L+ EMH NR + +T I +
Sbjct: 214 DIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMH-NRGIEPNAITYSTIISIWGKVGKLDR 272
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+F KL G + Y ++ A GL A R+L E + P
Sbjct: 273 AAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIP 322
>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 36/232 (15%)
Query: 2 GLYKECQAILSRMSESG-VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +++ + + M G ++ +++A+I ++ + GR + AI+ + EM+ P E+
Sbjct: 211 GQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKI 270
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+L +Y G V+++ + F+E+K +G P+V Y L+ K+ R D+AYG +M
Sbjct: 271 YTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML 330
Query: 120 -------------------HTNRISNIHQVTGQM---------------IKGEFDDESNW 145
R+ + V +M IK F+ +++
Sbjct: 331 RDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHV 390
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
V FDK+ + Y+ L++ E+A +L+E ++G P
Sbjct: 391 SEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPP 442
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 8/211 (3%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
S ++N+VI Q G+ E+ + Y EM + C P+ T A++S Y G D +
Sbjct: 196 TSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRL 255
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140
F E+K + + P+ Y LL +Y K + + A L +EM S ++IKG
Sbjct: 256 FDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGK 315
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
+ + D L +G + F N L+ L +G E V E P +
Sbjct: 316 AGRVDEAYGFYKDMLR-DGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVV 374
Query: 201 RHNKLVWSVDVHRMWEGGAYTA-ISVWLNKM 230
+N ++ + ++E A+ + +S W +KM
Sbjct: 375 SYNTVIKA-----LFESKAHVSEVSSWFDKM 400
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 2/180 (1%)
Query: 25 SFNAVIEA-FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE 83
S+N VI+A F E + +M+ P+E T ++ YC V+++ +E
Sbjct: 375 SYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEE 434
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143
+ G P YC L+ K+ R++ A L E+ N + +V MIK F
Sbjct: 435 MDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSRVYAVMIK-HFGKCG 493
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+F+++ +G G + YNAL+ + G+ A +L + + G ++ HN
Sbjct: 494 KLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHN 553
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 90/202 (44%), Gaps = 12/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G ++ ++I A + R+E A + + E+++ + + R ++ +
Sbjct: 431 LLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSRVYAVMIKHFG 490
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS---N 126
G + E+ + F E+K+ G P V Y L++ K+ ++A LL +M N N
Sbjct: 491 KCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADIN 550
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
H + ++ G + +E +F+ + G YN LL G+ E AAR+
Sbjct: 551 SHNI---ILNGFARTGVPRRAIE-MFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARM 606
Query: 187 LDEATKRGLFPELFRHNKLVWS 208
+ E +G F ++ + +S
Sbjct: 607 MREMKDKG-----FEYDAITYS 623
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + M G + ++NA++ + G EA +ME+ C + +
Sbjct: 493 GKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSH 552
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L+ + G+ + E F+ IK SGI P + Y LL +A + +++A ++ EM
Sbjct: 553 NIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREM 610
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ E ++L +M E+G + +S N ++ F + G AI+ + ++ P+ T
Sbjct: 527 AGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVT 586
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
+L + AG+ +E+ +E+K G + Y +L
Sbjct: 587 YNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSIL 626
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 93/198 (46%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ M+ G+ +FN+V++ + RF++A + + M++ P+ R+ ++ +
Sbjct: 213 ALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGF 272
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G V+E+ + ++E++ G+ P V+ + L+ +++ + D A L EM +
Sbjct: 273 CRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVP-D 331
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
V M+ G F + V D++ G + YN LL L A +L+
Sbjct: 332 GVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLN 391
Query: 189 EATKRGLFPELFRHNKLV 206
E +RG+ P+L L+
Sbjct: 392 EMKERGVTPDLCTFTTLI 409
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 10/244 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E M + GV + SF+ +I F G+ + A EM+ + P+
Sbjct: 276 GEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIY 335
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ +C AG + E+ E+ G LP V+ Y LL K +R DA LL+EM
Sbjct: 336 TMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKE 395
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ +I G D N++ +FD L + + YN+L++ + G
Sbjct: 396 RGVTPDLCTFTTLIHGYCRD-GNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLA 454
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLP 241
+A + D+ R +FP N + +S+ + E G +L+ EM G +LP
Sbjct: 455 KANELWDDMHAREIFP-----NHVTYSILIDSHCEKGQVEEAFGFLD---EMVSKG-NLP 505
Query: 242 QLAT 245
+ T
Sbjct: 506 NIMT 509
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 1/177 (0%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N +++ +I++ + G+ EEA EM PN T +++ YC +G V + ++
Sbjct: 471 NHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFL 530
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
Q++ ILP ++ + L+ Y K A+ + + M + VT MI F +
Sbjct: 531 QKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQP-DAVTYNMIINGFSE 589
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+ N + VF K+ G Y +L+ G + A ++ DE RG P+
Sbjct: 590 QGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPD 646
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 91/236 (38%), Gaps = 36/236 (15%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCD-------- 55
+ + +L+ M E GV + +F +I + + G FE+A++ + + +++R D
Sbjct: 385 DAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLI 444
Query: 56 -------------------------PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGIL 90
PN T ++ +C G V+E+ E+ S G L
Sbjct: 445 DGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNL 504
Query: 91 PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150
P++M Y ++ Y +S L +M + I +I G + E N
Sbjct: 505 PNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHG-YIKEENMHGAFN 563
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
VF+ + E YN ++ G E A RV + G+ P+ + + L+
Sbjct: 564 VFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLI 619
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ Q L +M + + + +FN +I + + A + MEK P+ T
Sbjct: 521 GNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTY 580
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ + G ++E+ F+++ +SGI P Y L+ + + +A+ L DEM
Sbjct: 581 NMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEM 638
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 2/215 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + ++S M + V + + N +I+A + G + AI M P T +
Sbjct: 173 FDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNS 232
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
VL C D++KE F+ + + P V + +L+ + + ++A EM
Sbjct: 233 VLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRG 292
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
++ V+ + G F ++ G Y ++ G A
Sbjct: 293 VTP-DVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEA 351
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSV-DVHRMWEG 217
RV DE G P++ +N L+ + HR+ +
Sbjct: 352 LRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDA 386
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 63/150 (42%), Gaps = 1/150 (0%)
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
N TL ++ YC + D++ E++ + P V+ + +L+ ++ D A L+
Sbjct: 156 NAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALV 215
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
D M + ++KG + + VF ++ +R +N L+
Sbjct: 216 DSMANKGLKPGIVTFNSVLKG-LCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCR 274
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G E A + E +RG+ P++ + L+
Sbjct: 275 VGEVEEAMKFYKEMQQRGVTPDVVSFSCLI 304
>gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Vitis vinifera]
gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 111/248 (44%), Gaps = 39/248 (15%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLE 62
+ + +LS M+ G+ N+ ++N +I+A+ + RF E +EM + +C+P+ T+
Sbjct: 225 FDKVPVLLSDMANQGIKPNTVTYNTLIDAYGKAKRFAEMESTLLEMLREGKCEPDVWTMN 284
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+ L + +G ++ ++ +++ +S+GI P++ + +LL Y K+ +++ +++ M
Sbjct: 285 STLRAFGSSGQIETMEKCYEKFQSAGIEPNIKTFNILLDSYGKAEKYEKMSAVMEYMQKY 344
Query: 123 RIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE--------------GYG------ 161
S I VT ++ F + + +EY+F + E YG
Sbjct: 345 HFSWTI--VTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGRAGKAE 402
Query: 162 ---------------LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L + F+N L++A LG VL+ K+G P+ + ++
Sbjct: 403 KIGGVLRFIENSDVMLDIVFFNCLVDAYGRLGCFAEMKGVLEMMKKKGCKPDKITYRTMI 462
Query: 207 WSVDVHRM 214
+ + M
Sbjct: 463 KAYKIGGM 470
>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 36/232 (15%)
Query: 2 GLYKECQAILSRMSESG-VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +++ + + M G ++ +++A+I ++ + GR + AI+ + EM+ P E+
Sbjct: 211 GQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKI 270
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+L +Y G V+++ + F+E+K +G P+V Y L+ K+ R D+AYG +M
Sbjct: 271 YTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML 330
Query: 120 -------------------HTNRISNIHQVTGQM---------------IKGEFDDESNW 145
R+ + V +M IK F+ +++
Sbjct: 331 RDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHV 390
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
V FDK+ + Y+ L++ E+A +L+E ++G P
Sbjct: 391 SEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPP 442
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 8/211 (3%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
S ++N+VI Q G+ E+ + Y EM + C P+ T A++S Y G D +
Sbjct: 196 TSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRL 255
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140
F E+K + + P+ Y LL +Y K + + A L +EM S ++IKG
Sbjct: 256 FDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGK 315
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
+ + D L +G + F N L+ L +G E V E P +
Sbjct: 316 AGRVDEAYGFYKDMLR-DGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVV 374
Query: 201 RHNKLVWSVDVHRMWEGGAYTA-ISVWLNKM 230
+N ++ + ++E A+ + +S W +KM
Sbjct: 375 SYNTVIKA-----LFESKAHVSEVSSWFDKM 400
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 2/180 (1%)
Query: 25 SFNAVIEA-FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE 83
S+N VI+A F E + +M+ P+E T ++ YC V+++ +E
Sbjct: 375 SYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEE 434
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143
+ G P YC L+ K+ R++ A L E+ N + +V MIK F
Sbjct: 435 MDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIK-HFGKCG 493
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+F+++ +G G + YNAL+ + G+ A +L + + G ++ HN
Sbjct: 494 KLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHN 553
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 90/202 (44%), Gaps = 12/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G ++ ++I A + R+E A + + E+++ + + R ++ +
Sbjct: 431 LLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFG 490
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS---N 126
G + E+ + F E+K+ G P V Y L++ K+ ++A LL +M N N
Sbjct: 491 KCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADIN 550
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
H + ++ G + +E +F+ + G YN LL G+ E AAR+
Sbjct: 551 SHNI---ILNGFARTGVPRRAIE-MFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARM 606
Query: 187 LDEATKRGLFPELFRHNKLVWS 208
+ E +G F ++ + +S
Sbjct: 607 MREMKDKG-----FEYDAITYS 623
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + M G + ++NA++ + G EA +ME+ C + +
Sbjct: 493 GKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSH 552
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L+ + G+ + E F+ IK SGI P + Y LL +A + +++A ++ EM
Sbjct: 553 NIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREM 610
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ E ++L +M E+G + +S N ++ F + G AI+ + ++ P+ T
Sbjct: 527 AGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVT 586
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
+L + AG+ +E+ +E+K G + Y +L
Sbjct: 587 YNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSIL 626
>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 721
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + + M E G+ N +++ +I++F + G + AI +M K +
Sbjct: 206 GKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPY 265
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ YC G +K F E+ G+ P+V+ Y L++ Y W A+ + +EM
Sbjct: 266 NSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTA 325
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
IS +I G + + +F ++ YN ++E G
Sbjct: 326 KGISPNTYTFTAIISGLCRANMMAEAIR-LFGEMKERKIMPSEVTYNVMIEGHCRSGNIS 384
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +LDE +G P+ + + L+
Sbjct: 385 EAFHLLDEMVGKGFVPDTYTYRPLI 409
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + M+ G++ N+ +F A+I + EAI+ + EM++ + P+E T ++ +C
Sbjct: 319 VYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHC 378
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN--RISNI 127
+G + E+ E+ G +P Y L++ R +A +D++H + +++N+
Sbjct: 379 RSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNM 438
Query: 128 ---HQVTGQMIKGEFDD 141
V G +G F D
Sbjct: 439 CYSALVHGYCKEGRFKD 455
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 3/149 (2%)
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
++ LEA +V + G +E++ F+E+ G+ + + Y +L+ + + D+A G LD
Sbjct: 194 QKGLEA--NVVTYYGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLD 251
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+M I +I G + N +Y FD++ +G + Y +L+
Sbjct: 252 KMTKASIEFTVYPYNSLING-YCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNE 310
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G +A +V +E T +G+ P + ++
Sbjct: 311 GEWHKAFKVYNEMTAKGISPNTYTFTAII 339
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 87/248 (35%), Gaps = 41/248 (16%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + M E + + ++N +IE + G EA EM P+ T ++
Sbjct: 350 EAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLI 409
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA------------- 112
S C G V E+KE ++ + MCY L+ Y K R+ DA
Sbjct: 410 SGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVA 469
Query: 113 ----------------------YGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150
+GLL EMH + + + MI N +
Sbjct: 470 MDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMID-RHSKAGNLKEAFG 528
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVD 210
++D + EG + Y AL+ L GL ++A + E + P N + +
Sbjct: 529 LWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTP-----NHITYGCF 583
Query: 211 VHRMWEGG 218
+ + GG
Sbjct: 584 LDHLTRGG 591
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 9/209 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G++ + +A+L MS G+ NS +N +I A + GR +EA+ EM C+P+ +
Sbjct: 379 GMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSY 438
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C ++E++ F+ + G++ + + Y ++ + RW DA L EM
Sbjct: 439 NTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMIL 498
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ S +IK D N + +++ +G YN L+ L +E
Sbjct: 499 HGCSLDVVSYNGLIKAMCKD-GNVDRSLVLLEEMAEKGIKPNNVSYNILISEL----CKE 553
Query: 182 RAARVLDEATK----RGLFPELFRHNKLV 206
R R E +K +GL P++ +N L+
Sbjct: 554 RRVRDALELSKQMLNQGLAPDIVTYNTLI 582
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 5/215 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A+L M+ G ++ + VI A G EA EM + C + T
Sbjct: 173 GRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTF 232
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ V+ C G V E+ + + G +P VM Y LL + + D+A +L
Sbjct: 233 DDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAML----- 287
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R+ ++ V + G E +++ + +G Y+ L+ L LG
Sbjct: 288 GRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIG 347
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A R+L E K+G P + + ++ S + MW+
Sbjct: 348 SAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 382
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 93/235 (39%), Gaps = 38/235 (16%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +A+L R+ E V FN VI G+ EA + Y M C P+ T ++
Sbjct: 282 EARAMLGRVPELNVV----LFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILM 337
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G + + +E++ G P+V+ Y ++L + K+ WDD LL+EM ++
Sbjct: 338 HGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLT 397
Query: 126 NIHQVTGQMI-----KGEFDDE---------------------------SNWQM--VEYV 151
Q MI G D+ +N QM E++
Sbjct: 398 LNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHM 457
Query: 152 FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
F+ L EG YN ++ AL G + A R+ E G ++ +N L+
Sbjct: 458 FENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLI 512
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M+E G+ N+ S+N +I + R +A++ +M P+ T +++ C
Sbjct: 527 LLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLC 586
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
G + + +++ + + P ++ Y +L++ + K DDA LL+
Sbjct: 587 KMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNR 635
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + M G + + S+N +I+A + G + ++ EM + PN +
Sbjct: 484 GRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSY 543
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S C V ++ E +++ + G+ P ++ Y L+ K A LL+++H
Sbjct: 544 NILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHN 603
Query: 122 NRISNIHQ 129
N+H
Sbjct: 604 E---NVHP 608
>gi|147771903|emb|CAN75708.1| hypothetical protein VITISV_031421 [Vitis vinifera]
Length = 1313
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 89/191 (46%), Gaps = 2/191 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ E + + + G ++ +N +++A+ + +++A + M PNE T
Sbjct: 838 GLWAEAENVFIGKRDLGQKKDVVEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTWPNESTY 897
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ ++ LVDE+++ E++ G P + + ++A YA+ R DA G+ +EM
Sbjct: 898 NSLIQMFSGGDLVDEARDILAEMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVR 957
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ V G +I G F + N + F K++ G +L++A +G E
Sbjct: 958 LGVKPNEVVYGSLING-FSETGNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLE 1016
Query: 182 RAARVLDEATK 192
A+ L E K
Sbjct: 1017 -GAKTLYEGMK 1026
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 2/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G L E + IL+ M + G +F+AVI + + GR +A+ Y EM ++ PNE
Sbjct: 907 GDLVDEARDILAEMQKMGFKPQCLTFSAVIACYARLGRLPDAVGVYEEMVRLGVKPNEVV 966
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++++ + G V+E+ F+++ GI + + L+ Y+K + A L + M
Sbjct: 967 YGSLINGFSETGNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMK 1026
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ MI + D + +FD L +G G+ F ++ LG+
Sbjct: 1027 DLEGGPDIVASNSMIN-LYADLGLVSEAKLIFDDLRQKGSADGVSF-ATMMYLYKNLGML 1084
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A V DE + G + NK++
Sbjct: 1085 DEAIDVADEMKQSGFLRDCASFNKVM 1110
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 61/124 (49%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K+ + + M + GVA ++ +FN +I G EA EME+ P+ +T
Sbjct: 663 AGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSHGHLSEAETLLTEMEERGISPDTKT 722
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
LS+Y G +D + + +++I+ G+ P V+ + +L V + N + ++ EM
Sbjct: 723 YNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTHRAVLHVLCERNMVGEVETVIAEMK 782
Query: 121 TNRI 124
+R+
Sbjct: 783 RSRV 786
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 89/217 (41%), Gaps = 8/217 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L+ M E G++ ++ ++N + + GG + A+K Y ++ +V P+ T
Sbjct: 699 GHLSEAETLLTEMEERGISPDTKTYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTH 758
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
AVL V C +V E + E+K S + +++ +Y D A +
Sbjct: 759 RAVLHVLCERNMVGEVETVIAEMKRSRVRVDEHSIPVVIKMYVNEGLLDKAK--IFLEEH 816
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ T I + ++ W E VF G + YN +++A L +
Sbjct: 817 LLEDELSSRTRVAIIDAYAEKGLWAEAENVFIGKRDLGQKKDVVEYNVMVKAYGKAKLYD 876
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+A + G +P +N L+ +M+ GG
Sbjct: 877 KAFSLFKGMRNHGTWPNESTYNSLI------QMFSGG 907
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 102/282 (36%), Gaps = 66/282 (23%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +M E G++ N ++I+A+ + G E A Y M+ + P+
Sbjct: 978 GNVEEALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMKDLEGGPDIVAS 1037
Query: 62 EAVLSVYCFAGLVDESKEQFQ----------------------------------EIKSS 87
+++++Y GLV E+K F E+K S
Sbjct: 1038 NSMINLYADLGLVSEAKLIFDDLRQKGSADGVSFATMMYLYKNLGMLDEAIDVADEMKQS 1097
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI---SNIHQVTGQMIK-GEFDDES 143
G L + ++A YA + + LL EM + RI + +V ++K G E+
Sbjct: 1098 GFLRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVMFTVLKKGGLPTEA 1157
Query: 144 NWQM---------------VEYVFDKL--------NCEGY-----GLGMRFYNALLEALW 175
Q+ + VF + +CE + L FYN + A
Sbjct: 1158 VTQLESSYQEGKPYARQAVITSVFSTVGLHAFALESCETFLNAEVDLDSSFYNVAIYAYG 1217
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEG 217
G ++A ++ + GL P+L + L M EG
Sbjct: 1218 ASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGMLEG 1259
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 48/98 (48%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
+S +N I A+ G ++A+K +++M+ +P+ T + Y AG+++ K +
Sbjct: 1205 DSSFYNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYINLAGCYGKAGMLEGLKRIY 1264
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++K I P+ + ++ Y + R D A + EM
Sbjct: 1265 SQLKYREIEPNESLFKAIIDAYRSAKRHDLAELVSQEM 1302
>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
Length = 625
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M + G+ FN ++ A+ + + +EA+ + M + +P+
Sbjct: 362 GALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNY 421
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
VL + C AG VD++ QF +KS G+ P+++ + L+ ++WD L EM
Sbjct: 422 GTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEM-I 480
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL-GLR 180
+R + + I G + + +FD + G YN L++ +CL G
Sbjct: 481 DRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDG-YCLDGKM 539
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A ++L G+ P +N ++
Sbjct: 540 DEAMKLLGVMVFNGVKPSDVTYNTII 565
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 84/207 (40%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +RM ++GV + + +++ + G+ +EAI + +M + +P+ T A++ C
Sbjct: 265 VFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLC 324
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G P Y LL YA + + LLD M + H
Sbjct: 325 KNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHH 384
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ MI G + + VF + +G + Y +L+ L G + A +
Sbjct: 385 IF-NMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNS 443
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
GL P + L+ + W+
Sbjct: 444 LKSEGLAPNIVVFTTLIHGLCTCDKWD 470
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G+ ++ FNA++ + GR EA + M ++ +PN T ++ YC G
Sbjct: 479 MIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGK 538
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+DE+ + + +G+ PS + Y ++ Y+++ R +D LL EM
Sbjct: 539 MDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREM 584
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/210 (18%), Positives = 90/210 (42%), Gaps = 6/210 (2%)
Query: 2 GLYKECQ-----AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GL +E Q ++ M + G + + +++++I A + ++A + + M K P
Sbjct: 217 GLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMP 276
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+ +++ YC +G E+ F+++ G+ P V+ Y L+ K+ + +A +
Sbjct: 277 DCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIF 336
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
D + G ++ G + E + + D + +G LG +N ++ A
Sbjct: 337 DSLVKRGHKPDSTTYGTLLHG-YATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAK 395
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ A V ++GL P++ + ++
Sbjct: 396 HNKVDEALLVFSNMRQQGLNPDIVNYGTVL 425
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 11/178 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE I +M GV + ++ A+++ + G+ EA K + + K P+ T
Sbjct: 292 GKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTY 351
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + + G+ + M++ YAK N+ D+A + M
Sbjct: 352 GTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQ 411
Query: 122 NRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
++ G ++ G DD + F+ L EG + + L+ L
Sbjct: 412 QGLNPDIVNYGTVLDILCTAGRVDDALSQ------FNSLKSEGLAPNIVVFTTLIHGL 463
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 3/208 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNE 58
GG +L RM E G + S+ +++ ++A+ M K RC +
Sbjct: 149 GGRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDV 208
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
V++ G +D++ F + G P V+ Y +++ +K+ D A +
Sbjct: 209 VAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTR 268
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M N + + ++ G + + +F K+ G + Y AL++ L G
Sbjct: 269 MVKNGVMPDCIMYTSLVHGYCSSGKPKEAIG-IFKKMCRHGVEPDVVTYTALMDYLCKNG 327
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
A ++ D KRG P+ + L+
Sbjct: 328 KSTEARKIFDSLVKRGHKPDSTTYGTLL 355
>gi|414872586|tpg|DAA51143.1| TPA: empty pericarp4 [Zea mays]
Length = 595
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 13/202 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L+RM + VA + FN ++ F GRFE+A + +ME+ C PN +
Sbjct: 203 GKLDEAKHVLARMKAADVALDVVVFNTLLAGFVAEGRFEDAFELAGQMEQRGCPPNAVSY 262
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G VDE+ F E++ G P + Y L+ + K+ + Y LD M
Sbjct: 263 TTLIQGLGARGRVDEAMRVFVEMRRKGCAPDAVTYGTLVNTFCKAGKISQGYEFLDAMSR 322
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKL------NCEGYGLGMRFYNALLEALW 175
+ + +V + G F + +E + + C ++ YN ++
Sbjct: 323 DGL----RVDAAVYHGFFVAHEKKEQLEECLELMERMRECRCPP---DLKIYNVVIRLAC 375
Query: 176 CLGLRERAARVLDEATKRGLFP 197
LG ++A + +E GL P
Sbjct: 376 RLGETKQAMTLWNEMESAGLSP 397
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Query: 47 VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
VE + R + R A+L +C G +DE+K +K++ + V+ + LLA +
Sbjct: 178 VEELQPRLPLSLRHYTALLYGWCRQGKLDEAKHVLARMKAADVALDVVVFNTLLAGFVAE 237
Query: 107 NRWDDAYGLLDEMH-----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
R++DA+ L +M N +S + G +G D+ VF ++ +G
Sbjct: 238 GRFEDAFELAGQMEQRGCPPNAVSYTTLIQGLGARGRVDEAMR------VFVEMRRKGCA 291
Query: 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
Y L+ G + LD ++ GL
Sbjct: 292 PDAVTYGTLVNTFCKAGKISQGYEFLDAMSRDGL 325
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE ++L +M G + S++ +++ + Q + + +K E+++ PN+ T
Sbjct: 266 GKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTY 325
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++S C G V E+++ + +K+ I P + Y L++ + KS Y L DEM
Sbjct: 326 NSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKR 385
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+I MI G +F ++ +G Y AL++ G +
Sbjct: 386 KKIVPDFVTYTSMIHG-LCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMK 444
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + ++ ++GL P + + LV
Sbjct: 445 EAFSLHNQMVEKGLTPNVVTYTALV 469
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 86/209 (41%), Gaps = 1/209 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + + ++ ++I Q G+ EA K + EM P+E T A++ YC
Sbjct: 379 LFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYC 438
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG + E+ ++ G+ P+V+ Y L+ K D A LL EM +
Sbjct: 439 KAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVC 498
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G N + + ++++ G+ Y +++A +G +A +L
Sbjct: 499 TYNALING-LCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRI 557
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+GL P + N L+ + M E G
Sbjct: 558 MLDKGLQPTIVTFNVLMNGFCMSGMLEDG 586
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 21/216 (9%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + + S M G+ + ++ A+I+ + + G +EA + +M + PN T
Sbjct: 405 AGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVT 464
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ C G VD + E E+ G+ P+V Y L+ K + A L++EM
Sbjct: 465 YTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMD 524
Query: 121 T----------NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
I + + G+M K +++ + DK G + +N L
Sbjct: 525 LAGFFPDTITYTTIMDAYCKMGEMAKAH-------ELLRIMLDK----GLQPTIVTFNVL 573
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ G+ E R++ +G+ P N L+
Sbjct: 574 MNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLM 609
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ SE GV N+ S+N ++ Q G+ +EA ++ME P+ + ++ YC
Sbjct: 239 VFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYC 298
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ + + +E++ G+ P+ Y +++ K+ R +A +L M RI +
Sbjct: 299 QVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNV 358
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I G F N + +FD++ + Y +++ L G A ++ E
Sbjct: 359 VYTTLISG-FGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSE 417
Query: 190 ATKRGLFPELFRHNKLV 206
+GL P+ + L+
Sbjct: 418 MLSKGLKPDEVTYTALI 434
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 80/194 (41%), Gaps = 1/194 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +L M + G+ +FN ++ F G E+ + M PN T
Sbjct: 546 GEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTF 605
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC + + E ++ + + G++P Y +L+ + K+ +A+ L EM
Sbjct: 606 NSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVE 665
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
S +IKG F ++ +F+++ G+ Y+ ++ + G E
Sbjct: 666 KGFSLTAASYNSLIKG-FYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWE 724
Query: 182 RAARVLDEATKRGL 195
+ DEA ++ L
Sbjct: 725 NTLELCDEAIEKCL 738
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/224 (18%), Positives = 83/224 (37%), Gaps = 36/224 (16%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L MSE G+ N ++NA+I + G E+A+K EM+ P+ T ++ YC
Sbjct: 484 LLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYC 543
Query: 70 -----------------------------------FAGLVDESKEQFQEIKSSGILPSVM 94
+G++++ + + + GI+P+
Sbjct: 544 KMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNAT 603
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
+ L+ Y N + MH + +IKG N + ++ +
Sbjct: 604 TFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHC-KARNMKEAWFLHKE 662
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
+ +G+ L YN+L++ + E A ++ +E G E
Sbjct: 663 MVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAE 706
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 40/242 (16%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + ++ +M +S N + ++I+ F + GR E+ K Y EM C P+ L
Sbjct: 496 GRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLL 555
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA-------------------- 101
+ + AG V++ + F+EIK+ G++P V Y +L+
Sbjct: 556 NSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKE 615
Query: 102 ---------------VYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG--EFDDESN 144
+ KS + D AY LL+EM T + G ++ G + D
Sbjct: 616 QGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDE 675
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
M +F++ G L + Y++L++ +G + A +L+E ++GL P + N
Sbjct: 676 AYM---LFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNC 732
Query: 205 LV 206
L+
Sbjct: 733 LL 734
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 12/203 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL--- 65
+ +M E G N F ++ F + GR + A+ EM+ N T + VL
Sbjct: 224 TLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKS-----NSFTADLVLYNV 278
Query: 66 SVYCFA--GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+ CF G VD + + F E+K+ G++P + Y L+ V K+ R D+A L +E+ NR
Sbjct: 279 CIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNR 338
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
MI G + + + ++ +G + YN +L L G E A
Sbjct: 339 SVPCVYAYNTMIMG-YGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEA 397
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
R+ DE ++ P L +N L+
Sbjct: 398 LRIHDE-MRQDAAPNLTTYNILI 419
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 3/186 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E IL + + G+ NS ++N +++A + +EA + M+ ++C PN T
Sbjct: 706 GRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTY 765
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C +++ +QE++ G+ P+ + Y ++A AK+ +A GL D
Sbjct: 766 SIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKA 825
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEY-VFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ MI+G +N M Y VF++ +G + + LL+AL
Sbjct: 826 SGGVPDSACYNAMIEGL--SSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCL 883
Query: 181 ERAARV 186
E+AA V
Sbjct: 884 EQAAIV 889
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 9/210 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E + M E G+ + ++N VI+ F + G+ ++A + EM+ P T
Sbjct: 600 AGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVT 659
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE-M 119
+V+ +DE+ F+E KS G+ +V+ Y L+ + K R D+AY +L+E M
Sbjct: 660 YGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELM 719
Query: 120 HTNRISNIHQ---VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N + + ++K E DE+ Q+ L C + Y+ ++ L
Sbjct: 720 QKGLTPNSYTWNCLLDALVKAEEIDEA--QVCFQNMKNLKCSPNAMT---YSIMINGLCM 774
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +A E K+GL P + ++
Sbjct: 775 IRKFNKAFVFWQEMQKQGLKPNNITYTTMI 804
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 88/193 (45%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E+G+ N + N +I+ + + +EA ++ ++ C P+ RT +++ G
Sbjct: 438 MKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGR 497
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
VD++ ++++ S +P+V+ Y L+ + K R +D + + EM S +
Sbjct: 498 VDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNS 557
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ F + +F+++ +G +R Y+ L+ L G ++ E ++
Sbjct: 558 YMDCVF-KAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQ 616
Query: 194 GLFPELFRHNKLV 206
GL ++ +N ++
Sbjct: 617 GLHLDVLAYNTVI 629
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 91/203 (44%), Gaps = 14/203 (6%)
Query: 20 ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKE 79
A N ++N +I+ + G E A+K M++ PN T+ ++ C A +DE+
Sbjct: 409 APNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACS 468
Query: 80 QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQVTGQMIKGE 138
F + P +C L+ + R DDAY L ++M +++I N+ V +I+
Sbjct: 469 IFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNV-VVYTSLIQNF 527
Query: 139 FD---DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
F E + ++ ++ G + N+ ++ ++ G E+ + +E +GL
Sbjct: 528 FKCGRKEDGHK----IYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGL 583
Query: 196 FPELFRHNKLVWSVDVHRMWEGG 218
P++ +S+ +H + + G
Sbjct: 584 VPDVRS-----YSILIHGLVKAG 601
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 8/192 (4%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++I GV N ++++I+ F + GR +EA E+ + PN T
Sbjct: 679 LFEEAKSI-------GVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWN 731
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+L A +DE++ FQ +K+ P+ M Y +++ +++ A+ EM
Sbjct: 732 CLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQ 791
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ + MI G N +FD+ G YNA++E L
Sbjct: 792 GLKPNNITYTTMIAG-LAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMD 850
Query: 183 AARVLDEATKRG 194
A V +E +G
Sbjct: 851 AYIVFEETRLKG 862
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ IL MS +G ++ ++ +F + + +EA M K + P ++
Sbjct: 153 EQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGA 212
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
A D F +++ G +V + L+ V+A+ R D A LLDEM +N +
Sbjct: 213 LSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFT 270
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 81/190 (42%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+++RM G+ + ++N ++ + G+ EE ++ + ME+ C PN T ++ C
Sbjct: 457 MVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLC 516
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A V+E+ + E+KS G+ P V+ + L + K D AY L M
Sbjct: 517 KAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTT 576
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
T +I F ++ N M +F + G Y +++ +G + + L E
Sbjct: 577 ATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLE 636
Query: 190 ATKRGLFPEL 199
++ P L
Sbjct: 637 NMEKRFIPSL 646
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 16/216 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR---FEEAIKAYVEMEKVRCDPNE 58
G ++E + +LS M E+ N+ A IEA + GR +EA+ + M+ CDP+
Sbjct: 54 GEFEEMEKLLSEMREN--VNNALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSV 111
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+ A++++ G +++ + + ++ G+ V Y + + + K+ R A LL
Sbjct: 112 HSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRN 171
Query: 119 M-----HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
M +N ++ V G GE D +FD++ + +N L+
Sbjct: 172 MPELGCDSNAVAYCTVVAGLYDSGEHDHARE------LFDEMLARCLCPDVVAFNKLVHV 225
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
L GL + R+L + KRG+ P LF N V +
Sbjct: 226 LCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGL 261
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 103/245 (42%), Gaps = 21/245 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKA--YVEMEKVR------ 53
GL E + +L ++ + GV N +FN ++ + G + A++ VE E+
Sbjct: 230 GLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNG 289
Query: 54 -CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+P++ T +++ YC G+V ++ ++ G P YC L+ + K D A
Sbjct: 290 GFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRA 349
Query: 113 YGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
+ + + + +IKG + + +++ G + YN ++
Sbjct: 350 MAVFKDGLGKGLRPSIVLYNTLIKG-LSQQGLILPALQLMNEMAENGCLPNIWTYNLVIN 408
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV------WSVD-----VHRMWEGGAYT 221
L +G A+ ++D+A +G P++F +N L+ +D V+RMW G
Sbjct: 409 GLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTP 468
Query: 222 AISVW 226
+ +
Sbjct: 469 DVITY 473
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 97/215 (45%), Gaps = 12/215 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + RM + GV + ++ I++F + R A++ M ++ CD N
Sbjct: 125 GYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAY 184
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V++ +G D ++E F E+ + + P V+ + L+ V K ++ LL ++
Sbjct: 185 CTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLK 244
Query: 122 NRIS------NIHQVTGQMIKGEFDDE-SNWQMV---EYVFDKLNCEGYGLGMRFYNALL 171
+ NI V G +G D N ++V EY+ +N G+ YN+++
Sbjct: 245 RGVCPNLFTFNIF-VQGLCREGALDRAVRNSRVVEAEEYLRKMVN-GGFEPDDLTYNSII 302
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ G+ + A RVL +A +G P+ F + L+
Sbjct: 303 DGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLI 337
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 45/101 (44%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
V + ++N ++ AF + A+K + M+ CDP+ T V+ +C G + +
Sbjct: 572 VCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGY 631
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ E +PS+ + +L ++ +A G++ M
Sbjct: 632 KFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLM 672
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 50/118 (42%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +++ M+E+G N ++N VI + G +A + C P+ T
Sbjct: 379 GLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTY 438
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ YC +D + E + S G+ P V+ Y LL K+ + ++ + M
Sbjct: 439 NTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAM 496
>gi|224103987|ref|XP_002313272.1| predicted protein [Populus trichocarpa]
gi|222849680|gb|EEE87227.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 1/180 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ +SE ++ N I AF + G+F++AI + +ME ++C P+ T VL +
Sbjct: 185 LVKEVSELTFPSSTKVVNRFIFAFAECGQFDKAILIFEQMENLKCKPDLVTYNTVLDLLG 244
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG +DE +F +K +GILP + Y LL K R D +M N I
Sbjct: 245 RAGRIDEMLGEFASMKEAGILPDFISYNTLLNQLTKVGRLDLCSVYFRDMVGNGIEP-DL 303
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T + F N + +F+++ + + Y +L+ +L +G E A L+E
Sbjct: 304 LTYTALIWSFGQSGNIEESLRLFNEMKTKQIRPSIYIYRSLIASLKKMGKIELAMTFLEE 363
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
+ M E+G+ + S+N ++ + GR + + +M +P+ T A++ +
Sbjct: 256 FASMKEAGILPDFISYNTLLNQLTKVGRLDLCSVYFRDMVGNGIEPDLLTYTALIWSFGQ 315
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+G ++ES F E+K+ I PS+ Y L+A K + + A L+EM+ + +SN+
Sbjct: 316 SGNIEESLRLFNEMKTKQIRPSIYIYRSLIASLKKMGKIELAMTFLEEMNAS-MSNL 371
>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
Length = 481
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 102/218 (46%), Gaps = 10/218 (4%)
Query: 8 QAILSRMSE----SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLE 62
QA L M E G+A + ++ +I + + GR E+A K + EM + P+
Sbjct: 164 QAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYN 223
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
A++ YC G +D + + +++ G+ +V Y +L+ R DAY +L+EM N
Sbjct: 224 ALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRN 283
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+S +I G + E N + VF++++ +G Y +L+ A G +
Sbjct: 284 GLSPDVFTYNILING-YCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQE 342
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSV----DVHRMWE 216
R+ A K+G+ P++ +N L+ S D+ R +E
Sbjct: 343 TDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFE 380
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 21/196 (10%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + GVA ++N ++ A GR +A EM++ P+ T +++ YC G
Sbjct: 245 MVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGN 304
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL----------DEMHTNR 123
++ E F+E+ G+ + + Y L+ +++ + + L D + N
Sbjct: 305 EKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNA 364
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ N H G M + F+ + + D + YN L+ LG + A
Sbjct: 365 LINSHCAGGDMERA-FEIMAEMEKKRIPPDDVT----------YNTLIRGFCLLGRLDEA 413
Query: 184 ARVLDEATKRGLFPEL 199
++DE TKRG+ P+L
Sbjct: 414 RGLIDEMTKRGIQPDL 429
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 3/141 (2%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K+ + MS GV + ++ ++I AF + G+ +E + + K P+ A+
Sbjct: 306 KKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNAL 365
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
++ +C G ++ + E E++ I P + Y L+ + R D+A GL+DEM T R
Sbjct: 366 INSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEM-TKR- 423
Query: 125 SNIHQVTGQMIKGEFDDESNW 145
I G G+ DD N
Sbjct: 424 -GIQPDLGLCKNGQGDDAENL 443
>gi|2191192|gb|AAB61077.1| similar to N. tabacum membrane-associated salt-inducible protein
(PID:g473874) [Arabidopsis thaliana]
Length = 934
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 68/123 (55%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E GV N ++ V+ ++ + G EEA+KA+ EM+ + P E T +V+S+ AG
Sbjct: 275 MVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGD 334
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+++ +++++S GI+PS +L++Y K+ + A L +M N+I + G
Sbjct: 335 WEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGL 394
Query: 134 MIK 136
+I+
Sbjct: 395 IIR 397
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 58/111 (52%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+ E + ++ +N ++ + ++ + I ++EM + PNE T V+S Y G
Sbjct: 240 VQERRILLSTSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGF 299
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+E+ + F E+KS G +P + Y ++++ K+ W+ A GL ++M + I
Sbjct: 300 KEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGI 350
>gi|15240478|ref|NP_198079.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635757|sp|O04647.2|PP399_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g27270; AltName: Full=Protein EMBRYO DEFECTIVE 976
gi|332006282|gb|AED93665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1038
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 68/123 (55%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E GV N ++ V+ ++ + G EEA+KA+ EM+ + P E T +V+S+ AG
Sbjct: 284 MVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGD 343
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+++ +++++S GI+PS +L++Y K+ + A L +M N+I + G
Sbjct: 344 WEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGL 403
Query: 134 MIK 136
+I+
Sbjct: 404 IIR 406
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 58/111 (52%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+ E + ++ +N ++ + ++ + I ++EM + PNE T V+S Y G
Sbjct: 249 VQERRILLSTSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGF 308
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+E+ + F E+KS G +P + Y ++++ K+ W+ A GL ++M + I
Sbjct: 309 KEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGI 359
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 50/103 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I S SG+ + + +I + +GG+ EA+ + EM+K P + ++ +
Sbjct: 831 IFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSYNMMVKICA 890
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+ L E E Q ++ +G + Y L+ VYA+S+++ +A
Sbjct: 891 TSRLHHEVDELLQAMERNGRCTDLSTYLTLIQVYAESSQFAEA 933
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 57/135 (42%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E + I E + ++ +N +I+A + G+ + A + Y M + +T
Sbjct: 753 GKHREAEHISRTCLEKNIELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTY 812
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++SVY +D++ E F + SG+ Y ++ Y K + +A L EM
Sbjct: 813 NTMISVYGRGLQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEMQK 872
Query: 122 NRISNIHQVTGQMIK 136
I M+K
Sbjct: 873 KGIKPGTPSYNMMVK 887
>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
Length = 1480
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ + SG+ ++ ++N +I A + EEA K + +ME C P+ T A++SVY
Sbjct: 313 LLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYG 372
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL ++++ F +++S G P + Y LL +A+ + + +EM
Sbjct: 373 RCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEM 432
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
MI + + ++ ++ + G Y L+++L AA V+ E
Sbjct: 433 TYNTMIHM-YGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSE 491
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P L ++ L+
Sbjct: 492 MLNTGVKPTLKTYSALI 508
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 97/217 (44%), Gaps = 3/217 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y+ +AI + M G + D+ N +++A GR +E E++ + ++ +
Sbjct: 826 SGCYERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSS 885
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +L + AG + E K+ + +K++G P++ Y ++ + ++ + D +L EM
Sbjct: 886 ILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEME 945
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ ++K E + ++ V+ ++ +G YN L+ ++C R
Sbjct: 946 EAGFKPDLSIWNSVLKMYVAIEDFRKTIQ-VYQRIKEDGLEPDEDTYNTLI-VMYCRDHR 1003
Query: 181 -ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E ++ E GL P+L + LV S ++ E
Sbjct: 1004 PEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVE 1040
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 69/136 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL + + + + + G ++ S+N+++ AF + G E+ + + EM K+ +E T
Sbjct: 375 GLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTY 434
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +Y G + + + +++++SSG P + Y +L+ K+N+ +A G++ EM
Sbjct: 435 NTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLN 494
Query: 122 NRISNIHQVTGQMIKG 137
+ + +I G
Sbjct: 495 TGVKPTLKTYSALICG 510
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 61/121 (50%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +A+LS M E+G + +N+V++ + F + I+ Y +++ +P+E T
Sbjct: 931 GKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDT 990
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ +YC +E E++ +G+ P + Y L+A + K + A L +E+
Sbjct: 991 YNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQ 1050
Query: 121 T 121
+
Sbjct: 1051 S 1051
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/196 (17%), Positives = 79/196 (40%), Gaps = 38/196 (19%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG-- 72
+E +NA++ + + GRF + + M + C P+ + +++ AG
Sbjct: 246 AEPSAGNTVQVYNAMMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAM 305
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ + + E E++ SG+ P + Y L++ ++++ ++A + D+M H
Sbjct: 306 MPNLAIELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEA------HHCQP 359
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+ W YNA++ GL +A ++ ++
Sbjct: 360 DL----------WT--------------------YNAMISVYGRCGLSGKAEQLFNDLES 389
Query: 193 RGLFPELFRHNKLVWS 208
RG FP+ +N L+++
Sbjct: 390 RGFFPDAVSYNSLLYA 405
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 35/165 (21%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M SG ++ ++ +I++ + + EA EM P +T A++ Y AG
Sbjct: 457 MQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALICGYAKAGK 516
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-------------- 119
E++E F + SGI P + Y ++L ++ + N A L EM
Sbjct: 517 PVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAMTLYKEMLHDGITLDHSLYEL 576
Query: 120 ------HTNRISNIHQVTGQM---------------IKGEFDDES 143
N++ +I +V M +KGE DE+
Sbjct: 577 MLRTLRKVNKVEDIGRVIRDMEEICGMNTQTISSILVKGECYDEA 621
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 104/254 (40%), Gaps = 32/254 (12%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+++ +++ + + + + +NA+IEA+ G +E A + M + P T+
Sbjct: 793 LWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCYERARAIFNTMMRDGPSPTVDTIN 852
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD---------AY 113
+L G +DE QE++ G S ++L +A++ + A
Sbjct: 853 GLLQALIVDGRLDELYVVVQELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAA 912
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
G MH R+ G+ ++ VE + ++ G+ + +N++L+
Sbjct: 913 GYFPTMHLYRVMARLLSRGKQVRD----------VEAMLSEMEEAGFKPDLSIWNSVLKM 962
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV--WSVDVHRMWEGGAYTAISVWLNKMY 231
+ + +V + GL P+ +N L+ + D HR EG + M+
Sbjct: 963 YVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRD-HRPEEG---------FSLMH 1012
Query: 232 EMFMMGEDLPQLAT 245
EM + G + P+L T
Sbjct: 1013 EMRVAGLE-PKLDT 1025
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/204 (19%), Positives = 85/204 (41%), Gaps = 9/204 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + + S M ++GV + + ++ ++ G+ +EA K +++ + +
Sbjct: 1071 SGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLP 1130
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+V+ Y G + ++ ++K G+ P + + + S R +A LL+ +
Sbjct: 1131 YSSVIDAYLRNGDYNIGIQKLIQMKKEGLEPDHRIWTCFIRAASLSRRTSEAIVLLNALQ 1190
Query: 121 TNRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
I +T + ES ++ + L F NAL + LW L
Sbjct: 1191 DAGFDLPIRLLTEK-------PESLVSALDRCLEMLETLEDNAAFNFVNALEDLLWAFEL 1243
Query: 180 RERAARVLDEATKRGLF-PELFRH 202
R A+ V A K+ ++ ++FRH
Sbjct: 1244 RATASWVFQLAIKKRIYRHDVFRH 1267
>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g22960, mitochondrial; Flags: Precursor
gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 718
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 7/183 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I F + G+ EEA + + +M + + ++ YC GL D++ E+
Sbjct: 275 TYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEM 334
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK-GEFDDES 143
++GI P+ Y + + R DDA LL M + + + + IK G+F + S
Sbjct: 335 LNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEAS 394
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+FD L + YN L++ L G E A R+ +E T + +FP++ +
Sbjct: 395 ------LLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYT 448
Query: 204 KLV 206
LV
Sbjct: 449 TLV 451
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +K + + M + + ++ +I + GR E+A + EM+K PN T
Sbjct: 563 NGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMT 622
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+L C AG +DE+ +++ GI P+ Y ML++ +W++ L EM
Sbjct: 623 HNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEM 681
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G+ + ++ VI + + G+F+ A Y EM + R P+ T ++ + AG ++++
Sbjct: 545 GLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQA 604
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ E+K G+ P+VM + LL K+ D+AY L +M
Sbjct: 605 FQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKM 646
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 5/188 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + + M +G+ + ++N I A GR ++A + M P+ +
Sbjct: 322 GLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM----AAPDVVSY 377
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G E+ F ++++ I PS++ Y L+ +S + A L +EM T
Sbjct: 378 NTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTT 437
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I ++KG F N M V+D++ +G Y LG +
Sbjct: 438 QLIFPDVITYTTLVKG-FVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSD 496
Query: 182 RAARVLDE 189
+A R+ +E
Sbjct: 497 KAFRLHEE 504
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/208 (18%), Positives = 87/208 (41%), Gaps = 10/208 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M+ V S+N ++ + + G+F EA + ++ P+ T
Sbjct: 357 GRIDDARELLSSMAAPDVV----SYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTY 412
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C +G ++ ++ +E+ + I P V+ Y L+ + K+ A + DEM
Sbjct: 413 NTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLR 472
Query: 122 NRISNIHQVTGQMIKGEF---DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
I GE D + +++ E + + + + + YN ++ L +G
Sbjct: 473 KGIKPDGYAYTTRAVGELRLGDSDKAFRLHE---EMVATDHHAPDLTIYNVRIDGLCKVG 529
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
+A + + GL P+ + ++
Sbjct: 530 NLVKAIEFQRKIFRVGLVPDHVTYTTVI 557
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+S + + ++N +I F +GG+ + A M+ C PN A++ C G
Sbjct: 296 VSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGK 355
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++++K EIK SG+ P + Y L+ ++ + D+A LL+EM N VT
Sbjct: 356 LEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENG-CQADSVTFN 414
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ G E ++ + +KL +G L Y +L +L +RA +L +R
Sbjct: 415 VLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRR 474
Query: 194 GLFPELFRHNKLV 206
G P N+L+
Sbjct: 475 GFQPHYATSNELL 487
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 60/119 (50%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + ++ M +G N +++A+++ + G+ E+A E++ P+ T
Sbjct: 318 GGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVT 377
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++++ C G DE+ E +E+K +G + + +LL + ++++A +++++
Sbjct: 378 YTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKL 436
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/200 (19%), Positives = 86/200 (43%), Gaps = 3/200 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVY 68
+L +M+ + F +++ F + E+ + AY ++ VR P+ + L L++
Sbjct: 148 VLHQMTYETCKFHEGIFVNLMKHFSKSSLHEKLLHAYFSIQPIVREKPSPKALSTCLNLL 207
Query: 69 CFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ VD +++ K P+V + +L+ + K+ D A+ +++EM + S
Sbjct: 208 LDSNRVDLARKLLLHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYP 267
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF-YNALLEALWCLGLRERAARV 186
+ VT + + +F+++ + + YN L+ G +RA V
Sbjct: 268 NLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNV 327
Query: 187 LDEATKRGLFPELFRHNKLV 206
+ G +P ++ ++ LV
Sbjct: 328 IQFMKSNGCYPNVYNYSALV 347
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++E ++ ++ + GV N S+ V+ + Q + A + M + P+ T
Sbjct: 424 GKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATS 483
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L C AG+VD++ ++ G P + + +L+ + + + + LLDE+
Sbjct: 484 NELLVCLCKAGMVDDAAVALFDLVEMGFQPGLETWEVLIGLICRERKLLYVFELLDEL 541
>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 539
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 90/192 (46%), Gaps = 5/192 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Q +L +M E+G N+ +FNA++ A + GR E+ ++ + +M ++ CDP+ T
Sbjct: 292 AGQVPRAQELLCQMMETGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIIT 351
Query: 61 LEAVLSVYCFAGL--VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
++ +C G +D + + ++ + G +P + +L + + + A L +
Sbjct: 352 YNFLMETHCGKGQSNLDAAMKVLAKMIAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYER 411
Query: 119 MHTNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
M + N+ VT ++ F+ E + MV + ++ +G + Y AL+E+
Sbjct: 412 MQELQCKPNV--VTYNLLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALIESFCGR 469
Query: 178 GLRERAARVLDE 189
G RA L E
Sbjct: 470 GNWRRAHATLRE 481
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L++M G + +FN +++ G E A + Y M++++C PN T ++ ++
Sbjct: 373 VLAKMIAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPNVVTYNLLMKLFN 432
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+D +++ + G+ P+V Y L+ + W A+ L EM
Sbjct: 433 KEKSMDMVLRIKKDMDAQGVEPNVNTYGALIESFCGRGNWRRAHATLREM 482
>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
Length = 1143
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL ++ A++ G+ + ++N +I+A + GR ++AI Y + + P+ +T
Sbjct: 840 AGLVEDADALIHMARGDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQT 899
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD--- 117
+ ++SV+ +G ++++ F+++KS+G P Y ++ YAKS ++ A L +
Sbjct: 900 YDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMK 959
Query: 118 -------EMHTNRISNIHQVTGQMIKGE 138
E+ N + + + GQ K E
Sbjct: 960 LRGLRPHEVSYNNLIDAYARAGQFAKAE 987
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 57/106 (53%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+Y+ + M G+ + S+N +I+A+ + G+F +A + VEM K C P+ T
Sbjct: 945 SGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAKAGCPPSSVT 1004
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
++S Y G +E++ + ++++ I P+V Y ++ ++++
Sbjct: 1005 FLLLISAYAHRGKCNEAENALERMQTAAIRPTVRHYNEVMLAFSRA 1050
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 62/118 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y E + + M + + S+ ++ + +FE A + +M+ RC +E
Sbjct: 430 GRYDEAVDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFSDMQMKRCPVDEVVY 489
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+V+S+Y AGL DE+++ FQE+ +L V + ++ V K+ ++++A +++E+
Sbjct: 490 TSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEEL 547
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/218 (18%), Positives = 94/218 (43%), Gaps = 1/218 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K+ S ++ G+ + +++ +I F + GR +A K + +++ P+E+
Sbjct: 875 AGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKV 934
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ Y +G+ + + + F+ +K G+ P + Y L+ YA++ ++ A LL EM
Sbjct: 935 YSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMA 994
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
VT ++ + E +++ +R YN ++ A L
Sbjct: 995 KAGCPP-SSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVRHYNEVMLAFSRARLP 1053
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+A + + G+ P++ ++ + M+E G
Sbjct: 1054 SQAMESYLKMERSGIQPDVVSSRTMIRILLEGSMFEEG 1091
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GLY E + + M+E + + +F+ + + G++ EA++ E+ + ++
Sbjct: 499 AGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGLNLDDTA 558
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +L Y AG V+ + + F+ + SGI +M Y +L++YA+ + +DA L ++
Sbjct: 559 WKTLLHCYVKAGNVERATKTFKTLVESGI-ADLMAYNDMLSLYAEFDMLEDAKLLFQQLK 617
Query: 121 TNRISNIHQVTGQMIK 136
++ I G M+K
Sbjct: 618 SSSIQPDQVWFGTMVK 633
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
ESG+A + ++N ++ + + E+A + +++ P++ ++ +YC A +V
Sbjct: 584 ESGIA-DLMAYNDMLSLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVA 642
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL------DEMHTNRISNIH 128
++E ++++ G P + +L+ Y ++NR ++A GLL DE IS I+
Sbjct: 643 AAEEVLRQMREKGFTPDHITQGILINAYGEANRIEEAAGLLEASAKEDESEAAAISRIY 701
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 59/126 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + +L M+++G +S +F +I A+ G+ EA A M+ P R
Sbjct: 980 AGQFAKAEQLLVEMAKAGCPPSSVTFLLLISAYAHRGKCNEAENALERMQTAAIRPTVRH 1039
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ + A L ++ E + +++ SGI P V+ ++ + + + +++ L +
Sbjct: 1040 YNEVMLAFSRARLPSQAMESYLKMERSGIQPDVVSSRTMIRILLEGSMFEEGLSLYKKTE 1099
Query: 121 TNRISN 126
+S+
Sbjct: 1100 AKLVSD 1105
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/236 (18%), Positives = 84/236 (35%), Gaps = 31/236 (13%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK--------- 51
G + + SRM + G + +I A+ + GR+E K E+ +
Sbjct: 740 AGQVPPAEMLHSRMQDKGFDVEDSTLGHLIAAYGKAGRYEVLTKLKPELPRNNFVYSSMV 799
Query: 52 ---VRCDPNERT------------------LEAVLSVYCFAGLVDESKEQFQEIKSSGIL 90
+ C+ E+ + +L+ Y AGLV+++ + GI
Sbjct: 800 GALINCNQLEKAAGLVEKMRQIGLKCDSVLVSILLNAYSKAGLVEDADALIHMARGDGIP 859
Query: 91 PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150
++ Y ++ ++ R A + + Q MI F + E
Sbjct: 860 LDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMI-SVFAKSGRTRDAEK 918
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+F L G+ + Y+ ++ G+ E AA + + RGL P +N L+
Sbjct: 919 MFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLI 974
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 11/156 (7%)
Query: 45 AYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYA 104
A+ EM + DP+E ++ Y A + DE ++ + S GI+PS + Y +L
Sbjct: 298 AFQEMLDQKLDPDEVAFSTMILNYANAEMFDEMLTMYEAMMSRGIVPSSVTYTTMLIHLN 357
Query: 105 KSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEG 159
K+ R DA L +++ + MI G F++ VF+ + G
Sbjct: 358 KAERLADAALLWEDLVEESVELSPLAYALMITIYRKLGRFEEALE------VFEAMLGAG 411
Query: 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
Y YN +L L LG + A V ++ L
Sbjct: 412 YYPDSLIYNMVLHMLGKLGRYDEAVDVFTAMQRQEL 447
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/180 (19%), Positives = 78/180 (43%), Gaps = 1/180 (0%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E V + ++ +I +R+ GRFEEA++ + M P+ VL + G D
Sbjct: 374 EESVELSPLAYALMITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYD 433
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
E+ + F ++ + S Y +L + K+++++ A + +M R + +V +
Sbjct: 434 EAVDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFSDMQMKRCP-VDEVVYTSV 492
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ + E +F ++N + ++ ++ + G A +V++E +GL
Sbjct: 493 ISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQVMEELLAKGL 552
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y E ++ + G+ + ++ ++ + + G E A K + K +
Sbjct: 534 AGKYNEAVQVMEELLAKGLNLDDTAWKTLLHCYVKAGNVERATKTF----KTLVESGIAD 589
Query: 61 LEA---VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
L A +LS+Y +++++K FQ++KSS I P + + ++ +Y +N A +L
Sbjct: 590 LMAYNDMLSLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVLR 649
Query: 118 EMHTNRISNIHQVTGQMIKG 137
+M + H G +I
Sbjct: 650 QMREKGFTPDHITQGILINA 669
>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Glycine max]
Length = 642
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 44/209 (21%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAY---VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
SFN+V+ Q G F A++ Y V + + PN T V+ C GLVD++ E F
Sbjct: 134 SFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVF 193
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+EI P Y L+ K R D+A LLDEM ++G F +
Sbjct: 194 REIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQ--------------VEGTFPN 239
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+ +N L+ AL G RAA+++D +G P
Sbjct: 240 ----------------------LVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVP---- 273
Query: 202 HNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
N++ ++ VH + G LN+M
Sbjct: 274 -NEVTYNALVHGLCLKGKLEKAVSLLNQM 301
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 5/221 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++L M G N +FN +I A + G A K M C PNE T A++
Sbjct: 223 EAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALV 282
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G ++++ ++ S+ +P+ + + L+ + R D +L +
Sbjct: 283 HGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHR 342
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V +I G E + ++ ++ +G G Y+AL++ L G + A
Sbjct: 343 GNEYVYSSLISG-LCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARG 401
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
L E +G P F ++ L+ G ++ AI VW
Sbjct: 402 FLSEMKNKGYLPNSFTYSSLMRGY----FEAGDSHKAILVW 438
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + G N ++++I + G+F +A++ + EM C PN A++ C
Sbjct: 332 VLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLC 391
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +DE++ E+K+ G LP+ Y L+ Y ++ A + EM N +
Sbjct: 392 REGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEV 451
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G D + V+ ++ G L + Y++++ L E+ ++ ++
Sbjct: 452 CYSILINGLCKD-GKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQ 510
Query: 190 ATKRG--LFPELFRHNKLV 206
+G + P++ +N L+
Sbjct: 511 MLCQGPVVQPDVITYNILL 529
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 17/214 (7%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
+ N+ +FN VI+A + G ++AI+ + E+ C P+ T ++ C +DE+
Sbjct: 166 IHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAV 225
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIHQVTGQ 133
E++ G P+++ + +L++ K A L+D M N ++ V G
Sbjct: 226 SLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGL 285
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+KG+ + + + + V +K G L+ G RVL R
Sbjct: 286 CLKGKLEKAVSL-LNQMVSNKCVPNDVTFG-----TLINGFVMQGRASDGTRVLVSLEAR 339
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGGAYT-AISVW 226
G R N+ V+S + + + G + A+ +W
Sbjct: 340 G-----HRGNEYVYSSLISGLCKEGKFNQAMELW 368
>gi|255660998|gb|ACU25668.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 376
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 6/207 (2%)
Query: 2 GLYKECQ-----AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GL KE ++L+ M +SG N+ +N +I +FE+AI+ + EM VRC P
Sbjct: 138 GLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTVRCSP 197
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
T +++ C + E+ + +E+ G+ PSV+ Y ML+ ++ + A L
Sbjct: 198 TIITYNTLINGLCKNEMFGEAYDLVKEMLEKGLNPSVITYSMLMKGLCLDHKVERALQLW 257
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+++ + Q+ +I G Q+ ++ +N + +N L+E +
Sbjct: 258 NQVISKGFKPDVQMHNILIHG-LCSVGKTQLALSLYJDMNRWKCAPNLVTHNTLMEGFYK 316
Query: 177 LGLRERAARVLDEATKRGLFPELFRHN 203
G A + + GL P++ +N
Sbjct: 317 DGDIRNALVIWARVLRNGLEPDIISYN 343
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/197 (18%), Positives = 90/197 (45%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + G ++ +++A+I + ++A+ +M K C PN +++
Sbjct: 116 VLEMAEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLV 175
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A +++ F+E+ + P+++ Y L+ K+ + +AY L+ EM ++
Sbjct: 176 GASKFEDAIRVFREMGTVRCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGLNPSVI 235
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++KG D + ++ +++++ +G+ ++ +N L+ L +G + A + +
Sbjct: 236 TYSMLMKGLCLDHKVERALQ-LWNQVISKGFKPDVQMHNILIHGLCSVGKTQLALSLYJD 294
Query: 190 ATKRGLFPELFRHNKLV 206
+ P L HN L+
Sbjct: 295 MNRWKCAPNLVTHNTLM 311
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 39/238 (16%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
K+C + M G R+ SFN ++ G+ +E I + M+K + T +
Sbjct: 42 KDCFELWEMMGNEG-NRSVSSFNIMMRGLFDKGKVDEVISIWELMKKSDFVEDSITYGIL 100
Query: 65 LSVYCFAGLVDES------KEQ-----------------------------FQEIKSSGI 89
+ +C G +++S EQ ++ SG
Sbjct: 101 VHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNDMIKSGC 160
Query: 90 LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVE 149
P+ Y L+ +++++DA + EM T R S +I G +E + +
Sbjct: 161 KPNAHVYNTLINGLVGASKFEDAIRVFREMGTVRCSPTIITYNTLINGLCKNEMFGEAYD 220
Query: 150 YVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEATKRGLFPELFRHNKLV 206
V + L +G + Y+ L++ L CL + ERA ++ ++ +G P++ HN L+
Sbjct: 221 LVKEMLE-KGLNPSVITYSMLMKGL-CLDHKVERALQLWNQVISKGFKPDVQMHNILI 276
>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 19/208 (9%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E ++ RM G++ FN +++ + + + + K + ME P+ +T
Sbjct: 214 AGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDKVFKLMENFGVKPDVQT 273
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+++ +C GL+DE+K +K + P VM Y +L+ Y++ R ++ L+ M
Sbjct: 274 FGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGYSRQGRPEEGEAFLNIMI 333
Query: 120 ----HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL---- 171
N I+ ++G + DD VF ++ M+ + L+
Sbjct: 334 DENLKPNVITYTTVISGYCSLAQMDDAMR------VFQEMRSRSVFPNMQTFRTLIWGFK 387
Query: 172 EALWCLGLRERAARVLDEATKRGLFPEL 199
EA W RA +L+ K G P+L
Sbjct: 388 EARWP----RRAEEILEYIRKAGFTPDL 411
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNER 59
G KE +A++ M E G + S+N +I+ + G+ EEA+K EM K V PN+R
Sbjct: 73 AGKMKEAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDR 132
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T ++ + ++++ ++++G+ P V+ Y L ++AK + DA ++ EM
Sbjct: 133 TFNMLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEM 192
Query: 120 HTNRISNIHQVTGQMIKG 137
+ + G +I G
Sbjct: 193 QNVYLRPNERTYGIVING 210
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 94/238 (39%), Gaps = 36/238 (15%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ + ++S M +GV + S+N + + F + G+ +A EM+ V PNERT V
Sbjct: 148 EKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVYLRPNERTYGIV 207
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS------------------ 106
++ Y AG +DES + +K GI P++ + L+ Y++S
Sbjct: 208 INGYIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDKVFKLMENFGV 267
Query: 107 -----------NRW------DDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVE 149
N W D+A +L M + ++KG + + + E
Sbjct: 268 KPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKG-YSRQGRPEEGE 326
Query: 150 YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW 207
+ + E + Y ++ L + A RV E R +FP + L+W
Sbjct: 327 AFLNIMIDENLKPNVITYTTVISGYCSLAQMDDAMRVFQEMRSRSVFPNMQTFRTLIW 384
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 78/196 (39%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ ++ L + G +++ ++ + GR E +ME+ P+
Sbjct: 4 GDHRQVRSTLKNLRRDGHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFF 63
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ YC AG + E++ E+K G Y L+ Y + ++A LL EM
Sbjct: 64 NTLLNGYCEAGKMKEAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAK 123
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ S + T M+ + + N + V + G G + YN L + LG
Sbjct: 124 DVNSKPNDRTFNMLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPW 183
Query: 182 RAARVLDEATKRGLFP 197
A V+ E L P
Sbjct: 184 DAENVITEMQNVYLRP 199
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G RN S+ +I F + G+ +EA++ + +M++ C P+ T +++ +C G
Sbjct: 251 MPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGK 310
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
E+ + F+E+ +GI P+V Y +L+ + K + D+ +L M + +
Sbjct: 311 ETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNA 370
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G + + V D + R YN L+ +RA +L++ +
Sbjct: 371 LIDG-YCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYEN 429
Query: 194 GLFPELFRHNKLV 206
L P L +N L+
Sbjct: 430 KLSPNLVTYNTLI 442
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 1/197 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +M E G + ++ ++ AF + G+ EA+K + EM + +PN T
Sbjct: 274 GKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTY 333
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G +DE E + G++ SV+ + L+ Y K +DA +LD M
Sbjct: 334 TVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKL 393
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N++ + ++I G F + + + +K+ + YN L+ L + +
Sbjct: 394 NKVCPNSRTYNELICG-FCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVD 452
Query: 182 RAARVLDEATKRGLFPE 198
A R+ K G P+
Sbjct: 453 SAWRLHHLMIKDGFVPD 469
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 92/240 (38%), Gaps = 49/240 (20%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEA---------------IKAYV- 47
+ + + RM G NS +FN +++ R+ G+ E+A + Y
Sbjct: 521 FSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTI 580
Query: 48 -------------------EMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG 88
+M C PN T A + YC G + E++E +IK G
Sbjct: 581 LIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEG 640
Query: 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMV 148
IL Y +L+ Y + D A+G+L M Q ++K
Sbjct: 641 ILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLK------------ 688
Query: 149 EYVFDKLNCEGYGLGMRFYNALLE--ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+F+K N EG GL + N ++ +W + E + ++ ++G P + ++KL+
Sbjct: 689 HLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLI 748
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 26/225 (11%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G +S ++ ++I + + +A K + M + C NE + ++ +C G +DE+
Sbjct: 220 GFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEA 279
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVT----- 131
E F ++K G P V Y +L+A + + + +A +EM N I N++ T
Sbjct: 280 LELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDY 339
Query: 132 ----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
G+M +G +M+ + +K G + +NAL++ G+ E A VL
Sbjct: 340 FCKVGKMDEG-------MEMLSTMLEK----GLVSSVVPFNALIDGYCKRGMMEDAICVL 388
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
D + P +N+L+ + + LNKMYE
Sbjct: 389 DSMKLNKVCPNSRTYNELICGFCRKKSMDRAM-----ALLNKMYE 428
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 86/203 (42%), Gaps = 11/203 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L++M E+ ++ N ++N +I + + A + + M K P++RT A +
Sbjct: 421 ALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCL 480
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNR 123
C G V+++ + F+ +K + Y L+ Y K+ ++ DA+ L M N
Sbjct: 481 CKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNS 540
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I+ + G +G+ +D + V FD + Y L+E + +RA
Sbjct: 541 ITFNVLLDGLRKEGKVEDAMSLVDVMGKFDA------KPTVHTYTILIEEILRESDFDRA 594
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
LD+ G P + + +
Sbjct: 595 NMFLDQMISSGCQPNVVTYTAFI 617
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 82/208 (39%), Gaps = 1/208 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ ++ +L M + V NS ++N +I F + + A+ +M + + PN T
Sbjct: 379 GMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTY 438
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C A +VD + + G +P +C + K + + A+ + + +
Sbjct: 439 NTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKE 498
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G E + +F ++ EG +N LL+ L G E
Sbjct: 499 KHAEANEFLYTALIDGYCKAEK-FSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVE 557
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
A ++D K P + + L+ +
Sbjct: 558 DAMSLVDVMGKFDAKPTVHTYTILIEEI 585
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 16/220 (7%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +L+ ++ + + S+N + + G +E + +M +PN + ++
Sbjct: 138 EARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMV 197
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT---- 121
+ +C G V +K F + G Y L+ Y K + DAY + + M
Sbjct: 198 NAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCL 257
Query: 122 -NRISNIHQVTGQMIKGEFDD--ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
N +S + + G G+ D+ E +QM E +G + Y L+ A +G
Sbjct: 258 RNEVSYTNLIHGFCEVGKIDEALELFFQMKE--------DGCFPDVPTYTVLVAAFCEVG 309
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV-WSVDVHRMWEG 217
A + +E + G+ P ++ + L+ + V +M EG
Sbjct: 310 KETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEG 349
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 52/252 (20%), Positives = 93/252 (36%), Gaps = 22/252 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + + E N + A+I+ + + +F +A + M C PN T
Sbjct: 484 GKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITF 543
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L G V+++ + P+V Y +L+ + + +D A LD+M +
Sbjct: 544 NVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMIS 603
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + VT + + E + K+ EG L Y+ L+ A C+G +
Sbjct: 604 SGCQP-NVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLD 662
Query: 182 RAARVLDEATKRGLFPE------LFRH---------------NKLVWSVDVHRMWEGGAY 220
A VL G P L +H N SVD +W+ +
Sbjct: 663 SAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADF 722
Query: 221 TAISVWLNKMYE 232
I++ KM E
Sbjct: 723 EIITMLFEKMVE 734
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 5/188 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFR--QGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
I + ++ G+ + +S N ++ + FE + +M + C PN T ++
Sbjct: 691 IFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKG 750
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE-MHTNRISN 126
C + + F +K SGI PS + LL+ K ++A LLD M N +++
Sbjct: 751 LCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAH 810
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ + ++ G F ++ N + E +F L GY + LL+ L G + +++
Sbjct: 811 L-ESYKLLVCGLF-EQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECSQL 868
Query: 187 LDEATKRG 194
D K G
Sbjct: 869 RDIMEKTG 876
>gi|255661198|gb|ACU25768.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 426
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV ++ S+ A++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVMPDTVSYTALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 DI 215
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWSMRKLGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L +++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAILFEKLRS 282
Query: 122 NRISNIHQVTGQ 133
+ I I QV Q
Sbjct: 283 SGI-EIDQVLYQ 293
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 57/119 (47%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNAITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S++ G +D + F++++SSGI + Y ++ Y ++ A LL E+ T
Sbjct: 259 TIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELKT 317
>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
Length = 506
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 11/202 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM ++GV N ++ +++ F G+ EAIK +M +PN T + + C G
Sbjct: 258 RMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNG 317
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
E+++ F + G+ P + Y LL YA + +GL D M + + H V
Sbjct: 318 RCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFN 377
Query: 133 QMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+I +G+ D+ VF K+ +G YN L+ + E A +
Sbjct: 378 TLIYASAKQGKVDE------AMLVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALALF 431
Query: 188 DEATKRGLFPELFRHNKLVWSV 209
E G+ P +N ++ +
Sbjct: 432 QEMVSNGVSPNFITYNIMLQGL 453
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G N S++ V + +GG ++A Y EM R PN T ++++ C +D++
Sbjct: 193 GCLPNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKA 252
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
E + +G+ P+ Y L+ + S + +A L++M +N +
Sbjct: 253 MEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGV 299
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 86/201 (42%), Gaps = 7/201 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNERTLEAVLSV 67
+L M+E G N S +++ R +EA++ M + C PN + V
Sbjct: 148 VLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDG 207
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
G D++ ++E+ ILP+V+ Y ++A K D A + D M N ++
Sbjct: 208 LLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPN 267
Query: 128 HQVTGQMIKGEFDDESNWQMVEYV--FDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
++ G S+ Q+ E + +K+ G + Y++ ++ L G A +
Sbjct: 268 CFTYTSLVHGFC---SSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARK 324
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ KRGL P++ ++ L+
Sbjct: 325 IFYSMVKRGLKPDITTYSSLL 345
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 35/173 (20%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E L +M +GV N ++++ ++ + GR EA K + M K P+ T
Sbjct: 282 GQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTY 341
Query: 62 EAVLSVYCFAGL-----------------------------------VDESKEQFQEIKS 86
++L Y G VDE+ F +++
Sbjct: 342 SSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRH 401
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF 139
G+ P+ + Y L+ Y K R ++A L EM +N +S M++G F
Sbjct: 402 QGLKPNCVTYNTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLF 454
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M +S + + FN +I A + G+ +EA+ + +M PN T
Sbjct: 352 GALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTY 411
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+++ YC ++ + FQE+ S+G+ P+ + Y ++L ++ R A
Sbjct: 412 NTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTGTA 462
>gi|413936859|gb|AFW71410.1| hypothetical protein ZEAMMB73_528560 [Zea mays]
Length = 671
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L ++ VA ++ ++N V++ ++E+A + EM + C PNE T + +C
Sbjct: 204 LRLIASMPVAPDTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQ 263
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--HTNRISNIH 128
GL+D + E +++ G P V+ Y L+ +++ R D+A LL+ M N +
Sbjct: 264 NGLLDRAVELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCRPNTVCYNA 323
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ G I G W+ V + ++ + ++ L+ +L L E A VL+
Sbjct: 324 ALKGLCIAGR------WEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLE 377
Query: 189 EATKRGLFPELFRHNKLV 206
+ K G P++ +N ++
Sbjct: 378 QMQKYGYMPDVVSYNTII 395
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N+ +NA ++ GR+EE + EM + C PN+ T +++ C LV+ + E
Sbjct: 317 NTVCYNAALKGLCIAGRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVL 376
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++++ G +P V+ Y +++ ++ R DDA LL M
Sbjct: 377 EQMQKYGYMPDVVSYNTIISCFSDQARADDALKLLKSM 414
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+NA ++ R+++A + +M C PNE T ++S C GLV+ + + ++++
Sbjct: 524 SYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAIDVYEQM 583
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
GI P + Y L+ Y++ R DDA L M
Sbjct: 584 PKYGITPDIFTYNALINGYSEQGRLDDALKFLSTM 618
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 39/197 (19%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++++M + N +FN +I++ Q G+ ++AI+ + M K RC P+ T ++++ +
Sbjct: 442 LVAKMLKKDCRINEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFS 501
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL + + + F+ + + Y L + RWDDA L+ +M
Sbjct: 502 EQGLDEMAFDLFRSMPCRA---DIFSYNATLKGLCMAARWDDAGELIADM---------- 548
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT + E +N L+ +L GL RA V ++
Sbjct: 549 VTEDCLPNEVT--------------------------FNILISSLCQKGLVNRAIDVYEQ 582
Query: 190 ATKRGLFPELFRHNKLV 206
K G+ P++F +N L+
Sbjct: 583 MPKYGITPDIFTYNALI 599
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 85/215 (39%), Gaps = 13/215 (6%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ + ++ M + N +F I AF Q G + A++ +M K C P+
Sbjct: 232 WEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVIIYST 291
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ + G VDE+ + + + P+ +CY L + RW++ L+ EM
Sbjct: 292 LVNGFSEHGRVDEA---LKLLNTMLCRPNTVCYNAALKGLCIAGRWEEVGELIAEMVRKD 348
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEY---VFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I + ++VEY V +++ GY + YN ++ C +
Sbjct: 349 CPPNDATFSTLINSLCQN----RLVEYAVEVLEQMQKYGYMPDVVSYNTIIS---CFSDQ 401
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
RA L P+ N ++ + + W
Sbjct: 402 ARADDALKLLKSMLCKPDTISFNAVLKCLCKAKRW 436
>gi|255661174|gb|ACU25756.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 426
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV ++ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPDTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 28/234 (11%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE ++ +M + G+ +FN +I + G F++A K +M P RT
Sbjct: 445 AGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVART 504
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A + VYC AG V E+++ ++K G+ P Y L+ Y K A+ +L M
Sbjct: 505 YNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMF 564
Query: 121 TNRISNIHQVTGQMIKGEFDDE--------------SN---------WQMVEY-----VF 152
H +IK FD SN W+M+E+ +F
Sbjct: 565 DADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELF 624
Query: 153 DKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+++ G + Y L+ + + A ++LD+ K G+ P N ++
Sbjct: 625 EEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVI 678
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 1/183 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + + ++E GV+ N ++ +I+ + + G+ +EA + +M C PN T A+
Sbjct: 379 EEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNAL 438
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ C AG + E+ F ++ G+ P+V + +L+ K +DDA+ L +M ++
Sbjct: 439 IHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGE 498
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + I+ + Q E + ++ EG Y +L++A LGL A
Sbjct: 499 KPVARTYNAFIE-VYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAF 557
Query: 185 RVL 187
VL
Sbjct: 558 DVL 560
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 91/199 (45%), Gaps = 9/199 (4%)
Query: 10 ILSRMSESGVARNS-DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
I +MS+ + + S +N ++ + G +E + Y EM + + T +++VY
Sbjct: 143 ICRKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVY 202
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNI 127
C G V E+K+ ++ +G+ P + Y +S D A+ + +EM + N +S
Sbjct: 203 CKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRNEVSYN 262
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ G G D+ + +F ++ + + Y AL++ L C +A +L
Sbjct: 263 QLIHGLCEAGRIDEAVS------LFVRMKDDCCYPNVYTYTALIKGL-CRKNVHKAMGLL 315
Query: 188 DEATKRGLFPELFRHNKLV 206
DE +R L P+L +N L+
Sbjct: 316 DEMLERNLVPDLITYNSLI 334
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 41/222 (18%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L M E + + ++N++I + G + A + M++ P++RT +
Sbjct: 313 GLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFL 372
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C + V+E++ F + G+ +V+ Y +L+ Y K + D+A L ++M +
Sbjct: 373 CKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSK------ 426
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
N Y F NAL+ L G + A + D
Sbjct: 427 ---------------NCSPNAYTF---------------NALIHGLCSAGNLKEALSLFD 456
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+ K GL P ++ N L+ RM + G + L KM
Sbjct: 457 QMVKMGLKPTVYTFNILIG-----RMLKQGDFDDAHKCLQKM 493
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Query: 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM 98
F+ I+ + EMEK C P+ + E ++S C + + + +++ GI PS M +
Sbjct: 617 FDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNA 676
Query: 99 LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158
+++ K ++ +A ++++M + S + +I G + +E + VF KL
Sbjct: 677 VISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLY-EEGETERGNSVFKKLRGC 735
Query: 159 GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
GY + L++ + GL E +++ +E K G
Sbjct: 736 GYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNG 771
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 8/198 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + + M E V+ + +FN +I + + G +EA + +M + P+ T
Sbjct: 171 GLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTS 230
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ + YC + VD + F+E+ + + + Y L+ ++ R D+A L M
Sbjct: 231 TSFILGYCRSKDVDSAFRVFEEMPNR----NEVSYNQLIHGLCEAGRIDEAVSLFVRMKD 286
Query: 122 NRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ N++ T +IKG N + D++ + YN+L+ G
Sbjct: 287 DCCYPNVYTYTA-LIKGLC--RKNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHL 343
Query: 181 ERAARVLDEATKRGLFPE 198
+ A R+L +RGL P+
Sbjct: 344 DSAYRLLSLMKERGLVPD 361
>gi|255661150|gb|ACU25744.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
gi|255661152|gb|ACU25745.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 426
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV ++ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMKTAGVTPDTASYSTLLTMYVENKKFLEALSIFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
Length = 748
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 9/228 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + I+ M ++G N +FN+++E + G EEA M + +PN
Sbjct: 452 GRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIY 511
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
++ YC G +D++ F+++ G+ P+ + Y ++L ++ R A + EM
Sbjct: 512 GTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIE 571
Query: 120 --HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
T I V G + + DE+N + +KL + +N ++ A+ +
Sbjct: 572 SGTTVSIQTYGVVLGGLCRNNCTDEANM-----LLEKLFAMNVKFDIITFNIVISAMLKV 626
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
G R+ A + + GL P + +N ++ ++ +E ISV
Sbjct: 627 GRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISV 674
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 93/202 (46%), Gaps = 11/202 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M E V+ + ++N++I+ + ++ + +M PN +T +++ Y AG
Sbjct: 182 KMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAG 241
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNI 127
+ ES F+E+ SSG++P V+ + + NR +A + D M N IS
Sbjct: 242 MWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYS 301
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ G +G F + ++ +V + K G RF+N L+ A G+ ++A +
Sbjct: 302 TLLHGYAAEGCFANMNS--LVNLMVSK----GIVPNHRFFNILINAYARCGMMDKAMLIF 355
Query: 188 DEATKRGLFPELFRHNKLVWSV 209
++ +G+ P+ ++ S+
Sbjct: 356 EDMQNKGMIPDTVTFATVISSL 377
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/202 (18%), Positives = 87/202 (43%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + I M G N S++ ++ + G F M PN R +
Sbjct: 279 KEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNIL 338
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
++ Y G++D++ F+++++ G++P + + +++ + R DDA + M +
Sbjct: 339 INAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGV 398
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
V +I+G + + E + + +N + G++++++++ L+ G
Sbjct: 399 PPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGK 458
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++D + G P + N L+
Sbjct: 459 DIMDLMVQTGQRPNVVTFNSLM 480
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 44/233 (18%), Positives = 95/233 (40%), Gaps = 9/233 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + I M G+ ++ +F VI + + GR ++A+ + M + P+E
Sbjct: 346 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 405
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
++ C G + ++KE E+ + I P V + ++ K R + ++D M
Sbjct: 406 RCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMV 465
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
T + N+ VT + + N + + D + G Y L++ G
Sbjct: 466 QTGQRPNV--VTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGR 523
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ A V + +G+ P +++++ +H +++ TA ++M E
Sbjct: 524 IDDALTVFRDMLHKGVKP-----TSVLYNIILHGLFQARRTTAAKKMFHEMIE 571
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/206 (18%), Positives = 87/206 (42%), Gaps = 6/206 (2%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I+ +R+ R E A+ + + + P+ + ++ + G VD++ E F ++
Sbjct: 124 TYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKM 183
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ P V+ Y L+ K+ + +L++M I ++ +I G +
Sbjct: 184 IEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYG-YSTAGM 242
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
W+ VF +++ G + N+ + AL + A + D +G P N
Sbjct: 243 WKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKP-----NI 297
Query: 205 LVWSVDVHRMWEGGAYTAISVWLNKM 230
+ +S +H G + ++ +N M
Sbjct: 298 ISYSTLLHGYAAEGCFANMNSLVNLM 323
>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 819
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 92/208 (44%), Gaps = 3/208 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNE 58
G Y + M + +A ++ + N VI + G+ +A+ M ++V+C P+
Sbjct: 271 GFQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDV 330
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T +++ Y G V+ K F + + G+ P+++ Y LL YA +A+G+
Sbjct: 331 VTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKL 390
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ N + V+ + + + + VF+++ YNAL++A G
Sbjct: 391 LKQNGLRP-DVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAG 449
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
+ + A +L E K G+ P++ + L+
Sbjct: 450 MFKEAISLLHEMEKDGIPPDVVSISTLL 477
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + C+A+ M GV N S+NA++ A+ G EA + +++ P+ +
Sbjct: 344 GQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSY 403
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L+ Y + ++++E F E++ + P+ + Y L+ Y + + +A LL EM
Sbjct: 404 TTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEK 463
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I V+ + ++ V + G L + YN+ + + G E
Sbjct: 464 DGIPP-DVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYE 522
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A ++ + P+ +N L+
Sbjct: 523 KALKLYATMMASNVNPDAVTYNILI 547
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 58/123 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y++ + + M S V ++ ++N +I + G++ E++K + +M +R +
Sbjct: 519 GDYEKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVY 578
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ Y + E++ F +K+SG P V+ Y ++ Y W + L EM
Sbjct: 579 SSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEG 638
Query: 122 NRI 124
N I
Sbjct: 639 NAI 641
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 52/119 (43%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y E M + + + ++++I ++ + + EA ++ M+ C P+ T
Sbjct: 554 GKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTY 613
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ Y G + F+E++ + ILP + L+ K N++ L+ MH
Sbjct: 614 TAMIQAYTDHGSWTSVWDLFKEMEGNAILPDAIICSSLMEALNKGNQYGRVLQLMKFMH 672
>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12775, mitochondrial-like [Glycine max]
Length = 750
Score = 63.5 bits (153), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 97/206 (47%), Gaps = 3/206 (1%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + +L+ M+++ + + ++ +++ + + A + M ++ PN + +
Sbjct: 523 KEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIM 582
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ C VDE+ F+E+K + P+++ Y L+ K++ + A LL EM + I
Sbjct: 583 IDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGI 642
Query: 125 S-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+++ T ++ + + +F +L +GY L ++ Y A++ L GL + A
Sbjct: 643 QPDVYSYT--ILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEA 700
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSV 209
+ + +G P+ + ++W++
Sbjct: 701 LDLQXKMEDKGCMPDAVTFDIIIWAL 726
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 4/185 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE ++L+ M + + +FN +I+A + G+ + A M K P+ T
Sbjct: 252 GHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTY 311
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
+++ Y F V +K F + SG+ P+V Y ++ K D+A L +EM +
Sbjct: 312 NSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKY 371
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N I +I T +I G + + + + K+ +G + Y LL+AL C G R
Sbjct: 372 KNMIPDIVTYT-SLIDGLCKNHHLERAIA-LCKKMKEQGIQPDVYSYTILLDAL-CKGGR 428
Query: 181 ERAAR 185
A+
Sbjct: 429 LENAK 433
Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats.
Identities = 42/205 (20%), Positives = 80/205 (39%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K +L ++ V + +N +I + + +A Y EM PN T
Sbjct: 182 GETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTY 241
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ +C G + E+ E+K I P V + L+ K + A +L M
Sbjct: 242 NALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMK 301
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I +I G F + + +YVF + G +R Y +++ L + +
Sbjct: 302 ACIKPDVVTYNSLIDGYF-FLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVD 360
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + +E + + P++ + L+
Sbjct: 361 EAMSLFEEMKYKNMIPDIVTYTSLI 385
Score = 41.6 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 54/111 (48%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L M E G+ + S+ +++ + GR E A + + + N + A+++
Sbjct: 632 ALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINEL 691
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C AGL DE+ + +++ G +P + + +++ + + D A +L EM
Sbjct: 692 CKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEM 742
>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g19290-like [Cucumis
sativus]
Length = 885
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 11/211 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y E +L + E G+ + +FN++I A+ G E A AY M K P+ T
Sbjct: 445 AGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSST 504
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L G +DE+ ++ G + M + +LL Y + + A L +EM
Sbjct: 505 CSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMK 564
Query: 121 -----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
+ ++ + G I G D + VF + +G+ YN+L+
Sbjct: 565 GRGVFPDAVAFAAFINGLCISGLMTDAYD------VFSDMLRKGFVPNNFVYNSLIGGFC 618
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G A +++ E KRGL P++F N ++
Sbjct: 619 KVGKLNEALKLVREMNKRGLLPDIFTVNMII 649
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 87/202 (43%), Gaps = 7/202 (3%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+A+L M + + S+N VI A G+ A+ M + C P+ T ++
Sbjct: 277 EALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDA 336
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+C G V+ +++ F EI+ G+ + + Y ++++ Y K+ A L +EM T I
Sbjct: 337 FCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPD 396
Query: 128 HQVTGQMIKGEF---DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
++ G + +E +++ L+ G + + L G + A
Sbjct: 397 GITFNTLVAGHYRYGKEEDGNRLLR----DLSVSGLLHDSSLCDVTVAGLCWAGRYDEAM 452
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++L+ ++G+ P + N ++
Sbjct: 453 KLLENLLEKGIPPSVVAFNSII 474
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 81/197 (41%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +S SG+ +S + + GR++EA+K + + P+ ++++ Y
Sbjct: 419 LLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYG 478
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AGL + + + + G+ PS LL + D+A+ L +M +
Sbjct: 479 NAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNM 538
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ G F + M E +++++ G + A + L GL A V +
Sbjct: 539 AFTVLLDGYFRIGA-VNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSD 597
Query: 190 ATKRGLFPELFRHNKLV 206
++G P F +N L+
Sbjct: 598 MLRKGFVPNNFVYNSLI 614
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 39/208 (18%), Positives = 84/208 (40%), Gaps = 1/208 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + M GV ++ +F A I G +A + +M + PN
Sbjct: 551 GAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVY 610
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C G ++E+ + +E+ G+LP + M++ K R A +M
Sbjct: 611 NSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCR 670
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+S +I G + + + + K++ G+ + YN + +
Sbjct: 671 MGLSPDIVTYNTLIDG-YCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKIN 729
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
RA +L+E G+ P +N ++ +V
Sbjct: 730 RAVMILEELISVGIVPNTVTYNTMINAV 757
>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
Length = 1152
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 7/183 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I F + G+ EEA + + +M + + ++ YC GL D++ E+
Sbjct: 312 TYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEM 371
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK-GEFDDES 143
++GI P+ Y + + R DDA LL M + + + + IK G+F + S
Sbjct: 372 LNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEAS 431
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+FD L + YN L++ L G E A R+ +E T + +FP++ +
Sbjct: 432 ------LLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYT 485
Query: 204 KLV 206
LV
Sbjct: 486 TLV 488
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +K + + M + + ++ +I + GR E+A + EM+K PN T
Sbjct: 601 GQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTH 660
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+L C AG +DE+ +++ GI P+ Y ML++ +W++ L EM
Sbjct: 661 NALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEM 718
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G+ + ++ VI + + G+F+ A Y EM + R P+ T ++ + AG ++++
Sbjct: 582 GLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQA 641
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ E+K G+ P+VM + LL K+ D+AY L +M
Sbjct: 642 FQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKM 683
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 5/188 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + + M +G+ + ++N I A GR ++A + M P+ +
Sbjct: 359 GLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM----AAPDVVSY 414
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y G E+ F ++++ I PS++ Y L+ +S + A L +EM T
Sbjct: 415 NTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTT 474
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I ++KG F N M V+D++ +G Y LG +
Sbjct: 475 QLIFPDVITYTTLVKG-FVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSD 533
Query: 182 RAARVLDE 189
+A R+ +E
Sbjct: 534 KAFRLHEE 541
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/208 (18%), Positives = 87/208 (41%), Gaps = 10/208 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M+ V S+N ++ + + G+F EA + ++ P+ T
Sbjct: 394 GRIDDARELLSSMAAPDVV----SYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTY 449
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C +G ++ ++ +E+ + I P V+ Y L+ + K+ A + DEM
Sbjct: 450 NTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLR 509
Query: 122 NRISNIHQVTGQMIKGEF---DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
I GE D + +++ E + + + + + YN ++ L +G
Sbjct: 510 KGIKPDGYAYTTRAVGELRLGDSDKAFRLHE---EMVATDHHAPDLTIYNVRIDGLCKVG 566
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
+A + + GL P+ + ++
Sbjct: 567 NLVKAIEFQRKIFRVGLVPDHVTYTTVI 594
>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 564
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 91/215 (42%), Gaps = 3/215 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +L +M+E GV N +F+A + A + G++ A+ M C PN +T
Sbjct: 161 GQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTY 220
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A + AG ++ E++ G+ P+V+ + ++ +W +A LL +M +
Sbjct: 221 TAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQEALNLLRDMPS 280
Query: 122 NRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ N+ T + D + W V +++ G + A ++A G
Sbjct: 281 MGVQPNMWSYTAAVTA--CGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAW 338
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
E A +LDE G+ P + + + + + W
Sbjct: 339 EMALALLDEMRDEGIPPTVRSFSTAISACGKGQQW 373
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 36/207 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ Q +L+ M E GVA N +FN+ I A GG+++EA+ +M + PN +
Sbjct: 231 GEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSY 290
Query: 62 EAVLSV--------------------------YCFAGLVDESKEQ---------FQEIKS 86
A ++ F +D + E++
Sbjct: 291 TAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRD 350
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
GI P+V + ++ K +W A LL EM +S ++V+ W+
Sbjct: 351 EGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSP-NEVSFNAAIDACGRAGQWR 409
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEA 173
+ DK++ G G YNA++ A
Sbjct: 410 AALSLLDKMSSAGVPRGTITYNAVIAA 436
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 92/223 (41%), Gaps = 11/223 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAI--------KAYVEMEKVR 53
G ++E +L M GVA + +F A + A +GG++E A+ + EM V
Sbjct: 83 GRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERAVALLDQRALRLLGEMAAVG 142
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
PN T + ++ AG + + ++ G+ P+ + ++ K+ +W A
Sbjct: 143 LSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPAL 202
Query: 114 GLLDEMH-TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
+L M N N+ T + W++ + + ++ +G + +N+ +
Sbjct: 203 TILRRMRAANCPPNVQTYTAAI--DACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAIS 260
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215
AL G + A +L + G+ P ++ + V + + W
Sbjct: 261 ALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRW 303
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 6/223 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M+ G++ N +F++ + A G++E A+ +M + PNE T A +S
Sbjct: 134 LLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSACG 193
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
AG + + ++++ P+V Y + K+ W A GLL EM ++ +
Sbjct: 194 KAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAP-NV 252
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T + WQ + + G M Y A + A RA V ++
Sbjct: 253 ITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQ 312
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
RG+ R +++ ++ + +GGA+ L++M +
Sbjct: 313 MRSRGI-----RGDEVSFTAAIDACAQGGAWEMALALLDEMRD 350
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ A+L M + G+ SF+ I A +G ++ A+ EME+V PNE +
Sbjct: 335 GGAWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVS 394
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A + AG + ++ S+G+ + Y ++A K W A +L EM
Sbjct: 395 FNAAIDACGRAGQWRAALSLLDKMSSAGVPRGTITYNAVIAACGKGKEWARAVSVLREM 453
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 96/244 (39%), Gaps = 17/244 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +KE + E GV + +++ ++ A + GR+EE + M P+
Sbjct: 48 GQWKEALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAF 107
Query: 62 EAVLSVYCFAG-------LVDESKEQ-FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
A ++ G L+D+ + E+ + G+ P+V + +A + +W+ A
Sbjct: 108 GAAVNACAKGGQWERAVALLDQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERAL 167
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
GLLD+M + ++ T W+ + ++ ++ Y A ++A
Sbjct: 168 GLLDQMAEEGVPP-NEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDA 226
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
G A +L E ++G+ P + N + ++ W+ LN + +M
Sbjct: 227 CGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQEA--------LNLLRDM 278
Query: 234 FMMG 237
MG
Sbjct: 279 PSMG 282
>gi|255661028|gb|ACU25683.1| pentatricopeptide repeat-containing protein [Citharexylum
montevidense]
Length = 376
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 1/195 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L+ M ESG N+ +NA+I +FE+AI+ + E+ C P T +++
Sbjct: 150 SVLNGMIESGCKPNTQVYNALINGLLGASKFEDAIRVFKELGTRHCSPTIVTYNTLINGL 209
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C E+ + +E+ G PSV+ Y +L+ + ++ + A L +++ +
Sbjct: 210 CKGERFAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQDHKVEMALQLWNQVISKGFKPDV 269
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
Q+ +I G E FD +N + YN L+E + G A +
Sbjct: 270 QMHNILIHGLCSVGKTEHASELYFD-MNHWNCAPNLVTYNTLMEGFYKGGDTRNALVIWA 328
Query: 189 EATKRGLFPELFRHN 203
+ GL P++ +N
Sbjct: 329 RILRNGLLPDIISYN 343
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 100/218 (45%), Gaps = 7/218 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + G A ++ +++A+I + G+ ++A+ M + C PN + A+++
Sbjct: 116 VLEIAKQEGGALDAFAYSAMISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLL 175
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A +++ F+E+ + P+++ Y L+ K R+ +AY L+ EM +
Sbjct: 176 GASKFEDAIRVFKELGTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWNPSVI 235
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+IKG D +M +++++ +G+ ++ +N L+ L +G E A+ + +
Sbjct: 236 TYSLLIKGLCQDHK-VEMALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTEHASELYFD 294
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGG-AYTAISVW 226
P L +N L + ++GG A+ +W
Sbjct: 295 MNHWNCAPNLVTYNTL-----MEGFYKGGDTRNALVIW 327
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 81/206 (39%), Gaps = 4/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K C + M G +RN SFN ++ G +E + M++ + T
Sbjct: 39 GRIKNCFDLWELMGREG-SRNVASFNTMMRGLFNNGEVDEVFSIWELMKESGFVEDSTTY 97
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G ++S + K G Y +++ K + D A +L+ M
Sbjct: 98 GILVHGFCKNGYNNKSLHVLEIAKQEGGALDAFAYSAMISGLCKMGKLDKAVSVLNGMIE 157
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
+ QV +I G S ++ VF +L + YN L+ L C G R
Sbjct: 158 SGCKPNTQVYNALINGLL-GASKFEDAIRVFKELGTRHCSPTIVTYNTLINGL-CKGERF 215
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A ++ E ++G P + ++ L+
Sbjct: 216 AEAYDLVKEMLEKGWNPSVITYSLLI 241
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 9/186 (4%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N ++E + GR + Y +M C PN T +L C A +E++ F+ +
Sbjct: 19 SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT----GQMIKGEFD 140
+ G P+V Y +L+A + + D+A LL+EM I HQ G ++ G
Sbjct: 79 AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEM----IDGGHQPNVVTYGSLLSGLCK 134
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
+ V+ +F ++ G YN L++ G A R+ +E ++G P +F
Sbjct: 135 MGKLKEAVD-LFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVF 193
Query: 201 RHNKLV 206
+N L+
Sbjct: 194 TYNSLL 199
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 8/209 (3%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G N+ ++ ++ + Q RFEEA + M C PN + +++ C
Sbjct: 43 MLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQK 102
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
VDE+ E E+ G P+V+ Y LL+ K + +A L M V
Sbjct: 103 VDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G F + + +F+++ +G + YN+LL G R + + ++
Sbjct: 163 LIDG-FSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQ 221
Query: 194 GLFPELFRHNKLVWS-------VDVHRMW 215
G P +F N L+ V+ HR++
Sbjct: 222 GCVPNIFTFNNLLDGFCKMGDMVEAHRLF 250
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + SRM G + +N +I+ F + G EA + + EM + C P T
Sbjct: 136 GKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTY 195
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++LS + G + F+++ G +P++ + LL + K +A+ L EM +
Sbjct: 196 NSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRS 255
Query: 122 -----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ +S + G KG+ E+ + E + G G + YN L++
Sbjct: 256 LGCPPDVVSYNTLIRGMCSKGK-PHEAQRLLREMIR-----SGVGPDIVSYNILIDGYSK 309
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A ++ E K GL P+ F ++ ++
Sbjct: 310 SGALDHAIKLFYEIPKSGLEPDAFSYSTII 339
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 90/203 (44%), Gaps = 1/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++E +++ M+ G + N S++ +I +G + +EA + EM PN T +
Sbjct: 68 FEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGS 127
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+LS C G + E+ + F + G P + Y +L+ ++K +AY L +EM
Sbjct: 128 LLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKG 187
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
++ G F + + V+ +F + +G + +N LL+ +G A
Sbjct: 188 CIPTVFTYNSLLSG-FSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEA 246
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
R+ E G P++ +N L+
Sbjct: 247 HRLFLEMRSLGCPPDVVSYNTLI 269
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E Q +L M SGV + S+N +I+ + + G + AIK + E+ K +P+ +
Sbjct: 276 GKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSY 335
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ C AG V + F+++ ++G P L+ + R ++ L M
Sbjct: 336 STIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAM 393
>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 642
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 103/232 (44%), Gaps = 36/232 (15%)
Query: 2 GLYKECQAILSRMSESG-VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +++ + + M G ++ +++A+I ++ + GR + AI+ + EM+ P E+
Sbjct: 211 GQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKI 270
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L +Y G V+++ + F+E+K +G P+V Y L+ K+ R ++AY L M
Sbjct: 271 YTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNML 330
Query: 121 TNRIS-------NIHQVTGQ----------------------------MIKGEFDDESNW 145
T+ ++ N+ + G+ +IK F+ ++
Sbjct: 331 TDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPV 390
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
V FDK+ +G Y+ L++ E+A +L+E ++G P
Sbjct: 391 SEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPP 442
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 8/211 (3%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
S ++N+VI Q G+ E+ + Y EM + C P+ T A++S Y G D +
Sbjct: 196 TSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRL 255
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140
F E+K + + P+ Y LL +Y K + + A L +EM S ++IKG
Sbjct: 256 FDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKG-LG 314
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
+ ++ + +G + F N L+ L +G E V +E P +
Sbjct: 315 KAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVV 374
Query: 201 RHNKLVWSVDVHRMWEGGAYTA-ISVWLNKM 230
+N ++ + ++E A + +S W +KM
Sbjct: 375 SYNTVIKA-----LFESKAPVSEVSSWFDKM 400
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 2/180 (1%)
Query: 25 SFNAVIEA-FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE 83
S+N VI+A F E + +M+ P+E T ++ YC V+++ +E
Sbjct: 375 SYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEE 434
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143
+ G P YC L+ K+ R++ A L E+ N + +V MIK F
Sbjct: 435 MDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIK-HFGKCG 493
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+F+++ +G G + YNAL+ + G+ A +L + + G ++ HN
Sbjct: 494 KLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHN 553
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 12/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G ++ ++I A + R+E A + + E+++ + + R ++ +
Sbjct: 431 LLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFG 490
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS---N 126
G + E+ + F E+K+ G P V Y L++ K+ ++A LL +M N + N
Sbjct: 491 KCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADIN 550
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
H + ++ G + +E +F+ + G YN LL G+ E AAR+
Sbjct: 551 SHNI---ILNGFARTGVPRRAIE-MFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARL 606
Query: 187 LDEATKRGLFPELFRHNKLVWS 208
+ E +G F ++ + +S
Sbjct: 607 MREMKDKG-----FEYDAITYS 623
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ E ++L +M E+G + +S N ++ F + G AI+ + M+ P+ T
Sbjct: 527 AGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVT 586
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL-AVYAKSNRWDDAYGL 115
+L + AG+ +E+ +E+K G + Y +L AV + DD L
Sbjct: 587 YNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSILDAVGNMDHEKDDVSSL 642
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + + M G + ++NA++ + G EA +ME+ C + +
Sbjct: 493 GKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSH 552
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L+ + G+ + E F+ +K GI P + Y LL +A + +++A L+ EM
Sbjct: 553 NIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREM 610
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 41/218 (18%), Positives = 91/218 (41%), Gaps = 9/218 (4%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +M GV+ + +++ +I+ + + R E+A+ EM++ P +++
Sbjct: 392 EVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI 451
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN--- 122
+ A + + E F+E+K + S Y +++ + K + +A L +EM
Sbjct: 452 NALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSG 511
Query: 123 -RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + M+K +E+N + K+ G + +N +L G+
Sbjct: 512 PDVYAYNALMSGMVKAGMVNEANS-----LLRKMEENGCTADINSHNIILNGFARTGVPR 566
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
RA + + G+ P+ +N L+ M+E A
Sbjct: 567 RAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAA 604
>gi|410110103|gb|AFV61131.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
alba]
Length = 419
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++ M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 100 LFREARSLIGEMKTAGVMPNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 159
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 160 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 219
Query: 123 RI 124
I
Sbjct: 220 NI 221
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 62/118 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + +++ P+
Sbjct: 29 GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAIAIFSRLKRSGFTPDLVAY 88
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 89 NAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSYSTLLTMYVENKKFLEALSVFSEM 146
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 169 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 228
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 229 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 288
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 289 SGVE-IDQILFQ 299
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 205 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 264
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 265 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 324
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 325 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 375
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 376 KYXNVVEVFDKMRGLGYFPD 395
>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1429
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 93/203 (45%), Gaps = 28/203 (13%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ + SG+ + ++N +I A + EEA+K + +ME C P+ T A++SVY
Sbjct: 269 LLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYG 328
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++++ F+E++S G P + Y LL +A+ D + +
Sbjct: 329 RCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVD---------------KVKE 373
Query: 130 VTGQMIK-GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ +M++ G DE + + +++ K +GL ++ Y + + + R D
Sbjct: 374 ICNEMVQMGFIRDEMTYNTIIHMYGKQG--QHGLALQLYRDM----------KLSGRTPD 421
Query: 189 EATKRGLFPELFRHNKLVWSVDV 211
T L L + NK+V + +V
Sbjct: 422 AITYTVLIDSLGKANKMVEAANV 444
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 95/207 (45%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y++ +A+ + M G + DS N +++A GR EE E++ + ++ +
Sbjct: 783 SGCYEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSS 842
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +L + + E+K+ +Q +K++G P++ Y +++ + K R D ++ EM
Sbjct: 843 ILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEME 902
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ M++ + +++ ++ ++ +G YN L+ ++C R
Sbjct: 903 EAGFRPDLSIWNSMLR-LYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLI-VMYCRDHR 960
Query: 181 -ERAARVLDEATKRGLFPELFRHNKLV 206
E ++ E + GL P+L + L+
Sbjct: 961 PEEGCSLMHEMRRIGLEPKLDTYKSLI 987
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 87/198 (43%), Gaps = 11/198 (5%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74
+ES V +NA++ + + GRF + M + C+P+ + +++ AG +
Sbjct: 202 AESTVDNTVQVYNAMMGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAM 261
Query: 75 DE--SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ E E++ SG+ P ++ Y L++ ++ + ++A + D+M +
Sbjct: 262 TPNVAIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYN 321
Query: 133 QMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
MI + F ++ E +F +L +GY YN+LL A G ++ + +
Sbjct: 322 AMISVYGRCGFSGKA-----EQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICN 376
Query: 189 EATKRGLFPELFRHNKLV 206
E + G + +N ++
Sbjct: 377 EMVQMGFIRDEMTYNTII 394
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + +LS M ++GV + + ++ ++ G+ +EA K ++++ +
Sbjct: 1028 SGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLSTLP 1087
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+V+ Y ++ E+K G+ P + + + S DA LL +
Sbjct: 1088 YSSVIDAYLKNKDYSVGIQKLVEMKKEGLEPDHRIWTCFIRAASLSEHTHDAILLLQALQ 1147
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + ++I D S V++ + L F NAL + LW LR
Sbjct: 1148 DSGFD----LPSRLITERSD--SLVLEVDHCLEMLETMEDNAAFNFVNALEDLLWAFELR 1201
Query: 181 ERAARVLDEATKRGLF-PELFRHNKLVWSVDVHRMWEGGAYTA 222
A+ V A KR ++ ++FR + W D ++ G A A
Sbjct: 1202 ATASWVFRLAVKRSIYCHDVFRVAEQDWGADFRKLSGGAALDA 1244
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/195 (18%), Positives = 85/195 (43%), Gaps = 1/195 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +A+++ M E+G + +N+++ + F + ++ Y +++ P+E T
Sbjct: 888 GKRVRDVEAMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDT 947
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ +YC +E E++ G+ P + Y L+A + K DA L +E+
Sbjct: 948 YNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEEL- 1006
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ S + + ++ + + N E + + G + + L+ + G
Sbjct: 1007 LSKGSKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQP 1066
Query: 181 ERAARVLDEATKRGL 195
+ A +VL + GL
Sbjct: 1067 QEAEKVLTNLKEMGL 1081
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 107/254 (42%), Gaps = 32/254 (12%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+++ ++++ + + + +NA+I+A+ G +E+A + M + P ++
Sbjct: 750 LWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGCYEQARAVFNTMMRDGPSPTVDSIN 809
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY--------- 113
+L G ++E QEI+ G S ++L +A+ + +A
Sbjct: 810 GLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLILDAFARVSNIAEAKKIYQGMKAA 869
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
G MH RI + G + KG+ + VE + ++ G+ + +N++L
Sbjct: 870 GYFPTMHLYRI-----MIGLLCKGK-----RVRDVEAMVTEMEEAGFRPDLSIWNSMLRL 919
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV--WSVDVHRMWEGGAYTAISVWLNKMY 231
+ + ++ + GL P+ +N L+ + D HR EG + M+
Sbjct: 920 YTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRD-HRPEEGCSL---------MH 969
Query: 232 EMFMMGEDLPQLAT 245
EM +G + P+L T
Sbjct: 970 EMRRIGLE-PKLDT 982
>gi|167998294|ref|XP_001751853.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696951|gb|EDQ83288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 657
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 93/202 (46%), Gaps = 1/202 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E +L M E G +++NA++ A+ + +EEA++ V +++ P+ T ++
Sbjct: 330 RESLGLLQAMIEQGCEPRLENYNALLCAYEKTANWEEAVRTVVWIQEKGFTPDFITWSSL 389
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L AG +++ +++K + P+V+ +C LL Y K+ W+ + M N
Sbjct: 390 LGACANAGQAEKAVAVMEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSM-LNSG 448
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
++V + ++ W+ V Y +K G L + ++ + AL G + A
Sbjct: 449 CPPNEVAWNSLLSAYEKGRQWKRVLYTIEKQEELGVKLDVVAWSTTISALAKAGQWQLAE 508
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ + + + G P + ++ L+
Sbjct: 509 KKIRQMKQSGCQPNIVTYSSLI 530
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/213 (19%), Positives = 90/213 (42%), Gaps = 4/213 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ + I M SG N ++N+++ A+ +G +++ + + E++ +
Sbjct: 432 GNWEKTEEIFHSMLNSGCPPNEVAWNSLLSAYEKGRQWKRVLYTIEKQEELGVKLDVVAW 491
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+S AG ++++ +++K SG P+++ Y L+ Y W+ A + M
Sbjct: 492 STTISALAKAGQWQLAEKKIRQMKQSGCQPNIVTYSSLIKAYGDVGLWNKAESVFKSMLL 551
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR--FYNALLEALWCLGL 179
I + +++ + V + FD + YG+ Y A+ A W G
Sbjct: 552 EGIRPDSKACCALLRA-YAKGRQLDKVMFFFDSM-MPRYGIKPDKYAYAAIFWACWTCGE 609
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
+RAA ++ G P+ + L+ + H
Sbjct: 610 WQRAADYMENMEAAGCTPDTMIYTTLITMYEAH 642
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +K + + E GV + +++ I A + G+++ A K +M++ C PN T
Sbjct: 466 GRQWKRVLYTIEKQEELGVKLDVVAWSTTISALAKAGQWQLAEKKIRQMKQSGCQPNIVT 525
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ Y GL ++++ F+ + GI P C LL YAK + D D M
Sbjct: 526 YSSLIKAYGDVGLWNKAESVFKSMLLEGIRPDSKACCALLRAYAKGRQLDKVMFFFDSM 584
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 46/109 (42%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+ V N+ +I G R EA+K + MEK + T A++ G D
Sbjct: 202 ASVEPNAHVCTTLIAVLGYGRRLPEALKLFRWMEKQGIERPIYTFNALMVACGRCGAGDT 261
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ E F+E+K G+ P + + L++ + +W A ++ M S
Sbjct: 262 AVELFEEMKELGLAPDNITFRGLVSATTAAGKWKAAQSFINLMQAGGFS 310
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 38/218 (17%), Positives = 84/218 (38%), Gaps = 9/218 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I+ + E+G+ + S N V+ Q ++ A + + +PN +++V
Sbjct: 160 IMGVVHETGLRVDVRSMNVVVWQLGQMRNWDAASRVFRAFRSASVEPNAHVCTTLIAVLG 219
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ + E+ + F+ ++ GI + + L+ + D A L +EM ++
Sbjct: 220 YGRRLPEALKLFRWMEKQGIERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAP-DN 278
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR---- 185
+T + + W+ + + + G+ + E W R R +R
Sbjct: 279 ITFRGLVSATTAAGKWKAAQSFINLMQAGGFSFAI---GEFTEMQWACA-RARNSRESLG 334
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAI 223
+L ++G P L +N L+ + + WE T +
Sbjct: 335 LLQAMIEQGCEPRLENYNALLCAYEKTANWEEAVRTVV 372
>gi|410110109|gb|AFV61134.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
diamantinensis]
Length = 363
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 66/122 (54%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 36 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALXVFSEMREIKCLLDLTTCN 95
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + ++ L M
Sbjct: 96 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGESIHLFRLMQRK 155
Query: 123 RI 124
I
Sbjct: 156 NI 157
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 45/81 (55%)
Query: 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM 98
+ +AI + +++ P+ A+++V+ A L E++ E+K++G++P+ Y
Sbjct: 2 YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 61
Query: 99 LLAVYAKSNRWDDAYGLLDEM 119
LL +Y ++ ++ +A + EM
Sbjct: 62 LLTMYVENKKFLEALXVFSEM 82
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 39/200 (19%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 141 LFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 200
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++S+G+ + + ++ Y ++ A LL E+
Sbjct: 201 TIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVAYERAGLIAHAKRLLHELKRP 260
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 261 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 311
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 312 KYANVVEVFDKMRGLGYFPD 331
>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1385
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 100/208 (48%), Gaps = 7/208 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD---PNE 58
G YK ++ M+ G+A + ++N +I+ + R + K Y+ + ++R + PNE
Sbjct: 228 GRYKAASELIDAMASKGIAADVCTYNVLIDDLCRKSR---SAKGYLILRRMRKNMVYPNE 284
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T +++ G + + + F+E+ +LP+ + Y L+ + + ++A L D
Sbjct: 285 ITYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDV 344
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M ++ + G ++ G + + +V V +++ +G +G Y +++ L G
Sbjct: 345 MVSHGLRPNEVTYGALLNG-ISKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCKNG 403
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
L E A ++LD+ K + P++ + LV
Sbjct: 404 LLEEAVQLLDDMLKVSVSPDIVTFSVLV 431
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 1/204 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ M + V+ N +FN ++ A + G+F+ A +M++ P T +L+ Y
Sbjct: 165 SFFKEMIANRVSPNVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWY 224
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G + E + S GI V Y +L+ + +R Y +L M N +
Sbjct: 225 CKKGRYKAASELIDAMASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNE 284
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+I G E + VF++++ YN L+ G E A R+ D
Sbjct: 285 ITYNTLING-LVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCD 343
Query: 189 EATKRGLFPELFRHNKLVWSVDVH 212
GL P + L+ + H
Sbjct: 344 VMVSHGLRPNEVTYGALLNGISKH 367
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 81/192 (42%), Gaps = 3/192 (1%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
++G+ N + +I + + G +EA+ AY M + + T +++ +C G ++
Sbjct: 436 KTGLVPNRVLHSTLIYNYCKMGNLKEALNAYAVMNQSGHVSDHFTSSVLVASFCRCGRLE 495
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI-HQVTGQM 134
E++ + G+ PS + + ++ Y S A+ + D+M N + ++ Q T +
Sbjct: 496 EAEYFVDHMSRMGLAPSSVTFDCIIDTYGNSGDALKAFSVFDKM--NSLGHLPSQFTYEG 553
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
+ + + + + Y +G FYN +L G A +LDE
Sbjct: 554 LLKGLLIGGHINEAKIFMHRPSSIPYAIGSTFYNTMLTLTSRSGNLSNAVALLDEMVMNN 613
Query: 195 LFPELFRHNKLV 206
P+ F + L+
Sbjct: 614 FVPDSFTYTSLI 625
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 1/153 (0%)
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
C+ N + ++ V +V ++ E F+ + G PSV M+L K D +
Sbjct: 105 CNSNPAVFDLLIRVCLRENMVGDAVEAFRLMGFRGFSPSVFTCNMVLGSLVKDREVDLFW 164
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
EM NR+S + T ++ + ++ + K++ G+ YN LL
Sbjct: 165 SFFKEMIANRVSP-NVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNW 223
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A+ ++D +G+ ++ +N L+
Sbjct: 224 YCKKGRYKAASELIDAMASKGIAADVCTYNVLI 256
>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
Length = 647
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 111/265 (41%), Gaps = 36/265 (13%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQ------------------GGRFEEAI 43
GL + ++L M + G+ N ++N +I+AF + GG+ A
Sbjct: 318 GLVECALSLLDEMIKMGIKPNVVTYNTIIDAFGKSKILTEEDPGNMGIVGVYGGQIVRAT 377
Query: 44 KAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103
+ D R + + + E FQ++ G+ P+V+ + +L
Sbjct: 378 NPVTRGGRSATDVRMRRSQELFFIL----------ELFQKMVQQGVRPNVVTFSAILNAC 427
Query: 104 AKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG 163
++ N ++DA LL+++ ++++ V ++ G + W +F++L
Sbjct: 428 SRCNNFEDAALLLEQLRLFD-NSVYGVAYGLLMGHLE---AWSQARSLFNQLGRMDSPTS 483
Query: 164 MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAI 223
FYNAL + LW G R+ A +V+ E R ++ + + +D+H M G A +
Sbjct: 484 SAFYNALTDVLWHFGQRQGAQQVVLEGVNRRVWENTWGD----FCLDLHLMSCGAAQAMV 539
Query: 224 SVWLNKMYEMFMMGEDLPQLATVVV 248
WL + + G +P+ +++
Sbjct: 540 HAWLLNVRSIVFEGRAMPEFLSILT 564
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 96/240 (40%), Gaps = 36/240 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + + M G R+ ++N ++A + G E A + ++ME PN T
Sbjct: 108 GHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMELATQVVLDMEANNIKPNVVTY 167
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + DE+ + +++KS GI +CY LLA+Y K+ ++D+ + ++M
Sbjct: 168 STLMDGFSKLEKYDEALKLREKMKSLGIQLDRVCYNTLLAIYVKTGKYDEIATVCEDMEN 227
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL----------- 170
I +I G + + MV ++ + +G + Y+ L
Sbjct: 228 LGIEKDTVTYNSLING-YGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHG 286
Query: 171 ------------------------LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
++ L GL E A +LDE K G+ P + +N ++
Sbjct: 287 DAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEMIKMGIKPNVVTYNTII 346
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/194 (18%), Positives = 89/194 (45%), Gaps = 1/194 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G+ + +FN+++ A + G E+A + EM + + T + C G
Sbjct: 84 QMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCG 143
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++ + + +++++ I P+V+ Y L+ ++K ++D+A L ++M + I + +V
Sbjct: 144 NMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGI-QLDRVCY 202
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+ + + + V + + G YN+L+ G + A ++ +
Sbjct: 203 NTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRA 262
Query: 193 RGLFPELFRHNKLV 206
+G+ P + ++ L+
Sbjct: 263 QGVAPSVLTYSTLI 276
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 6/208 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG---RFEEAIKAYVEMEKVRCDPNE 58
GL E +L M +G+ + S+NAVI+A +GG RF + + +M + P+
Sbjct: 37 GLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRF--TLGYFRQMLQDGLCPDR 94
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+T ++L+ AG +++++ F E+ G + Y + K + A ++ +
Sbjct: 95 KTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMELATQVVLD 154
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M N I + VT + F + + +K+ G L YN LL G
Sbjct: 155 MEANNIKP-NVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDRVCYNTLLAIYVKTG 213
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
+ A V ++ G+ + +N L+
Sbjct: 214 KYDEIATVCEDMENLGIEKDTVTYNSLI 241
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 15/207 (7%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ Q + M + G N ++NA++ GGR +A Y M K P+ T +L
Sbjct: 68 DAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLL 127
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR-- 123
+C G +DE+ + F G +P V+ Y L+ + K+++ D+A +L M +
Sbjct: 128 HGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLV 187
Query: 124 --ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
+ + + + K DE+ +V+ +G+ + Y+ L+ L C LR
Sbjct: 188 PDVVTYNSLVNGLCKNGRVDEARMLIVD--------KGFSPNVITYSTLISGL-CRELRR 238
Query: 181 -ERAARVLDEATKRGLFPELFRHNKLV 206
E A ++L++ G P++ +N L+
Sbjct: 239 LESARQLLEKMVLNGCKPDIVSYNALI 265
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 5/207 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + QA+ RM ++G + + ++N ++ F + G+ +EA+K + K P+ T
Sbjct: 98 GGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVT 157
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL-DEM 119
A+++ +C A +DE++ Q + S ++P V+ Y L+ K+ R D+A L+ D+
Sbjct: 158 YNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKG 217
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + + + + ES Q++E K+ G + YNAL+ L
Sbjct: 218 FSPNVITYSTLISGLCRELRRLESARQLLE----KMVLNGCKPDIVSYNALIHGLAREQG 273
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
A ++ ++G PE+ +N L+
Sbjct: 274 VSEALKLFGSVLRQGYEPEVPTYNILI 300
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 90/199 (45%), Gaps = 2/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ S + + G+ ++ ++ I+ + GR E+A+ +M++ C P+ + AV++ C
Sbjct: 315 LFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLC 374
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
VDE++ +++ G P+ + + L+ ++ +W A EM +
Sbjct: 375 KEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVV 434
Query: 130 VTGQMIKGEFDDESNWQMVEYV--FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
++ G ++ E + FD + +G + Y+AL++ L G + A R+L
Sbjct: 435 TYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLL 494
Query: 188 DEATKRGLFPELFRHNKLV 206
+G P ++ +N L+
Sbjct: 495 GAMEAKGCIPNVYTYNSLI 513
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + M E G + +++A+I+ + G+ ++A + ME C PN T
Sbjct: 450 GRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTY 509
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
+++S C VDE+ E F + G +P + Y +++ K D A L D
Sbjct: 510 NSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFD 565
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 14/215 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G + S NAVI + R +EA ME C PN + ++ C
Sbjct: 350 MLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQC 409
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS---NRWDDAYGLLDEM-HTNRIS 125
AG ++ F+E+ G+ P+V+ Y +L+ K+ R +A L D M R+
Sbjct: 410 RAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVP 469
Query: 126 NIHQ----VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ + G G+ DD + + +G + YN+L+ L L +
Sbjct: 470 DVVTYSALIDGLGKAGKLDDARR------LLGAMEAKGCIPNVYTYNSLISGLCGLDKVD 523
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A + ++G P+ + ++ ++ M +
Sbjct: 524 EALELFVAMVEKGCVPDTITYGTIISALCKQEMVD 558
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 82/191 (42%), Gaps = 16/191 (8%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I+ + R EA + + + K +P+ T + C AG V+++ +++
Sbjct: 295 TYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM 354
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRISNIHQVTGQMIKGEF 139
G +P V+ + ++ K R D+A LL M N IS + GQ G+
Sbjct: 355 DEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGK- 413
Query: 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE----RAARVLDEATKRGL 195
W+ F ++ G + YN L++ L C +E A + D ++G
Sbjct: 414 -----WKKAMTTFKEMLKRGVKPTVVTYNILVDGL-CKARQEGRIKEAITLFDAMIEKGR 467
Query: 196 FPELFRHNKLV 206
P++ ++ L+
Sbjct: 468 VPDVVTYSALI 478
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 6/183 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+FN I + R +A + M K PN T A+LS C G + +++ ++ +
Sbjct: 52 TFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERM 111
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD-EMHTNRISNIHQVTGQMIKGEFDDES 143
+G P V+ Y LL + K + D+A + D + + ++ VT + F
Sbjct: 112 IKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDV--VTYNALINGFCKAD 169
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+ + ++ E + YN+L+ L C R AR+L +G P + ++
Sbjct: 170 KLDEAQRILQRMVSESLVPDVVTYNSLVNGL-CKNGRVDEARML--IVDKGFSPNVITYS 226
Query: 204 KLV 206
L+
Sbjct: 227 TLI 229
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +L M G N ++N++I + +EA++ +V M + C P+ T
Sbjct: 485 GKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITY 544
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
++S C +VD++ F +G++P+ Y L+ R D+A LL
Sbjct: 545 GTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLL 599
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 10/223 (4%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ +L +M +G + S+NA+I + EA+K + + + +P T ++
Sbjct: 243 RQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDG 302
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----TNR 123
V+E+ E F + G+ P + Y + + K+ R +DA +L +M
Sbjct: 303 LLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPD 362
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ + + V + K + DE+ E + + +G +N L+ G ++A
Sbjct: 363 VVSHNAVINGLCKEKRVDEA-----EVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKA 417
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
E KRG+ P + +N LV + R EG AI+++
Sbjct: 418 MTTFKEMLKRGVKPTVVTYNILVDGLCKAR-QEGRIKEAITLF 459
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 1/194 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + IL M G++ N +I+A+ + G+ +A+ + EM+ V + T +
Sbjct: 551 EETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVL 610
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ C AG+V+ + + F + S G+ P+V Y L+ K+N + A L DEM +
Sbjct: 611 IDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGM 670
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G N Q + ++ + Y +L+ G +A
Sbjct: 671 TPDITAFTALIDGNL-KHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQAR 729
Query: 185 RVLDEATKRGLFPE 198
+ +E ++G+ PE
Sbjct: 730 KFFNEMIEKGILPE 743
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 16/208 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M E G++ + ++N++I+ + + G EE + EM+ V C P+ T +++ YC
Sbjct: 311 LFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYC 370
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRI 124
+ + E F E+K++G+ P+V+ Y L+ + K A L +M N
Sbjct: 371 KFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEF 430
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + G + W+++ D L G L + Y ALL+ L G A
Sbjct: 431 TYTSLIDANCKAGNLTEA--WKLLN---DMLQ-AGVKLNIVTYTALLDGLCKAGRMIEAE 484
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVH 212
V K G+ P N+ V++ VH
Sbjct: 485 EVFRSMLKDGISP-----NQQVYTALVH 507
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 92/206 (44%), Gaps = 1/206 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E ++ + M + G + ++N +I + + + A + + EM+ PN T
Sbjct: 338 GSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTY 397
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G++ + + F +++ +G+LP+ Y L+ K+ +A+ LL++M
Sbjct: 398 STLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQ 457
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ ++ VT + E VF + +G + Y AL+ E
Sbjct: 458 AGV-KLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERME 516
Query: 182 RAARVLDEATKRGLFPELFRHNKLVW 207
A ++L + T+ + P+L + ++W
Sbjct: 517 DAMKILKQMTECNIKPDLILYGSIIW 542
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 9/210 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + + M + G++ N + A++ + + R E+A+K +M + P+
Sbjct: 477 AGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLIL 536
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +C ++E+K +E+KS GI + + ++ Y K+ + DA EM
Sbjct: 537 YGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQ 596
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR----FYNALLEALWC 176
+ +I G +VE D C LG++ Y +L++ L
Sbjct: 597 DVGVEATIVTYCVLIDG----LCKAGIVELAVDYF-CRMLSLGLQPNVAVYTSLIDGLCK 651
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
E A ++ DE RG+ P++ L+
Sbjct: 652 NNCIESAKKLFDEMQCRGMTPDITAFTALI 681
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 89/207 (42%), Gaps = 17/207 (8%)
Query: 5 KECQAILSRMSESG----------------VARNSDSFNAVIEAFRQGGRFEEAIKAYVE 48
+ C +L R+S+SG +A + ++N +I+ + G E + + +V+
Sbjct: 255 RSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQ 314
Query: 49 MEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108
M ++ P+ T +++ Y G ++E F E+K G +P ++ Y L+ Y K +
Sbjct: 315 MREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK 374
Query: 109 WDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYN 168
A+ EM N + + VT + F E Q +F + G Y
Sbjct: 375 MPRAFEYFSEMKNNGLKP-NVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYT 433
Query: 169 ALLEALWCLGLRERAARVLDEATKRGL 195
+L++A G A ++L++ + G+
Sbjct: 434 SLIDANCKAGNLTEAWKLLNDMLQAGV 460
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 86/206 (41%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E SRM + S N ++ + G + K + +M P+ T
Sbjct: 233 GLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTY 292
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
++ C G ++ S+ F +++ G+ P V+ Y L+ Y K ++ L +EM
Sbjct: 293 NVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKD 352
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +I G +I E + EY F ++ G + Y+ L++A G+
Sbjct: 353 VGCVPDIITYNG-LINCYCKFEKMPRAFEY-FSEMKNNGLKPNVVTYSTLIDAFCKEGMM 410
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A ++ + + GL P F + L+
Sbjct: 411 QGAIKLFVDMRRTGLLPNEFTYTSLI 436
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 91/206 (44%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +L+ M ++GV N ++ A+++ + GR EA + + M K PN++
Sbjct: 442 AGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQV 501
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ Y A ++++ + +++ I P ++ Y ++ + + ++ +L+EM
Sbjct: 502 YTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMK 561
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ IS ++ +I F + + + F ++ G + Y L++ L G+
Sbjct: 562 SRGISANPVISTTIIDAYFKAGKSSDALNF-FQEMQDVGVEATIVTYCVLIDGLCKAGIV 620
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E A GL P + + L+
Sbjct: 621 ELAVDYFCRMLSLGLQPNVAVYTSLI 646
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 1/196 (0%)
Query: 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
S F+ + F + G EEA + + M R P R+ +L +G ++ F
Sbjct: 219 SGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFN 278
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDE 142
++ +GI PSV Y +++ K +++ L +M +S +I G +
Sbjct: 279 DMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDG-YGKV 337
Query: 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
+ + V +F+++ G + YN L+ RA E GL P + +
Sbjct: 338 GSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTY 397
Query: 203 NKLVWSVDVHRMWEGG 218
+ L+ + M +G
Sbjct: 398 STLIDAFCKEGMMQGA 413
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M G+ + +F A+I+ + G +EA+ M ++ + + +++S
Sbjct: 659 KKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSG 718
Query: 68 YCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ G + ++++ F E+ GILP V+C C LL Y K + D+A L +EM
Sbjct: 719 FSQCGELHQARKFFNEMIEKGILPEEVLCIC-LLREYYKRGQLDEAIELKNEM 770
>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
Length = 659
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 35/203 (17%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++E +L M G+ + SFN ++A + G+++ A++ + E+E PN +
Sbjct: 242 WREALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSYNT 301
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+ AG+VD + E +E++ + P + Y ++A +AK N+W A LL EM
Sbjct: 302 AIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAFAKKNQWKAALELLAEMK--- 358
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
G + YN + G ERA
Sbjct: 359 --------------------------------EAPGVDPDLISYNTAMHVCAKAGRWERA 386
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+L EA +GL P++ +N ++
Sbjct: 387 TELLTEALGQGLQPDVVSYNTVM 409
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL M +A N S+ ++A + G +E A++ EME N T A + C
Sbjct: 459 ILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDACC 518
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN--RISNI 127
G VD +E+ G+ P+V+ Y + + + +WD A +L++M R+ ++
Sbjct: 519 RGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDRASAVLEQMVQRGLRLDSV 578
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFD 153
T G DE ++ + V +
Sbjct: 579 SYRTALSTAGRAGDEEGERLTKIVHE 604
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 93/198 (46%), Gaps = 9/198 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +L+ G+ + S+N V+ A + G + +A+ + ME+V P+ +
Sbjct: 381 GRWERATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSF 440
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ A + + +E+++ I P+V Y + + ++ W+ A L++EM
Sbjct: 441 NTAMHACNRALKWQAALQILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEV 500
Query: 122 NRI-SNIHQVTGQM---IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ +N+H T M +G D V + ++++ +G + Y ++A+ +
Sbjct: 501 RGVPANVHTYTAAMDACCRGGAVDR-----VLVLLEEMDGKGVEPNVVSYTIAMDAMNRV 555
Query: 178 GLRERAARVLDEATKRGL 195
G +RA+ VL++ +RGL
Sbjct: 556 GKWDRASAVLEQMVQRGL 573
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y + + + + G A N S+N I A + G + A + EM+ + P+ +
Sbjct: 275 GQYDLALELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSY 334
Query: 62 EAVLSVYCFAGLVDESKEQFQEIK-SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
V++ + + E E+K + G+ P ++ Y + V AK+ RW+ A LL E
Sbjct: 335 NTVMAAFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTE 392
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 9/231 (3%)
Query: 4 YKECQAILSRMSES-GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+K +L+ M E+ GV + S+N + + GR+E A + E P+ +
Sbjct: 347 WKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPDVVSYN 406
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ AG ++ + F ++ G+ P + + + ++ +W A +L EM
Sbjct: 407 TVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREMEAR 466
Query: 123 RIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I+ N+ T + W+ + +++ G + Y A ++A G +
Sbjct: 467 SIAPNVKSYT--IAVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDACCRGGAVD 524
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
R +L+E +G+ P N + +++ + M G + S L +M +
Sbjct: 525 RVLVLLEEMDGKGVEP-----NVVSYTIAMDAMNRVGKWDRASAVLEQMVQ 570
>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
Length = 1443
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/277 (19%), Positives = 108/277 (38%), Gaps = 32/277 (11%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L ++ + M N ++ +++ +R G +A M++ +P T+
Sbjct: 1005 LREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMH 1064
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ Y AG E++ +KSS + S + Y + Y K+ +D L EM +
Sbjct: 1065 ILMTSYGTAGQPHEAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGIKKLLEMKRD 1124
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR----------------- 165
+ HQV I+ E + + +C G+ L +R
Sbjct: 1125 GVEPDHQVWTCFIRAASLCEQTADAILLLKSLQDC-GFDLPIRLLTERTPSLLSEIANYL 1183
Query: 166 -------------FYNALLEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDV 211
F NA+ + LW R A+R+ A +R ++ + +FR + W D
Sbjct: 1184 EELEALEDSAALNFVNAVEDLLWAFECRATASRIFQLAVERSIYRDNVFRVAQKDWGADF 1243
Query: 212 HRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
++ G A +++WL+ M + + G + V+V
Sbjct: 1244 RKLSAGAALVGLTLWLDHMQDASLQGSPESPKSVVLV 1280
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GLY++ +A+ M ++G DS N ++ A GR +E E++ + ++ T
Sbjct: 793 SGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQDMDFKISKST 852
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +L + AG V E + + +K++G LP++ Y + ++ NR+ D ++ EM
Sbjct: 853 VLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEME 912
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ ++ + N+ V+ + G YN L+ ++C LR
Sbjct: 913 GAGFKPDLSIFNSLL-NMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLI-VMYCRSLR 970
Query: 181 -ERAARVLDEATKRGLFPELFRHNKLV 206
E +L+E KRGL P+L + L+
Sbjct: 971 PEEGFTLLNEMGKRGLTPKLQSYKSLL 997
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 87/197 (44%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + +SG+ + ++N +I A Q E+A+ + EM C P+ T A++SV+
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHG 339
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +E++ F E+ G +P + Y LL +AK D +E+ ++
Sbjct: 340 RCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKK-NE 398
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T + + + ++D++ G Y ++++L + A +VL++
Sbjct: 399 ITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLED 458
Query: 190 ATKRGLFPELFRHNKLV 206
GL P L + L+
Sbjct: 459 MADAGLKPTLVAFSALI 475
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 53/106 (50%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+ ++G +N ++N +I + + GR + A+ Y EM V C P+ T ++
Sbjct: 389 LVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDK 448
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ E+ + +++ +G+ P+++ + L+ YAK R DA D M
Sbjct: 449 IAEAGKVLEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCM 494
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 57/119 (47%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ + +++ M +G + FN+++ + G F+ + Y + + +P+E T
Sbjct: 901 FRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNT 960
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ +YC + +E E+ G+ P + Y LLA AK+ + A L +EM +
Sbjct: 961 LIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFEEMRSK 1019
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 89/199 (44%), Gaps = 28/199 (14%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE--SKEQFQE 83
FNA++ + + GRF++A + M DP+ + +++ +G + + + E
Sbjct: 224 FNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFE 283
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----------NRISNIHQVTGQ 133
++ SG+ P V+ Y L++ ++S+ +DA + +EM N + ++H G+
Sbjct: 284 VRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGK 343
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ E +F +L +G+ YN+LL A G ++ +E K
Sbjct: 344 A-----------EEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKA 392
Query: 194 GLFPELFRHNKLVWSVDVH 212
G F+ N++ ++ +H
Sbjct: 393 G-----FKKNEITYNTMIH 406
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 38/189 (20%)
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
P R + VL V A ++E F G +V + ++ VYA+S R+DDA L
Sbjct: 186 PASRAVAVVLGVLGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDDARQL 243
Query: 116 LDEMHT----------NRISNIHQVTGQMIKGEFDD------------------------ 141
LD MH N + N +G + G D
Sbjct: 244 LDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISAC 303
Query: 142 --ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
SN + VF+++ + YNA++ G E A R+ E ++G P+
Sbjct: 304 SQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDA 363
Query: 200 FRHNKLVWS 208
+N L+++
Sbjct: 364 VTYNSLLYA 372
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 3/151 (1%)
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
E +++ A L E+ + F +++ GI S Y +++ Y K + A+GL+D+
Sbjct: 679 EHLITCLVEAELFSEACQVFCDMQFIGIEASKNIYESIISTYCKLGFPETAHGLMDDALQ 738
Query: 122 NRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ I NI +I+ + + WQ E + L + G+ R +NAL+ A GL
Sbjct: 739 SGIPLNILSCRVIIIEA-YGNIKLWQQAEILVKGLR-QASGIDRRIWNALIHAYAESGLY 796
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDV 211
E+A V D K G P + N ++ ++ V
Sbjct: 797 EKARAVFDNMIKTGPLPTVDSVNGMMRALIV 827
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY E +A+ G ++ ++ +I++ + + EA K +M P
Sbjct: 419 GLYDEMRAV-------GCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAF 471
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
A++ Y G ++++ F + +SG+ P + Y ++L V+A+S
Sbjct: 472 SALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARS 516
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 55/114 (48%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L M+++G+ +F+A+I A+ +GGR +A K + M P+ +L
Sbjct: 451 EAGKVLEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVML 510
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
V+ +G ++ ++ + + P Y +LL AK ++ ++ ++ +M
Sbjct: 511 DVFARSGETEKMLRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQDM 564
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 91/186 (48%), Gaps = 3/186 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E IL M + G+ N ++N++++A + +EA+ + M++++C PN T
Sbjct: 679 GRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTY 738
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C +++ +QE++ G++P+V+ Y +++ AK DAY L + T
Sbjct: 739 SILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKT 798
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEY-VFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N +I+G +N M Y VF++ G L ++ +LL+AL
Sbjct: 799 NGGIPDSASFNALIEGM--SNANRPMEAYQVFEETRLRGCRLNVKTCISLLDALNKTECL 856
Query: 181 ERAARV 186
E+AA V
Sbjct: 857 EQAAIV 862
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 9/210 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E I MS+ G A ++ ++NAV++ + G+ ++A + EM+ P T
Sbjct: 573 AGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVAT 632
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +DE+ F+E KS GI +V+ Y L+ + K R D+AY +L+EM
Sbjct: 633 YGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMM 692
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
T + + + ++K E DE+ + ++ C Y+ L+ L
Sbjct: 693 KKGLTPNVYTWNSLMDALVKTEEIDEA--LICFQSMKEMKCSP---NTYTYSILINGLCR 747
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +A E K+GL P + + ++
Sbjct: 748 VQKYNKAFVFWQEMQKQGLIPNVVTYTTMI 777
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 17/205 (8%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N I+ F + G + A K + E++ P++ + +++ V C AG + E++E F +++
Sbjct: 249 YNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQME 308
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----TNRISNIHQVTGQMIKGEFDD 141
+ +P Y ++ Y + R+DDAY LL+ + + + + + + K D
Sbjct: 309 AERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVD 368
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
E+ +FD + + + YN +++ L G A ++ DE GLFP L
Sbjct: 369 EALT-----LFDVMKKDAKP-NISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLS 422
Query: 202 HNKLVWSV-------DVHRMWEGGA 219
N +V + + HR++E +
Sbjct: 423 VNIMVDRLCKANQLEEAHRIFESAS 447
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 85/206 (41%), Gaps = 36/206 (17%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +AI M G + S++ +I + G+ E + M + + R
Sbjct: 538 AGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARA 597
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AV+ C +G VD++ E +E+K + P+V Y ++ AK +R D+AY L +E
Sbjct: 598 YNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAK 657
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +G L + Y++L++ +G
Sbjct: 658 S------------------------------------KGIELNVILYSSLIDGFGKVGRI 681
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A +L+E K+GL P ++ N L+
Sbjct: 682 DEAYLILEEMMKKGLTPNVYTWNSLM 707
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 98/254 (38%), Gaps = 69/254 (27%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N ++N +I+ GR EA K EME PN ++ ++ C A ++E+ F
Sbjct: 384 NISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIF 443
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----------HTNRISNI--- 127
+ G P+ + YC L+ K + DDAY L ++M +T+ I N
Sbjct: 444 ESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMH 503
Query: 128 ------HQVTGQMIK--------------------GE-------FDDESNWQMVEYV--- 151
H++ +MI+ GE F+D ++ + V
Sbjct: 504 GRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSY 563
Query: 152 -------------------FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
F ++ +G+ L R YNA+++ L G ++A VL+E
Sbjct: 564 SILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKV 623
Query: 193 RGLFPELFRHNKLV 206
+ + P + + +V
Sbjct: 624 KHVHPTVATYGSIV 637
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/214 (18%), Positives = 87/214 (40%), Gaps = 45/214 (21%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRC------------------------------ 54
++N +I + RF++A K + + C
Sbjct: 318 AYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVM 377
Query: 55 ----DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110
PN T ++ + C AG V+E+ + E++ +G+ P+++ +++ K+N+ +
Sbjct: 378 KKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLE 437
Query: 111 DAYGLLDEM-----HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR 165
+A+ + + + N ++ + G KG+ DD +F+K+ G+
Sbjct: 438 EAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYR------LFEKMLDAGHDANPI 491
Query: 166 FYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
Y +L+ + G +E ++ E +RG P+L
Sbjct: 492 IYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDL 525
>gi|15219274|ref|NP_175740.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192173|sp|Q9MAG8.1|PPR79_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g53330
gi|7769859|gb|AAF69537.1|AC008007_12 F12M16.23 [Arabidopsis thaliana]
gi|332194805|gb|AEE32926.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 471
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 3/211 (1%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
LS + E G ++ ++N +I Q G F++A+K + EM K + P T ++ C
Sbjct: 141 LSSIDEFG-KPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCK 199
Query: 71 AGLVDES-KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
V E+ K + +K G+ P+V Y L+ + A+ L DE + +I
Sbjct: 200 DSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAA 259
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ +I V + ++++ +G YN L+ E A RVLDE
Sbjct: 260 IYSTLI-SSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDE 318
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
++GL P++ +N ++ + WE Y
Sbjct: 319 MVEKGLKPDVISYNMILGVFFRIKKWEEATY 349
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 6/225 (2%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q +L +++ + F VI F +G A+ + EM + RC ++L ++LS
Sbjct: 68 QVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQRTVKSLNSLLSA 127
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
G +++ KE+ I G P Y +L+ ++S +DDA L DEM ++
Sbjct: 128 LLKCGELEKMKERLSSIDEFG-KPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPT 186
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
G +I G D + ++ D L G + Y +L++AL +G A ++
Sbjct: 187 GVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLK 246
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
DEA + + + + ++S + + + G +S+ L +M E
Sbjct: 247 DEAYEGKI-----KVDAAIYSTLISSLIKAGRSNEVSMILEEMSE 286
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 96/218 (44%), Gaps = 8/218 (3%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E + ++ ++ +I + + GR E EM + C P+ T +++ +C +
Sbjct: 251 EGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSE 310
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
+ E+ G+ P V+ Y M+L V+ + +W++A L ++M R + ++ +++
Sbjct: 311 SANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDM-PRRGCSPDTLSYRIV 369
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ ++ + D++ +GY L+ L G E ++V+ + RG+
Sbjct: 370 FDGLCEGLQFEEAAVILDEMLFKGYKPRRDRLEGFLQKLCESGKLEILSKVI-SSLHRGI 428
Query: 196 FPELFRHNKLVWSVDVHRMWEGGAYT-AISVWLNKMYE 232
+ VWSV + M + + +I + LN + E
Sbjct: 429 -----AGDADVWSVMIPTMCKEPVISDSIDLLLNTVKE 461
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 89/198 (44%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+I +M + + ++NA+I + R EA +EMEK +P+ T ++ Y
Sbjct: 384 SIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAY 443
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG +++ +++ G+ P+V+ Y ++ + K+ + +A +LD+M +
Sbjct: 444 GRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGA 503
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
QV +I + S Q + +K+ G + YN L++ L A +LD
Sbjct: 504 QVYNAIIDAYIECGSTDQAF-MLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLD 562
Query: 189 EATKRGLFPELFRHNKLV 206
GL P++ +N L+
Sbjct: 563 SLRNYGLAPDVISYNTLI 580
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++C ILS M E G+ N S+ +++ AF + G+ EA+ +M P +
Sbjct: 447 GQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVY 506
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ Y G D++ +++KSSG+ PS++ Y +L+ K ++ +A LLD +
Sbjct: 507 NAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSL 564
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 5/213 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ M ++GV + ++FN +I+A+ + G+ E+ +M++ PN + +++
Sbjct: 416 EAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIV 475
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ +C G + E+ ++ +LP Y ++ Y + D A+ L ++M ++ +
Sbjct: 476 NAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVP 535
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+IKG +S E + D L G + YN L+ A +RA
Sbjct: 536 PSIVTYNLLIKG-LCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALE 594
Query: 186 VLDEATKRGLFPELFRHNKLVWSVD----VHRM 214
+ E K G+ P + L S+ VH M
Sbjct: 595 LEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEM 627
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 2/206 (0%)
Query: 2 GLYKECQAILSRMSESGV-ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +L RM G A N+ S+N VI + G +A+K + EM + PN T
Sbjct: 166 GDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHIT 225
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ + G ++ + ++ G+ P+V+ Y +LL+ ++ R + +LDEM
Sbjct: 226 YNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMA 285
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ ++ + G + M+ +F++ +G +G + LL L G
Sbjct: 286 SRKMVPDGFTYSILFDGHSRTGDSQTMLS-LFEESVKKGVKIGAYTCSILLNGLCKDGKI 344
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+A VL GL +N L+
Sbjct: 345 SKAEEVLQTLVNSGLLQTTVIYNTLI 370
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +L + G+A + S+N +I A + A++ EM K P+ RT +
Sbjct: 556 EAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLF 615
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
S AG V E + +Q++ ++P Y +++ YAK L EM I+
Sbjct: 616 SSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKGIA 675
>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
Length = 826
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 14/229 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQG----GRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
I ++ + V RN D N + +G G+ EE + C PN ++
Sbjct: 185 IARKVYDEMVDRNGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKGCVPNIVFYNTLI 244
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
YC G ++ + F+E+K G LP+V Y ++ + K +++ LL EM ++
Sbjct: 245 DGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMKERGLA 304
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYV--FDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
Q+ +I F + + V + CE M YN L+ G A
Sbjct: 305 VSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEP---DMATYNTLINGSCSKGKVREA 361
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+L+ A +RGLFP NK ++ +H + G Y S L +M E
Sbjct: 362 EELLEHAIRRGLFP-----NKFSYTPLIHAFSKNGEYVRASELLIEMSE 405
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 13/211 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEA-FRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +L M E G+A + FN +I+A F+ G E A A M + C+P+ T
Sbjct: 286 GKFEAVDKLLVEMKERGLAVSLQIFNGIIDARFKHGCEIEAA-DAVRWMIESGCEPDMAT 344
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+++ C G V E++E + G+ P+ Y L+ ++K+ + A LL EM
Sbjct: 345 YNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMS 404
Query: 120 ---HT-NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
HT + I+ V G ++ GE D + V DK+ G YN L+ L
Sbjct: 405 ERGHTLDLIAYGALVHGLVVAGEVD------VALTVRDKMMERGILPDANIYNVLMSGLC 458
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G A ++L E + + P+ F + LV
Sbjct: 459 KKGRFPAAKQLLVEMLDQNVTPDAFVNATLV 489
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/208 (18%), Positives = 94/208 (45%), Gaps = 12/208 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + RM + + +++ +I+ + + A++ + M K C PN T
Sbjct: 531 GMMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTF 590
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C G ++ +++ F+E++S G P+V+ Y +L+ + K + A ++M
Sbjct: 591 TSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACFFFEQMLI 650
Query: 122 NR-----------ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
N+ ++ + G I + + +E+ F + +G+ + YN++
Sbjct: 651 NKCIPNDATFNYLVNGLTNNNGIAISSKRSNSQPNLTLEF-FGMMISDGWDWRIAAYNSI 709
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPE 198
L L + + A ++ D+ +G P+
Sbjct: 710 LLCLCQHKMVKPALQLHDKMMSKGFPPD 737
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 97/237 (40%), Gaps = 10/237 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ +M E G+ +++ +N ++ + GRF A + VEM P+ ++ +
Sbjct: 433 TVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNATLVDGF 492
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G +DE+K+ FQ GI SV+ ++ Y K +DA M N + +
Sbjct: 493 IRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMF-NGVHSPD 551
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ T I + +++ + +F + + + + +L+ G RA +V +
Sbjct: 552 EFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFE 611
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLAT 245
E G P N + +++ + + G T + +E ++ + +P AT
Sbjct: 612 EMRSFGFEP-----NVVTYTILIGYFCKEGKLTKACFF----FEQMLINKCIPNDAT 659
>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 755
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 4/211 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E ++L ++ G++++S S ++VI+ F + G+ EEAIK + R PN
Sbjct: 386 AGFLREATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKL---IHSFRLRPNIFV 442
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ LS C G + + FQEI G+LP CY ++ Y R D A+ +
Sbjct: 443 YSSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGYCTLGRTDKAFQFFGALL 502
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + +T ++ G + E VF + EG + YN L+
Sbjct: 503 KSG-NPPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYGYGKTHQL 561
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDV 211
+ ++DE G+ P++ +N L+ S+ V
Sbjct: 562 NKVFELIDEMRSAGISPDVATYNILIHSMVV 592
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/212 (19%), Positives = 87/212 (41%), Gaps = 1/212 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +++ M G+ + ++N ++ + + + + + EM P+ T
Sbjct: 524 GSISDAESVFRIMKTEGLHPDVVTYNNLMYGYGKTHQLNKVFELIDEMRSAGISPDVATY 583
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G VDE+ E E+ G +PS + + ++ +K + +A+ L M
Sbjct: 584 NILIHSMVVRGYVDEANEIISELIRRGFVPSALAFTDVIGGLSKRGDFQEAFILWFYMAD 643
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R+ ++ G + + +FDKL G + YN L+ +G E
Sbjct: 644 LRVKPDVVTCSALLHG-YCRAQRMEKAIVLFDKLLDAGLKPDVVLYNTLIHGYCSVGDIE 702
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHR 213
+A ++ +RG+ P H+ LV ++ R
Sbjct: 703 KACELIGLMVQRGMLPNESTHHALVVGLEGKR 734
>gi|147772266|emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
Length = 483
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 1/211 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M + G +S NA I A R + A+ Y EM++ R PN TL V+ +C
Sbjct: 133 VFCQMKDYGFLPRVESCNAYISASISLQRGDIALTFYREMQRYRISPNVYTLNMVMCAFC 192
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++++ E F+++++ G P++ Y L+A Y + L M N +
Sbjct: 193 KWGKLEKAIEVFKKMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDV 252
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G F +F ++ YN L+ +G E R+ DE
Sbjct: 253 TFNTLING-FCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDE 311
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
+ G+ ++ +N L+ + + + AY
Sbjct: 312 MLRNGIKADILTYNALILGLCMEGRTKKAAY 342
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 87/209 (41%), Gaps = 1/209 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M G + S+N +I + G +K + MEK P++ T +++ +C
Sbjct: 203 VFKKMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFC 262
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + E+ + F E+K++ ++P+ + Y L+ Y++ + L DEM N I
Sbjct: 263 RGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADIL 322
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G E + Y+ +L+ E ++AL+ ERA ++
Sbjct: 323 TYNALILG-LCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKS 381
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+ G P L+ + + ++G
Sbjct: 382 MIRSGCHPNYHTFKMLISTFCKNEDFDGA 410
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 59/124 (47%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G+ + ++NA+I GR ++A E+++ PN T A+++ C
Sbjct: 312 MLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKN 371
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ + + ++ + SG P+ + ML++ + K+ +D A ++ EM I+ +
Sbjct: 372 SERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSDTLSE 431
Query: 134 MIKG 137
+ +G
Sbjct: 432 LCRG 435
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG E I S M + V N+ ++N +I + Q G E + + EM + + T
Sbjct: 264 GGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILT 323
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
A++ C G ++ +E+ ++P+ + L+ + A+ L M
Sbjct: 324 YNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMI 383
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ N H T +M+ F ++ V +++ + L LW G
Sbjct: 384 RSGCHPNYH--TFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSDTLSELCRGLWLSGK 441
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
E A ++ E + L PE F K +
Sbjct: 442 EELALKLCKEMEMKHLMPEGFDKXKTI 468
>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
Length = 817
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 1/199 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV+ + F I AF +GG+ EEAI+ + +ME+ PN T V+ +G DE+
Sbjct: 247 GVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEA 306
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+++ G+ P+++ Y +L+ K+ R DAY +L EM V +I
Sbjct: 307 FMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDS 366
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ S + +E + D + +G L YN L++ G + A R+L E G
Sbjct: 367 LIEAGSLNKAIE-IKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNV 425
Query: 198 ELFRHNKLVWSVDVHRMWE 216
++ + H M++
Sbjct: 426 NQGSFTSVICLLCSHHMFD 444
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 100/236 (42%), Gaps = 5/236 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +E + S+M E+GV N ++N VI+ GR++EA +M + +P T
Sbjct: 265 GGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLIT 324
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ A + ++ +E+ G P+V+ Y L+ ++ + A + D M
Sbjct: 325 YSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMV 384
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +S +IKG + + E + ++ G+ + + +++ L +
Sbjct: 385 SKGLSLTSSTYNTLIKG-YCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMF 443
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMM 236
+ A R + E R + P L+ + H G A+ +WL + + F++
Sbjct: 444 DSALRFVGEMLLRNMSPGGGLLTTLISGLCKH----GKHSKAVELWLKFLNKGFLV 495
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 1/189 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G + S+N +I + +EA EM K P+ T ++ V+E+
Sbjct: 527 GFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEA 586
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ + + K +G++P V Y +++ K+ R ++ L DEM +N + V +I G
Sbjct: 587 IQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLI-G 645
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ M + + + +G Y +L++ + + E A +L+E GL P
Sbjct: 646 AYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEP 705
Query: 198 ELFRHNKLV 206
+F + L+
Sbjct: 706 NVFHYTALI 714
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E Q + M + + N+ +N +I A+ + GR A++ +M+ PN T ++
Sbjct: 619 EEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSL 678
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ V+E+K +E++ G+ P+V Y L+ Y K + LL EMH+
Sbjct: 679 IKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSK-- 736
Query: 125 SNIH--QVTGQMIKGEFDDESN 144
N+H ++T ++ G + + N
Sbjct: 737 -NVHPNKITYTVMIGGYARDGN 757
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 87/201 (43%), Gaps = 21/201 (10%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+G+ + +++ +I+ + R EE K + EM PN ++ YC +G +
Sbjct: 596 NGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSM 655
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVT---- 131
+ E +++K GI P+ Y L+ + +R ++A LL+EM + N+ T
Sbjct: 656 ALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALID 715
Query: 132 -----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
GQM+K VE + +++ + Y ++ G A+R+
Sbjct: 716 GYGKLGQMVK-----------VECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRL 764
Query: 187 LDEATKRGLFPELFRHNKLVW 207
L E ++G+ P+ + + ++
Sbjct: 765 LHEMREKGIVPDSITYKEFIY 785
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G++ NS ++ ++I+ R EEA EM +PN A++ Y G
Sbjct: 663 MKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQ 722
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ + + +E+ S + P+ + Y +++ YA+ +A LL EM I
Sbjct: 723 MVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGI 773
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + +L M G+ N + A+I+ + + G+ + EM PN+ T +
Sbjct: 689 EEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVM 748
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+ Y G V E+ E++ GI+P + Y + Y K A+ DE
Sbjct: 749 IGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGYLKQGGVLQAFKGSDE 802
>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
Length = 653
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 1/196 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E +L M+ G N+ S+ V++ R+ +A +M + C PN T
Sbjct: 414 GLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTF 473
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V++ C GLV+++ E +++ +G P ++ Y ++ K+ + D+A LL+ M
Sbjct: 474 NTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVM-V 532
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N+ + + + I E V +FD + YNA++ +L G +
Sbjct: 533 NKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTD 592
Query: 182 RAARVLDEATKRGLFP 197
RA L G P
Sbjct: 593 RAIEFLAYMVSSGCMP 608
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q ++ M G N +FN +I + G FE + +M C P+ R VL
Sbjct: 245 QDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDG 304
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
C G ++ + E + S G+ P+V+CY +L + RW+ A LL EM N
Sbjct: 305 VCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDN 359
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 5/199 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL RM G+ N +N V++ R+E+A + EM C ++ T ++ +C
Sbjct: 317 ILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFC 376
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT--NRISNI 127
GLV E +++ G +P V+ Y ++ + K D+A LL M R + I
Sbjct: 377 QNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTI 436
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
++KG E W E + ++ +G +N ++ L GL E+A +L
Sbjct: 437 SYTI--VLKGLCSAE-RWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELL 493
Query: 188 DEATKRGLFPELFRHNKLV 206
+ G P+L ++ ++
Sbjct: 494 KQMLLNGCSPDLISYSTVI 512
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 103/231 (44%), Gaps = 13/231 (5%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ + +L+ M ++ + +FN +++ F Q G I+ +M + C P+ T
Sbjct: 346 WEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTT 405
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
V++ +C GL+DE+ + + + G P+ + Y ++L + RW DA L+ +M
Sbjct: 406 VINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQG 465
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
S + VT + + + + ++ G + Y+ +++ L G + A
Sbjct: 466 CSP-NPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEA 524
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234
+L+ +G+ P N +++S + + G +N++ +MF
Sbjct: 525 LELLNVMVNKGMSP-----NTIIYSSIASALSKEG-------RINRVIQMF 563
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 83/207 (40%), Gaps = 2/207 (0%)
Query: 1 GGLYKECQAILSRMSES-GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GG E +L + S G + S+NAV++ R+ EM +V C PN
Sbjct: 202 GGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVV 261
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T ++ C GL + + ++ G P + Y +L K + A+ +LD M
Sbjct: 262 TFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRM 321
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + ++KG E W+ E + ++ L +N L++ GL
Sbjct: 322 PSYGLKPNVVCYNTVLKGLCSAE-RWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGL 380
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
R +L++ + G P++ + ++
Sbjct: 381 VYRVIELLEQMLEHGCVPDVITYTTVI 407
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 8/221 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAF---RQGGRFEEAIKAYVEMEKVRCDPNE 58
G + ++L M G A ++ ++EA GG F A++ ++ C +
Sbjct: 129 GRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDV 188
Query: 59 RTLEAVLSVYC-FAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
VL+ C G VDE+ +++ +S G P V+ Y +L + RW L+
Sbjct: 189 GNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLM 248
Query: 117 DEM-HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
+EM N+ VT + G ++ V V ++ G +R Y +L+ +
Sbjct: 249 EEMVRVGCPPNV--VTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVC 306
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
G E A +LD GL P + +N ++ + WE
Sbjct: 307 KEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWE 347
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 2/206 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERT 60
G E A+L RM E G+ ++ +++ + G A+ +ME+V PN
Sbjct: 198 GRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVI 257
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ C G +++ F E++ GI P + Y ++ + S RW DA LL EM
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+IS VT + F E + ++D++ G YN++++
Sbjct: 318 ERKISP-DVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRL 376
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A + +G P++F L+
Sbjct: 377 DAAEDMFYLMATKGCSPDVFTFTTLI 402
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 10/218 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + +L M E ++ + ++NA+I AF + G+F EA + Y EM PN T
Sbjct: 304 GRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITY 363
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
+++ +C +D +++ F + + G P V + L+ Y + R DD LL EM
Sbjct: 364 NSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPR 423
Query: 121 ----TNRISNIHQVTGQMIKGEFDD--ESNWQMVE--YVFDKLNCEGYGLGMRFYNALLE 172
N ++ + G + G+ + + + QM+ D + C G+ L +
Sbjct: 424 RGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKD 483
Query: 173 ALWCLGLRERAARVLDEATK-RGLFPELFRHNKLVWSV 209
AL +++ LD + G+ P++ +N L+ +
Sbjct: 484 ALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGL 521
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 78/182 (42%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SFN +I+ F + A+ + ++ K+ P+ T +L C V E+ + F ++
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM 175
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ P+V+ + L+ + R +A LLD M + + G ++ G
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + Y+A++++L G A + E ++G+FP+LF +N
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295
Query: 205 LV 206
++
Sbjct: 296 MI 297
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + + M G+ ++ +++++I+ + R +EA + +V M PN T
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTF 584
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC AG VD+ E F E+ GI+ + Y L+ + K + A + EM +
Sbjct: 585 NTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMIS 644
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL 162
+ + M+ G + E + V + D GY L
Sbjct: 645 SGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQMSVGYQL 685
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 91/199 (45%), Gaps = 4/199 (2%)
Query: 10 ILSRMSE-SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L +M E S + N ++A+I++ + GR +A + EM++ P+ T +++ +
Sbjct: 241 LLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGF 300
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +G ++++ QE+ I P V+ Y L+ + K ++ +A L DEM I
Sbjct: 301 CSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNT 360
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVL 187
MI G F + E +F + +G + + L++ +C R + +L
Sbjct: 361 ITYNSMIDG-FCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDG-YCGAKRIDDGMELL 418
Query: 188 DEATKRGLFPELFRHNKLV 206
E +RGL +N L+
Sbjct: 419 HEMPRRGLVANTVTYNTLI 437
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + Q + + M E G+ + ++N++I F GR+ +A + EM + + P+ T
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ + G E+ E + E+ GI+P+ + Y ++ + K +R D A + M T
Sbjct: 329 NALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMAT 388
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
S +I G + +E + ++ G YN L+ +G
Sbjct: 389 KGCSPDVFTFTTLIDGYCGAKRIDDGME-LLHEMPRRGLVANTVTYNTLIHGFCLVGDLN 447
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + + G+ P++ N L+
Sbjct: 448 AALDLSQQMISSGVCPDIVTCNTLL 472
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+GV + ++N +I G+F EA + Y EM P+ T +++ C +DE
Sbjct: 505 NGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ + F + S P+V+ + L+ Y K+ R DD L EM
Sbjct: 565 ATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEM 607
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-----PNERTLEAVLSV 67
+M SGV + + N +++ G+ ++A++ + M+K + D P VL+
Sbjct: 455 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTY 514
Query: 68 -YCFAGLVDESK-----EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
GL++E K E ++E+ GI+P + Y ++ K +R D+A + M +
Sbjct: 515 NILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS 574
Query: 122 NRISNIHQVTGQMIKG 137
S +I G
Sbjct: 575 KSFSPNVVTFNTLING 590
>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 1 [Brachypodium distachyon]
gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 2 [Brachypodium distachyon]
Length = 704
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 86/187 (45%), Gaps = 6/187 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEK----VRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
S NA+++AF + RF +A + + R PN +T +L C G +D +
Sbjct: 122 SHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGDLDRAVTL 181
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140
F ++ G+ P + Y L++ + K+NR D+A LLDEM + + ++ G F
Sbjct: 182 FDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFR 241
Query: 141 DESNWQMVEYVFDKL-NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
+ ++ V+++L G + YN +L+ L LG+ + A V + P++
Sbjct: 242 N-GEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDM 300
Query: 200 FRHNKLV 206
+ ++
Sbjct: 301 ITYGTMI 307
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 11/211 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
++S NS +NA+I F Q +F +AI+ Y +M + C P T ++ C A
Sbjct: 465 KISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAE 524
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL----LDE-MHTNRISNI 127
E+ +E+ G + V Y L+ + + D A L LD+ + T+ + +
Sbjct: 525 KYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHN 584
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ G G+ D+ S Q++ + +K NC + YN L++ + G ++AA +
Sbjct: 585 ILIHGLCSAGKVDEAS--QLLSEMKEKNNCCP---NVVTYNTLMDGFYETGCFDKAASLW 639
Query: 188 DEATKRGLFPELFRHNKLVWSV-DVHRMWEG 217
+ GL P++ +N + + +R EG
Sbjct: 640 MAILENGLVPDIISYNTRIKGLCSCNRTPEG 670
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 13/197 (6%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
+ G + N ++N +++ + G F+EA + M P+ T ++ C + VD
Sbjct: 258 DPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVD 317
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
+ + E+ +G++P V+ Y LL + + R +A+ D M + I N+ M+
Sbjct: 318 SAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNVTSYN-IML 376
Query: 136 KGEFD----DESN--WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
KG FD D++ W+++E D L+ + M ++ ++ L G ++ ++L+E
Sbjct: 377 KGLFDGGMVDKATDLWELLEKD-DSLSPD-----MVTFSTMIHGLCEKGFANKSLQILEE 430
Query: 190 ATKRGLFPELFRHNKLV 206
A G + F ++ ++
Sbjct: 431 ARTSGKELDEFSYSSMI 447
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 14/231 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + IL SG + S++++I + GR ++A+K Y ++ PN
Sbjct: 419 GFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIY 478
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ +C A ++ + ++ + P+ + Y L+ K+ ++ +A EM
Sbjct: 479 NALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLE 538
Query: 122 NRISNIHQVTGQMIKGEFDD---ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
G +I+G D + + + DK G + +N L+ L G
Sbjct: 539 KGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDK----GLQTDVVMHNILIHGLCSAG 594
Query: 179 LRERAARVLDEAT-KRGLFPELFRHNKLVWSVDVHRMWEGGAY-TAISVWL 227
+ A+++L E K P + +N L + +E G + A S+W+
Sbjct: 595 KVDEASQLLSEMKEKNNCCPNVVTYNTL-----MDGFYETGCFDKAASLWM 640
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 90/214 (42%), Gaps = 7/214 (3%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERTLEAVLSVYCFAG 72
MS SG+ RN S+N +++ GG ++A + +EK P+ T ++ C G
Sbjct: 361 MSVSGI-RNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKG 419
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++S + +E ++SG Y +++ K R DDA L +++ + +
Sbjct: 420 FANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYN 479
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+I G F S + V+ ++ YN L+ L A+R E +
Sbjct: 480 ALING-FCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLE 538
Query: 193 RGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
+G ++ + L+ + + +G A+++W
Sbjct: 539 KGCMLDVNTYGSLIRGLCRDKKIDG----ALALW 568
>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 36/205 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ Q I + ++G+ + SFN +I + + G EE + + ME+ R P+ T
Sbjct: 246 GKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTY 305
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C ++++ F+E+ G++P+ + + L+ K+ R D A + +M T
Sbjct: 306 SALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFT 365
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+G + YN L++ L G
Sbjct: 366 ------------------------------------KGLKADLVLYNTLIDGLCKGGYFR 389
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + + E TKRGL P+ F + L+
Sbjct: 390 EARKFVGEMTKRGLIPDKFTYTTLL 414
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I +M G+ + +N +I+ +GG F EA K EM K P++ T +L C
Sbjct: 359 IYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSC 418
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ + E +E+ GI + + +++ + + DA L EM +
Sbjct: 419 KEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKP-DD 477
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
T M+ F + + +M + ++ +G+ G+ YN L+ L G + A +L+
Sbjct: 478 GTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNA 537
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P+ +N L+
Sbjct: 538 MLNLGVVPDDITYNILL 554
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E + +LS G N +NA+I+ + G E A+ + M+ C PN RT
Sbjct: 190 AGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRT 249
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S +C + +D + F + +G++P+V+ Y L+ + D AY LL M
Sbjct: 250 YTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSME 309
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + +I E + + + L +G + Y +L++ L G
Sbjct: 310 NSGLVPNEWTCSVLIDALCKHERVGE-AQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRF 368
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A R++ +G P+ ++ L+
Sbjct: 369 AAADRLMQTLVSQGFVPDAHTYSSLI 394
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 1/197 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL + M G R + ++ A++ G EA+ + M+ C P+
Sbjct: 120 AGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHV 179
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C AG E++ + + G P+V+ Y L+ Y + A + + M
Sbjct: 180 YATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMD 239
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N S + ++I G F +F ++ G + Y AL++ G
Sbjct: 240 VNGCSPNVRTYTELISG-FCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQL 298
Query: 181 ERAARVLDEATKRGLFP 197
+ A R+L GL P
Sbjct: 299 DCAYRLLQSMENSGLVP 315
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 75/199 (37%), Gaps = 5/199 (2%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
++ SRM ARN ++ +I A+ G + + + + P+ + +
Sbjct: 61 ESFASRMP----ARNLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVG 116
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
YC AGL+ + F + G + + Y LL + +A + M + +
Sbjct: 117 YCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPD 176
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
V M+ G + E + EG+ + YNAL++ +G E A V
Sbjct: 177 PHVYATMVHG-LCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVF 235
Query: 188 DEATKRGLFPELFRHNKLV 206
+ G P + + +L+
Sbjct: 236 ERMDVNGCSPNVRTYTELI 254
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 95/239 (39%), Gaps = 29/239 (12%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ IL +M +G+ + ++ + ++ GR E+A + M PN T A++
Sbjct: 442 KKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICG 501
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK---SNR--------WDDA---- 112
Y GL ++ F+ + ++G P+ Y +LL + K SN W A
Sbjct: 502 YANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKY 561
Query: 113 -YGLLDEM----HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFY 167
+GLL+EM + I + + + + DE+ ++E + Y
Sbjct: 562 LHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIE-----MQSANLTPSEDVY 616
Query: 168 NALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
+++ L + A +D K G P+L + ++ S+ EG TA V+
Sbjct: 617 TSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISSL----CEEGSIQTAKQVF 671
>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 825
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 94/211 (44%), Gaps = 11/211 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +L+ M+ G+ N FN VI+A + G EA + M ++ C P+ T
Sbjct: 288 AGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDITT 347
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+++ C G ++E+ E ++ K G+LP+ Y L+ Y K + A G+L +
Sbjct: 348 YNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFRIA 407
Query: 120 ----HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
++ +S + G ++ GE D + V +K+ +G + YN L+ L
Sbjct: 408 EIGEKSDLVSYGAFIHGVVVAGEID------VALMVREKMMEKGVFPDAQIYNILMSGLC 461
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G +L E R + P+++ L+
Sbjct: 462 KKGRIPAMKLLLSEMLDRNVQPDVYVFATLI 492
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 8/181 (4%)
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
C P+ ++ YC G + + E+K G+LP+V Y L+ + K+ ++
Sbjct: 236 CVPHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVD 295
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
LL EM ++ +V +I E+ + E + ++ G G + YN ++
Sbjct: 296 QLLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAE-MLRRMAEMGCGPDITTYNIMIN- 353
Query: 174 LWCLGLR-ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
C G R E A +L++A +RGL P NK ++ +H + G Y S L ++ E
Sbjct: 354 FSCKGGRIEEADELLEKAKERGLLP-----NKFSYTPLMHAYCKKGDYVKASGMLFRIAE 408
Query: 233 M 233
+
Sbjct: 409 I 409
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 1/190 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ +LS M + V + F +I+ F + G +EAIK + + + DP A++
Sbjct: 470 KLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKG 529
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+C G + ++ E+ S P Y ++ Y K + A + +M ++
Sbjct: 530 FCKFGKMTDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPN 589
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+I G F +++ E VF + + Y L+ + G ERA +
Sbjct: 590 VITYTSLING-FCKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKAGKPERATSIF 648
Query: 188 DEATKRGLFP 197
+ G P
Sbjct: 649 ELMLMNGCLP 658
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 91/237 (38%), Gaps = 18/237 (7%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M E GV ++ +N ++ + GR EM P+ ++ + G
Sbjct: 440 KMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNG 499
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+DE+ + F+ I G+ P ++ Y ++ + K + DA L+EM++ +
Sbjct: 500 ELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYS 559
Query: 133 QMIKG---EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G + D S +M F ++ + + Y +L+ RA +V
Sbjct: 560 TVIDGYVKQHDMSSALKM----FGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSG 615
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV-WLNKMYEMFMMGEDLPQLAT 245
L P + + LV GG + A ++E+ +M LP AT
Sbjct: 616 MKSFDLVPNVVTYTTLV----------GGFFKAGKPERATSIFELMLMNGCLPNDAT 662
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 61/121 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + L+ M+ A + +++ VI+ + + A+K + +M K + PN T
Sbjct: 534 GKMTDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITY 593
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C + +++ F +KS ++P+V+ Y L+ + K+ + + A + + M
Sbjct: 594 TSLINGFCKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKAGKPERATSIFELMLM 653
Query: 122 N 122
N
Sbjct: 654 N 654
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 44/104 (42%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E I + GV +NA+I+ F + G+ +A+ EM V P+E T
Sbjct: 499 GELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTY 558
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
V+ Y + + + F ++ P+V+ Y L+ + K
Sbjct: 559 STVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCK 602
>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19440, chloroplastic; Flags: Precursor
Length = 838
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 1/178 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV+ + F I AF +GG+ EEA+K + +ME+ PN T V+ G DE+
Sbjct: 268 GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEA 327
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+++ G+ P+++ Y +L+ ++ R DAY +L EM V +I
Sbjct: 328 FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDS 387
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ S + +E + D + +G L YN L++ G + A R+L E G
Sbjct: 388 FIEAGSLNKAIE-IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGF 444
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E Q M V N+ +N +I A+ + GR A++ +M+ PN T ++
Sbjct: 640 EEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSL 699
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ V+E+K F+E++ G+ P+V Y L+ Y K + LL EMH+
Sbjct: 700 IKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSK-- 757
Query: 125 SNIH--QVTGQMIKGEFDDESN 144
N+H ++T ++ G + + N
Sbjct: 758 -NVHPNKITYTVMIGGYARDGN 778
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 1/197 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +E + S+M E+GVA N +FN VI+ GR++EA +M + +P T
Sbjct: 286 GGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLIT 345
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ A + ++ +E+ G P+V+ Y L+ + ++ + A + D M
Sbjct: 346 YSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV 405
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +S +IKG + E + ++ G+ + + +++ L +
Sbjct: 406 SKGLSLTSSTYNTLIKG-YCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMF 464
Query: 181 ERAARVLDEATKRGLFP 197
+ A R + E R + P
Sbjct: 465 DSALRFVGEMLLRNMSP 481
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 78/189 (41%), Gaps = 1/189 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G + S+N +I + +EA EM K P+ T ++ V+E+
Sbjct: 548 GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEA 607
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ + + K +G+LP V Y +++ K+ R ++ DEM + + V +I+
Sbjct: 608 IQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRA 667
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ M + + + +G Y +L++ + + E A + +E GL P
Sbjct: 668 -YCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 726
Query: 198 ELFRHNKLV 206
+F + L+
Sbjct: 727 NVFHYTALI 735
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 87/201 (43%), Gaps = 21/201 (10%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+G+ + +++ +I+ + R EE + + EM PN ++ YC +G +
Sbjct: 617 NGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSM 676
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVT---- 131
+ E +++K GI P+ Y L+ + +R ++A L +EM + N+ T
Sbjct: 677 ALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALID 736
Query: 132 -----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
GQM+K VE + +++ + Y ++ G A+R+
Sbjct: 737 GYGKLGQMVK-----------VECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRL 785
Query: 187 LDEATKRGLFPELFRHNKLVW 207
L+E ++G+ P+ + + ++
Sbjct: 786 LNEMREKGIVPDSITYKEFIY 806
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G++ NS ++ ++I+ R EEA + EM +PN A++ Y G
Sbjct: 684 MKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQ 743
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ + + +E+ S + P+ + Y +++ YA+ +A LL+EM I
Sbjct: 744 MVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGI 794
>gi|255661204|gb|ACU25771.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 426
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+KE ++++S M +GV ++ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFKEARSLISEMKTAGVXPDTVSYSTLLTMYVENQKFLEALSVFAEMREIKCSLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY + E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLDMAKEADKLFWSMRKIGIEPNVISYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N ++ + + E+A EM +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEMHNXGIEPNAITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNIHQVTGQMI 135
R NI + T I
Sbjct: 317 RPDNIPRDTAXHI 329
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 3/183 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+++++I + GR +E +M K C PN AV++ + A ++++ F +
Sbjct: 431 AYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNM 490
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQVTGQMIKGEFDDES 143
S G P+V+ Y L+ +K+ R+ +AY L+ EM H N+ +T ++
Sbjct: 491 VSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNM--ITYSLLMNGLCQGK 548
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
M ++ + +G+ ++ +N ++ L G E A ++ E +R P L HN
Sbjct: 549 KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHN 608
Query: 204 KLV 206
L+
Sbjct: 609 TLM 611
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Query: 10 ILSRMSES-GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
I RM E G S+N+++ A + +++EA ++ E + PN +T ++ +
Sbjct: 100 IFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKIS 159
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C D++KE + G P V Y L+ AK+ DA L DEM ++
Sbjct: 160 CRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDV 219
Query: 129 QVTGQMIKGEF 139
+I G F
Sbjct: 220 ACYNILIDGFF 230
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 94/256 (36%), Gaps = 43/256 (16%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L +M++ G N NAVI F + + E+A++ + M C P T
Sbjct: 443 GRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTY 502
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD----------- 110
+++ A E+ +E+ G P+++ Y +L+ + + D
Sbjct: 503 NTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALE 562
Query: 111 ------------------------DAYGLLDEMHTNR-ISNIHQVTGQMIKGEFDDESNW 145
DA L EM + + N+ VT + F ++
Sbjct: 563 KGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNL--VTHNTLMEGFYKVRDF 620
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
+ ++D + G + YN L+ L A L++A RG+ P +
Sbjct: 621 ERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLP-----TAI 675
Query: 206 VWSVDVHRMWEGGAYT 221
W++ V + + GA T
Sbjct: 676 TWNILVRAVLDNGALT 691
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 47 VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAK 105
+ +K +C P + L V+ Y + D++ + FQ + G P + Y LL +
Sbjct: 69 IRTQKCKC-PEDVAL-TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIE 126
Query: 106 SNRWDDAYGLLDEMHTNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGY 160
SN+WD+A T +S Q +IK +FD +++ ++++ +G+
Sbjct: 127 SNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAK--ELLNWMWE----QGF 180
Query: 161 GLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ Y L+ +L G A ++ DE +RG+ P++ +N L+
Sbjct: 181 SPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILI 226
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 8/200 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA--VLSV 67
+ M+E+GV+ + +N ++ + + GR EE ++ + MEK C RT+ + +L
Sbjct: 312 VYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC----RTVVSYNILIR 367
Query: 68 YCFAGL-VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
F VDE+ ++ + M Y +L+ K+ + A +L+E R
Sbjct: 368 GLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDL 427
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
MI G E V V D++ G NA++ E A R
Sbjct: 428 DTFAYSSMING-LCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRF 486
Query: 187 LDEATKRGLFPELFRHNKLV 206
+G FP + +N L+
Sbjct: 487 FGNMVSKGCFPTVVTYNTLI 506
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
V N S+N +I + G+F+E+ + + M+K + T ++ C +G +D +
Sbjct: 251 VYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGAT 310
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
++E+ +G+ P V+ Y +L Y ++ R ++ L
Sbjct: 311 RVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLEL 347
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 81/206 (39%), Gaps = 2/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +EC + M + G R S+N +I + + +EAI + + + C + T
Sbjct: 338 AGRIEECLELWKVMEKEG-CRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMT 396
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G ++++ +E ++ Y ++ + R D+ G+LD+M
Sbjct: 397 YGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMT 456
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ V +I G F S + F + +G + YN L+ L
Sbjct: 457 KHGCKPNPHVCNAVING-FVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERF 515
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A ++ E +G P + ++ L+
Sbjct: 516 SEAYALVKEMLHKGWKPNMITYSLLM 541
>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 711
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 91/211 (43%), Gaps = 1/211 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +A+ + +SG+ + ++NA+++ + + G ++A EMEK P+E T ++
Sbjct: 324 EAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLI 383
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
Y AG + ++ +E+++ + P+ + LLA Y W + +L EM + +
Sbjct: 384 DAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVK 443
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
Q +I F + FD++ EG +N L++ G A
Sbjct: 444 PDRQFYNVVID-TFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEE 502
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ + +RG P +N ++ S W+
Sbjct: 503 MFEAMERRGCLPCATTYNIMINSYGDQERWD 533
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 36/194 (18%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM G+ + ++N +I+ + GR A + + ME+ C P T +++ Y
Sbjct: 471 RMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQE 530
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
D+ K ++KS GILP+V+ + L+ VY KS R++DA L+EM +
Sbjct: 531 RWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKS----------- 579
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
G YNAL+ A GL E+A T
Sbjct: 580 -------------------------VGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTS 614
Query: 193 RGLFPELFRHNKLV 206
GL P L N L+
Sbjct: 615 DGLKPSLLALNSLI 628
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 61/119 (51%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L +M G+ N + +++ + + GRF +AI+ EM+ V P+ A++
Sbjct: 534 DMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALI 593
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ Y GL +++ F+ + S G+ PS++ L+ + + R +A+ +L M N +
Sbjct: 594 NAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGV 652
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 76/215 (35%), Gaps = 36/215 (16%)
Query: 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
N +I F + G A++ + TL +++S +G E++ F+E++
Sbjct: 275 NDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEAEALFEELRQ 334
Query: 87 SGILPSVMCYCMLLAVYAKS-----------------------------------NRWDD 111
SGI P Y LL Y K+ RW+
Sbjct: 335 SGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWES 394
Query: 112 AYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
A +L EM T + V +++ G + D WQ V ++ G +FYN ++
Sbjct: 395 ARIVLKEMETGDVQPNSFVFSRLLAG-YRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVI 453
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ + A D G+ P+ N L+
Sbjct: 454 DTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLI 488
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 77/185 (41%), Gaps = 1/185 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G + ++N +I ++ R+++ + +M+ PN T ++ VY +G
Sbjct: 507 MERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGR 566
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+++ E +E+KS G+ PS Y L+ YA+ + A M ++ +
Sbjct: 567 FNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNS 626
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I +D + + V + G + Y L++AL + ++ V +E
Sbjct: 627 LINAFGEDRRDAEAFA-VLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPGVYEEMIMS 685
Query: 194 GLFPE 198
G P+
Sbjct: 686 GCKPD 690
>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 1/178 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV+ + F I AF +GG+ EEA+K + +ME+ PN T V+ G DE+
Sbjct: 255 GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEA 314
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+++ G+ P+++ Y +L+ ++ R DAY +L EM V +I
Sbjct: 315 FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDS 374
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ S + +E + D + +G L YN L++ G + A R+L E G
Sbjct: 375 FIEAGSLNKAIE-IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGF 431
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E Q M V N+ +N +I A+ + GR A++ +M+ PN T ++
Sbjct: 627 EEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSL 686
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ V+E+K F+E++ G+ P+V Y L+ Y K + LL EMH+
Sbjct: 687 IKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSK-- 744
Query: 125 SNIH--QVTGQMIKGEFDDESN 144
N+H ++T ++ G + + N
Sbjct: 745 -NVHPNKITYTVMIGGYARDGN 765
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 1/197 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +E + S+M E+GVA N +FN VI+ GR++EA +M + +P T
Sbjct: 273 GGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLIT 332
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ A + ++ +E+ G P+V+ Y L+ + ++ + A + D M
Sbjct: 333 YSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV 392
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +S +IKG + E + ++ G+ + + +++ L +
Sbjct: 393 SKGLSLTSSTYNTLIKG-YCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMF 451
Query: 181 ERAARVLDEATKRGLFP 197
+ A R + E R + P
Sbjct: 452 DSALRFVGEMLLRNMSP 468
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 78/189 (41%), Gaps = 1/189 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G + S+N +I + +EA EM K P+ T ++ V+E+
Sbjct: 535 GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEA 594
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ + + K +G+LP V Y +++ K+ R ++ DEM + + V +I+
Sbjct: 595 IQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRA 654
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ M + + + +G Y +L++ + + E A + +E GL P
Sbjct: 655 -YCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 713
Query: 198 ELFRHNKLV 206
+F + L+
Sbjct: 714 NVFHYTALI 722
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 87/201 (43%), Gaps = 21/201 (10%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+G+ + +++ +I+ + R EE + + EM PN ++ YC +G +
Sbjct: 604 NGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSM 663
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVT---- 131
+ E +++K GI P+ Y L+ + +R ++A L +EM + N+ T
Sbjct: 664 ALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALID 723
Query: 132 -----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
GQM+K VE + +++ + Y ++ G A+R+
Sbjct: 724 GYGKLGQMVK-----------VECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRL 772
Query: 187 LDEATKRGLFPELFRHNKLVW 207
L+E ++G+ P+ + + ++
Sbjct: 773 LNEMREKGIVPDSITYKEFIY 793
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G++ NS ++ ++I+ R EEA + EM +PN A++ Y G
Sbjct: 671 MKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQ 730
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ + + +E+ S + P+ + Y +++ YA+ +A LL+EM I
Sbjct: 731 MVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGI 781
>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS+M E+ A N + +I+ + + +EA K + ME+ C PN T A++ +
Sbjct: 737 VLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFG 796
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
AG VD+ E F+E+ S G P+ + Y +L+ + D+AY LL+EM
Sbjct: 797 KAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEM 846
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ M E G N ++ A+I+ F + G+ ++ ++ + EM C PN T ++
Sbjct: 768 EAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLI 827
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+ C G +DE+ +E+K + V YC ++ Y + + + GLL+E+ N
Sbjct: 828 NHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKR--EFILSLGLLEEVEKN 882
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 79/201 (39%), Gaps = 5/201 (2%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
LS + + N+ +N +I + FEEA+ M C PN +T +L
Sbjct: 296 LSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLN 355
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
+ K + + G PS + L+ Y KS+ + AY LL +M + V
Sbjct: 356 KKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVV 415
Query: 131 TGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+I GE +++ E ++++ G L + L G E+A +
Sbjct: 416 YNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYK 475
Query: 186 VLDEATKRGLFPELFRHNKLV 206
V+ E G P+ +++++
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVI 496
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
G+FE+A K EM P+ T V+ C A V+ + F+E+K +G++P V Y
Sbjct: 468 GKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTY 527
Query: 97 CMLLAVYAKSNRWDDAYGLLDEM 119
+L+ ++K+ A+ LDEM
Sbjct: 528 TILIDCFSKAGIIKQAHNWLDEM 550
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 86/208 (41%), Gaps = 7/208 (3%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
C+ ILS M G + FN+++ A+ + F A K +MEK C P ++
Sbjct: 362 CKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIG 421
Query: 67 VYCFAG------LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
C G + +++ + E+ S+G + + + +++ AY ++ EM
Sbjct: 422 SICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMM 481
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N ++I G + S + ++F ++ G + Y L++ G+
Sbjct: 482 GNGFVPDTSTYSEVI-GFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGII 540
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWS 208
++A LDE + G P + + L+ +
Sbjct: 541 KQAHNWLDEMVRDGCEPTVVTYTTLIHA 568
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 81/189 (42%), Gaps = 9/189 (4%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N ++ A+++ + + ++A M C+PN +A++ +C A +DE++E F
Sbjct: 644 NVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVF 703
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG---- 137
++ G P+V Y L+ K R D +L +M N + + +MI G
Sbjct: 704 HKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKV 763
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
DE+ M+ + ++ C+ + Y A+++ G ++ + E +G P
Sbjct: 764 AKTDEAYKLML--MMEEKGCKP---NVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAP 818
Query: 198 ELFRHNKLV 206
+ L+
Sbjct: 819 NFVTYTVLI 827
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M +GV + ++ +I+ F + G ++A EM + C+P T ++ Y
Sbjct: 511 LFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYL 570
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
A V + E F+ + + G P+V+ Y L+ Y KS + A
Sbjct: 571 KAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKA 613
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 17/222 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ K+ L M G ++ +I A+ + + A + + M C PN T
Sbjct: 537 AGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVIT 596
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGIL----------------PSVMCYCMLLAVYA 104
A++ YC +G ++++ + + ++ + P+V+ Y L+
Sbjct: 597 YTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLC 656
Query: 105 KSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGM 164
K+++ DA LL+ M + V +I G F + + VF K+ GY +
Sbjct: 657 KAHKVKDARDLLETMFVDGCEPNTIVYDALIDG-FCKAAKLDEAQEVFHKMVEHGYNPNV 715
Query: 165 RFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
Y++L++ L+ + +VL + + P + + +++
Sbjct: 716 YTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMI 757
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 53/118 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ ++ M +G ++ +++ VI R E A + EM+ P+ T
Sbjct: 468 GKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTY 527
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ + AG++ ++ E+ G P+V+ Y L+ Y K+ + A L + M
Sbjct: 528 TILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELM 585
>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Glycine max]
Length = 664
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 4/214 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNER 59
GG E + M GV N +N ++ G EA+ MEK C PN
Sbjct: 330 GGRVGEGVGLWRVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVT 389
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T ++ + AG + + E + ++ + G+ P+V+ Y ++ V K++ +D AY L+D M
Sbjct: 390 TYSTLVHGFVKAGDLQGASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNM 449
Query: 120 HTNRISNIHQVTGQMIKGE-FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
T+ IKG W M V D++ G R YN LL+ L+ +
Sbjct: 450 ATDGCPPTVVTFNTFIKGLCCGGRVLWAM--RVVDQMQRYGCLPDTRTYNELLDGLFSVN 507
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
+ A ++ E +R + L +N +++ H
Sbjct: 508 ELKEACELIRELEERKVELNLVTYNTVMYGFSSH 541
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 106/257 (41%), Gaps = 43/257 (16%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ M G+ N ++N +++A + G+ + A K VEM K C P+ + V++
Sbjct: 166 AVYENMRGEGMEPNVFTYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAM 225
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI---- 124
C G V+E++E + + G++ +C ++ + + R + +GL+DEM N +
Sbjct: 226 CEDGRVEEAREVARRFGAEGVVS--VCNALICGL-CREGRVGEVFGLMDEMVGNGVDPNV 282
Query: 125 ----------SNIHQ------VTGQMI-KGEFDDESNWQ--MVEYVFDKLNCEGYGL--- 162
S++ + V G+MI +G + + M Y EG GL
Sbjct: 283 VSYSSVISWLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRV 342
Query: 163 ----GMR----FYNALLEALWCLGLRERAARVLDEATKRGLFPELF-RHNKLVWSVDVHR 213
G+R YN LL L C G A V K + F R N +S VH
Sbjct: 343 MVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEK-----DCFCRPNVTTYSTLVHG 397
Query: 214 MWEGGAYTAISVWLNKM 230
+ G S NKM
Sbjct: 398 FVKAGDLQGASEVWNKM 414
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 2/206 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ M +GV N S+++VI G E A+ +M + C PN T
Sbjct: 261 GRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLGKMIRRGCRPNVHTF 320
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ Y G V E ++ + G+ P+V+ Y LL S +A + M
Sbjct: 321 SSLMKGYFLGGRVGEGVGLWRVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEK 380
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKL-NCEGYGLGMRFYNALLEALWCLGLR 180
+ + T + F + Q V++K+ NC G + Y ++++ L +
Sbjct: 381 DCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKMVNC-GVRPNVVVYTSMVDVLCKNSMF 439
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
++A R++D G P + N +
Sbjct: 440 DQAYRLIDNMATDGCPPTVVTFNTFI 465
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 86/227 (37%), Gaps = 13/227 (5%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
++M GV N + ++++ + F++A + M C P T + C
Sbjct: 412 NKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCG 471
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131
G V + +++ G LP Y LL N +A L+ E+ ++ ++ VT
Sbjct: 472 GRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVE-LNLVT 530
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+ F + V V ++ G N ++ A LG A + LD T
Sbjct: 531 YNTVMYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQFLDRIT 590
Query: 192 K-RGLFPELFRHNKLVWS-----------VDVHRMWEGGAYTAISVW 226
+ L P++ H L+W V +++M G + I+ W
Sbjct: 591 AGKELCPDIIAHTSLLWGICNSLGIEEAIVYLNKMLNKGIFPNIATW 637
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 17/210 (8%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL +M + + DSF V+ +++ G + A+K + +++ C P + +L
Sbjct: 95 ILHQMKIERIPCSQDSFICVLNSYKNSGLGDRALKMFYRIKEFGCKPTVKIYNHLLD--- 151
Query: 70 FAGLVDESKEQFQEI-------KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
L+ ES +F I + G+ P+V Y +LL K+ + D A LL EM +
Sbjct: 152 --ALLGESGNKFHMIGAVYENMRGEGMEPNVFTYNVLLKALCKNGKLDGACKLLVEM-SK 208
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
R V+ + ++ + V + EG + NAL+ L G
Sbjct: 209 RGCVPDGVSYTTVVAAMCEDGRVEEAREVARRFGAEGV---VSVCNALICGLCREGRVGE 265
Query: 183 AARVLDEATKRGLFPELFRHNKLV-WSVDV 211
++DE G+ P + ++ ++ W DV
Sbjct: 266 VFGLMDEMVGNGVDPNVVSYSSVISWLSDV 295
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 9/186 (4%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N ++E + GR + Y +M C PN T +L C A +E++ F+ +
Sbjct: 19 SYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT----GQMIKGEFD 140
+ G P+V Y +L+A + + D+A LL+EM I HQ G ++ G
Sbjct: 79 AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEM----IDGGHQPNVVTYGSLLSGLCK 134
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
+ V+ +F ++ G YN L++ G A R+ +E ++G P +F
Sbjct: 135 MGKLKEAVD-LFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVF 193
Query: 201 RHNKLV 206
+N L+
Sbjct: 194 TYNSLL 199
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 8/209 (3%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G N+ ++ ++ + Q RFEEA + M C PN + +++ C
Sbjct: 43 MLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQK 102
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
VDE+ E E+ G P+V+ Y LL+ K + +A L M V
Sbjct: 103 VDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G F + + +F+++ +G + YN+LL G R + + ++
Sbjct: 163 LIDG-FSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQ 221
Query: 194 GLFPELFRHNKLVWS-------VDVHRMW 215
G P +F N L+ V+ HR++
Sbjct: 222 GCVPNIFTFNNLLDGFCKMGDMVEAHRLF 250
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + SRM G + +N +I+ F + G EA + + EM + C P T
Sbjct: 136 GKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTY 195
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++LS + G + F+++ G +P++ + LL + K +A+ L EM +
Sbjct: 196 NSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRS 255
Query: 122 -----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ +S + G KG+ E+ + E + G G + YN L++
Sbjct: 256 LGCPPDVVSYNTLMRGMCSKGK-PHEAQRLLREMIR-----SGVGPDIVSYNILIDGYSK 309
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A ++ E K GL P+ F ++ ++
Sbjct: 310 SGALDHAIKLFYEIPKSGLEPDAFSYSTII 339
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 90/203 (44%), Gaps = 1/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
++E +++ M+ G + N S++ +I +G + +EA + EM PN T +
Sbjct: 68 FEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGS 127
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+LS C G + E+ + F + G P + Y +L+ ++K +AY L +EM
Sbjct: 128 LLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKG 187
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
++ G F + + V+ +F + +G + +N LL+ +G A
Sbjct: 188 CIPTVFTYNSLLSG-FSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEA 246
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
R+ E G P++ +N L+
Sbjct: 247 HRLFLEMRSLGCPPDVVSYNTLM 269
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E Q +L M SGV + S+N +I+ + + G + AIK + E+ K +P+ +
Sbjct: 276 GKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSY 335
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ C AG V + F+++ ++G P L+ + R ++ L M
Sbjct: 336 STIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAM 393
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 3/183 (1%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+++++I + GR +E +M K C PN AV++ + A ++++ F +
Sbjct: 431 AYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNM 490
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIHQVTGQMIKGEFDDES 143
S G P+V+ Y L+ +K+ R+ +AY L+ EM H N+ +T ++
Sbjct: 491 VSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNM--ITYSLLMNGLCQGK 548
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
M ++ + +G+ ++ +N ++ L G E A ++ E +R P L HN
Sbjct: 549 KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHN 608
Query: 204 KLV 206
L+
Sbjct: 609 TLM 611
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Query: 10 ILSRMSES-GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
I RM E G S+N+++ A + +++EA ++ E + PN +T ++ +
Sbjct: 100 IFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKIS 159
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C D++KE + G P V Y L+ AK+ DA L DEM ++
Sbjct: 160 CRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDV 219
Query: 129 QVTGQMIKGEF 139
+I G F
Sbjct: 220 ACYNILIDGFF 230
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 47 VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAK 105
+ +K +C P + L V+ Y + D++ + FQ + G P + Y LL +
Sbjct: 69 IRTQKCKC-PEDVAL-TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIE 126
Query: 106 SNRWDDAYGLLDEMHTNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGY 160
SN+WD+A T +S Q +IK +FD +++ ++++ +G+
Sbjct: 127 SNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAK--ELLNWMWE----QGF 180
Query: 161 GLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ Y L+ +L G A ++ DE +RG+ P++ +N L+
Sbjct: 181 SPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILI 226
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 8/200 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA--VLSV 67
+ M+E+GV+ + +N ++ + + GR EE ++ + MEK C RT+ + +L
Sbjct: 312 VYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC----RTVVSYNILIR 367
Query: 68 YCFAGL-VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
F VDE+ ++ + M Y +L+ K+ + A +L+E R
Sbjct: 368 GLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDL 427
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
MI G E V V D++ G NA++ E A R
Sbjct: 428 DTFAYSSMING-LCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRF 486
Query: 187 LDEATKRGLFPELFRHNKLV 206
+G FP + +N L+
Sbjct: 487 FGNMVSKGCFPTVVTYNTLI 506
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
V N S+N +I + G+F+E+ + + M+K + T ++ C +G +D +
Sbjct: 251 VYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGAT 310
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
++E+ +G+ P V+ Y +L Y ++ R ++ L
Sbjct: 311 RVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLEL 347
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 81/206 (39%), Gaps = 2/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +EC + M + G R S+N +I + + +EAI + + + C + T
Sbjct: 338 AGRIEECLELWKVMEKEG-CRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMT 396
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G ++++ +E ++ Y ++ + R D+ G+LD+M
Sbjct: 397 YGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMT 456
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ V +I G F S + F + +G + YN L+ L
Sbjct: 457 KHGCKPNPHVCNAVING-FVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERF 515
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A ++ E +G P + ++ L+
Sbjct: 516 SEAYALVKEMLHKGWKPNMITYSLLM 541
>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
Length = 1435
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/277 (19%), Positives = 108/277 (38%), Gaps = 32/277 (11%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L ++ I M N ++ +++ +R G +A M++ +P T+
Sbjct: 1005 LREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMH 1064
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ Y AG E++ +KSS + S + Y + Y K+ ++ L EM +
Sbjct: 1065 ILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRD 1124
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR----------------- 165
+ HQV I+ E + + +C G+ L +R
Sbjct: 1125 GVEPDHQVWTCFIRAASLCEQTADAILLLKSLQDC-GFDLPIRLLTERTPSLLSEIANYL 1183
Query: 166 -------------FYNALLEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDV 211
F NA+ + LW R A+R+ A +R ++ + +FR + W D
Sbjct: 1184 EELEALEDSAALNFVNAVEDLLWAFECRATASRIFQLAVERSIYRDNVFRVAQKDWGADF 1243
Query: 212 HRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
++ G A +++WL+ M + + G + V+V
Sbjct: 1244 RKLSAGAALVGLTLWLDHMQDASLQGSPESPKSVVLV 1280
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 89/197 (45%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L + +SG+ + ++N +I A Q E+A+ + +M C P+ T A++SV+
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHG 339
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +E++ F+E+ G +P + Y LL +AK D +++ ++
Sbjct: 340 RCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKK-NE 398
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T + + + ++D++ G Y ++++L + A +VL++
Sbjct: 399 ITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLED 458
Query: 190 ATKRGLFPELFRHNKLV 206
T GL P L + L+
Sbjct: 459 MTDAGLKPTLIAFSALI 475
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 94/207 (45%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GLY++ +A+ M ++G DS N ++ A GR +E E++ + ++ T
Sbjct: 793 SGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKST 852
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +L + AG V E + + +K++G LP++ Y ++++ NR+ D ++ EM
Sbjct: 853 VLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEME 912
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ ++ + N+ V+ + G YN L+ ++C R
Sbjct: 913 GAGFKPDLAILNALL-NMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLI-VMYCRSFR 970
Query: 181 -ERAARVLDEATKRGLFPELFRHNKLV 206
E +L+E KRGL P+L + L+
Sbjct: 971 PEEGFTLLNEMGKRGLTPKLQSYKSLL 997
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 54/107 (50%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
++ ++G +N ++N +I + + GR + A+ Y EM + C P+ T ++
Sbjct: 388 QLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMN 447
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ E+ + +++ +G+ P+++ + L+ YAK R DA D M
Sbjct: 448 RIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCM 494
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 56/119 (47%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+++ + +++ M +G + NA++ + G F+ + Y + + +P+E T
Sbjct: 901 FRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNT 960
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ +YC + +E E+ G+ P + Y LLA AK+ + A + +EM +
Sbjct: 961 LIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSK 1019
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 96/230 (41%), Gaps = 37/230 (16%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE--SKEQFQE 83
FNA++ + + GRF++A + M DP+ + +++ +G + + + E
Sbjct: 224 FNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFE 283
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----------NRISNIHQVTGQ 133
++ SG+ P V+ Y L++ ++S+ +DA + ++M N + ++H G+
Sbjct: 284 VRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGK 343
Query: 134 MIKGE------------------------FDDESNWQMVEYVFDKLNCEGYGLGMRFYNA 169
+ E F E N VE+ ++L G+ YN
Sbjct: 344 AEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNT 403
Query: 170 LLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV-DVHRMWEGG 218
++ +G + A + DE G P+ + ++ S+ ++R+ E G
Sbjct: 404 MIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAG 453
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 70/189 (37%), Gaps = 38/189 (20%)
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
P R + VL V A ++E F G +V + ++ VYA+S R+DDA L
Sbjct: 186 PASRAVAVVLGVLGRARQDSIAEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDDARQL 243
Query: 116 LDEMHT----------NRISNIHQVTGQMIKGEFDD------------------------ 141
LD MH N + N +G + G D
Sbjct: 244 LDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISAC 303
Query: 142 --ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
SN + VF+ + + YNA++ G E A R+ E ++G P+
Sbjct: 304 SQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDA 363
Query: 200 FRHNKLVWS 208
+N L+++
Sbjct: 364 ITYNSLLYA 372
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 38/192 (19%)
Query: 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80
+N + + +I + F EA + + +M+ + + ++ E+++S YC G + +
Sbjct: 673 QNCNLYEYLITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRL 732
Query: 81 FQEIKSSGILPSVM-CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF 139
+ SGI +++ C +++ Y K W A L + + Q +
Sbjct: 733 MDDALQSGIPLNILSCRVIIIEAYGKIKLWQQAEIL--------VKGLRQAS-------- 776
Query: 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
G+ R +NAL+ A GL E+A V D K G P +
Sbjct: 777 ---------------------GIDRRIWNALIHAYAESGLYEKARAVFDNMIKTGPLPTV 815
Query: 200 FRHNKLVWSVDV 211
N ++ ++ V
Sbjct: 816 DSVNGMMRALIV 827
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GLY E +A+ G ++ ++ +I++ + R EA K +M P
Sbjct: 419 GLYDEMRAM-------GCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAF 471
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
A++ Y G +++ F + +SG+ P + Y ++L V+A+S
Sbjct: 472 SALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARS 516
>gi|410110131|gb|AFV61145.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rehmannii]
Length = 379
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++ M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 55 LFREARSLIGEMKTAGVMPNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 114
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 115 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 174
Query: 123 RI 124
I
Sbjct: 175 NI 176
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 243
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 244 SGVE-IDQILFQ 254
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 52/94 (55%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++ +IE R+ + +AI + +++ P+ A+++V+ A L E++ E+K
Sbjct: 8 YSNLIELSRKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMK 67
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 68 TAGVMPNTSSYSTLLTMYVENKKFLEALSVFSEM 101
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 160 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 219
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 220 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 279
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 280 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 330
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 331 KYANVVEVFDKMRGLGYFPD 350
>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Cucumis sativus]
gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Cucumis sativus]
Length = 536
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 1/208 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A M S + NS + N VI A + GR ++A + EM + PN + +++ Y
Sbjct: 224 AFYREMRRSRIYPNSYTLNLVICACCKLGRLDKANVVFEEMGTMGFSPNVASYNTLIAGY 283
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C GL+ + + ++ +G+ P V+ + L+ + K + +A L EM +S
Sbjct: 284 CNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTT 343
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+I G + N +M +F++++ + YNAL+ L G ++AA ++
Sbjct: 344 VTYNILING-YSKAGNCEMGNRLFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVR 402
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWE 216
E ++GL P + L++ V + E
Sbjct: 403 ELDEKGLVPNASTFSALIYGQCVQKQSE 430
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ MS V + ++NA+I + G+ ++A E+++ PN T A++ C
Sbjct: 365 LFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQC 424
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ + + ++ + S P + MLL+ + ++ +D A LL+EM
Sbjct: 425 VQKQSERAFQIYKSMIKSSFTPCDQTFRMLLSTFCENEDYDGAVQLLEEM 474
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 1/153 (0%)
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
CD + + + + + + F +K G LP+V L+ +R D A
Sbjct: 164 CDSSPHVFDLLFKTFAHLKKFRNASDTFCRMKDYGFLPTVESCNAYLSSLLNFSRGDIAL 223
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
EM +RI + T ++ VF+++ G+ + YN L+
Sbjct: 224 AFYREMRRSRIYP-NSYTLNLVICACCKLGRLDKANVVFEEMGTMGFSPNVASYNTLIAG 282
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
GL A ++ K G+ P++ N LV
Sbjct: 283 YCNKGLLSSAMKLRSVMEKNGVPPDVVTFNTLV 315
>gi|413917008|gb|AFW56940.1| plastid transcriptionally active 12-like protein [Zea mays]
Length = 600
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 81/170 (47%), Gaps = 1/170 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
YKE I +M +G+ + S++ +I+A+ + R EEA+ + EM P ++
Sbjct: 296 YKEVSNIYDQMQRAGLKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNI 355
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L + +GLV+E+ F+ ++ + P + Y ++ Y ++ + A + +
Sbjct: 356 LLDAFAISGLVEEANTVFRAMRRHRVEPDLCSYTTMVLAYVNASEMNGAEKFFRRIKEDG 415
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
+ V G ++KG + +N + V V++++ +G Y +++A
Sbjct: 416 LKPNVVVYGTLMKG-YSKLNNLEKVMRVYERMRIQGVEPNQTIYTTIMDA 464
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 1/166 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A+ M ++GV S+N +++AF G EEA + M + R +P+ + ++
Sbjct: 333 EALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVEEANTVFRAMRRHRVEPDLCSYTTMV 392
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
Y A ++ +++ F+ IK G+ P+V+ Y L+ Y+K N + + + M +
Sbjct: 393 LAYVNASEMNGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNLEKVMRVYERMRIQGVE 452
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
+ ++ + + S++ F ++ GY + N LL
Sbjct: 453 PNQTIYTTIMDAQGRN-SDFGNAVIWFKEMEARGYPPDQKAKNILL 497
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/211 (18%), Positives = 94/211 (44%), Gaps = 7/211 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM---EKVRCDPN 57
G Y++ +A+ RM SG + ++ ++++ +G +++EA + ++ ++ P+
Sbjct: 188 GKQYRKAEAVFRRMQTSGPQPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPD 247
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
++ ++ +Y AG ++++ F ++ GI S + + L++ + + + D
Sbjct: 248 QKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSF---ETEYKEVSNIYD 304
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+M + +IK + + VF+++ G + YN LL+A
Sbjct: 305 QMQRAGLKPDVVSYSLLIKA-YGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAIS 363
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWS 208
GL E A V + + P+L + +V +
Sbjct: 364 GLVEEANTVFRAMRRHRVEPDLCSYTTMVLA 394
>gi|255661142|gb|ACU25740.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 426
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV + S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 94 LFREARSLISEMRTAGVTPTTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCN 153
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 154 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 213
Query: 123 RI 124
I
Sbjct: 214 NI 215
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 163 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 222
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE+++ GI P+ + Y +++++ K + D A L ++ +
Sbjct: 223 NSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 282
Query: 122 NRISNIHQVTGQMI 135
+ + +I QV Q +
Sbjct: 283 SGV-DIDQVLYQTM 295
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 199 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYS 258
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ G +D + FQ+++SSG+ + Y ++ Y ++ A LL E+
Sbjct: 259 TIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 316
Query: 123 RISNI 127
R NI
Sbjct: 317 RPDNI 321
>gi|296083392|emb|CBI23347.3| unnamed protein product [Vitis vinifera]
Length = 451
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 18/205 (8%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
++M + GV + + N ++ + G E+A EM ++ PN T + YC
Sbjct: 48 NKMIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREMLEIGPSPNCATFNTFIKGYCLN 107
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--------HTNR 123
VD++ F + +SGI P+ + Y +L+ K DA LL+++ ++
Sbjct: 108 NNVDKALYLFSTMANSGIGPNKVTYNILIHALCKKGLLKDARKLLEKILDDDCGKETSDI 167
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVF--DKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I++ + G + KG+ MV+ + D++ G + + YN L+ +
Sbjct: 168 ITSTIFMDGCLKKGD--------MVQALVHWDEMLQRGTQIDVVAYNVLIHGFCLIQDMN 219
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R E KRGL P++F +N L+
Sbjct: 220 SAYRYFCEMFKRGLLPDIFTYNTLI 244
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ I+ M G ++ ++ VI Q R ++A + EM+KV +P+ T
Sbjct: 431 GKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTY 490
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL----- 116
++ +C AGL+++++ F E++S+G P+V+ Y LL Y KS + A +
Sbjct: 491 TILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVG 550
Query: 117 DEMHTNRISNIHQVTGQMIKGEF 139
D + N I+ + G GE
Sbjct: 551 DACYPNAITYSALIDGLCKAGEI 573
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 95/230 (41%), Gaps = 45/230 (19%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS+M + N ++ A+++ + G E+A+ MEK C PN T A++
Sbjct: 700 VLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLG 759
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLL----------------------------- 100
AG VD E F ++K+ G P+ + Y +L+
Sbjct: 760 KAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQ 819
Query: 101 ----AVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG-------EFDDESNWQMVE 149
V S R+ + GLL+EM ++ + I V G +I E E + +M+E
Sbjct: 820 GYRTTVQGFSKRFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMME 879
Query: 150 YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
V LN + + +L++AL E A + E +RG+ P+L
Sbjct: 880 -VSSSLNMASKDM----HTSLIQALCLSSQVEEAVALYSEMRRRGIVPDL 924
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 11/193 (5%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
++ N ++ A++ + + +A M C+PN+ +A++ +C G +D ++
Sbjct: 604 ISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQ 663
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQ 133
E F + G LPSV Y L+ K R D A +L +M + N ++ V G
Sbjct: 664 EVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGL 723
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
GE + N + + +G + Y AL++ L G + + + +
Sbjct: 724 CKTGETEKALN------LLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTK 777
Query: 194 GLFPELFRHNKLV 206
G P + L+
Sbjct: 778 GCAPNYVTYRILI 790
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + RM++ G + ++ ++I+ + GR + A+K +M K C+PN T A++
Sbjct: 663 QEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDG 722
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
C G +++ ++ G P+V+ Y L+ K+ + D L +M T
Sbjct: 723 LCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTK 777
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 1/150 (0%)
Query: 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
G+FE+A + EM + P+ T V++ C A VD++ FQE+K G+ P V Y
Sbjct: 431 GKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTY 490
Query: 97 CMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN 156
+L+ + K+ + A DEM + S ++ + +Q + +F ++
Sbjct: 491 TILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQAND-IFHRMV 549
Query: 157 CEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ Y+AL++ L G ++A V
Sbjct: 550 GDACYPNAITYSALIDGLCKAGEIQKACEV 579
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE---AVL 65
+L M A + + +I++F + GR E A++ + EM +V N + + +++
Sbjct: 837 GLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLI 896
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----YGLLDE 118
C + V+E+ + E++ GI+P + + L+ + N+W++A YG+ E
Sbjct: 897 QALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQE 953
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 62/253 (24%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY- 68
+ M + GV + ++ +I++F + G E+A + EM C PN T A+L Y
Sbjct: 474 LFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYL 533
Query: 69 -------------------------CFAGLVD-------------------------ESK 78
++ L+D ES
Sbjct: 534 KSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESD 593
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQ 133
F+ + I P+V+ Y L+ K+ + DA+ LLD M N+I V G
Sbjct: 594 FYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGF 653
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
GE D + VF ++ GY + Y +L++ ++ G + A +VL + K
Sbjct: 654 CKVGEIDS------AQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKD 707
Query: 194 GLFPELFRHNKLV 206
P + + +V
Sbjct: 708 SCNPNVVTYTAMV 720
>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
Length = 597
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 3/182 (1%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N +I+A+ Q + EA AY+ + + RC P E T +L YC +G + ++ E++
Sbjct: 175 YNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQ 234
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+GI P+ Y L K+ + A + M R Z MI ++N
Sbjct: 235 RNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMIN--VYGKANQ 292
Query: 146 QMVEY-VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
M VF ++ G + Y AL+ A GL E+A V +E + G P+++ +N
Sbjct: 293 PMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNA 352
Query: 205 LV 206
L+
Sbjct: 353 LM 354
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 3/202 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + ++S M +G+ + +NA ++ + E+A++ Y M+K RC N T
Sbjct: 221 GQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTY 280
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
+++VY A S F+E+KS G P++ Y L+ +A+ + A + +EM
Sbjct: 281 XLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 340
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+++ M + Q +F + G YN L++A GL
Sbjct: 341 AGHEPDVYAYNALM--EAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLH 398
Query: 181 ERAARVLDEATKRGLFPELFRH 202
+ A E ++G+ P + H
Sbjct: 399 QEAEAAFQELKQQGMRPTMKSH 420
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 68/121 (56%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL ++ + + M ++G + ++NA++EA+ + G + A + + ME + C+P+ +
Sbjct: 326 GLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASY 385
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + AGL E++ FQE+K G+ P++ + +LL+ +A+S ++ ++H
Sbjct: 386 NILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHK 445
Query: 122 N 122
+
Sbjct: 446 S 446
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL + I S M G + S+N +++AF + G +EA A+ E+++ P ++
Sbjct: 360 AGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKS 419
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+LS + +G V +E ++ SG+ P +L Y ++ R DD L M
Sbjct: 420 HMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAM 478
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK----VRCDPN 57
G C+ +++++ +SG+ ++ + NA++ A+ + GR ++ + + ME+ P+
Sbjct: 431 GNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPD 490
Query: 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
T +++ Y AG +D + F+ + + G+ V+ + + YA+ + + +
Sbjct: 491 TSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFE 550
Query: 118 EM 119
EM
Sbjct: 551 EM 552
>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 96/215 (44%), Gaps = 5/215 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + + SRM + G+A N + +I F + G ++ + Y +M+ V PN T +++
Sbjct: 160 QAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLI 219
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ YC G + + + F EI G+ + + Y +L+ + + A GLL+ M I+
Sbjct: 220 TEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHIN 279
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ ++ G + + + Y+ +KL G + YN L+ +G +
Sbjct: 280 PTTRTFNMLMDGLCNTGQLDKALSYL-EKLKLIGLCPTLVTYNILISGFSKVGNSSVVSE 338
Query: 186 VLDEATKRGLFPELFRH----NKLVWSVDVHRMWE 216
++ E RG+ P + N V S D+ + +E
Sbjct: 339 LVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYE 373
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 91/197 (46%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L++M GV+ N + +IEA + G ++A + M+ + N+ +++ +
Sbjct: 129 LLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFF 188
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + E +Q++K G+LP++ Y L+ Y + + A+ + DE+ ++ +
Sbjct: 189 KKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVA-CNA 247
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT ++ G + E + +++ R +N L++ L G ++A L++
Sbjct: 248 VTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEK 307
Query: 190 ATKRGLFPELFRHNKLV 206
GL P L +N L+
Sbjct: 308 LKLIGLCPTLVTYNILI 324
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 87/190 (45%), Gaps = 7/190 (3%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L ++ G+ ++N +I F + G + EME P++ T +++ +
Sbjct: 305 LEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVR 364
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLL-AVYAKSNRWDDA--YGLLDEMHTNRISNI 127
+ ++++ E F +K G++P Y +L+ + K N + + Y + EMH I
Sbjct: 365 SDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVI 424
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ MI G + ++++ ++++ +++ G + Y + ++ L G A R+L
Sbjct: 425 YNT---MINGYCKECNSYKALKFL-EEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLL 480
Query: 188 DEATKRGLFP 197
E T+ GL P
Sbjct: 481 KEMTEAGLKP 490
>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
Length = 630
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 15/216 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I+ RM G+ ++ AV++ + GR E+A K EM P+E AV++ +C
Sbjct: 288 IMRRMENEGIVPGLMTYGAVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFC 347
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR-ISNIH 128
+G VD + ++ + ++ + P+V+ Y ++ +A+S R +A L +EM + I NI
Sbjct: 348 KSGEVDRALMVWETMVAARVKPNVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIV 407
Query: 129 QVTGQMIKGEFDDE------SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ M++G F S W+ E + K+ C + Y+ L+ L +G +
Sbjct: 408 TYS-SMVRGYFHIANSSRALSTWE--EMI--KVGCVPTAIS---YSILISGLCDVGRLKD 459
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A V RG P+ + ++ + + M +GG
Sbjct: 460 AMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGMVDGG 495
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 85/206 (41%), Gaps = 2/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E A++ M GV ++++FN V++A + G A+K + M+ C T
Sbjct: 210 AGCVEEAVALVHEMVVDGVV-SAEAFNPVLKAMLRAGDVNGAVKLFRFMQLKGCTLTAVT 268
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L G + + +++ GI+P +M Y ++ K R +DA+ + EM
Sbjct: 269 YNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVVDGLVKCGRVEDAWKVAQEMG 328
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ V +I G F V++ + + Y+A+++ G
Sbjct: 329 GQGLAPSEFVFSAVITG-FCKSGEVDRALMVWETMVAARVKPNVVLYSAMIDGFARSGRM 387
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A ++ +E P + ++ +V
Sbjct: 388 TEAEKLFEEMVDAKCIPNIVTYSSMV 413
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G + S++ +I GR ++A+ + M C P+ +++ C +G+
Sbjct: 432 MIKVGCVPTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGM 491
Query: 74 VDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
VD F ++ + G P V+ Y +LL ++N A LL++M +++ + +T
Sbjct: 492 VDGGLRLFNDMLAKGDAKPDVISYNVLLDALIRTNDLPRAMDLLNQM-LDQMCDPDTITC 550
Query: 133 QMIKGEF 139
+ EF
Sbjct: 551 NIFLREF 557
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 11/200 (5%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L + G N+ S+N V++ R+E+A K EM + PN T ++S C
Sbjct: 245 LKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCR 304
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRIS 125
GLV+ + E +I G P+ + Y +L + K + D A ++ M + + +S
Sbjct: 305 RGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVS 364
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+T GE D + +++ + DK G + YN +++ L G E A
Sbjct: 365 YNTLLTALCRGGEVD--AAVELLHQLKDK----GCTPVLISYNTVIDGLTKAGKTEEALE 418
Query: 186 VLDEATKRGLFPELFRHNKL 205
+L+E +GL P++ ++ +
Sbjct: 419 LLNEMVTKGLQPDIITYSTI 438
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 3/202 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L M G + ++ ++EA + +++A+K EM C P+ T V++
Sbjct: 173 AVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGI 232
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNI 127
C G VD++ E + + S G P+ + Y ++L + RW+DA L+ EM R N+
Sbjct: 233 CQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNV 292
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
VT M+ + + D++ G YN +L A +RA +
Sbjct: 293 --VTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFV 350
Query: 188 DEATKRGLFPELFRHNKLVWSV 209
+ G +P++ +N L+ ++
Sbjct: 351 ELMVSSGCYPDIVSYNTLLTAL 372
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 8/184 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVE-MEKVRCDPNERT 60
GL + IL ++ + G NS S+N ++ AF + + + A+ A+VE M C P+ +
Sbjct: 306 GLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAM-AFVELMVSSGCYPDIVS 364
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L+ C G VD + E ++K G P ++ Y ++ K+ + ++A LL+EM
Sbjct: 365 YNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMV 424
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T + +T I E + F K+ G YNA+L LGL
Sbjct: 425 TKGLQP-DIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAIL-----LGLC 478
Query: 181 ERAA 184
+R A
Sbjct: 479 KRRA 482
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 89/203 (43%), Gaps = 1/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
YK+ +L M + G A + ++N V+ Q GR ++A++ + C+PN +
Sbjct: 203 YKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNI 262
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
VL C A +++++ E+ G P+V+ + ML++ + + A +LD++
Sbjct: 263 VLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYG 322
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ + ++ I F + + + G + YN LL AL G + A
Sbjct: 323 CTP-NSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAA 381
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+L + +G P L +N ++
Sbjct: 382 VELLHQLKDKGCTPVLISYNTVI 404
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 94/248 (37%), Gaps = 48/248 (19%)
Query: 6 ECQAILSRMSESGVARNSD-----------SFNAVIEAFRQGGRFEEAIKAYVEMEKVRC 54
C A++ ++ SG + S+NA++ + G+ + A + M
Sbjct: 92 PCAALIKKLCASGRTAEARRVLASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPM--- 148
Query: 55 DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYG 114
+P+ T ++ C G D + ++ G +P V+ Y +LL K + + A
Sbjct: 149 EPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVK 208
Query: 115 LLDEMH-----TNRISNIHQVTGQMIKGEFDD-------------ESN------------ 144
LLDEM + ++ V G +G DD E N
Sbjct: 209 LLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLC 268
Query: 145 ----WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
W+ E + +++ +G + +N L+ L GL E A +LD+ K G P
Sbjct: 269 TAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSL 328
Query: 201 RHNKLVWS 208
+N ++ +
Sbjct: 329 SYNPILHA 336
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +L ++ + G S+N VI+ + G+ EEA++ EM P+ T
Sbjct: 375 GGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIIT 434
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ S C G ++E+ + F +++ GI P+ + Y +L K A L M
Sbjct: 435 YSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMV 494
Query: 121 TN 122
+N
Sbjct: 495 SN 496
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E +L+ M G+ + +++ + + GR EEAIKA+ +++ + PN
Sbjct: 410 AGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVL 469
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
A+L C + + F + S+G +P+ Y +L+
Sbjct: 470 YNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILI 509
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E ++ + G+ N+ +NA++ + AI + M C PNE T
Sbjct: 446 GRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTY 505
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGIL 90
++ + GLV E++E E+ S G++
Sbjct: 506 TILIEGLAYEGLVKEAREMMAELCSRGVV 534
>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
Length = 722
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + M G+ ++NA+I Q G+ E A +VEM + P+ T
Sbjct: 322 GFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITY 381
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
++L+ YC AG + E+ F +++ +G+ P+V+ Y +L+ Y + ++A L +EM
Sbjct: 382 NSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVE 441
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ ++ T ++KG + + M FD++ +G YN + A LG
Sbjct: 442 QGCLPDVCTYT-ILMKGSH-NACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAI 499
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+A R+ + G+ + +N L+
Sbjct: 500 AKAFRLREVMMLEGISSDTVTYNILI 525
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 1/150 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E + M G+A ++ ++ I A+ + G A + +M + +PNE T
Sbjct: 567 GLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITY 626
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G + F E+ G++P+ Y +L+ K W+DA EMH
Sbjct: 627 NVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQ 686
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYV 151
N I + + KG FD+ +EY+
Sbjct: 687 NGIHPDYLTHKALFKG-FDEGHMNHAIEYL 715
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 36/189 (19%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G++ ++ ++N +I+ + G +A ++M P+ T ++ +C GL+ E+
Sbjct: 513 GISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREA 572
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
++ F+++ S G+ PS + Y + + Y + AYG
Sbjct: 573 RKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYG----------------------- 609
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
W F K+ EG YN L+ AL G + A R E +RGL P
Sbjct: 610 -------W------FRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVP 656
Query: 198 ELFRHNKLV 206
+ + L+
Sbjct: 657 NKYTYTLLI 665
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 36/185 (19%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
+S ++N +I G ++A +EME P T A++ +G V+ ++ +F
Sbjct: 307 SSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKF 366
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
E+++ G+ P V+ Y LL Y K+ +A L
Sbjct: 367 VEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLL-------------------------- 400
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
F L G + YN L++ LG E A R+ +E ++G P++
Sbjct: 401 ----------FGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCT 450
Query: 202 HNKLV 206
+ L+
Sbjct: 451 YTILM 455
>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS+M E+ A N + +I+ + + +EA K + ME+ C PN T A++ +
Sbjct: 737 VLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFG 796
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
AG VD+ E F+E+ S G P+ + Y +L+ + D+AY LL+EM
Sbjct: 797 KAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEM 846
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ M E G N ++ A+I+ F + G+ ++ ++ + EM C PN T ++
Sbjct: 768 EAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLI 827
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+ C G +DE+ +E+K + V YC ++ Y + + + GLL+E+ N
Sbjct: 828 NHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKR--EFILSLGLLEEVEKN 882
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 79/201 (39%), Gaps = 5/201 (2%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
LS + + N+ +N +I + FEEA+ M C PN +T +L
Sbjct: 296 LSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLN 355
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
+ K + + G PS + L+ Y KS+ + AY LL +M + V
Sbjct: 356 KKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVV 415
Query: 131 TGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+I GE +++ E ++++ G L + L G E+A +
Sbjct: 416 YNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYK 475
Query: 186 VLDEATKRGLFPELFRHNKLV 206
V+ E G P+ +++++
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVI 496
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
G+FE+A K EM P+ T V+ C A V+ + F+E+K +G++P V Y
Sbjct: 468 GKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTY 527
Query: 97 CMLLAVYAKSNRWDDAYGLLDEM 119
+L+ ++K+ A+ LDEM
Sbjct: 528 TILIDCFSKAGIIKQAHNWLDEM 550
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 86/208 (41%), Gaps = 7/208 (3%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
C+ ILS M G + FN+++ A+ + F A K +MEK C P ++
Sbjct: 362 CKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIG 421
Query: 67 VYCFAG------LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
C G + +++ + E+ S+G + + + +++ AY ++ EM
Sbjct: 422 SICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMM 481
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N ++I G + S + ++F ++ G + Y L++ G+
Sbjct: 482 GNGFVPDTSTYSEVI-GFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGII 540
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWS 208
++A LDE + G P + + L+ +
Sbjct: 541 KQAHNWLDEMVRDGCEPTVVTYTTLIHA 568
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 97/241 (40%), Gaps = 26/241 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M +GV + ++ +I+ F + G ++A EM + C+P T ++ Y
Sbjct: 511 LFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYL 570
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A V + E F+ + + G P+V+ Y L+ Y KS + A + M + ++I
Sbjct: 571 KAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGD--ADIPD 628
Query: 130 VTGQM-IKGEFDDESNWQMVEYVFDKLNCEGYGL-----------------GMRFYNALL 171
V IK ++ N + D L C+ + + Y+AL+
Sbjct: 629 VDMYFKIKNNVAEKPNVVTYGALVDGL-CKAHKVKDARDLLETMFVDGCEPNTIVYDALI 687
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMY 231
+ + A V + +RG P ++ ++ L + R+++ + L+KM
Sbjct: 688 DGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSL-----IDRLFKDKRLDLVLKVLSKML 742
Query: 232 E 232
E
Sbjct: 743 E 743
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 81/189 (42%), Gaps = 9/189 (4%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N ++ A+++ + + ++A M C+PN +A++ +C A +DE++E F
Sbjct: 644 NVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVF 703
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG---- 137
++ G P+V Y L+ K R D +L +M N + + +MI G
Sbjct: 704 HKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKV 763
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
DE+ M+ + ++ C+ + Y A+++ G ++ + E +G P
Sbjct: 764 AKTDEAYKLML--MMEEKGCKP---NVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAP 818
Query: 198 ELFRHNKLV 206
+ L+
Sbjct: 819 NFVTYTVLI 827
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 17/222 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+ K+ L M G ++ +I A+ + + A + + M C PN T
Sbjct: 537 AGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVIT 596
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGIL----------------PSVMCYCMLLAVYA 104
A++ YC +G ++++ + + ++ + P+V+ Y L+
Sbjct: 597 YTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLC 656
Query: 105 KSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGM 164
K+++ DA LL+ M + V +I G F + + VF K+ GY +
Sbjct: 657 KAHKVKDARDLLETMFVDGCEPNTIVYDALIDG-FCKAAKLDEAQEVFHKMVERGYNPNV 715
Query: 165 RFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
Y++L++ L+ + +VL + + P + + +++
Sbjct: 716 YTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMI 757
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 53/118 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ ++ M +G ++ +++ VI R E A + EM+ P+ T
Sbjct: 468 GKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTY 527
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ + AG++ ++ E+ G P+V+ Y L+ Y K+ + A L + M
Sbjct: 528 TILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELM 585
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--EKVRCDPNERTLEAVLS 66
+L + ++G A + +I+ F + GR E A++ + E+ + + +++
Sbjct: 874 GLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIY 933
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ +A +D + E F ++ G++P + + LL + RW++A L D +
Sbjct: 934 SFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSL 986
>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
Length = 378
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E +I M + G A ++ ++NAV++ F + G+ ++A +A EM+ P T
Sbjct: 72 AGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVAT 131
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ +DE+ F+E KS GI +V+ Y L+ + K R D+AY +L+EM
Sbjct: 132 YGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEM 190
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 40/207 (19%)
Query: 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
GR E+ K + EM + C P+ L + AG V++ + F++IK G LP V Y
Sbjct: 3 GRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSY 62
Query: 97 CMLL--------------------------------AV---YAKSNRWDDAYGLLDEMHT 121
+L+ AV + KS + D AY L+EM
Sbjct: 63 SILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKV 122
Query: 122 NRISNIHQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ G +I G + D M +F++ +G L + Y++L++ +G
Sbjct: 123 KHVPPTVATYGSIIDGLAKIDRLDEAYM---LFEEAKSKGIELNVIVYSSLIDGFGKVGR 179
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A +L+E K+GL P ++ N L+
Sbjct: 180 IDEAYLILEEMMKKGLAPNVYTWNSLM 206
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 3/186 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E IL M + G+A N ++N++++A + EA+ + M++++C PN T
Sbjct: 178 GRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTY 237
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C +++ +QE++ G++P+V+ Y +++ AK DA L +
Sbjct: 238 SILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKA 297
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEY-VFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N +I+G +N + Y VF++ G + ++ +LL+AL
Sbjct: 298 NGGIPDAASFNALIEGM--SHANRAIEAYHVFEETRLRGCRINVKACISLLDALNKAECI 355
Query: 181 ERAARV 186
E+AA V
Sbjct: 356 EQAAVV 361
>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 512
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 95/211 (45%), Gaps = 8/211 (3%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE +M + G S FN +++ + +A K + +M+K R +P+ ++ +
Sbjct: 181 KEAITAFHKMEDYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKKRFEPDIKSYTIL 240
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L + + E + E+K G P V+ Y +++ Y K+ ++D+A +EM
Sbjct: 241 LEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGIIINAYCKAKKYDEAVRFFNEMEQRNC 300
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERA 183
+ +I G ++ +E+ F++ G+ L YNAL+ A +C R E A
Sbjct: 301 KPSPHIFCSLINGLGSEKKLNDALEF-FERSKSSGFPLEAPTYNALVGA-YCWSQRMEDA 358
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214
+ +DE +G+ P N + + +H +
Sbjct: 359 FKTVDEMRSKGIGP-----NARTYDIILHHL 384
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 95/201 (47%), Gaps = 6/201 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + G + ++ +I A+ + +++EA++ + EME+ C P+ ++++
Sbjct: 256 VYGEMKDEGFEPDVVAYGIIINAYCKAKKYDEAVRFFNEMEQRNCKPSPHIFCSLINGLG 315
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
++++ E F+ KSSG Y L+ Y S R +DA+ +DEM + I +
Sbjct: 316 SEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAFKTVDEMRSKGIGPNAR 375
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLD 188
++ + + E V+ K++CE + Y ++ ++C R + A ++ D
Sbjct: 376 TYDIILHHLIRMQRTKEAYE-VYQKMSCEP---TVSTYEIMVR-MFCNKERLDMAIKIWD 430
Query: 189 EATKRGLFPELFRHNKLVWSV 209
E +G+ P + + L+ ++
Sbjct: 431 EMKGKGVLPGMHMFSSLITAL 451
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+ N+ +++ ++ + R +EA + Y +K+ C+P T E ++ ++C
Sbjct: 365 MRSKGIGPNARTYDIILHHLIRMQRTKEAYEVY---QKMSCEPTVSTYEIMVRMFCNKER 421
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+D + + + E+K G+LP + + L+ N+ D+A +EM
Sbjct: 422 LDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEM 467
>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
Length = 607
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 117/262 (44%), Gaps = 28/262 (10%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM--------EKVR 53
GL + ++L+ M+E G+ N ++NA+I+AF + E +M + VR
Sbjct: 276 GLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDDSEVGDMGIVGVYGGQIVR 335
Query: 54 -CDPNERTLEAVLSVYCFAGLVDESKEQF------QEIKSSGILPSVMCYCMLLAVYAKS 106
+P R + V + S+E F Q++ G+ P+V+ + +L ++
Sbjct: 336 VANPVSRGGRSATDVR-----MRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRC 390
Query: 107 NRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF 166
N ++DA LL+++ + ++ V ++ G W + +F++L F
Sbjct: 391 NSFEDAALLLEQLRLFD-NFVYGVAYGLLVGS---REVWSQAQSLFNQLGRMDSPTSSAF 446
Query: 167 YNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
YNAL + LW G R +A +V+ E R ++ + + +D+H M G A + W
Sbjct: 447 YNALTDVLWHFGQRRKAQQVVFEGINRRVWENTWGE----FCLDLHLMSCGAAQAMVHAW 502
Query: 227 LNKMYEMFMMGEDLPQLATVVV 248
L + + G +P+ +++
Sbjct: 503 LLNVRSIVFEGRAMPEFLSILT 524
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 101/232 (43%), Gaps = 6/232 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ +A+ M G+ R+ ++N I+A + G E A++ ++ME PN T
Sbjct: 66 GHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTY 125
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y +E+ + +++KS I +CY LLA+Y K+ ++ + + DEM
Sbjct: 126 STLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEE 185
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I +I G + + +V + + G + Y+ L++ G+
Sbjct: 186 LGIEKDTVTYNSLING-YGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHG 244
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
A V + + GL P++ +++S + + + G LN M EM
Sbjct: 245 DAFNVYLDFKESGLKPDV-----VLFSSFIDTLAKNGLIEWALSLLNDMTEM 291
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G+ + +FN+++ A + G E+A + EM + + T + C G
Sbjct: 42 QMLKDGLCPDRKTFNSLLAACSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCG 101
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++ + + ++++ G+ P+V+ Y L+ Y+K ++++A L ++M + RI + +V
Sbjct: 102 NMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRI-QLDRVCY 160
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+ + + + V D++ G YN+L+ G + + ++ + K
Sbjct: 161 NTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRK 220
Query: 193 RGLFPELFRHNKLV 206
RG+ P + ++ L+
Sbjct: 221 RGVAPSVLTYSTLI 234
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/97 (18%), Positives = 47/97 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M + GVA + +++ +I+ + + G +A Y++ ++ P+ + +
Sbjct: 214 LVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLA 273
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
GL++ + ++ GI P+V+ Y ++ + KS
Sbjct: 274 KNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKS 310
>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 671
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 6/186 (3%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N+ +NA ++ R+E+ + VEM + C PNE T + S C GLVD + E
Sbjct: 313 NTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVL 372
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR-ISNIHQVTGQMIKGEFD 140
+++ G P + Y L+ +++ R DDA LL+ M + + + + + + E
Sbjct: 373 EQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSMPCSPDVISFNAALKGLCRAE-- 430
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
W E + ++ E L +N L+++L G A V ++ K G P++
Sbjct: 431 ---RWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIV 487
Query: 201 RHNKLV 206
++ L+
Sbjct: 488 TYSSLI 493
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 10/201 (4%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L+ ++ VA ++ ++N V+ ++E+A EM + C PNE T + +C
Sbjct: 200 LALIASMPVAPDTYTYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQ 259
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--HTNRISNIH 128
GL+D + + + G P V+ Y L+ +++ R DDA LL+ M N I
Sbjct: 260 NGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLNGMLCKPNTICYNA 319
Query: 129 QVTGQMIKGEFDDESNWQMVEYVF-DKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ G I ++D +VE V D L E ++ L L GL + A VL
Sbjct: 320 ALKGLCIAQRWEDVGQL-IVEMVRKDCLPNEAT------FSMLTSCLCQNGLVDCAMEVL 372
Query: 188 DEATKRGLFPELFRHNKLVWS 208
++ K G P+ +N L++S
Sbjct: 373 EQMHKYGCRPDAVIYNTLIYS 393
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+NAV++ + R+E+A + M + C PNE T +++ C GLVD + E F+++
Sbjct: 521 YNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMP 580
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G P + Y L+ +++ R DDA LL M
Sbjct: 581 KYGSTPDIFTYNALINGFSEQGRLDDARRLLSTM 614
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 39/182 (21%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+FN +I++ Q GR AI+ + +M K C P+ T ++++ GLV+ + E FQ +
Sbjct: 453 TFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSM 512
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
P + Y +L ++ RW+DA L+ M + +++T
Sbjct: 513 PCK---PDIFGYNAVLKGLCRAARWEDAGELISNM-ARKDCPPNEIT------------- 555
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+N L+ +L GL +RA V ++ K G P++F +N
Sbjct: 556 ----------------------FNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNA 593
Query: 205 LV 206
L+
Sbjct: 594 LI 595
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 7/195 (3%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N +F+ + Q G + A++ +M K C P+ ++ + G VD++ +
Sbjct: 348 NEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLL 407
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+ S P V+ + L ++ RWDDA L+ +M I +I +
Sbjct: 408 NSMPCS---PDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQN 464
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
+E VF+++ G + Y++L+ L GL E A + + P++F
Sbjct: 465 GRVNNAIE-VFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSMPCK---PDIFG 520
Query: 202 HNKLVWSVDVHRMWE 216
+N ++ + WE
Sbjct: 521 YNAVLKGLCRAARWE 535
>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
Length = 834
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 117/280 (41%), Gaps = 35/280 (12%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y+ + M +G + +++ V+E G +EA + EM++ P+E
Sbjct: 494 YQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGL 553
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---- 119
++ ++ AG V+++ E +Q + +G+ P+V LL+ + + NR DAY LL M
Sbjct: 554 LVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSMLNLG 613
Query: 120 -------HTNRIS---------------NIHQVTGQ--------MIKGEFDDESNWQMVE 149
+T +S + VTG + D ++ V
Sbjct: 614 LNPSLQTYTLLLSCCTEARSPYDMGCYCELMSVTGHPAHMFLSSLPSAGPDGQNVRHHVS 673
Query: 150 YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH-NKLVWS 208
D ++ E +A+++ L GL+E A V + A +R ++P+ + + W
Sbjct: 674 KFLDMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEIAAQRNVYPDAVKEKSSCYWL 733
Query: 209 VDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
+++H M EG A TA+S L ++ +P +V
Sbjct: 734 INLHVMSEGTAVTALSRTLAWFRRQMLVSGVIPSRIDIVT 773
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 96/212 (45%), Gaps = 7/212 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M G ++N +I ++ + +A++ + +M+K C+P+ T ++ ++
Sbjct: 360 LLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHA 419
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIH 128
AG ++ + E +Q ++++G+ P Y +++ K+ A L EM + N+
Sbjct: 420 KAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNL- 478
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT ++ N+Q ++ + G+ Y+ ++E L G + A +
Sbjct: 479 -VTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFS 537
Query: 189 EATKRGLFPELFRHNKLV--W--SVDVHRMWE 216
E ++ P+ + LV W + +V + WE
Sbjct: 538 EMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWE 569
>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
Length = 814
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 1/178 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV+ + F I AF +GG+ EEA+K + +ME+ PN T V+ G DE+
Sbjct: 244 GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEA 303
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+++ G+ P+++ Y +L+ ++ R DAY +L EM V +I
Sbjct: 304 FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDS 363
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ S + +E + D + +G L YN L++ G + A R+L E G
Sbjct: 364 FIEAGSLNKAIE-IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGF 420
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E Q M V N+ +N +I A+ + GR A++ +M+ PN T ++
Sbjct: 616 EEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSL 675
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ V+E+K F+E++ G+ P+V Y L+ Y K + LL EMH+
Sbjct: 676 IKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSK-- 733
Query: 125 SNIH--QVTGQMIKGEFDDESN 144
N+H ++T ++ G + + N
Sbjct: 734 -NVHPNKITYTVMIGGYARDGN 754
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +E + S+M E+GVA N +FN VI+ GR++EA +M + +P T
Sbjct: 262 GGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLIT 321
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ A + ++ +E+ G P+V+ Y L+ + ++ + A + D M
Sbjct: 322 YSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV 381
Query: 121 TNRISNIHQVTGQMIKG 137
+ +S +IKG
Sbjct: 382 SKGLSLTSSTYNTLIKG 398
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 78/189 (41%), Gaps = 1/189 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G + S+N +I + +EA EM K P+ T ++ V+E+
Sbjct: 524 GCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEA 583
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ + + K +G+LP V Y +++ K+ R ++ DEM + + V +I+
Sbjct: 584 IQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRA 643
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ M + + + +G Y +L++ + + E A + +E GL P
Sbjct: 644 -YCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 702
Query: 198 ELFRHNKLV 206
+F + L+
Sbjct: 703 NVFHYTALI 711
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 87/201 (43%), Gaps = 21/201 (10%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+G+ + +++ +I+ + R EE + + EM PN ++ YC +G +
Sbjct: 593 NGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSM 652
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVT---- 131
+ E +++K GI P+ Y L+ + +R ++A L +EM + N+ T
Sbjct: 653 ALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALID 712
Query: 132 -----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
GQM+K VE + +++ + Y ++ G A+R+
Sbjct: 713 GYGKLGQMVK-----------VECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRL 761
Query: 187 LDEATKRGLFPELFRHNKLVW 207
L+E ++G+ P+ + + ++
Sbjct: 762 LNEMREKGIVPDSITYKEFIY 782
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G++ NS ++ ++I+ R EEA + EM +PN A++ Y G
Sbjct: 660 MKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQ 719
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ + + +E+ S + P+ + Y +++ YA+ +A LL+EM I
Sbjct: 720 MVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGI 770
>gi|359495888|ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g24830-like [Vitis vinifera]
Length = 580
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 18/205 (8%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
++M + GV + + N ++ + G E+A EM ++ PN T + YC
Sbjct: 155 NKMIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREMLEIGPSPNCATFNTFIKGYCLN 214
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--------HTNR 123
VD++ F + +SGI P+ + Y +L+ K DA LL+++ ++
Sbjct: 215 NNVDKALYLFSTMANSGIGPNKVTYNILIHALCKKGLLKDARKLLEKILDDDCGKETSDI 274
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVF--DKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I++ + G + KG+ MV+ + D++ G + + YN L+ +
Sbjct: 275 ITSTIFMDGCLKKGD--------MVQALVHWDEMLQRGTQIDVVAYNVLIHGFCLIQDMN 326
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R E KRGL P++F +N L+
Sbjct: 327 SAYRYFCEMFKRGLLPDIFTYNTLI 351
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + +I M +G+ + ++N +I A GR A++ Y EM + +P+ T
Sbjct: 462 GGNIVDAHSIKKEMLLNGIYPDVVTYNLLIGAACNFGRIHFALRLYDEMLRRGYEPDIIT 521
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
++ +C G V E++E +++ SG+ + +L+ Y ++ AY L
Sbjct: 522 YTELIRGFCIRGHVMEAEELLAKLQRSGLSIDHAPFQILIQKYCRTRVPGRAYDL 576
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/193 (18%), Positives = 81/193 (41%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G+ + ++N +I F + G +EA + M K+ P+ + + ++ C G
Sbjct: 335 MFKRGLLPDIFTYNTLISGFCKIGNLDEACYIHGVMSKMGAAPDLISYKMIIQGLCIHGD 394
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
V + + + + ++P + + +++ + + +A + D+M + I
Sbjct: 395 VIRANQFLVCMLENLMVPEPLIWNVVIDGHGRHGDLSNALSIRDQMVSFGIPPNVFTYNA 454
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I + N + ++ G + YN L+ A G A R+ DE +R
Sbjct: 455 LIHAQIKG-GNIVDAHSIKKEMLLNGIYPDVVTYNLLIGAACNFGRIHFALRLYDEMLRR 513
Query: 194 GLFPELFRHNKLV 206
G P++ + +L+
Sbjct: 514 GYEPDIITYTELI 526
>gi|410110111|gb|AFV61135.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
duartei]
Length = 381
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++ M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 54 LFREARSLIGEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 113
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 114 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 173
Query: 123 RI 124
I
Sbjct: 174 NI 175
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 123 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 182
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 183 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLRS 242
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 243 SGVE-IDQILFQ 253
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 53/94 (56%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++ +IE R+ + +AI + ++++ P+ A+++V+ A L E++ E+K
Sbjct: 7 YSNLIELSRKLCDYSKAISIFSRLKRLGFXPDLVAYNAMINVFGKAKLFREARSLIGEMK 66
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 67 TAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 100
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 159 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 218
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 219 TIISIWGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 278
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 279 DNIPRDTAIHILAGA---GRIEEAT------YVFRQXIDAGEVKDITVFERMIHLLSKYK 329
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 330 KYSNVVEVFDKMRGLGYFPD 349
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E Q +L M+E GV N ++N+++ + EA K + M C P+ + ++
Sbjct: 319 EAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILI 378
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+ YC +DE+K+ F E+ G+ P+ + Y L+ + + + +A L +MHTN
Sbjct: 379 NGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTN 435
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 5/208 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + M G + ++ +I + G A +M +V C P+ T
Sbjct: 174 AGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVT 233
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C LV+E+ + F +K+ GI P+V+ Y L+ +RW +A +L+EM
Sbjct: 234 YSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMT 293
Query: 121 T-NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ N + +I VT ++ F E N + V + G + YN+L+ + L +
Sbjct: 294 SLNIMPDI--VTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHG-YSLQM 350
Query: 180 RERAARVL-DEATKRGLFPELFRHNKLV 206
AR L D RG P++F ++ L+
Sbjct: 351 EVVEARKLFDVMITRGCKPDVFSYSILI 378
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 3/207 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+KE A+L+ M+ + + +F+ +I+ F + G EA M ++ +PN T +
Sbjct: 282 WKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNS 341
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTN 122
++ Y V E+++ F + + G P V Y +L+ Y R D+A L +EM H
Sbjct: 342 LMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQG 401
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
N V+ + F + +F ++ GY + Y+ LLE G +
Sbjct: 402 LTPN--TVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGK 459
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSV 209
A R+ L P L + L+ S+
Sbjct: 460 AFRLFRAMQGTYLKPNLVMYTILIDSM 486
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 82/203 (40%), Gaps = 1/203 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y ++ +M +G++ N+ + N +I F + ++ K+ P T
Sbjct: 107 YDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTT 166
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ C AG ++ E F ++ + G P V Y ++ K A GL+ +M
Sbjct: 167 LINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVG 226
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+I D + ++ +F + +G + Y +L++ L + A
Sbjct: 227 CQPDVVTYSTLIDSLCKDRLVNEALD-IFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEA 285
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+ +L+E T + P++ + L+
Sbjct: 286 SAMLNEMTSLNIMPDIVTFSLLI 308
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 50/111 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + M +G + +++ ++E F + G +A + + M+ PN
Sbjct: 420 GKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMY 479
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
++ C +G ++ +++ F E+ G+ P V Y ++ K D+A
Sbjct: 480 TILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEA 530
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 4/199 (2%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
+R + G + S N ++ A + + + Y EM K R N T ++ C
Sbjct: 153 FTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCR 212
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK---SNRWDDAYGLLDEMHTNRISNI 127
AG ++++++ +++K+ GI P+V+ Y L+ Y K + + A + EM N+I
Sbjct: 213 AGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPN 272
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+I G DE N + F+++ +G + YN+L+ L G E A +
Sbjct: 273 EVTFNTLIDGFCKDE-NVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLW 331
Query: 188 DEATKRGLFPELFRHNKLV 206
D+ GL P + +N L+
Sbjct: 332 DKMVGLGLKPNIVTYNALI 350
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 88/193 (45%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M + G+ N ++N++I G+ EEAI + +M + PN T A+++ +C +
Sbjct: 299 MQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKM 358
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E+ + F ++ ++P+V+ + ++ Y K ++ + L M I
Sbjct: 359 MKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNC 418
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G + + Q + + +++ +G + YN L++ L A ++L+E
Sbjct: 419 LIAG-LCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNL 477
Query: 194 GLFPELFRHNKLV 206
GL P +N L+
Sbjct: 478 GLKPNHVTYNTLM 490
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 9/210 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E + +M G+ N ++NA+I F + +EA K + ++ K PN T
Sbjct: 321 NGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVIT 380
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ YC G+++E + GILP+V Y L+A + A LL+EM
Sbjct: 381 FNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEME 440
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR----FYNALLEALWC 176
+ +I G ++ + +KL E + LG++ YN L++
Sbjct: 441 NKGLKGDVVTYNILIDGLCKNDKSRNA-----EKLLNEMFNLGLKPNHVTYNTLMDGYCM 495
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A V K P + +N L+
Sbjct: 496 EGKLKAALNVRTRMEKERKQPNVVTYNVLI 525
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 93/209 (44%), Gaps = 8/209 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +YK +A + M + + N +FN +I+ F + A KA+ EM+K PN T
Sbjct: 252 GKMYK-AEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVT 310
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++++ C G ++E+ + + ++ G+ P+++ Y L+ + K +A + D++
Sbjct: 311 YNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVS 370
Query: 121 TNRISNIHQVTGQMIKGEFDD---ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ MI + E + + + D EG + YN L+ L
Sbjct: 371 KQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLD----EGILPNVSTYNCLIAGLCRK 426
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
+ A +L+E +GL ++ +N L+
Sbjct: 427 QDLQAAKELLNEMENKGLKGDVVTYNILI 455
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 6/216 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ KE + +S+ + N +FN +I+A+ + G EE M PN T
Sbjct: 358 MMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYN 417
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ C + +KE E+++ G+ V+ Y +L+ K+++ +A LL+EM
Sbjct: 418 CLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNL 477
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ H ++ G + E + V ++ E + YN L++ + E
Sbjct: 478 GLKPNHVTYNTLMDG-YCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEA 536
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A +L+E ++GL P N+ + + M E G
Sbjct: 537 ANGLLNEMLEKGLNP-----NRTTYDIVRLEMLEKG 567
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 93/216 (43%), Gaps = 4/216 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + + M + + N ++FN I + G+ +A A +M+ PN T ++
Sbjct: 183 DVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLV 242
Query: 66 SVYC---FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
YC AG + +++ +E+ ++ I P+ + + L+ + K A +EM
Sbjct: 243 DGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQ 302
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ +I G ++ + ++ ++DK+ G + YNAL+ + +
Sbjct: 303 GLKPNIVTYNSLINGLCNNGKLEEAID-LWDKMVGLGLKPNIVTYNALINGFCKKKMMKE 361
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A +V D+ +K+ L P + N ++ + M E G
Sbjct: 362 ATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEG 397
>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 96/215 (44%), Gaps = 5/215 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + + SRM + G+A N + +I F + G ++ + Y +M+ V PN T +++
Sbjct: 160 QAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLI 219
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ YC G + + + F EI G+ + + Y +L+ + + A GLL+ M I+
Sbjct: 220 TEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHIN 279
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ ++ G + + + Y+ +KL G + YN L+ +G +
Sbjct: 280 PTTRTFNMLMDGLCNTGQLDKALSYL-EKLKLIGLCPTLVTYNILISGFSKVGNSSVVSE 338
Query: 186 VLDEATKRGLFPELFRH----NKLVWSVDVHRMWE 216
++ E RG+ P + N V S D+ + +E
Sbjct: 339 LVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYE 373
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 91/197 (46%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L++M GV+ N + +IEA + G ++A + M+ + N+ +++ +
Sbjct: 129 LLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFF 188
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + E +Q++K G+LP++ Y L+ Y + + A+ + DE+ ++ +
Sbjct: 189 KKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVA-CNA 247
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT ++ G + E + +++ R +N L++ L G ++A L++
Sbjct: 248 VTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEK 307
Query: 190 ATKRGLFPELFRHNKLV 206
GL P L +N L+
Sbjct: 308 LKLIGLCPTLVTYNILI 324
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 87/190 (45%), Gaps = 7/190 (3%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L ++ G+ ++N +I F + G + EME P++ T +++ +
Sbjct: 305 LEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVR 364
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLL-AVYAKSNRWDDA--YGLLDEMHTNRISNI 127
+ ++++ E F +K G++P Y +L+ + K N + + Y + EMH I
Sbjct: 365 SDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVI 424
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ MI G + ++++ ++++ +++ G + Y + ++ L G A R+L
Sbjct: 425 YNT---MINGYCKECNSYKALKFL-EEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLL 480
Query: 188 DEATKRGLFP 197
E T+ GL P
Sbjct: 481 KEMTEAGLKP 490
>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
[Vitis vinifera]
Length = 644
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 4/204 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L KE +IL +M++ GV +S S ++V++ + + G+ EEA+ +E PN
Sbjct: 271 LLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDV---LEVFNLSPNIFVFN 327
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+ +S C G + ++ + FQ++ G++P Y ++A Y K +A L +M
Sbjct: 328 SFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKR 387
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
I T ++ N +M EY+F ++ EG + YN L+ G ++
Sbjct: 388 GIRP-SVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQK 446
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A +L G+ P+L +N L+
Sbjct: 447 AFELLSMMRSAGVSPDLVTYNILI 470
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL E + IL ++ G + + +F +I F G FEEA + M + +P+ T
Sbjct: 477 GLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTC 536
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+L+ YC + E+ F ++ +G+ V+ Y L+ + DDA L+ M
Sbjct: 537 SALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMM 594
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 81/197 (41%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ RM G+ + S+N ++ + + G ++A + M P+ T ++
Sbjct: 415 LFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLI 474
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GLV+E+K+ E+ G P V+ + ++ ++ +++A+ L M + +
Sbjct: 475 KRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVV 534
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ G + +F K+ G + YN+L+ LG + A ++
Sbjct: 535 TCSALLNGYCRTRCMAE-ANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSM 593
Query: 190 ATKRGLFPELFRHNKLV 206
+ G+ P H+ LV
Sbjct: 594 MIEHGIMPNNITHHALV 610
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
FN+ I G +A K + +M ++ P+ + +++ YC + + + ++
Sbjct: 326 FNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKML 385
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
GI PSV Y +L+ K + A L M T + V+ + + + +
Sbjct: 386 KRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVP-DVVSYNTLMNGYGKKGHL 444
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
Q + + G + YN L+ L GL A +LDE T+RG P++ +
Sbjct: 445 QKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNI 504
Query: 206 V 206
+
Sbjct: 505 I 505
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 71/180 (39%), Gaps = 4/180 (2%)
Query: 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
N++++A + + A EM+ N + +S YC G +D + E+K
Sbjct: 190 NSLLKALLESEQLNLAWDFLKEMKSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKY 249
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
GI P V+ Y +++ K + +A +L +M + + + D
Sbjct: 250 LGIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVF----LDSVSVSSVVDGYCKVG 305
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
E D L + +N+ + L G +AA+V + + GL P+ F + ++
Sbjct: 306 KSEEAMDVLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMM 365
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
++ G+ + +FN++I+ A++ + EM C+P+E T ++ C G
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGK 450
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+DE+ ++++ SG SV+ Y L+ + K+N+ +A + DEM + +S
Sbjct: 451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G + + D++ EG YN+LL G ++AA ++ T
Sbjct: 511 LIDG-LCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSN 569
Query: 194 GLFPELFRHNKLV 206
G P++ + L+
Sbjct: 570 GCEPDIVTYGTLI 582
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 38/242 (15%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K I+ M + G + ++N+VI + G +EA++ +M C PN T
Sbjct: 308 AGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVT 367
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV---------MC---------------- 95
++S C V+E+ E + + S GILP V +C
Sbjct: 368 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR 427
Query: 96 ----------YCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
Y ML+ + D+A +L +M + + +I G F +
Sbjct: 428 SKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDG-FCKANKT 486
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEATKRGLFPELFRHNK 204
+ E +FD++ G YN L++ L C R E AA+++D+ G P+ + +N
Sbjct: 487 REAEEIFDEMEVHGVSRNSVTYNTLIDGL-CKSRRVEDAAQLMDQMIMEGQKPDKYTYNS 545
Query: 205 LV 206
L+
Sbjct: 546 LL 547
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 5/198 (2%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + I M GV+RNS ++N +I+ + R E+A + +M P++ T ++
Sbjct: 487 REAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L+ +C G + ++ + Q + S+G P ++ Y L++ K+ R + A LL + I
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG---LRE 181
+ +I+G F + + + L Y + L C G +RE
Sbjct: 607 NLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGL-CNGGGPIRE 665
Query: 182 RAARVLDEATKRGLFPEL 199
A L E ++G PE
Sbjct: 666 -AVDFLVELLEKGFVPEF 682
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 84/198 (42%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
++MS G+ + +FN +I+A + + AI +M P+E+T V+ Y
Sbjct: 178 AKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEE 237
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131
G +D + +++ G S + +++ + K R +DA + EM Q T
Sbjct: 238 GDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYT 297
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+ + + + D + EGY + YN+++ L LG + A VLD+
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMI 357
Query: 192 KRGLFPELFRHNKLVWSV 209
R P +N L+ ++
Sbjct: 358 TRDCSPNTVTYNTLISTL 375
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 84/192 (43%), Gaps = 1/192 (0%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74
++ G + +FN ++ + G + AI+ M + DP+ T +V+S C G V
Sbjct: 287 NQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEV 346
Query: 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134
E+ E ++ + P+ + Y L++ K N+ ++A L + + I +
Sbjct: 347 KEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSL 406
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
I+G N ++ +F+++ +G YN L+++L G + A +L + G
Sbjct: 407 IQG-LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465
Query: 195 LFPELFRHNKLV 206
+ +N L+
Sbjct: 466 CARSVITYNTLI 477
>gi|414591629|tpg|DAA42200.1| TPA: hypothetical protein ZEAMMB73_531547 [Zea mays]
Length = 462
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 19/232 (8%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G+A + +FN +I+A+ G ++A+ + EM P+ T V++ C G
Sbjct: 55 MLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGK 114
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+D++ E+F ++ G++P Y L+ + A L+ E+ N + G
Sbjct: 115 MDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGS 174
Query: 134 MIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+I G D N +FD G YN L++ +G E+A RV D
Sbjct: 175 IINNLCKLGRVMDAQN------IFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFD 228
Query: 189 EATKRGLFPEL--------FRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
G+ P + + + +++++ + ++E G V ++M E
Sbjct: 229 AMVSAGIEPNVVGEMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTE 280
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+ESG+A N +++ V+ + F+EAI + E+ + + TL +++
Sbjct: 278 MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 337
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+E+K+ F I SG++P + Y +++ K ++A + M
Sbjct: 338 VEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQ 384
>gi|410110095|gb|AFV61127.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
montevidensis]
Length = 418
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++ M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 84 LFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 143
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 144 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 203
Query: 123 RI 124
I
Sbjct: 204 NI 205
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 62/118 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + +++ P+
Sbjct: 13 GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 72
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 73 NAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 130
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 60/121 (49%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 153 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 212
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 213 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 272
Query: 122 N 122
+
Sbjct: 273 S 273
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 83/200 (41%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 189 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 248
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG + + ++ Y ++ A LL E+
Sbjct: 249 TIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 308
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 309 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 359
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 360 KYSNVVEVFDKMRGLGYFPD 379
>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
Length = 742
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 3/205 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + +M E G N SF ++ + + G + ++ EM ++ PN+
Sbjct: 70 GCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVY 129
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S +C G D++++ E++ G+ P V+ + ++ S + +A + +M
Sbjct: 130 NTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQI 189
Query: 122 NRISNIHQ---VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ + + Q +T ++ G F E + +F+K+ + YN L L +G
Sbjct: 190 DEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIG 249
Query: 179 LRERAARVLDEATKRGLFPELFRHN 203
A VL E G+ P ++ +N
Sbjct: 250 KLLEAQLVLKEMVDMGMEPNVYSYN 274
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 100/230 (43%), Gaps = 28/230 (12%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIK----------------- 44
G E + +L +M+E G ++ + N VI+ G+ ++AI+
Sbjct: 354 GRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLG 413
Query: 45 -AYVEM-----EKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM 98
+Y+ + + +C P+ + ++S C AG V E+K++F E+ + P Y +
Sbjct: 414 NSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDV 473
Query: 99 LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY--VFDKLN 156
+ + K + A+ +L +M + Q +I G S Q+ E + D++
Sbjct: 474 FIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGL---GSKNQIFEIYGLIDEMR 530
Query: 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + YN +L +L G + A VLDE ++G+ P + + L+
Sbjct: 531 ERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILI 580
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 86/187 (45%), Gaps = 1/187 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ +E +A+ +M S N +S+N + + G+ EA EM + +PN +
Sbjct: 214 GMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSY 273
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ C G++ +++ + + SSG+LP + Y LL Y + + +A +L EM
Sbjct: 274 NIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMR 333
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ S + T ++ E E + K+N +GY + N +++ L G +
Sbjct: 334 DGCSP-NNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLD 392
Query: 182 RAARVLD 188
+A +++
Sbjct: 393 KAIEIVN 399
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + + ++ M+ SGV ++ ++ ++ + G+ EA EM + C PN T
Sbjct: 284 GVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTC 343
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+L G + E++E Q++ G ++ +V C ++ + + + D A +++ M
Sbjct: 344 NILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGL-CNNGKLDKAIEIVNGMW 402
Query: 121 TN 122
T+
Sbjct: 403 TH 404
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG K+ ++L M + G++ N SF+ +I+AF + F A+ E+ C E
Sbjct: 551 GGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDF-SAVDEIFEIALNVCGHKEAL 609
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ G V ++KE F+ Y L+ K + DDA G+L ++
Sbjct: 610 YSLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKL 668
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 41/97 (42%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + G + ++N++I + E EM + P+ VLS C
Sbjct: 490 VLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLC 549
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106
G V ++ E+ GI P++ + +L+ + K+
Sbjct: 550 EGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKA 586
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 94/206 (45%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + + M GVA + SFN +I F + G EEA++ Y EM R P+ +
Sbjct: 243 GRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSF 302
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ ++ G +D + E +E++ G++P + Y M++ + ++ +A + DEM
Sbjct: 303 SCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVA 362
Query: 122 -NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ ++ VT + E E + +++ G + + L+ G
Sbjct: 363 FGCLPDV--VTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNI 420
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E+A + D + + L P++ +N L+
Sbjct: 421 EKALQFFDTISDQRLRPDIVTYNTLI 446
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 1/207 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L+ M E GV + +F +I + + G E+A++ + + R P+ T ++
Sbjct: 387 DAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLI 446
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G + ++ E + ++ S I P+ + Y +L+ + + + D+A+ LDEM I
Sbjct: 447 DGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIV 506
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+IKG + N + K+ + + YN L+ G A
Sbjct: 507 PNIMTYNSIIKG-YCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFN 565
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVH 212
+L + P+ +N ++ VH
Sbjct: 566 LLKIMENENVQPDAVTYNMIISGFSVH 592
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 91/206 (44%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + A++ M G+ ++N+V++ + GR+++A + + M+ P+ R+
Sbjct: 207 AGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRS 266
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ +C AG ++E+ ++E++ + P V+ + L+ ++ + D A L EM
Sbjct: 267 FNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMR 326
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ V M+ G F V D++ G + YN LL L
Sbjct: 327 EFGLMP-DGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRL 385
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A +L+E +RG+ P+L L+
Sbjct: 386 SDAEELLNEMKERGVPPDLCTFTTLI 411
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 15/210 (7%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E ++S M + V + + N +++A + G E A+ M P T +
Sbjct: 175 FGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNS 234
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
VL G D+++E F+ + + G+ P V + ML+ + ++ ++A EM R
Sbjct: 235 VLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRR 294
Query: 124 ISNIHQVTGQMI-----KGEFDDESNW--QMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
++ +I +GE D + + +M E+ L +G Y ++
Sbjct: 295 VTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREF---GLMPDGV-----IYTMVIGGFCR 346
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
GL A RV DE G P++ +N L+
Sbjct: 347 AGLMLEALRVRDEMVAFGCLPDVVTYNTLL 376
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 86/211 (40%), Gaps = 11/211 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GL E + M G + ++N ++ + R +A + EM++ P+ T
Sbjct: 347 AGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCT 406
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ YC G ++++ + F I + P ++ Y L+ + A L D+MH
Sbjct: 407 FTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMH 466
Query: 121 TNRISNIHQVTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
+ I H +I KG+ D+ + D++ +G + YN++++
Sbjct: 467 SREIFPNHVTYSILIDSHCEKGQVDNAFAF------LDEMVNKGIVPNIMTYNSIIKGYC 520
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + + L + + P+L +N L+
Sbjct: 521 RSGNVSKGQQFLPKMRHDKVMPDLITYNTLI 551
>gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa]
gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 103/252 (40%), Gaps = 38/252 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E Q + M E G + + SF+ ++E + G+ E+A+ + ME+ C P+
Sbjct: 286 GRVSEMQRVFEEMEEDGFSPDCLSFSYLLEGLGRAGKIEDAVMIFGSMEEKGCVPDTNVY 345
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
A++S + G DE + ++ + S P++ Y +++ K+++ DA + DEM
Sbjct: 346 NAMISNFISVGNFDECMKYYRCLLSKNCDPNIDTYTRMISGLIKASKVADALEMFDEMLD 405
Query: 121 TNRISNIHQVTG---------------------------------QMIKGEFDDESNWQM 147
++ VT +++ M
Sbjct: 406 RGMVTKTGTVTSFIEPLCSFGPPHAAMVIYTKARKVGCKISLSAYKLLLMRLSRFGKCGM 465
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF----RHN 203
+ ++D++ GY M Y L+ L +G E A V++E+ ++G P F +N
Sbjct: 466 MLKIWDEMQESGYSSDMEVYEYLISGLCNIGQFENAVLVMEESMRKGFCPSRFICSKLNN 525
Query: 204 KLVWSVDVHRMW 215
KL+ S V R +
Sbjct: 526 KLLASNKVERAY 537
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L+ MS G+ N+ FN +I AF + R EA++ + EM + C P+ T
Sbjct: 432 GKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTF 491
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+++S C + + +++ S G++ + + Y L+ + + +A L++EM
Sbjct: 492 NSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF 551
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ I+ + G GE D + +F+K+ +G N L+ L
Sbjct: 552 QGSLLDEITYNSLIKGLCRAGEVDKARS------LFEKMLRDGLVPSSISCNILINGLCR 605
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G+ E A E RG P++ N L+
Sbjct: 606 SGMVEEAVEFQKEMVLRGSTPDIVTFNSLI 635
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 16/205 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M GV N+ ++N +I AF + G +EA K EM +E T +++ C
Sbjct: 510 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLC 569
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNRIS 125
AG VD+++ F+++ G++PS + +L+ +S ++A EM T I
Sbjct: 570 RAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIV 629
Query: 126 NIHQVTGQMIK-GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + + + G +D +F KL EG YN L+ L G A
Sbjct: 630 TFNSLINGLCRAGRIEDGLT------MFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDAC 683
Query: 185 RVLDEATKRGLFPELFRHNKLVWSV 209
+LDE + G P N WS+
Sbjct: 684 LLLDEGIEDGFVP-----NDRTWSI 703
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 93/210 (44%), Gaps = 10/210 (4%)
Query: 2 GLYKECQAILSRMSES-GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + +A+LS M S G+ + ++N++I + + G A++ +M C PN +
Sbjct: 361 GRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYS 420
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ +C G +DE+ E+ + G+ P+ + + L++ + K +R +A + EM
Sbjct: 421 YTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMP 480
Query: 121 TNRISNIHQVTGQMIKG--EFDD--ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+I G E D+ + W + + + EG YN L+ A
Sbjct: 481 RKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMI-----SEGVVANTVTYNTLINAFLR 535
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A ++++E +G + +N L+
Sbjct: 536 RGEIKEARKLVNEMVFQGSLLDEITYNSLI 565
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 8/200 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L M++ G NS + +I + + R EA++ EM + C P+ T V+
Sbjct: 232 SVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGL 291
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--HTNRISN 126
C ++E+ + + G P + Y L+ K R D A L + T+ I N
Sbjct: 292 CKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFN 351
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ G + G DD + D + G + YN+L+ W GL A V
Sbjct: 352 T-LIHGFVTHGRLDDAK-----AVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEV 405
Query: 187 LDEATKRGLFPELFRHNKLV 206
L + +G P ++ + LV
Sbjct: 406 LRDMRNKGCKPNVYSYTILV 425
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N V+E G + A + +M + P T V+ C VD + +++
Sbjct: 178 SYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDM 237
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G +P+ + Y L+ +K NR ++A LL+EM
Sbjct: 238 TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 272
>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
Length = 761
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 86/180 (47%), Gaps = 1/180 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ ++ M + G+ N+ FN++I++ + GR E+ K + M ++ P+ T ++
Sbjct: 431 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 490
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
YC AG +DE+ + + S G+ P+ + Y L+ Y K +R DA L EM ++ +S
Sbjct: 491 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPD 550
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+++G F E ++ ++ G + + YN +L L L + A R+
Sbjct: 551 IITYNIILQGLFQTRRTAAAKE-LYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMF 609
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 6/197 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+++++I A +G ++A++ M K PN RT +++ YC +G E+ +++
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKV 292
Query: 85 KSSGILPS-----VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF 139
+S G+ P + YC LL YA + LLD M N I H V +I +
Sbjct: 293 RSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICA-Y 351
Query: 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
+ VF K+ +G Y A++ L G E A ++ GL P
Sbjct: 352 AKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 411
Query: 200 FRHNKLVWSVDVHRMWE 216
+N L+ + WE
Sbjct: 412 IVYNSLIHGLCTCNKWE 428
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 93/209 (44%), Gaps = 21/209 (10%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
A+L M +G+ + +N +I A+ + G+ +EA+ + +M + +P+ T AV+ +
Sbjct: 326 HALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGI 385
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-------- 119
C +G V+++ F+++ G+ P + Y L+ N+W+ A L+ EM
Sbjct: 386 LCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 445
Query: 120 --HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
N I + H G++I+ E +FD + G + Y+ L++
Sbjct: 446 TIFFNSIIDSHCKEGRVIES-----------EKLFDLMVRIGVKPDIITYSTLIDGYCLA 494
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A ++L GL P + L+
Sbjct: 495 GKMDEAMKLLSGMVSVGLKPNTVTYRTLI 523
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 12/207 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD--------PNERTL 61
+L+ M ++GV N ++ +++ + G+ +EAI ++KVR D P+ T
Sbjct: 253 VLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGF---LKKVRSDGVEPDGLEPDIATY 309
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + + +GI P Y +L+ YAK + D+A + +M
Sbjct: 310 CTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQ 369
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N VT + G + F+++ EG G YN+L+ L E
Sbjct: 370 QGL-NPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 428
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
RA ++ E RG+ N ++ S
Sbjct: 429 RAEELILEMLDRGICLNTIFFNSIIDS 455
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/257 (20%), Positives = 100/257 (38%), Gaps = 43/257 (16%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK---------- 51
G E + S+M + G+ ++ ++ AVI + GR E+A+ + +M
Sbjct: 355 GKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVY 414
Query: 52 -------VRCDPNERTLEAVLSV------------------YCFAGLVDESKEQFQEIKS 86
C+ ER E +L + +C G V ES++ F +
Sbjct: 415 NSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR 474
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
G+ P ++ Y L+ Y + + D+A LL M + + + VT + + + S
Sbjct: 475 IGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKP-NTVTYRTLINGYCKISRMG 533
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+F ++ G + YN +L+ L+ A + T+ G EL +N ++
Sbjct: 534 DALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIIL 593
Query: 207 WSV-------DVHRMWE 216
+ D RM++
Sbjct: 594 HGLCKNKLTDDALRMFQ 610
>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
Length = 894
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 90/211 (42%), Gaps = 14/211 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E +S M + G + ++ +I+ + + G + A++ +M K RC PN T
Sbjct: 605 GMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTY 664
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC G D ++ F ++S G+ P+V+ Y +L+ K ++ A + M
Sbjct: 665 ASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLL 724
Query: 122 NRISNIHQVTGQMIKG--------------EFDDESNWQMVEYVFDKLNCEGYGLGMRFY 167
N S ++ G + D + VF L +G + Y
Sbjct: 725 NHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDGLDPRISAY 784
Query: 168 NALLEALWCLGLRERAARVLDEATKRGLFPE 198
NA++ +L + +A + ++ + +G P+
Sbjct: 785 NAIIFSLCRHNMLGKAMELKEKMSNKGCLPD 815
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 11/204 (5%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+++L M E G++ N +N VI A + +A+ +M R DP+ T +++
Sbjct: 366 ESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAA 425
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNR 123
+C G V+E+ + +E + P+ + Y L+ + A LL EM HT
Sbjct: 426 FCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPD 485
Query: 124 ISNIHQ-VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ + + G ++ G+ D+ V +K+ YN L+ L +
Sbjct: 486 VVTLGALIHGLVVSGQVDE------ALMVREKMAERQVMPDANIYNVLISGLCKKRMLSA 539
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A +L E ++ + P+ F + L+
Sbjct: 540 AKNLLVEMLEQKVQPDKFVYTTLI 563
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 88/233 (37%), Gaps = 36/233 (15%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L++M S + +FN +I AF + G EEA+K E + +PN+ + ++ +
Sbjct: 402 AVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGF 461
Query: 69 C-----------------------------------FAGLVDESKEQFQEIKSSGILPSV 93
C +G VDE+ +++ ++P
Sbjct: 462 CVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDA 521
Query: 94 MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD 153
Y +L++ K A LL EM ++ V +I G F +F+
Sbjct: 522 NIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDG-FIRSDKLSDARKIFE 580
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +G + YNA+++ G+ A + K G P+ F + L+
Sbjct: 581 FMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLI 633
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 1/170 (0%)
Query: 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
GR EE + C P ++ YC G V E++ GI+P+V+ Y
Sbjct: 290 GRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTY 349
Query: 97 CMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN 156
++ + + LL EM +S Q+ +I S Q + V +++
Sbjct: 350 GAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALA-VLNQMV 408
Query: 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ + +N L+ A G E A ++L EA +R L P + L+
Sbjct: 409 ASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLI 458
>gi|410110097|gb|AFV61128.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
rugosa]
Length = 348
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++ M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 37 LFREARSLIGEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFXEMREIKCLLDLTTCN 96
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 97 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 156
Query: 123 RI 124
I
Sbjct: 157 NI 158
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 106 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 165
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 166 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 225
Query: 122 NRISNIHQVTGQ 133
+ + I Q+ Q
Sbjct: 226 SGVE-IDQILFQ 236
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 142 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 201
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 202 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 261
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 262 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 312
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 313 KYSNVVEVFDKMRGLGYFPD 332
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 45/81 (55%)
Query: 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM 98
+ +AI + +++ P+ A+++V+ A L E++ E+K++G++P+ Y
Sbjct: 3 YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYST 62
Query: 99 LLAVYAKSNRWDDAYGLLDEM 119
LL +Y ++ ++ +A + EM
Sbjct: 63 LLTMYVENKKFLEALSVFXEM 83
>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 539
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 43/244 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME---KVRCD--- 55
GL E + + M E+G+ + S+N++I F GRF+ A+K EM KV D
Sbjct: 224 GLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYT 283
Query: 56 ------------------------------PNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
P+ + A+++ YC +G V E+K+ F ++
Sbjct: 284 FNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMV 343
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN- 144
LP+V+ YC L+ Y K D+A LL EMH + ++ G +
Sbjct: 344 ERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSL 403
Query: 145 --WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
W +VE + G + YN LL+ + ++A + + G+ P + +
Sbjct: 404 YEWDLVE----AMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTY 459
Query: 203 NKLV 206
N L+
Sbjct: 460 NILL 463
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 85/223 (38%), Gaps = 44/223 (19%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++L + G + + +I + G+ +AI+ + +M+K+R PN V+
Sbjct: 158 EAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVI 217
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM------ 119
C GLVDE+ E+ +GI V Y ++ + R+ A LLDEM
Sbjct: 218 DGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKV 277
Query: 120 ---------------HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGM 164
R+S + V MIK G+ +
Sbjct: 278 YPDVYTFNILIDGLCKLGRVSEAYNVVAVMIK---------------------RGWKPDI 316
Query: 165 RFYNALLEALWCL-GLRERAARVLDEATKRGLFPELFRHNKLV 206
YNAL+ +CL G A +V D+ +R P + + L+
Sbjct: 317 VSYNALMNG-YCLSGSVGEAKQVFDKMVERTALPNVISYCTLI 358
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M SG + ++N +++ + + +F++A+ + + ++ PN RT +L C +G
Sbjct: 412 MRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGR 471
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+ +KE FQ + + G P++ Y +++ K D+A LL +M N
Sbjct: 472 LKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNN 520
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 13/221 (5%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74
S+ + + +F+ +I AF Q G+ A + K+ + R L ++ C G V
Sbjct: 97 SKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRV 156
Query: 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNI---HQV 130
E+ E G +CY ++ K + DA + +M R+ N+ + V
Sbjct: 157 LEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTV 216
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+ K DE+ E V + + + Y YN+++ +G + A ++LDE
Sbjct: 217 IDGLCKQGLVDEACGLCTEMVENGIELDVYS-----YNSMIHGFCSVGRFQAAVKLLDEM 271
Query: 191 TKRG-LFPELFRHNKLVWSV-DVHRMWEGGAYTAISVWLNK 229
RG ++P+++ N L+ + + R+ E AY ++V + +
Sbjct: 272 VVRGKVYPDVYTFNILIDGLCKLGRVSE--AYNVVAVMIKR 310
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +++ M + G + S+NA++ + G EA + + +M + PN +
Sbjct: 295 GRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISY 354
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC +VDE+ E+ + ++P + Y LL +KS R + L++ M
Sbjct: 355 CTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRA 414
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +T ++ ++ + +F + G +R YN LL+ L G +
Sbjct: 415 SG-QPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLK 473
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + + +G P + +N ++
Sbjct: 474 YAKEIFQLLSAKGCQPNIRTYNIMI 498
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 47/93 (50%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + A+ + E G++ N ++N +++ + GR + A + + + C PN RT
Sbjct: 437 FDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNI 496
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96
++ C G +DE++ ++ ++ LP+ + +
Sbjct: 497 MIHGLCKEGFLDEAEALLYKMVNNNYLPNYITF 529
>gi|357115068|ref|XP_003559314.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Brachypodium distachyon]
Length = 495
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 99/232 (42%), Gaps = 38/232 (16%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
++GV ++D+ N +IEA GR + A+ + M K RC PN T + +++ C G D
Sbjct: 189 KAGVLPDADTLNWLIEALCGAGRLDLALIQFDRMSKKRCTPNSHTFKILITALCSHGRAD 248
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYA--KSNRWDDAYGLLDEMHT------------ 121
ES E F+++ +P + Y +L V++ + + DA +L +M
Sbjct: 249 ESVELFEKMLQLRCIPDISFYFQVLPVFSLFQLKKEKDALLILAQMLMEGCVLDSYAYNV 308
Query: 122 ------------------NRISNIHQVTGQ-MIKGEFDDESNWQMVEYVFDKL----NCE 158
NR+ N V Q + D + + ++ V + L N +
Sbjct: 309 LLRCFLTKETVLEAAILFNRMVNDGFVPDQETFELLVPDMAVFSLLSTVSESLLKVVNID 368
Query: 159 GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVD 210
G + R N ++ L G + A + LD+ +G P+ H+ LV +VD
Sbjct: 369 GV-MSPRISNIIIYGLIKEGFKNEACKFLDQMLDKGWVPDSKTHSVLVGTVD 419
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 76/200 (38%), Gaps = 8/200 (4%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR-FEEAIKAYVEMEKVRCDPNERTLE 62
Y E ++ + + S N V+ + GR ++AY+E+ K P+ TL
Sbjct: 141 YDEALLVVQNACSGKLKLSVSSCNVVLCGLAKEGRGLRPFVRAYMEIVKAGVLPDADTLN 200
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ C AG +D + QF + P+ + +L+ R D++ L ++M
Sbjct: 201 WLIEALCGAGRLDLALIQFDRMSKKRCTPNSHTFKILITALCSHGRADESVELFEKMLQL 260
Query: 123 R----ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
R IS QV + E + + + ++ EG L YN LL
Sbjct: 261 RCIPDISFYFQVLPVFSLFQLKKEKDALL---ILAQMLMEGCVLDSYAYNVLLRCFLTKE 317
Query: 179 LRERAARVLDEATKRGLFPE 198
AA + + G P+
Sbjct: 318 TVLEAAILFNRMVNDGFVPD 337
>gi|225447562|ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Vitis vinifera]
Length = 616
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 1/211 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M + G +S NA I A R + A+ Y EM++ R PN TL V+ +C
Sbjct: 266 VFCQMKDYGFLPRVESCNAYISASISLQRGDIALTFYREMQRYRISPNVYTLNMVMCAFC 325
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++++ E F+ +++ G P++ Y L+A Y + L M N +
Sbjct: 326 KWGKLEKAIEVFKRMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDV 385
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G F +F ++ YN L+ +G E R+ DE
Sbjct: 386 TFNTLING-FCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDE 444
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
+ G+ ++ +N L+ + + + AY
Sbjct: 445 MLRNGIKADILTYNALILGLCMEGRTKKAAY 475
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 1/210 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ RM G + S+N +I + G +K + MEK P++ T +++ +C
Sbjct: 336 VFKRMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFC 395
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + E+ + F E+K++ ++P+ + Y L+ Y++ + L DEM N I
Sbjct: 396 RGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADIL 455
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G E + Y+ +L+ E ++AL+ ERA ++
Sbjct: 456 TYNALILG-LCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKS 514
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
+ G P L+ + + ++G
Sbjct: 515 MIRSGCHPNYHTFKMLISTFCKNEDFDGAV 544
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 80/207 (38%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG E I S M + V N+ ++N +I + Q G E + + EM + + T
Sbjct: 397 GGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILT 456
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
A++ C G ++ +E+ ++P+ + L+ + A+ L M
Sbjct: 457 YNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMI 516
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ N H T +M+ F ++ V +++ + L LW G
Sbjct: 517 RSGCHPNYH--TFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSDTLSELCRGLWLSGK 574
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
E A ++ E + L PE F +K +
Sbjct: 575 EELALKLCKEMEMKHLMPEGFDKSKTI 601
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 80/209 (38%), Gaps = 30/209 (14%)
Query: 4 YKECQAILSRMSESG-VARNSDSFNAVIEAFR----QGGRFEEAIKAYVEMEKVRCDPNE 58
+K +++L + SG + S F A++ ++R F+ K Y +M+K+R
Sbjct: 207 FKSAESVLKGILGSGSIDHPSKLFEAILYSYRICDSSPCVFDSLFKTYAQMKKLR----- 261
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+ V+C ++K G LP V ++ R D A E
Sbjct: 262 ----NAIDVFC-------------QMKDYGFLPRVESCNAYISASISLQRGDIALTFYRE 304
Query: 119 MHTNRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
M RIS N++ T M+ F + VF ++ G+ + YN L+
Sbjct: 305 MQRYRISPNVY--TLNMVMCAFCKWGKLEKAIEVFKRMETMGFSPTITSYNTLIAGYCNK 362
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
GL ++ K G+ P+ N L+
Sbjct: 363 GLLNSGMKLKILMEKNGVRPDDVTFNTLI 391
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
++ G+ + +FN++I+ A++ + EM C+P+E T ++ C G
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGK 450
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+DE+ ++++ SG SV+ Y L+ + K+N+ +A + DEM + +S
Sbjct: 451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNT 510
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I G + + D++ EG YN+LL G ++AA ++ T
Sbjct: 511 LIDG-LCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSN 569
Query: 194 GLFPELFRHNKLV 206
G P++ + L+
Sbjct: 570 GCEPDIVTYGTLI 582
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 38/242 (15%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K I+ M + G + ++N+VI + G +EA++ +M C PN T
Sbjct: 308 AGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVT 367
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV---------MC---------------- 95
++S C V+E+ E + + S GILP V +C
Sbjct: 368 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR 427
Query: 96 ----------YCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
Y ML+ + D+A +L +M + + +I G F +
Sbjct: 428 SKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDG-FCKANKI 486
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEATKRGLFPELFRHNK 204
+ E +FD++ G YN L++ L C R E A++++D+ G P+ F +N
Sbjct: 487 REAEEIFDEMEVHGVSRNSVTYNTLIDGL-CKSRRVEDASQLMDQMIMEGQKPDKFTYNS 545
Query: 205 LV 206
L+
Sbjct: 546 LL 547
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 5/198 (2%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + I M GV+RNS ++N +I+ + R E+A + +M P++ T ++
Sbjct: 487 REAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSL 546
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L+ +C G + ++ + Q + S+G P ++ Y L++ K+ R + A LL + I
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG---LRE 181
+ +I+G F + + + L Y + L C G +RE
Sbjct: 607 ALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGL-CNGGGPIRE 665
Query: 182 RAARVLDEATKRGLFPEL 199
A L E ++G PE
Sbjct: 666 -AVDFLVELLEKGFVPEF 682
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 83/198 (41%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
++MS G+ + +FN +I+A + + AI +M P+E+T ++ Y
Sbjct: 178 AKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEE 237
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131
G +D + +++ G S + +++ + K R +DA + EM Q T
Sbjct: 238 GDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYT 297
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+ + + + D + EGY + YN+++ L LG + A LD+
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMI 357
Query: 192 KRGLFPELFRHNKLVWSV 209
R P +N L+ ++
Sbjct: 358 TRDCSPNTVTYNTLISTL 375
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 84/192 (43%), Gaps = 1/192 (0%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74
++ G + +FN ++ + G + AI+ M + DP+ T +V+S C G V
Sbjct: 287 NQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEV 346
Query: 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134
E+ E ++ + P+ + Y L++ K N+ ++A L + + I +
Sbjct: 347 KEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSL 406
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
I+G N ++ +F+++ +G YN L+++L G + A +L + G
Sbjct: 407 IQG-LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465
Query: 195 LFPELFRHNKLV 206
+ +N L+
Sbjct: 466 CARSVITYNTLI 477
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 7/208 (3%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAI---KAYVEMEKVRCDPNERTL 61
E A+LS + R++ S+N V+ A + G + A+ + ++ PN +
Sbjct: 41 PESPALLSALPS---VRDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISY 97
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C ++ + ++ G+ P V+ Y L+ + D A LL+EM
Sbjct: 98 TTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCE 157
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I V ++ G + W+ V VF++++ G + Y AL+++L G +
Sbjct: 158 SGIEPNVVVYSCLLHG-YCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVK 216
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
+AARV+D T+RGL P + +N L+ S+
Sbjct: 217 KAARVMDMMTERGLEPNVVTYNVLINSM 244
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 89/208 (42%), Gaps = 5/208 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + MS G+ + + A+I++ + G+ ++A + M + +PN T
Sbjct: 178 GRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTY 237
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G V E+ + + + G+ P V+ Y L+ + D+A LL+EM
Sbjct: 238 NVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQ 297
Query: 122 --NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE-GYGLGMRFYNALLEALWCLG 178
R+ +I G + W + E G + +N L+ L +
Sbjct: 298 GETRVRPDLMTFNSVIHGLC--KIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVH 355
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
++A ++DE GL P+ F ++ L+
Sbjct: 356 KVKKAMELMDEMASSGLQPDSFTYSILI 383
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 84/205 (40%), Gaps = 2/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + + M+E+G N +FN +I + + ++A++ EM P+ T
Sbjct: 320 GWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTY 379
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C V+ ++ E++ G+ P + Y LL A L +EM
Sbjct: 380 SILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDR 439
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N + + MI G F E++ D ++ EG Y+ + G
Sbjct: 440 NCKLDAAAYS-TMIHGAFKSGEKKIAEEFLKDMID-EGLIPDAVTYSIPINMFAKSGDLA 497
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A RVL + T G P++ + L+
Sbjct: 498 AAERVLKQMTASGFVPDVAVFDSLI 522
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ESG+ N ++ ++ + + GR+E K + EM +P+ A++ C
Sbjct: 151 LLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLC 210
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G V ++ + G+ P+V+ Y +L+ K +A L M
Sbjct: 211 RHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNM 260
>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Brachypodium distachyon]
Length = 501
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 94/204 (46%), Gaps = 3/204 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+K+ + ++ + G+ RN+++ N +++A + + E A K ++ + P+ T
Sbjct: 167 WKDAVLLFDKLGDMGLERNTETMNVLLDALCKEKKVEVARKVFLVLSP-HIQPDAYTFNI 225
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+ +C A +DE+ +E+K+ G PSV+ Y +L Y K + + Y +LD M ++
Sbjct: 226 FVHGWCSARRIDEAMWTIEEMKAQGFPPSVITYTTVLEAYCKQHNFRMVYEILDSM-SSE 284
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ + +T MI ++ V ++ G FYN+L+ L G A
Sbjct: 285 GCHPNVITYTMIMTSLAKCHMFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKAGHLSEA 344
Query: 184 ARVLD-EATKRGLFPELFRHNKLV 206
++V E G+ L +N ++
Sbjct: 345 SQVFQVEMPMNGVPRSLATYNTMI 368
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G L + Q M +GV R+ ++N +I F E+A+ EME C P+ +T
Sbjct: 339 GHLSEASQVFQVEMPMNGVPRSLATYNTMISVFCYKDLDEDALSVLKEMETQSCKPDLQT 398
Query: 61 LEAVLSVYCF-AGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDE 118
+L ++ G D + E+ + L + Y +L+ + D AY L DE
Sbjct: 399 YRPLLRLFLSRRGQDDTVRNLLNELMNKHSLGLDLDTYTLLIHGLCRVGETDWAYRLFDE 458
Query: 119 M 119
M
Sbjct: 459 M 459
>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
Length = 552
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 9/237 (3%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ RM GV ++ AV++ + GR ++A K EME+ NE V++ +
Sbjct: 209 GVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGF 268
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +G +D + + ++ + +S + P+V+ Y ++ A + +A L EM ++ +
Sbjct: 269 CKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNI 328
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
G MI+G F + + V++++ G Y+ L+ L +G + A V
Sbjct: 329 ITYGSMIQGYFKIGDTSRALS-VWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWK 387
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLAT 245
RG P+ + ++ + V M +GG L Y+M G P + +
Sbjct: 388 HMLDRGCAPDTIAYTSMIKGLCVSGMVDGG--------LRLFYDMLASGHADPDVIS 436
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 6/226 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + A++ M GV +++FN V+ A + G + A K + M+ C P T
Sbjct: 132 AGRVDDAVALVHEMVADGVV-AAEAFNPVLRAMLRAGDVKGAAKLFEFMQLKGCVPTAAT 190
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ G + + ++ G++P VM Y ++ + R DA+ + +EM
Sbjct: 191 YNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEME 250
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N ++ V +I G F V++ + + Y+A++ L G
Sbjct: 251 RNGLARNEFVYSTVITG-FCKSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKM 309
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
A + E P + + ++ G A+SVW
Sbjct: 310 TEAELLFREMIDSKCAPNIITYGSMIQGY----FKIGDTSRALSVW 351
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + M +G+ARN ++ VI F + G + A+K + M PN
Sbjct: 237 GRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRPNVVLY 296
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ G + E++ F+E+ S P+++ Y ++ Y K A + +EM
Sbjct: 297 SAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEM 354
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G N+ S++ +I GR ++A+ + M C P+ +++ C +G+
Sbjct: 354 MIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGM 413
Query: 74 VDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
VD F ++ +SG P V+ Y +LL + A LL+ M
Sbjct: 414 VDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMDLLNRM 460
>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 856
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 113/261 (43%), Gaps = 39/261 (14%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G + +++ V+E G +EA ++EM + P+E ++ ++ AG
Sbjct: 529 MQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRR-DWAPDEPVYGLLVDLWGKAGN 587
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI--------- 124
VD++ + + G+ P+V LL+ + K NR+ DAYG+L M +
Sbjct: 588 VDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKLNRFQDAYGVLQNMLAQGLVPSLQTYTL 647
Query: 125 -----SNIHQ----------VTGQ--------MIKGEFDDESNWQMVEYVFDKLNCEGYG 161
++ H +TG + E E+ Y D ++ E
Sbjct: 648 LLSCCTDAHAQMGLCCQLMAITGHPAHMFLLYLPDAEPGGENVRDHARYFLDMMHSEDRE 707
Query: 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH-NKLVWSVDVHRMWEGGAY 220
+A+++ L GL+E A + + A +R ++P+ R + W +++H M EG A
Sbjct: 708 SKRGIMDAVIDFLHKSGLKEEAGFIWEVAAQRNVYPDSVREKSSSYWLINLHLMSEGTAV 767
Query: 221 TAIS---VWLNKMYEMFMMGE 238
TA+S W ++ +M +MG
Sbjct: 768 TALSRTLAWFHR--QMLLMGS 786
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 12/195 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ RM E G++ ++ +++A++ +GG+ A K + EM C PN T ++++
Sbjct: 455 LYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQA 514
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A D + +++++ +G P + Y +++ V D+A + EM + +
Sbjct: 515 KARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRRDWAPD-EP 573
Query: 130 VTGQMI-----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
V G ++ G D W + + +G + N+LL A L + A
Sbjct: 574 VYGLLVDLWGKAGNVDKALGW------YHAMLQDGLQPNVPTCNSLLSAFLKLNRFQDAY 627
Query: 185 RVLDEATKRGLFPEL 199
VL +GL P L
Sbjct: 628 GVLQNMLAQGLVPSL 642
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
+ G + ++ +I Q +F K EM V C P T ++ Y A +
Sbjct: 356 QPGFKHDGHTYTTMIGILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAYGRANYLR 415
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD---DAYGLLDEM 119
E+ + F+E++ +G P + YC L+ ++AKS + D YG + E+
Sbjct: 416 EAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEV 462
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 1/180 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L MS ++N +I A+ + EA+K + EME P+ T ++ ++
Sbjct: 385 LLDEMSSVNCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHA 444
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+G ++ + + + ++ G+ P Y ++ K + AY L EM N + +
Sbjct: 445 KSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCT-PNL 503
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT +I N+ V ++ + G+ Y+ ++E L G + A V E
Sbjct: 504 VTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLE 563
>gi|410110085|gb|AFV61122.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
fucata]
Length = 382
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++ M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 55 LFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 114
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 115 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 174
Query: 123 RI 124
I
Sbjct: 175 NI 176
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 243
Query: 122 NRISNIHQVTGQ 133
+ I I Q+ Q
Sbjct: 244 SGIE-IDQILFQ 254
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 52/94 (55%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++ +IE R+ + +AI + +++ P+ A+++V+ A L E++ E+K
Sbjct: 8 YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMK 67
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 68 AAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 101
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 160 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 219
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSGI + + ++ Y ++ A LL E+
Sbjct: 220 TIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 279
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 280 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 330
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 331 KYSNVVEVFDKMRGLGYFPD 350
>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 886
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 5/232 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +A+ + M + + + +++ + + G E+A + Y M PN T
Sbjct: 553 GYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTC 612
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++LS + + E+ E Q + + G+ PS+ Y +LL+ D G ++
Sbjct: 613 NSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLD-MGFCGQLMA 671
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ H +M D E+ D ++ E +A+++ L G +E
Sbjct: 672 STGHPAHMFLLKMPAAGPDGENVRNHANNFLDLMHSEDRESKRGLVDAVVDFLHKSGQKE 731
Query: 182 RAARVLDEATKRGLFPELFRHNKLV-WSVDVHRMWEGGAYTAIS---VWLNK 229
A V + A ++ +FP+ R W +++H M EG A TA+S W K
Sbjct: 732 EAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAWFRK 783
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 49/110 (44%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
+ G + ++ ++ + +F K EM + C PN T ++ Y A ++
Sbjct: 357 QPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLN 416
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
E+ F +++ +G P + YC L+ ++AK+ D A + M +S
Sbjct: 417 EAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS 466
>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
Length = 870
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 112/257 (43%), Gaps = 18/257 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE--R 59
GL + ++L M + G+ N ++N +I+AF + F E +M V + R
Sbjct: 539 GLVECALSLLDEMMKMGIKPNVVTYNTIIDAFGKSKIFTEEDSDIGDMGIVGVYGGQVVR 598
Query: 60 TLEAVLSVYCFAGLVDESKEQ--------FQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111
V+ A V + Q FQ++ G+ P+V+ + +L ++ N ++D
Sbjct: 599 VTNPVIRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSRCNSFED 658
Query: 112 AYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
A LL+++ ++++ V ++ G W +F++L FYNAL
Sbjct: 659 AALLLEQLRLFD-NSVYGVAYGLLMGH---REAWSQARSLFNQLGRMDSPTSSAFYNALT 714
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMY 231
+ LW G R+ A +V+ E R ++ + + +D+H M G A + WL +
Sbjct: 715 DVLWHFGQRQGAQQVVLEGVNRRVWENTWGD----FCLDLHLMSCGAAQAMVHAWLLNVR 770
Query: 232 EMFMMGEDLPQLATVVV 248
+ G +P+ +++
Sbjct: 771 SIVFEGRAMPEFLSILT 787
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 85/194 (43%), Gaps = 1/194 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + + M G R+ ++N ++A + G A++ ++ME PN T
Sbjct: 329 GHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTY 388
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + DE+ + +++KS I +CY LLA+Y K+ ++D+ + +EM
Sbjct: 389 STLMDGFSKLEKYDEALKLREKMKSLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEK 448
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I +I G + + MV ++ + +G + Y+ L++ G+
Sbjct: 449 LGIEKDTVTYNSLING-YGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHG 507
Query: 182 RAARVLDEATKRGL 195
A V + + GL
Sbjct: 508 DAFNVYLDFKESGL 521
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 56/118 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y E + M + G+ +++ ++N++I + + GR + +M P+ T
Sbjct: 434 GKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTY 493
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +Y AG+ ++ + + K SG+ V+ + + AK+ + A LLDEM
Sbjct: 494 STLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEM 551
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/194 (18%), Positives = 89/194 (45%), Gaps = 1/194 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G+ + +FN+++ A + G E+A + EM + + T + C G
Sbjct: 305 QMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVDAICKCG 364
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ + + +++++ P+V+ Y L+ ++K ++D+A L ++M + RI + +V
Sbjct: 365 NMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLRI-QLDRVCY 423
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+ + + + V +++ G YN+L+ G + A ++ +
Sbjct: 424 NTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRA 483
Query: 193 RGLFPELFRHNKLV 206
+G+ P + ++ L+
Sbjct: 484 QGVAPSVLTYSTLI 497
>gi|410110089|gb|AFV61124.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
macropoda]
Length = 427
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++ M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 101 LFREARSLIGEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 160
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 161 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 220
Query: 123 RI 124
I
Sbjct: 221 NI 222
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 62/118 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + ++K P+
Sbjct: 30 GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKKSGFTPDLVAY 89
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 90 NAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEM 147
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 170 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 229
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 230 NSMXMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 289
Query: 122 NRISNIHQVTGQ 133
+ I I Q+ Q
Sbjct: 290 SGIE-IDQILFQ 300
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 83/200 (41%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N++ + + E+A EM+ +PN T
Sbjct: 206 LFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 265
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSGI + + ++ Y ++ A LL E+
Sbjct: 266 TIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 325
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 326 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 376
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 377 KYSNVVEVFDKMRGLGYFPD 396
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 97/231 (41%), Gaps = 40/231 (17%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M +SG N+ + ++I F + GR E+ K Y EM C P+ L + AG
Sbjct: 506 KMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAG 565
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLA------------------------------- 101
+++ + F+EIK+ G+ P V Y +L+
Sbjct: 566 EIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYN 625
Query: 102 ----VYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG--EFDDESNWQMVEYVFDKL 155
+ KS + + AY LL+EM T + G +I G + D M +F++
Sbjct: 626 IVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYM---LFEEA 682
Query: 156 NCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ L + Y++L++ +G + A +L+E ++GL P + N L+
Sbjct: 683 KSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLL 733
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 4/199 (2%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L M + + +N I+ F + G+ + A K + E++ P++ T +++ V
Sbjct: 258 SLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVL 317
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C A VDE+ E F+E+ S+ +P V Y ++ Y ++++AY LL+ R I
Sbjct: 318 CKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLE--RQKRKGCIP 375
Query: 129 QVTG-QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
V I + + + + + + + YN L++ L G E A +V
Sbjct: 376 SVIAYNCILTCLGRKGKVEEALRILEAMKMDA-APNLTSYNILIDMLCKAGELEAALKVQ 434
Query: 188 DEATKRGLFPELFRHNKLV 206
D + GLFP + N ++
Sbjct: 435 DSMKEAGLFPNIITVNIMI 453
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 1/167 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+A+ + G+ + S++ +I +GG ++ K + EM++ + R V+
Sbjct: 571 RALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDG 630
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+C +G V+++ + +E+K+ G+ P+V+ Y ++ AK +R D+AY L +E + +
Sbjct: 631 FCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLN 690
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
V +I G F + ++L +G +N LL+AL
Sbjct: 691 VVVYSSLIDG-FGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDAL 736
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG K+ + M E G+ ++ ++N VI+ F + G+ +A + EM+ P T
Sbjct: 599 GGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVT 658
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+V+ +DE+ F+E KS + +V+ Y L+ + K R D+AY +L+E+
Sbjct: 659 YGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEEL 717
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 35/152 (23%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E IL + + G+ N+ ++N +++A + +EA+ + M+ ++C PNE T
Sbjct: 705 GRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTY 764
Query: 62 EAVLSVYC------------------------------FAGL-----VDESKEQFQEIKS 86
+++ C +GL V E+K+ F+ KS
Sbjct: 765 SIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKS 824
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
SG +P CY ++ + +N+ DAY L +E
Sbjct: 825 SGGIPDSACYNAMIEGLSNANKAMDAYILFEE 856
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 13/220 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E IL M + A N S+N +I+ + G E A+K M++ PN T+
Sbjct: 391 GKVEEALRILEAM-KMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITV 449
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C A +DE+ F + P + +C L+ + + +DAY L ++M
Sbjct: 450 NIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLD 509
Query: 122 NRISNIHQVTGQMIKGEFD---DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ + V +I+ F E + ++ ++ G + N ++ ++ G
Sbjct: 510 SGQTPNAVVYTSLIRNFFKCGRKEDGHK----IYKEMMHRGCSPDLMLLNNYMDCVFKAG 565
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
E+ + +E +GL P++ +S+ +H + +GG
Sbjct: 566 EIEKGRALFEEIKAQGLTPDVRS-----YSILIHGLVKGG 600
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ IL MS +G ++++ ++ +F + + EA M K + P ++
Sbjct: 152 EQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGA 211
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
A D ++++ G +V + L+ V+A+ R D A LLDEM +N
Sbjct: 212 LSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSN 266
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 1/157 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
V N ++++I+ F + GR +EA E+ + PN T +L A +DE+
Sbjct: 686 AVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEA 745
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
FQ +K+ P+ + Y +++ K +++ A+ EM + MI G
Sbjct: 746 LVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISG 805
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
N + +F++ G YNA++E L
Sbjct: 806 -LARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGL 841
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 4/199 (2%)
Query: 10 ILSRMSE-SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L +M E S + N ++A+I+ + GR +A Y EM++ P+ T ++ +
Sbjct: 235 LLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGF 294
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +G E++ QE+ I P+V+ Y L+ Y K ++ +A L DEM I
Sbjct: 295 CSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNT 354
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVL 187
MI G F ++ E++F + +G + +N L++ +C R + +L
Sbjct: 355 ITYNSMIDG-FCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDG-YCGAKRIDDGTELL 412
Query: 188 DEATKRGLFPELFRHNKLV 206
E T+ GL + +N L+
Sbjct: 413 HEMTETGLVADTTTYNTLI 431
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 14/251 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERT 60
G E A+L RM E G+ N ++ +++ + G A+ +ME++ PN
Sbjct: 192 GRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVI 251
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ G ++ + E++ GI P + Y ++ + S RW +A LL EM
Sbjct: 252 YSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEML 311
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I N + VT + + E + E ++D++ G YN++++
Sbjct: 312 ERKI-NPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRL 370
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV------WSVD-----VHRMWEGGAYTAISVWLNK 229
+ A + +G P++F N L+ +D +H M E G + + N
Sbjct: 371 DAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTY-NT 429
Query: 230 MYEMFMMGEDL 240
+ F + DL
Sbjct: 430 LIHGFCLVGDL 440
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + + M E G+ + ++N +I+ F GR+ EA + EM + + +PN T
Sbjct: 263 GRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTY 322
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ Y E++E + E+ GI+P+ + Y ++ + K NR D A + M T
Sbjct: 323 SALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMAT 382
Query: 122 NRISNIHQVTGQMIKG-----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
S +I G DD + + ++ G YN L+
Sbjct: 383 KGCSPDVFTFNTLIDGYCGAKRIDDGTE------LLHEMTETGLVADTTTYNTLIHGFCL 436
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G A + + G+ P++ N L+
Sbjct: 437 VGDLNAALDLSQQMISSGVCPDIVTCNTLL 466
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + + M G+ N+ +++++I + R +EA + + M P+ T
Sbjct: 519 GKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTF 578
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++S YC AG VD+ E F E+ GI+ + Y L+ + K + A + EM
Sbjct: 579 NTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEM 636
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 1/173 (0%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+GV + ++N +I G+F EA + Y EM PN T ++++ C +DE
Sbjct: 499 NGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDE 558
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136
+ + F + S P V+ + L++ Y K+ R DD L EM I +I
Sbjct: 559 ATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIH 618
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
G F N +F ++ G ++L LW +RA +L++
Sbjct: 619 G-FRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLED 670
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-----------PNERTL 61
+M SGV + + N +++ G+ ++A++ + M+K + D P+ +T
Sbjct: 449 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTY 508
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S G E++E ++E+ GI+P+ + Y ++ K +R D+A + D M +
Sbjct: 509 NILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGS 568
Query: 122 NRIS 125
S
Sbjct: 569 KSFS 572
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/204 (17%), Positives = 81/204 (39%), Gaps = 12/204 (5%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+ G + + +FN +I+ + R ++ + EM + + T ++ +C G
Sbjct: 380 MATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGD 439
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----------N 122
++ + + Q++ SSG+ P ++ LL + + DA + M N
Sbjct: 440 LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFN 499
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+ Q +I G +E + E ++ ++ G Y++++ L +
Sbjct: 500 GVEPDVQTYNILISG-LINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDE 558
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A ++ D + P++ N LV
Sbjct: 559 ATQMFDSMGSKSFSPDVVTFNTLV 582
>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 450
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 5/206 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + Q + S M E G+A N ++N +I+ F GR+ +A + +M + +P+ T
Sbjct: 94 GHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTF 153
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++S G + E+++ E+ I P + Y ++ + K NR+DDA + D M +
Sbjct: 154 NALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 213
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + + + DE + E ++ G YN L+ +
Sbjct: 214 PDVVTFNTIIDVYCRAKRVDEGMQLLRE-----ISRRGLVANTTTYNTLIHGFCEVDNLN 268
Query: 182 RAARVLDEATKRGLFPELFRHNKLVW 207
A + E G+ P+ N L++
Sbjct: 269 AAQDLFQEMISHGVCPDTITCNILLY 294
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 85/219 (38%), Gaps = 36/219 (16%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A++++M G+ + ++ ++ + G + A+ +ME+ P+
Sbjct: 24 GRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIY 83
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C G +++ F E+ GI P+V Y ++ + RW DA LL +M
Sbjct: 84 SAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM-- 141
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ E N ++ +NAL+ A G
Sbjct: 142 -----------------IEREINPDVLT-----------------FNALISASVKEGKLF 167
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
A ++ DE R +FP+ +N +++ H ++ +
Sbjct: 168 EAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH 206
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 7/206 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K +LS+M E+ + + ++A+I+ + G +A + EM + PN T
Sbjct: 59 GDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTY 118
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G +++ +++ I P V+ + L++ K + +A L DEM
Sbjct: 119 NCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLH 178
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
I MI G F + + +++FD + + +N +++ ++C R
Sbjct: 179 RCIFPDTVTYNSMIYG-FCKHNRFDDAKHMFDLMASP----DVVTFNTIID-VYCRAKRV 232
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ ++L E ++RGL +N L+
Sbjct: 233 DEGMQLLREISRRGLVANTTTYNTLI 258
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 57/130 (43%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + M GV ++ + N ++ F + + EEA++ + ++ + D + ++
Sbjct: 271 QDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHG 330
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C VDE+ + F + G+ P V Y ++++ + + DA L +M N
Sbjct: 331 MCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPD 390
Query: 128 HQVTGQMIKG 137
+ +I+G
Sbjct: 391 NSTYNTLIRG 400
>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
Length = 825
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/232 (19%), Positives = 105/232 (45%), Gaps = 34/232 (14%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ R+ +G+ + S+NA+I+ F + G ++A + +ME+ PN T ++++
Sbjct: 210 PVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGL 269
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN------ 122
C +D+++ +++ +G+ P+ M Y L+ Y+ S W ++ + EM ++
Sbjct: 270 CKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDV 329
Query: 123 --------------RISNIHQVTGQMI-KGEFDDESNWQMV-------------EYVFDK 154
RI + M+ KG D ++ + + +F+
Sbjct: 330 GNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNV 389
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ CEG +N L+ A LG+ +++ + ++ TK+G+ P++ + ++
Sbjct: 390 MVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVI 441
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 4/191 (2%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV + FN +I A+ + G ++++ + +M K +P+ T V+S +C G +D++
Sbjct: 394 GVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDA 453
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD--DAYGLLDEMHTNRISNIHQVTGQMI 135
E+F + +G+ P Y L + + NR D A L+ +M + I I
Sbjct: 454 MEKFNHMIDTGVPPDTAVYSCL--IQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSI 511
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
E + V D + G + +N+L++ +G + A +LD G+
Sbjct: 512 INNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGV 571
Query: 196 FPELFRHNKLV 206
P+++ +N LV
Sbjct: 572 EPDIYTYNTLV 582
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/248 (19%), Positives = 110/248 (44%), Gaps = 19/248 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + ++ + +G N +FN++++ + G +EA+ ME V +P+ T
Sbjct: 519 GRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTY 578
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC G +D++ F+++ + + + Y ++L ++ R A + EM
Sbjct: 579 NTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIE 638
Query: 122 NRIS-NIH---QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ ++ +IH V G + + DE+N + +KL + +N ++ A++ +
Sbjct: 639 SGMAVSIHTYATVLGGLCRNNCTDEANM-----LLEKLFSMNVKFDILTFNIVIRAMFKV 693
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSV----------DVHRMWEGGAYTAISVWL 227
G R+ A + + GL P + + ++ ++ ++ E + T S L
Sbjct: 694 GRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRIL 753
Query: 228 NKMYEMFM 235
N++ M +
Sbjct: 754 NEIIRMLL 761
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/240 (18%), Positives = 92/240 (38%), Gaps = 35/240 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM------------ 49
G++KE + MS S + + + N+ + A + GR +EA + M
Sbjct: 308 GMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISY 367
Query: 50 --------------------EKVRCD---PNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
+ C+ P+ +++ Y G++D+S F+++
Sbjct: 368 GALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTK 427
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
G+ P ++ + +++ + + R DDA + M + V +I+G+ + +
Sbjct: 428 QGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVK 487
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
E + D L+ ++F+ +++ L G V+D G P L N LV
Sbjct: 488 AKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLV 547
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + + +S G+ ++ +I + FE+A + MEK C P+ R L
Sbjct: 694 GRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRIL 753
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
++ + G V ++ +I GILP +L+ +++ + ++ + LL E
Sbjct: 754 NEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKYREYIKLLPE 810
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 81/182 (44%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I +R+ R + + + + + P+ + A++ + G VD++ + F ++
Sbjct: 191 TYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKM 250
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ GI+P+V+ Y L+ K+ D A +L +M + + +I G +
Sbjct: 251 EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHG-YSTSGM 309
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
W+ VF +++ + N+ + AL G + A + D +G P++ +
Sbjct: 310 WKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGA 369
Query: 205 LV 206
L+
Sbjct: 370 LL 371
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/245 (18%), Positives = 95/245 (38%), Gaps = 34/245 (13%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE +L M GV + ++N +++ + + GR ++A+ + +M R +
Sbjct: 554 GNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSY 613
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L A +KE F E+ SG+ S+ Y +L ++N D+A LL+++ +
Sbjct: 614 NIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFS 673
Query: 122 NRIS------NI----------------------------HQVTGQMIKGEFDDESNWQM 147
+ NI +T +++ E +++
Sbjct: 674 MNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFED 733
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW 207
+ +F + R N ++ L G +A L + K+G+ PE + L++
Sbjct: 734 ADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIY 793
Query: 208 SVDVH 212
V+
Sbjct: 794 LFSVN 798
>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
[Vitis vinifera]
Length = 875
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 115/270 (42%), Gaps = 35/270 (12%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M +G + +++ V+E G EEA + EM++ P+E ++ ++ G
Sbjct: 545 MQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGN 604
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----------HTN 122
V++S E +Q + ++G+ P+V LL+ + + +R DAY LL M +T
Sbjct: 605 VEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTL 664
Query: 123 RIS---------------NIHQVTGQ--------MIKGEFDDESNWQMVEYVFDKLNCEG 159
+S + VTG M D ++ V D ++ E
Sbjct: 665 LLSCCTEARSSFDMGFCGELMAVTGHPAHMFLLSMPAAGPDGQNVRDHVSKFLDLMHSED 724
Query: 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH-NKLVWSVDVHRMWEGG 218
+A+++ L GL+E A V + A ++ ++P+ R + W +++H M +G
Sbjct: 725 RESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVREKSSCYWLINLHFMSDGT 784
Query: 219 AYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
A TA+S L + ++ +P +V
Sbjct: 785 AVTALSRTLAWFHREMLVSGTVPSRIDIVT 814
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 91/212 (42%), Gaps = 7/212 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M G N ++N +I ++ + EA+ + M++ C P+ T ++ ++
Sbjct: 401 LLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHA 460
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNRISNIH 128
AG +D + +Q+++ + + P Y +++ K+ A+ L EM + N+
Sbjct: 461 KAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNL- 519
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT ++ N+ ++ + G+ Y+ ++E L G E A +
Sbjct: 520 -VTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFT 578
Query: 189 EATKRGLFPELFRHNKLV--WSV--DVHRMWE 216
E ++ P+ + LV W +V + WE
Sbjct: 579 EMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWE 610
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 50/110 (45%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
++G + ++ ++ + +F K EM + C PN T ++ Y A ++
Sbjct: 372 QTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLN 431
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
E+ F ++ +G P + YC L+ ++AK+ D A + +M +S
Sbjct: 432 EAVSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLS 481
>gi|413938979|gb|AFW73530.1| ATP binding protein [Zea mays]
Length = 551
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 107/234 (45%), Gaps = 19/234 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE +A+ R+ + N+++++ + + + ++A+K EM +++ P T
Sbjct: 231 GMVKEAEAVFGRVKRKLLG-NAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTY 289
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGIL---PSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
A + +C AGLV E++E F+ +++ G+ P+ Y +++ AK++R ++ + LL +
Sbjct: 290 VAAIESFCSAGLVSEARELFEFMRTEGLTVSSPTAKTYSIMIVALAKADRMEECFELLSD 349
Query: 119 MHT-----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
M T + + + G + G D V D++ G+ + YN L
Sbjct: 350 MRTCGCMPDVTTYKDLIEGMCLVGRLDAAYR------VLDEMGRAGFPPDIVTYNCFLNV 403
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227
L L + A + + + P + +N L+ G A+ A+ +WL
Sbjct: 404 LCSLRNADDALELCERMIEAHCEPSVHTYNMLMMMF----FEMGEAHRALDIWL 453
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 6/139 (4%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+EC +LS M G + ++ +IE GR + A + EM + P+ T
Sbjct: 341 EECFELLSDMRTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGFPPDIVTYNCF 400
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY---AKSNRWDDAYGLLDEMHT 121
L+V C D++ E + + + PSV Y ML+ ++ +++R D + +D+
Sbjct: 401 LNVLCSLRNADDALELCERMIEAHCEPSVHTYNMLMMMFFEMGEAHRALDIWLEMDKRGC 460
Query: 122 NRISNIHQVTGQMIKGEFD 140
R + +++ MI G FD
Sbjct: 461 QRAIDTYEI---MIYGLFD 476
>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
Length = 532
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M ++G+ N +F+ I A+ + GR +EA +++M+++ P+ T V+ C G
Sbjct: 287 MVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGR 346
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+D++ +F ++ G+ P+++ + L+ ++ +W+ A L EM I +
Sbjct: 347 LDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTA 406
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
MI F E + +FD + G + YN ++ + G ++LD+
Sbjct: 407 MIDRLF-KEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLI 465
Query: 194 GLFPELFRHNKLV 206
GL P N L+
Sbjct: 466 GLKPTAVTFNTLL 478
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 90/214 (42%), Gaps = 11/214 (5%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+A+L +M + + N ++N++I + G++ EA++ EM + PN T ++
Sbjct: 176 EAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDC 235
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SN 126
C +G E++E F + SG P Y LL YA + + D M N + SN
Sbjct: 236 LCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSN 295
Query: 127 IHQVTGQMIK----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
H + ++ G D+ S F K+ G+ + Y +++ L +G +
Sbjct: 296 HHTFSIEIYAYCKCGRLDEAS------LTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDD 349
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
A + GL P + L+ ++ WE
Sbjct: 350 AMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWE 383
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 100/249 (40%), Gaps = 17/249 (6%)
Query: 5 KECQAILSRMSESGVARNSD--SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+E ++ M+E G D S++ VI F + G +A + +M PN T
Sbjct: 101 EEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCN 160
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+V+ C +D+++ Q++ I+P+ Y L+ Y S +W +A +L EM +
Sbjct: 161 SVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRD 220
Query: 123 ----RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ + + + K F E+ +F+ + G Y +LL G
Sbjct: 221 GQRPNVVTYNMLIDCLCKSGFHAEARE-----IFNSMIQSGPKPDATTYGSLLHGYATEG 275
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238
V D + G+ R N +S++++ + G S+ KM ++ M
Sbjct: 276 NLVEMNNVKDLMVQNGM-----RSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFM-P 329
Query: 239 DLPQLATVV 247
D+ TV+
Sbjct: 330 DIVTYTTVI 338
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 11/184 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +M + G + ++ VI+ + GR ++A+ + +M PN T
Sbjct: 310 GRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITF 369
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
++ + G ++++E F E+ GI P V + ++ K + +A L D M
Sbjct: 370 TTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPR 429
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N +S + G I GE + V + D + G +N LL+ +
Sbjct: 430 AGAKPNVVSYNTMIHGYFIAGEVGE------VMKLLDDMLLIGLKPTAVTFNTLLDGMVS 483
Query: 177 LGLR 180
+GL+
Sbjct: 484 MGLK 487
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M ++ + ++ +I+ F QGG+ E + EM P+E T ++ VYC AG
Sbjct: 389 MLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGE 448
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ + E+ G+ P+++ Y L+ K D A LLDEM + +
Sbjct: 449 MVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNS 508
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
M+ G N + + ++ G Y +++A LG ++A ++L E R
Sbjct: 509 MVNG-ICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDR 567
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGG 218
GL P + N L+ + M E G
Sbjct: 568 GLQPTVVTFNVLMNGFCMLGMLEDG 592
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 87/198 (43%), Gaps = 3/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + G+ N +N+++ + G E+AIK EME DP+ T V+ YC
Sbjct: 490 LLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYC 549
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +D++ + QE+ G+ P+V+ + +L+ + +D LL M I
Sbjct: 550 RLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVP-DA 608
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL-D 188
+T + + ++ ++ ++ +G YN L++ C + A L
Sbjct: 609 ITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKG-HCKARNLKEAWFLYK 667
Query: 189 EATKRGLFPELFRHNKLV 206
E ++G P + +N L+
Sbjct: 668 EMIEKGYVPTVTSYNALI 685
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE +L +M + S++ VI+ + G ++A+K +M+ PN T
Sbjct: 272 GKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTY 331
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ + C G E+++ +E+ S I+P + Y L+ + K A DEM +
Sbjct: 332 NSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLS 391
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+IS + +I+G F + +F ++ G Y L++ G
Sbjct: 392 KKISPDYITYTTLIQG-FGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMV 450
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + +E + G+ P + + L+
Sbjct: 451 NAFSLHNEMVQMGMTPNIVTYGALI 475
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ ++ +L M E G+ ++ ++N +++ K Y M P+ T
Sbjct: 587 GMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTY 646
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +C A + E+ ++E+ G +P+V Y L+ + K ++ +A L +EM
Sbjct: 647 NILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEM 704
>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
Length = 977
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 5/232 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +A+ + M + + + +++ + + G E+A + Y M PN T
Sbjct: 670 GYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTC 729
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++LS + + E+ E Q + + G+ PS+ Y +LL+ D G ++
Sbjct: 730 NSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLD-MGFCGQLMA 788
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ H +M D E+ D ++ E +A+++ L G +E
Sbjct: 789 STGHPAHMFLLKMPAAGPDGENVRNHANNFLDLMHSEDRESKRGLVDAVVDFLHKSGQKE 848
Query: 182 RAARVLDEATKRGLFPELFRHNKLV-WSVDVHRMWEGGAYTAIS---VWLNK 229
A V + A ++ +FP+ R W +++H M EG A TA+S W K
Sbjct: 849 EAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAWFRK 900
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 49/110 (44%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
+ G + ++ ++ + +F K EM + C PN T ++ Y A ++
Sbjct: 474 QPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLN 533
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
E+ F +++ +G P + YC L+ ++AK+ D A + M +S
Sbjct: 534 EAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS 583
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 99/217 (45%), Gaps = 8/217 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + + ++ SGV ++ ++ ++I F++A + + +M + C P+ T
Sbjct: 336 AGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVT 395
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G+++E+ + +++ G +P V+ Y ++ KS+R ++A L +EM
Sbjct: 396 YNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEME 455
Query: 121 -----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVF---DKLNCEGYGLGMRFYNALLE 172
NR S+ + G + + D ++ F ++ +G+ + Y+ L+
Sbjct: 456 RLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLIS 515
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
L + + A +L++ KR P + N L+ +
Sbjct: 516 GLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGL 552
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + +LS M G+A N ++ A++ + R EA + +M+ C PN T
Sbjct: 590 AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFT 649
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
A++ +C AG VD + F E+ +GI P + Y L A KS R A +L E
Sbjct: 650 YTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILRE 707
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE + +L M SG + + ++N ++ + G+ E A + +M PN T
Sbjct: 555 AGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVT 614
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++S C A + E+ F ++KSSG P++ Y L+ + + + D L EM
Sbjct: 615 YTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV 674
Query: 121 TNRISNIHQVTGQM 134
IS H V G +
Sbjct: 675 CAGISPDHVVYGTL 688
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 7/187 (3%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N VI Q R +EA++ + +M + P+ + ++ AG +++++ FQ++
Sbjct: 291 YNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLL 350
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
SG+ PS + Y L+ +N +DDA L +M+ R VT ++ D
Sbjct: 351 HSGVTPSTVAYTSLIHGLCMANSFDDARELFADMN-RRGCPPSPVTYNVM---IDASCKR 406
Query: 146 QMVEYVFD---KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
M+E D K+ +G+ + YN +++ L E A + +E + G P H
Sbjct: 407 GMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSH 466
Query: 203 NKLVWSV 209
N ++ +
Sbjct: 467 NTIILGL 473
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 11/202 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L RM++ G + +++ +I R ++A +M K +C P T
Sbjct: 486 GKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQ 545
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
++ C AG + E++E + SSG P V+ Y L+ + ++ + + A LL +M
Sbjct: 546 NTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVA 605
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
N ++ V+G + VF ++ G + Y AL+
Sbjct: 606 RGLAPNVVTYTALVSGLCKANRLPEACG------VFAQMKSSGCAPNLFTYTALILGFCS 659
Query: 177 LGLRERAARVLDEATKRGLFPE 198
G + ++ E G+ P+
Sbjct: 660 AGQVDGGLKLFGEMVCAGISPD 681
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
MSE + + S ++V+ GR +EA++ Y E + +P TL +L +C G
Sbjct: 171 MSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRR---EPCLVTLNVLLEGFCSRGQ 227
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
VD+++E + + P + YC +L K+ R ++A L +
Sbjct: 228 VDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGD 272
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 93/216 (43%), Gaps = 17/216 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE--- 58
G + + +L M + A + S+ V++ + GR EEA++ + + E +
Sbjct: 226 GQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSP 285
Query: 59 ---RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
R V+ C +DE+ + F+++ + P Y +L+ AK+ + +DA L
Sbjct: 286 PSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNL 345
Query: 116 LDE-MHT----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
+ +H+ + ++ + G + FDD +F +N G YN +
Sbjct: 346 FQKLLHSGVTPSTVAYTSLIHGLCMANSFDD------ARELFADMNRRGCPPSPVTYNVM 399
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
++A G+ E A ++ + + G P++ +N ++
Sbjct: 400 IDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 435
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 10/218 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVI---------EAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
+ + M G N S N +I + Q G+ +EA + M P+ T
Sbjct: 450 LFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVT 509
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S C VD+++ +++ P+V+ L+ K+ R +A +LD M
Sbjct: 510 YSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMV 569
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
++ S ++ G + E + D + G + Y AL+ L
Sbjct: 570 SSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVA-RGLAPNVVTYTALVSGLCKANRL 628
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A V + G P LF + L+ +GG
Sbjct: 629 PEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGG 666
>gi|452819918|gb|EME26968.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 466
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-PNERTLEAVLSVYCFAGLVDESKEQ 80
N +NA+I+ + R E+A+K Y E++ + P+E T A+L Y AG + + E
Sbjct: 247 NKVVYNAMIDICSRTDRMEQALKLYQELKLENGETPDEYTYNAILKGYARAGNLQSAIEV 306
Query: 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140
++ S GI+P + Y +L+ K R D+A+G +EM I + +T ++
Sbjct: 307 SNQMHSEGIIPRAITYSVLIDSLGKCKRLDEAFGFFEEMEAKGIQP-NVITFNVLLSACA 365
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
+N+ + D + G YNAL++A
Sbjct: 366 ASNNYTRALVIVDWMEERGVAFDRYTYNALMQA 398
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E+G + ++NA+++ + + G + AI+ +M P T ++ +D
Sbjct: 277 ENGETPDEYTYNAILKGYARAGNLQSAIEVSNQMHSEGIIPRAITYSVLIDSLGKCKRLD 336
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
E+ F+E+++ GI P+V+ + +LL+ A SN + A ++D M
Sbjct: 337 EAFGFFEEMEAKGIQPNVITFNVLLSACAASNNYTRALVIVDWM 380
>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 5/232 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +A+ + M + + + +++ + + G E+A + Y M PN T
Sbjct: 553 GYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTC 612
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++LS + + E+ E Q + + G+ PS+ Y +LL+ D G ++
Sbjct: 613 NSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLD-MGFCGQLMA 671
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ H +M D E+ D ++ E +A+++ L G +E
Sbjct: 672 STGHPAHMFLLKMPAAGPDGENVRNHANNFLDLMHSEDRESKRGLVDAVVDFLHKSGQKE 731
Query: 182 RAARVLDEATKRGLFPELFRHNKLV-WSVDVHRMWEGGAYTAIS---VWLNK 229
A V + A ++ +FP+ R W +++H M EG A TA+S W K
Sbjct: 732 EAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAWFRK 783
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 49/110 (44%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
+ G + ++ ++ + +F K EM + C PN T ++ Y A ++
Sbjct: 357 QPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLN 416
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
E+ F +++ +G P + YC L+ ++AK+ D A + M +S
Sbjct: 417 EAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS 466
>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 654
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 2/188 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + G + F +++A + G +EA + +M + R P+ + ++L +C
Sbjct: 214 VLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDM-RYRWKPSVKHFTSLLYGWC 272
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + E+K ++K GI P ++ Y LL YA++ + DAY LL EM R
Sbjct: 273 KEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRKRCEPNAT 332
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I+ E + +F ++ G + Y+ L+ G +R +LDE
Sbjct: 333 SYTVLIQSLCKHE-RLEEATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLDE 391
Query: 190 ATKRGLFP 197
++G FP
Sbjct: 392 MIQQGHFP 399
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 88/197 (44%), Gaps = 3/197 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L +M + G+ + +N ++ + Q G+ +A EM + RC+PN +
Sbjct: 275 GKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRKRCEPNATSY 334
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
++ C ++E+ F E++++G V+ Y L++ + K + Y LLDEM
Sbjct: 335 TVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLDEMIQ 394
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N QV Q I + + + + + +++ G + YN ++ LG
Sbjct: 395 QGHFPN--QVIYQHIMLAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEV 452
Query: 181 ERAARVLDEATKRGLFP 197
+ ++ +E GL P
Sbjct: 453 KEGIQLWNEMESSGLSP 469
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 4/184 (2%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE 83
+FN +++A + GR EEA + + M +C PN T V++ C G +D + E
Sbjct: 102 TFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDL 161
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143
+ +G P+V+ Y +L+ K+ R D + LL EM + ++ G
Sbjct: 162 MNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRR 221
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEATKRGLFPELFRH 202
+ +E V + Y + YN+L+E L+C + +RA R++ ++RG P++ +
Sbjct: 222 LDEALELVQLMIRSGCYPT-VVTYNSLME-LFCRSKQVDRAFRLIQVMSERGCPPDVINY 279
Query: 203 NKLV 206
N ++
Sbjct: 280 NTVI 283
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 105/257 (40%), Gaps = 54/257 (21%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
N + + G+ +A++ + E RC PNE T +++ C AG +D++ E E++
Sbjct: 1 MNCALNLLVRAGQHGQAVQLFREE---RCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57
Query: 86 SSGILPSV-----------------------------------MCYCMLLAVYAKSNRWD 110
GI P V + + +L+ KS R +
Sbjct: 58 DRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVE 117
Query: 111 DAYGLLDEMHTNR--ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYN 168
+A+ + + MHT+ + N+ T +I G D + +E + D +N G + Y+
Sbjct: 118 EAFQIFESMHTSSQCLPNVVTYT-TVINGLCKDGKLDRAIE-LLDLMNETGCCPNVITYS 175
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHR-----------MWEG 217
L+E L G ++ +L E T+RG P++ +N L+ + R M
Sbjct: 176 VLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRS 235
Query: 218 GAYTAISVWLNKMYEMF 234
G Y + + N + E+F
Sbjct: 236 GCYPTVVTY-NSLMELF 251
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 18/210 (8%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGR------FEEAIKAYVEMEKVRCDPNERTL 61
QA+L +M + + +++ +I+ + R E A + M++ C PN T
Sbjct: 296 QALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTY 355
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD---- 117
V+ C A ++ + + S ++P + + M++ KS+ D AY +
Sbjct: 356 AVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSE 415
Query: 118 -EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
E N ++ + G GE D VF+ L E + G+ YN++L+ L
Sbjct: 416 RECKPNPVAYAALIDGLSKGGEVDKAVR------VFE-LMVESFRPGVATYNSVLDGLCG 468
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G E A R+++ + FP+ + L+
Sbjct: 469 VGRIEEAVRMVEGMIHKECFPDGASYGALI 498
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M+E+G N +++ ++E + GR ++ EM + P+ +L+ C
Sbjct: 158 LLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLC 217
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ +DE+ E Q + SG P+V+ Y L+ ++ +S + D A+ L+ M
Sbjct: 218 KSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVM 267
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L M+ G + +N ++ + R +EA++ M + C P T +++ ++
Sbjct: 192 TLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELF 251
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C + VD + Q + G P V+ Y ++A + R DDA LL +M R
Sbjct: 252 CRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDV 311
Query: 129 QVTGQMIKGEFDD---ESNWQM 147
+I G D +++W++
Sbjct: 312 ITYSTIIDGLCKDWRVDADWKL 333
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q S + S N ++ VI + G+ + AI+ M + C PN T ++
Sbjct: 121 QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEG 180
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C AG D+ QE+ G P V+ Y LL KS R D+A L+ M
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N+V++ GR EEA++ M C P+ + A++ C V+E+ E FQ +
Sbjct: 458 TYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAV 517
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ G V Y +L+ K R DA+G+ +++
Sbjct: 518 EAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKL 552
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 2/166 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L RM +S V + SF+ VI + + + A K + M + C PN A++
Sbjct: 373 ALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL 432
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G VD++ F E+ P V Y +L R ++A +++ M
Sbjct: 433 SKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDG 491
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
G +I+G + E +F + +G+ + + YN L+ L
Sbjct: 492 ASYGALIRGLCRVSCVEEAYE-LFQAVEAKGFAMEVGVYNVLVNEL 536
>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
Length = 754
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 106/234 (45%), Gaps = 34/234 (14%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ R+ +G+ + S+NA+I+ F + G ++A + +ME+ PN T ++++
Sbjct: 139 PVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGL 198
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN------ 122
C +D+++ +++ +G+ P+ M Y L+ Y+ S W ++ + EM ++
Sbjct: 199 CKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDV 258
Query: 123 --------------RISNIHQVTGQMI-KGEFDDESNWQMV-------------EYVFDK 154
RI + M+ KG D ++ + + +F+
Sbjct: 259 GNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNV 318
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
+ CEG +N L+ A LG+ +++ + ++ TK+G+ P++ + ++ +
Sbjct: 319 MVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISA 372
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 4/191 (2%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV + FN +I A+ + G ++++ + +M K +P+ T V+S +C G +D++
Sbjct: 323 GVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDA 382
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD--DAYGLLDEMHTNRISNIHQVTGQMI 135
E+F + +G+ P Y L + + NR D A L+ +M + I I
Sbjct: 383 MEKFNHMIDTGVPPDTAVYSCL--IQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSI 440
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
E + V D + G + +N+L++ +G + A +LD G+
Sbjct: 441 INNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGV 500
Query: 196 FPELFRHNKLV 206
P+++ +N LV
Sbjct: 501 EPDIYTYNTLV 511
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/248 (19%), Positives = 110/248 (44%), Gaps = 19/248 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + ++ + +G N +FN++++ + G +EA+ ME V +P+ T
Sbjct: 448 GRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTY 507
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC G +D++ F+++ + + + Y ++L ++ R A + EM
Sbjct: 508 NTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIE 567
Query: 122 NRIS-NIH---QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ ++ +IH V G + + DE+N + +KL + +N ++ A++ +
Sbjct: 568 SGMAVSIHTYATVLGGLCRNNCTDEANM-----LLEKLFSMNVKFDILTFNIVIRAMFKV 622
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSV----------DVHRMWEGGAYTAISVWL 227
G R+ A + + GL P + + ++ ++ ++ E + T S L
Sbjct: 623 GRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRIL 682
Query: 228 NKMYEMFM 235
N++ M +
Sbjct: 683 NEIIRMLL 690
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/240 (18%), Positives = 92/240 (38%), Gaps = 35/240 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM------------ 49
G++KE + MS S + + + N+ + A + GR +EA + M
Sbjct: 237 GMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISY 296
Query: 50 --------------------EKVRCD---PNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
+ C+ P+ +++ Y G++D+S F+++
Sbjct: 297 GALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTK 356
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
G+ P ++ + +++ + + R DDA + M + V +I+G+ + +
Sbjct: 357 QGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVK 416
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
E + D L+ ++F+ +++ L G V+D G P L N LV
Sbjct: 417 AKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLV 476
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + + +S G+ ++ +I + FE+A + MEK C P+ R L
Sbjct: 623 GRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRIL 682
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
++ + G V ++ +I GILP +L+ +++ + ++ + LL E
Sbjct: 683 NEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKYREYIKLLPE 739
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 81/182 (44%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I +R+ R + + + + + P+ + A++ + G VD++ + F ++
Sbjct: 120 TYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKM 179
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ GI+P+V+ Y L+ K+ D A +L +M + + +I G +
Sbjct: 180 EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHG-YSTSGM 238
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
W+ VF +++ + N+ + AL G + A + D +G P++ +
Sbjct: 239 WKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGA 298
Query: 205 LV 206
L+
Sbjct: 299 LL 300
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/245 (18%), Positives = 95/245 (38%), Gaps = 34/245 (13%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE +L M GV + ++N +++ + + GR ++A+ + +M R +
Sbjct: 483 GNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSY 542
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L A +KE F E+ SG+ S+ Y +L ++N D+A LL+++ +
Sbjct: 543 NIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFS 602
Query: 122 NRIS------NI----------------------------HQVTGQMIKGEFDDESNWQM 147
+ NI +T +++ E +++
Sbjct: 603 MNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFED 662
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW 207
+ +F + R N ++ L G +A L + K+G+ PE + L++
Sbjct: 663 ADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIY 722
Query: 208 SVDVH 212
V+
Sbjct: 723 LFSVN 727
>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 1/182 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SFN ++ A+ +GG+ E A + EM++ C P T L V +G +++ F+E+
Sbjct: 138 SFNVLMAAYSRGGQLERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREM 197
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
++ G+ P+V + +++ +Y K++ A L M + T + E N
Sbjct: 198 QNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMR-KALCPPSLFTYTALINAHAREGN 256
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
E +F +L G+ + YNALLEA G A V + + G+ + +N
Sbjct: 257 CVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNI 316
Query: 205 LV 206
L+
Sbjct: 317 LI 318
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 1/198 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + M E+GV + S+N +I+AF + G +A Y M+KV P ++
Sbjct: 289 GGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKS 348
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+LS + AG V +++ + ++S G+ P + LL Y S R D L + M
Sbjct: 349 HILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQ 408
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + +T + + + E +F+ L +G+ + + +L+ A L
Sbjct: 409 GS-VCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRKLY 467
Query: 181 ERAARVLDEATKRGLFPE 198
+ V + G P+
Sbjct: 468 RKCVSVYQKMLIAGCIPD 485
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
FN +++A+ + ++ EA + M+K +C P E + +++ Y G ++ ++ E+K
Sbjct: 104 FNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQLERAERVLHEMK 163
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
S P ++ Y L V KS W A + EM + MI + +
Sbjct: 164 ESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMIN-IYGKAHHS 222
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
E++F + + Y AL+ A G RA + E G P+++ +N L
Sbjct: 223 AKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNAL 282
Query: 206 V 206
+
Sbjct: 283 L 283
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/244 (16%), Positives = 102/244 (41%), Gaps = 14/244 (5%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
+ I + + G + ++NA++EA+ +GG A + + M + + + ++
Sbjct: 260 AEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILID 319
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+ AGL+ +++ + +K G P++ + +LL+ + K+ R DA + + + +
Sbjct: 320 AFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEP 379
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ ++ G + + +E +++ + + N L+ G ERA +
Sbjct: 380 DTFMFNSLL-GAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEI 438
Query: 187 LDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLN--KMYEMFMMGEDLPQLA 244
+ +G P++ L+ GAY+ ++ +Y+ ++ +P A
Sbjct: 439 FNSLESKGFTPDVMSWTSLM-----------GAYSKRKLYRKCVSVYQKMLIAGCIPDRA 487
Query: 245 TVVV 248
T V
Sbjct: 488 TAKV 491
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 84/203 (41%), Gaps = 3/203 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + + +L M ES + ++N +E + G ++ A + EM+ P T
Sbjct: 149 GGQLERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNT 208
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++++Y A +++ FQ ++ + PS+ Y L+ +A+ A + E+
Sbjct: 209 FTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQ 268
Query: 121 T-NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + +I+ T + + + + VF+ + G YN L++A GL
Sbjct: 269 SVGFVPDIY--TYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGL 326
Query: 180 RERAARVLDEATKRGLFPELFRH 202
A + D K G P + H
Sbjct: 327 ISDAQAIYDSMKKVGFKPTMKSH 349
>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 15/231 (6%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I ++M SG N + ++EA + +F+EA M K C P+ T A + C
Sbjct: 409 IWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLC 468
Query: 70 FAGLVDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
AG +D +++ F++++ P+++ Y LL AK+NR ++AYGL E+ +
Sbjct: 469 DAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSS 528
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G + ++ V K+ +G N ++ A G ERAA++LD
Sbjct: 529 STYNTLLHGSCNAGLPGIALQLV-GKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLD 587
Query: 189 EAT--KRGLFPELFRHNKLVWS-----------VDVHRMWEGGAYTAISVW 226
+ +R P++ + ++W + + RM G +I+ W
Sbjct: 588 LVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATW 638
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 119/284 (41%), Gaps = 52/284 (18%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Q +L +M G + D F +VI +RQ G E A++ + +++ CDP+ +
Sbjct: 90 GQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIY 149
Query: 62 EAVLSVYCFAGLVDESKEQ-----FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
VL L+ E++ Q ++++K G P+V Y +LL K+N+ D A LL
Sbjct: 150 NHVLDT-----LLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLL 204
Query: 117 DEM-----------HTNRISNIHQVT-------------------GQMIKG---EFDDES 143
EM +T IS++ +V +I G E D +
Sbjct: 205 VEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKG 264
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
++++ + +K G + Y+ L+ L G E A L + KRG P ++ +
Sbjct: 265 AFELMREMVEK----GISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLS 320
Query: 204 KLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVV 247
LV G + A+ +W N+M F + ++ T+V
Sbjct: 321 SLVKGC----FLRGTTFDALDLW-NQMIRGFGLQPNVVAYNTLV 359
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 81/179 (45%), Gaps = 2/179 (1%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G+ N ++N +++ F G +A+ + ME++ C PN RT ++++ + G +D +
Sbjct: 347 GLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGA 406
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ ++ +SG P+V+ Y ++ + +++ +A L++ M + IKG
Sbjct: 407 VYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKG 466
Query: 138 EFDDESNWQMVEYVFDKLNCEGY-GLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
D E VF ++ + + YN LL+ L E A + E RG+
Sbjct: 467 -LCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGV 524
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 84/204 (41%), Gaps = 2/204 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
YK ++ M E G++ N S++ +I G+ E A +M K C PN TL +
Sbjct: 262 YKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSS 321
Query: 64 VLSVYCFAGLVDESKEQF-QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ G ++ + + Q I+ G+ P+V+ Y L+ + A + M
Sbjct: 322 LVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEI 381
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
S + G +I G F + Y+++K+ G + Y ++EAL +
Sbjct: 382 GCSPNIRTYGSLING-FAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKE 440
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A +++ +K P + N +
Sbjct: 441 AESLIEIMSKENCAPSVPTFNAFI 464
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 6/225 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + +L M ESG+ + ++N++IE F G A + +V M C+P+ + ++
Sbjct: 278 EAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLI 337
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ Y V+E+ + + E+ G P+V+ Y LL + + DDA L M + I+
Sbjct: 338 NGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIA 397
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G + G ++ ++ ++ +F +L + L + N L++ L G E A
Sbjct: 398 ENSYTYGIFLDGLCKNDCLFEAMK-LFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWE 456
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
+ ++ + G P N + +++ +H G +V + KM
Sbjct: 457 LFEKLSNEGHEP-----NVVTYTIMIHGFCREGQVDKANVLIQKM 496
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 96/198 (48%), Gaps = 11/198 (5%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G + S+N +I + + + EEA+K Y EM V PN T +++L AG
Sbjct: 321 MPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGK 380
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR----ISNIHQ 129
VD++K+ F +K+ GI + Y + L K++ +A L E+ ++ I N++
Sbjct: 381 VDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNC 440
Query: 130 VTGQMIK-GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ + K G+ E+ W++ F+KL+ EG+ + Y ++ G ++A ++
Sbjct: 441 LIDGLCKAGKL--ETAWEL----FEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQ 494
Query: 189 EATKRGLFPELFRHNKLV 206
+ G P++ +N L+
Sbjct: 495 KMEANGCTPDIITYNTLM 512
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 58/120 (48%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + + S ++ N +I+ + G+ E A + + ++ +PN T ++
Sbjct: 418 EAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMI 477
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+C G VD++ Q+++++G P ++ Y L+ + +SN+ ++ LL M +S
Sbjct: 478 HGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVS 537
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM------EKVRCDPNER 59
E + RM + G + ++ +I+ G A+K + EM ++ C PN
Sbjct: 157 EATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVI 216
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM 94
T ++ C G DE+K+ F+E+K+ G++P+ M
Sbjct: 217 TYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEM 251
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 87/219 (39%), Gaps = 17/219 (7%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y + ++ ++M SG++ + + N ++ R E A+ + + PN T
Sbjct: 85 YSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNT 144
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ C + E+ F ++ G P V+ Y L+ + + A L EM N
Sbjct: 145 LIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEM-LND 203
Query: 124 IS------NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY--------GL--GMRFY 167
IS + +T +I + +F+++ +G GL M +
Sbjct: 204 ISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTF 263
Query: 168 NALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
N L++ L G A ++L + G+ P+L +N L+
Sbjct: 264 NVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLI 302
>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
Length = 831
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 1/199 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + +M + N ++NA + + GR +A Y EM C P+ T ++
Sbjct: 502 EKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHG 561
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ A D++ E F+ + S G P+ + Y LL K ++ D+A+ L +M R +
Sbjct: 562 FSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM-VERGCDP 620
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+VT + F + + VFD++ +G+ + YN LL+ + G A ++
Sbjct: 621 DRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLF 680
Query: 188 DEATKRGLFPELFRHNKLV 206
R P+ HN ++
Sbjct: 681 QVMVSRQCKPDTVSHNIMI 699
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 2/199 (1%)
Query: 9 AILSRM-SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
AI S M SE + S++ +I+ F + A K Y +M + C PN T A L+
Sbjct: 467 AIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNG 526
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
G + +++ ++E+ ++G P V+ Y L+ ++ + + D A+ L + M +R
Sbjct: 527 LMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETM-ISRGCRP 585
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ VT + ES +F K+ G Y LL +G E+A V
Sbjct: 586 NAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVF 645
Query: 188 DEATKRGLFPELFRHNKLV 206
DE +G P++ +N L+
Sbjct: 646 DEMVSKGHDPDVVAYNCLL 664
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 91/207 (43%), Gaps = 2/207 (0%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + + M G N+ ++N ++ + + +EA + + +M + CDP+ T
Sbjct: 568 HDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTT 627
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+L +C G ++++ E F E+ S G P V+ Y LL + ++ + +A L M + +
Sbjct: 628 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQ 687
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE-GYGLGMRFYNALLEALWCLGLRER 182
MI G + VE VF+++ + G + YN+L+ L
Sbjct: 688 CKPDTVSHNIMIDGLSKAKRLDDAVE-VFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSE 746
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSV 209
A +V E + L P+ N L+ ++
Sbjct: 747 AMKVFKEIDRLKLSPDPHAFNVLLEAI 773
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + Q + M +G + + +++ +I F + ++A + + M C PN T
Sbjct: 531 GRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTY 590
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L C DE+ E F+++ G P + Y LL + + + A + DEM
Sbjct: 591 NCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEM 648
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 15/201 (7%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+E G + +++ +I + G+ EA++ EM + +P+ T ++ C AG
Sbjct: 1 MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRISNIH 128
VDE+ E F ++ G + + Y L+ K + AY LL+EM + + I+
Sbjct: 61 VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA---AR 185
++G G+ + + FD + GY + YN LL+AL+ G A +
Sbjct: 121 ILSGLCRMGKVSEAKQF------FDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFK 174
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+D A R + P+L +N L+
Sbjct: 175 TMDMA-DRKVAPDLITYNTLI 194
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 1/193 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + +M +SG A N +++ V+ + G ++ Y EM + R P+ AV+
Sbjct: 240 EAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVI 299
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ C A VD++ + +E+ G +P V+ Y +LL K+N D A+ L M N +
Sbjct: 300 DMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCA 359
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V+ ++ + +FD++ + +N L++ L G + A
Sbjct: 360 P-DIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKD 418
Query: 186 VLDEATKRGLFPE 198
+LD ++ + P+
Sbjct: 419 LLDVMSEHNVLPD 431
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 10/192 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + +M E G + N+ ++NA+I + E A K EM +P+ T
Sbjct: 58 AGKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNIT 117
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD--E 118
+LS C G V E+K+ F + S G P V+ Y LL K + +A+GL +
Sbjct: 118 YNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMD 177
Query: 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
M +++ +I G E + ++ +F + +GY YN++L LG
Sbjct: 178 MADRKVAPDLITYNTLIDGFCRVEKTDEAMK-LFKDVIAKGYMPDTVTYNSIL-----LG 231
Query: 179 LRERAARVLDEA 190
L ++ +DEA
Sbjct: 232 LARKSN--MDEA 241
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G C + M+E + + NAVI+ + + ++A K EM K+ P+ T
Sbjct: 271 GNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTY 330
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L C LVD++ E F + +G P ++ Y ++L K+N+ DA L D M
Sbjct: 331 NILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRM 388
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 9/193 (4%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
G ++ ++N+++ + +EA + + +M C PN T VLS +C G +
Sbjct: 217 GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARC 276
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
E ++E+ P V+ ++ + K+ + DDA+ +L+EM ++I + V I
Sbjct: 277 LELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEM--SKIGAVPDVVTYNIL- 333
Query: 138 EFDDESNWQMVEY---VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL-DEATKR 193
D +V+ +F + G + Y+ +L L C + ARVL D +R
Sbjct: 334 -LDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGL-CKTNKVHDARVLFDRMIER 391
Query: 194 GLFPELFRHNKLV 206
L P++ N L+
Sbjct: 392 KLVPDVVTFNILM 404
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/207 (18%), Positives = 96/207 (46%), Gaps = 3/207 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEA--IKAYVEMEKVRCDPNER 59
G E + M G + + ++N +++A + G+ EA + ++M + P+
Sbjct: 129 GKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLI 188
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T ++ +C DE+ + F+++ + G +P + Y +L A+ + D+A + +M
Sbjct: 189 TYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKM 248
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ + ++ G + + +E +++++ + + + NA+++ L
Sbjct: 249 VDSGCAPNGATYSIVLSGHCRVGNMARCLE-LYEEMTEKRFSPDVLLCNAVIDMLCKAKK 307
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A +VL+E +K G P++ +N L+
Sbjct: 308 VDDAHKVLEEMSKIGAVPDVVTYNILL 334
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M++ VA + ++N +I+ F + + +EA+K + ++ P+ T ++L
Sbjct: 178 MADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSN 237
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN----IHQ 129
+DE++E F+++ SG P+ Y ++L+ + + L +EM R S +
Sbjct: 238 MDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNA 297
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V + K + D+++ V ++++ G + YN LL+ L L ++A +
Sbjct: 298 VIDMLCKAKKVDDAHK-----VLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFST 352
Query: 190 ATKRGLFPELFRH----NKLVWSVDVH 212
G P++ + N L + VH
Sbjct: 353 MVDNGCAPDIVSYSVVLNGLCKTNKVH 379
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 87/208 (41%), Gaps = 7/208 (3%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L + + S M ++G A + S++ V+ + + +A + M + + P+ T
Sbjct: 342 LVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFN 401
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-HT 121
++ C AG +DE+K+ + +LP + L+ + R D+A L M
Sbjct: 402 ILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEK 461
Query: 122 NRISNI--HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG-YGLGMRFYNALLEALWCLG 178
++++ H + ++ G + Q + + + +G + + Y L+ AL G
Sbjct: 462 GTVADVLPHNI---VLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAG 518
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
++A + T G P+ +N L+
Sbjct: 519 RVDQAVDYFQQMTGSGCAPDYVAYNTLM 546
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 1/199 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + +M + N ++NA + + GR +A Y EM C P+ T ++
Sbjct: 177 EKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHG 236
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+ A D++ E F+ + S G P+ + Y LL K ++ D+A+ L +M R +
Sbjct: 237 FSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM-VERGCDP 295
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+VT + F + + VFD++ +G+ + YN LL+ + G A ++
Sbjct: 296 DKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLF 355
Query: 188 DEATKRGLFPELFRHNKLV 206
R P+ HN ++
Sbjct: 356 QVMVSRECKPDTVSHNIMI 374
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 2/199 (1%)
Query: 9 AILSRM-SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
AI S M SE V + S++ +I+ F + A K Y +M + C PN T A L+
Sbjct: 142 AIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNG 201
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
G + +++ ++E+ S+G P V+ Y L+ ++ + + D A+ L + M +R
Sbjct: 202 LMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAM-ISRGCRP 260
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ VT + ES +F K+ G Y LL +G E+A V
Sbjct: 261 NAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVF 320
Query: 188 DEATKRGLFPELFRHNKLV 206
DE +G P++ +N L+
Sbjct: 321 DEMVSKGHDPDVVAYNCLL 339
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 6/200 (3%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+A++SR G N+ ++N ++ + + +EA + + +M + CDP++ T +L
Sbjct: 251 EAMISR----GCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYG 306
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
+C G ++++ E F E+ S G P V+ Y LL + ++ + +A L M +
Sbjct: 307 FCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPD 366
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCE-GYGLGMRFYNALLEALWCLGLRERAARV 186
MI G + VE VF+++ + G + YN+L+ L A +V
Sbjct: 367 TVSHNIMIDGLSKAKRLDDAVE-VFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKV 425
Query: 187 LDEATKRGLFPELFRHNKLV 206
E + L P+ N L+
Sbjct: 426 FKEIDRLKLSPDPHAFNVLL 445
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + Q + M +G + + +++ +I F + ++A + + M C PN T
Sbjct: 206 GRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTY 265
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L C DE+ E F+++ G P + Y LL + + + A + DEM
Sbjct: 266 NCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEM 323
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 93/199 (46%), Gaps = 1/199 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ S+M + G+ ++ +FN +I + G+F +A++ + + E C P T +++
Sbjct: 151 SVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGL 210
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G + F++++ +G P+V+ Y +L+ K ++A + M RIS
Sbjct: 211 CKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDI 270
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+I+G + W+ + +++ + +N L++A+ G A V
Sbjct: 271 FTYNSLIQG-LCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFK 329
Query: 189 EATKRGLFPELFRHNKLVW 207
T+ G+ P++ ++ L++
Sbjct: 330 TMTEMGVEPDVVTYSSLMY 348
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 3/199 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E Q + M+E GV + ++++++ + EA K + M C P+ +
Sbjct: 319 GKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSY 378
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC A +DE+K+ F E+ G+ P + Y L+ + R +A L MH+
Sbjct: 379 NILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHS 438
Query: 122 NRISNIHQV-TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N N+ + T M+ F E +F + + YN L++A+ G
Sbjct: 439 N--GNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNL 496
Query: 181 ERAARVLDEATKRGLFPEL 199
+ A ++ E +GL P +
Sbjct: 497 KDARKLFSELFVQGLLPNV 515
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 36/203 (17%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+KE A+L+ M+ + N +FN +++A + G+ EA + M ++ +P+ T +
Sbjct: 286 WKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSS 345
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ Y + E+++ F + + G P Y +L+ Y K+ R D+A L +EM
Sbjct: 346 LMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEM---- 401
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
IHQ G D N YN L+ L LG A
Sbjct: 402 ---IHQ-------GLTPDNVN----------------------YNTLIHGLCQLGRLREA 429
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+ G P+LF ++ L+
Sbjct: 430 QDLFKNMHSNGNLPDLFTYSMLL 452
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 3/191 (1%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
SG ++ +I + G A + +ME+ C PN T ++ C LV+E
Sbjct: 194 SGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNE 253
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-NRISNIHQVTGQMI 135
+ + F +K+ I P + Y L+ RW +A LL+EM + N + NI T ++
Sbjct: 254 ALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNI--FTFNVL 311
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
E + VF + G + Y++L+ A ++ D +G
Sbjct: 312 VDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGC 371
Query: 196 FPELFRHNKLV 206
P+ F +N L+
Sbjct: 372 KPDAFSYNILI 382
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 90/209 (43%), Gaps = 1/209 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y ++ +M +G++ + + + +I+ F R + A + +M K+ P+ T
Sbjct: 108 GQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVT 167
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ C G ++ E F + ++SG P+V Y ++ K A GL +M
Sbjct: 168 FNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKME 227
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I D+ + ++ +F + + + YN+L++ L
Sbjct: 228 EAGCQPNVVTYNILIDSLCKDKLVNEALD-IFSYMKAKRISPDIFTYNSLIQGLCNFRRW 286
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ A+ +L+E T + P +F N LV ++
Sbjct: 287 KEASALLNEMTSLNIMPNIFTFNVLVDAI 315
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 51/111 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E Q + M +G + +++ +++ F + G +A + + M+ P+
Sbjct: 424 GRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMY 483
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
++ C G + ++++ F E+ G+LP+V Y ++ K D+A
Sbjct: 484 NILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEA 534
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N +I+A + G ++A K + E+ PN + +++ C GL+DE+ E F+ ++
Sbjct: 483 YNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNME 542
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G P Y +++ + + A L+ EM
Sbjct: 543 GDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEM 576
>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 806
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 5/206 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + Q + S M E G+A N ++N +I+ F GR+ +A + +M + +P+ T
Sbjct: 310 GHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTF 369
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++S G + E+++ E+ I P + Y ++ + K NR+DDA + D M +
Sbjct: 370 NALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 429
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + + + DE + E ++ G YN L+ +
Sbjct: 430 PDVVTFNTIIDVYCRAKRVDEGMQLLRE-----ISRRGLVANTTTYNTLIHGFCEVDNLN 484
Query: 182 RAARVLDEATKRGLFPELFRHNKLVW 207
A + E G+ P+ N L++
Sbjct: 485 AAQDLFQEMISHGVCPDTITCNILLY 510
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 36/215 (16%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++++M G+ + ++ ++ + G + A+ +ME+ P+ A++
Sbjct: 244 EAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAII 303
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G +++ F E+ GI P+V Y ++ + RW DA LL +M
Sbjct: 304 DRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM------ 357
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ E N ++ +NAL+ A G A +
Sbjct: 358 -------------IEREINPDVLT-----------------FNALISASVKEGKLFEAEK 387
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
+ DE R +FP+ +N +++ H ++ +
Sbjct: 388 LCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH 422
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 7/206 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K +LS+M E+ + + ++A+I+ + G +A + EM + PN T
Sbjct: 275 GDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTY 334
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G +++ +++ I P V+ + L++ K + +A L DEM
Sbjct: 335 NCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLH 394
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
I MI G F + + +++FD + + +N +++ ++C R
Sbjct: 395 RCIFPDTVTYNSMIYG-FCKHNRFDDAKHMFDLMASP----DVVTFNTIID-VYCRAKRV 448
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ ++L E ++RGL +N L+
Sbjct: 449 DEGMQLLREISRRGLVANTTTYNTLI 474
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 57/130 (43%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + M GV ++ + N ++ F + + EEA++ + ++ + D + ++
Sbjct: 487 QDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHG 546
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C VDE+ + F + G+ P V Y ++++ + + DA L +M N
Sbjct: 547 MCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPD 606
Query: 128 HQVTGQMIKG 137
+ +I+G
Sbjct: 607 NSTYNTLIRG 616
>gi|357463931|ref|XP_003602247.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491295|gb|AES72498.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 704
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 2 GLYKECQAILSRM-----SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
G + E + RM + +A N SFN +++ + G+F+EAI+ + M + RC P
Sbjct: 327 GKFDEAMRLFDRMIKEHNPPAKLAVNLGSFNVMVDGYCAEGKFKEAIEVFRSMGESRCKP 386
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+ + ++ C G++ E++E + E++ G+ P Y +L+ K NR DDA
Sbjct: 387 DTLSFNNLIEQLCNNGMILEAEEVYGEMEGKGVNPDEYTYGLLMDTCFKENRPDDAASYF 446
Query: 117 DEM 119
+M
Sbjct: 447 KKM 449
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +KE + M ES ++ SFN +IE G EA + Y EME +P+E T
Sbjct: 367 GKFKEAIEVFRSMGESRCKPDTLSFNNLIEQLCNNGMILEAEEVYGEMEGKGVNPDEYTY 426
Query: 62 EAVLSVYCFA-GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L CF D++ F+++ SG+ P++ Y L+ K + DDA D M
Sbjct: 427 -GLLMDTCFKENRPDDAASYFKKMVESGLRPNLAVYNRLVDGLVKVGKIDDAKFFFDLM 484
>gi|195655361|gb|ACG47148.1| ATP binding protein [Zea mays]
Length = 551
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 107/234 (45%), Gaps = 19/234 (8%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE +A+ R+ + N+++++ + + + ++A+K EM +++ P T
Sbjct: 231 GMVKEAEAVFGRVKRKLLG-NAETYSTLFFGWCRARDPKKAMKVLEEMIQMKHTPESFTY 289
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGIL---PSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
A + +C AGLV E++E F+ +++ G+ P+ Y +++ AK++R ++ + LL +
Sbjct: 290 VAAIESFCSAGLVSEARELFEFMRTEGLTVSSPTAKTYSIMIVALAKADRMEECFELLSD 349
Query: 119 MHT-----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
M T + + + G + G D V D++ G+ + YN L
Sbjct: 350 MRTCGCMPDVTTYKDLIEGMCLVGRLDAAYR------VLDEMGRAGFPPDIVTYNCFLNV 403
Query: 174 LWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227
L L + A + + + P + +N L+ G A+ A+ +WL
Sbjct: 404 LCSLRNADDALELCERMIEAHCEPSVHTYNMLMMMF----FEMGEAHRALDIWL 453
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 6/139 (4%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+EC +LS M G + ++ +IE GR + A + EM + P+ T
Sbjct: 341 EECFELLSDMRTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGFPPDIVTYNCF 400
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY---AKSNRWDDAYGLLDEMHT 121
L+V C D++ E + + + PSV Y ML+ ++ +++R D + +D+
Sbjct: 401 LNVLCSLRNADDALELCERMIEAHCEPSVHTYNMLMMMFFEMGEAHRALDIWLEMDKRGC 460
Query: 122 NRISNIHQVTGQMIKGEFD 140
R + +++ MI G FD
Sbjct: 461 QRAIDTYEI---MIYGLFD 476
>gi|410110137|gb|AFV61148.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rubella]
Length = 440
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 67/133 (50%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++S M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 100 LFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 159
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY + E+ + F ++ GI PSV+ + LL VY + + +A L M
Sbjct: 160 IMIDVYGQLSMAKEADKLFWGMRKMGIEPSVVSFNTLLRVYGDAELFGEAIHLFRLMQRK 219
Query: 123 RISNIHQVTGQMI 135
I MI
Sbjct: 220 NIEQTVVTYNSMI 232
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 62/118 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + +++ P+
Sbjct: 29 GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 88
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 89 NAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEM 146
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 83/200 (41%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + + ++N++I + + E+A EM+ +PN T
Sbjct: 205 LFGEAIHLFRLMQRKNIEQTVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 264
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG+ + + ++ Y ++ A LL E+
Sbjct: 265 TIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 324
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 325 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 375
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 376 KYSNVVEVFDKMRGLGYFPD 395
>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
Length = 946
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 99/216 (45%), Gaps = 23/216 (10%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M G+ + ++ ++++F + G E+A K + EM +V C PN T A++ Y
Sbjct: 464 LFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL 523
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A V + E F+ + S G LP+++ Y L+ + K+ + + A + + M ++ ++
Sbjct: 524 KAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK--DVPD 581
Query: 130 VTGQMIKGEFDDES-NWQMVEY------------------VFDKLNCEGYGLGMRFYNAL 170
V M ++DD S +V Y + D ++ EG Y+AL
Sbjct: 582 V--DMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDAL 639
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
++ L +G + A V E ++ G L+ ++ L+
Sbjct: 640 IDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 675
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 44/240 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS+M E+ A N + +I+ + G+ +EA K ME+ C PN T A++ +
Sbjct: 690 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFG 749
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ E + + S G+ P+ + Y +L+ K+ D A+ LL+EM
Sbjct: 750 MIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTA 809
Query: 130 VTGQMIKG---EF------------DDESNWQMV-EYVFDKL-NCEGYGLGMRF------ 166
++I+G EF DD + + V + D L + + +R
Sbjct: 810 GYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT 869
Query: 167 -----------YNALLEALWCLGLRERAARVLDEATKRGLFPE----------LFRHNKL 205
YN+L+E+L E A ++ E TK+G+ PE LFR++K+
Sbjct: 870 FSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKI 929
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 14/213 (6%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N ++ A+++ F + R EEA K M C+PN+ +A++ C G +DE++E
Sbjct: 597 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 656
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD- 140
E+ G ++ Y L+ Y K R D A +L +M N + + +MI G
Sbjct: 657 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 716
Query: 141 ---DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
DE+ +++++ + +K G + Y A+++ +G E +L+ +G+ P
Sbjct: 717 GKTDEA-YKLMQMMEEK----GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAP 771
Query: 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
N + + V + + GA L +M
Sbjct: 772 -----NYVTYRVLIDHCCKNGALDVAHNLLEEM 799
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 3/189 (1%)
Query: 12 SRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
S M +GV N + ++ G++E+A EM P+ T VL+ C A
Sbjct: 396 SEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNA 455
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-TNRISNIHQV 130
++ + F+E+K G++ V Y +++ + K+ + A +EM N+ V
Sbjct: 456 SKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNV--V 513
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
T + + +F+ + EG + Y+AL++ G E+A ++ +
Sbjct: 514 TYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 573
Query: 191 TKRGLFPEL 199
P++
Sbjct: 574 CGSKDVPDV 582
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M ++ + ++ +I+ F QGG+ E + EM P+E T ++ VYC AG
Sbjct: 389 MLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGE 448
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ + E+ G+ P+++ Y L+ K D A LLDEM + +
Sbjct: 449 MVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNS 508
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
M+ G N + + ++ G Y +++A LG ++A ++L E R
Sbjct: 509 MVNG-ICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDR 567
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGG 218
GL P + N L+ + M E G
Sbjct: 568 GLQPTVVTFNVLMNGFCMLGMLEDG 592
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 87/198 (43%), Gaps = 3/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + G+ N +N+++ + G E+AIK EME DP+ T V+ YC
Sbjct: 490 LLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYC 549
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +D++ + QE+ G+ P+V+ + +L+ + +D LL M I
Sbjct: 550 RLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVP-DA 608
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL-D 188
+T + + ++ ++ ++ +G YN L++ C + A L
Sbjct: 609 ITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKG-HCKARNLKEAWFLYK 667
Query: 189 EATKRGLFPELFRHNKLV 206
E ++G P + +N L+
Sbjct: 668 EMIEKGYVPTVTSYNALI 685
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE +L +M + S++ VI+ + G ++A+K +M+ PN T
Sbjct: 272 GKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTY 331
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ + C G E+++ +E+ S I+P + Y L+ + K A DEM +
Sbjct: 332 NSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLS 391
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+IS + +I+G F + +F ++ G Y L++ G
Sbjct: 392 KKISPDYITYTTLIQG-FGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMV 450
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + +E + G+ P + + L+
Sbjct: 451 NAFSLHNEMVQMGMTPNIVTYGALI 475
>gi|413952128|gb|AFW84777.1| hypothetical protein ZEAMMB73_772209 [Zea mays]
Length = 519
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 4/189 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +RM+E+GVA + +NA++ A +G +EA ME+ + P+ T +++ C
Sbjct: 297 LFNRMNEAGVAPDRKVYNAIVFALAKGRCVKEAKMLVRSMEEKQVAPDTATFNSLIGPLC 356
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A E+ E F + + PSV + LL V S + + LLD+M R
Sbjct: 357 KARQFQEAMEMFDAMLQRKLSPSVRTFHALLNVARNST---EVFDLLDKMKQLRCEPEMD 413
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I+ +F + VE ++ + G Y L+ L+ G E AAR +E
Sbjct: 414 TYIMLIR-KFCRWREHESVEKLWSAMPANGLSPDRSAYIVLIHGLFLNGRLEEAARYYEE 472
Query: 190 ATKRGLFPE 198
+G PE
Sbjct: 473 MKSKGFLPE 481
>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
Length = 453
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 97/214 (45%), Gaps = 21/214 (9%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+K ++S++ E+G+ +S FN++I AF + G +EA+K + +M++ C P T
Sbjct: 63 LFKSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFN 122
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL------ 116
++ Y AG +E+ + + ++ G+ P+ Y +L+ + ++A+ ++
Sbjct: 123 TLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVAS 182
Query: 117 ----DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
D + N ++ + G+ I+ E E + + LN R + ++
Sbjct: 183 GMQPDAVTYNTLARAYAEKGETIRAE----------EMILEMLN-RRVTPNERTCSIIVN 231
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G A+R + + G+ P LF N L+
Sbjct: 232 GYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLI 265
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 93/209 (44%), Gaps = 3/209 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + +M ESG + +FN +I+ + G+ EEA+K ++ PN+RT
Sbjct: 97 GNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTY 156
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C ++E+ ++ +SG+ P + Y L YA+ A ++ EM
Sbjct: 157 NILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLN 216
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R++ + ++ G + + +VF ++ G + +N+L++ E
Sbjct: 217 RRVTPNERTCSIIVNGYCKEGNMVDASRFVF-RMKELGVLPNLFVFNSLIKGFLDTMDTE 275
Query: 182 RAARVLDEATKRGLFPELFRHNKLV--WS 208
VL + G+ P++ + ++ WS
Sbjct: 276 GVDEVLTLMEENGVRPDVVTFSTIMNAWS 304
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 19/195 (9%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM E GV N FN++I+ F E + ME+ P+ T +++ + AG
Sbjct: 248 RMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAG 307
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNI 127
+D+ KE F ++ + I P + + +L Y ++ + A +L M H N +
Sbjct: 308 RMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICT 367
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCE-GYGLGMRFYNALLEALWCLGLRE---RA 183
++G G+ + V++K+ CE G ++ Y L +W G + +A
Sbjct: 368 TVISGWCSAGKMEHAMK------VYEKM-CEIGVSPNLKTYETL---IWGYGEAKQPLKA 417
Query: 184 ARVLDEATKRGLFPE 198
+L ++G+FP+
Sbjct: 418 EELLQVMEEKGVFPK 432
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ ++IL+ M + GV N VI + G+ E A+K Y +M ++ PN +T
Sbjct: 341 AGEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSPNLKT 400
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILP 91
E ++ Y A +++E Q ++ G+ P
Sbjct: 401 YETLIWGYGEAKQPLKAEELLQVMEEKGVFP 431
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 57/120 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +C+ I + M ++ + + +F+ + + + + G E+A M K PN
Sbjct: 306 AGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVI 365
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+S +C AG ++ + + ++++ G+ P++ Y L+ Y ++ + A LL M
Sbjct: 366 CTTVISGWCSAGKMEHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVME 425
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/110 (18%), Positives = 56/110 (50%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M E+GV + +F+ ++ A+ GR ++ + + +M K +P+ + Y
Sbjct: 280 VLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYV 339
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
AG ++++ ++ G+ P+V+ +++ + + + + A + ++M
Sbjct: 340 RAGEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKM 389
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 94/214 (43%), Gaps = 5/214 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M E GVA N ++N +I Q R EA + M++ PN + ++ YC
Sbjct: 278 LFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYC 337
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +D++ F ++KSSG PS+ Y +L+A ++++ ++ EM +S +
Sbjct: 338 SIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSP-SK 396
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT ++ N + ++ + G + Y L+ L +G + A+++
Sbjct: 397 VTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKS 456
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAI 223
+ L P +N +++ EG +Y A+
Sbjct: 457 LDEMHLKPNDVIYNTMIYGY----CKEGSSYRAL 486
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 93/197 (47%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M E G++ N + +I+ + G E + + +M ++ N+ T +++ +
Sbjct: 173 VLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFF 232
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL + E ++++K +GI+P+V Y ++ + ++A+ L DEM ++ +
Sbjct: 233 KMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVA-CNV 291
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT + G E E + ++ +G + YN L++ +G ++A+ + ++
Sbjct: 292 VTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQ 351
Query: 190 ATKRGLFPELFRHNKLV 206
G P L +N L+
Sbjct: 352 MKSSGQSPSLATYNILI 368
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I S M ++G+ + + +I G +EA K + ++++ PN+ ++ YC
Sbjct: 418 IYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYC 477
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G + +E+ +G++P+V Y + + K +W +A LL +M
Sbjct: 478 KEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDM 527
>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Cucumis sativus]
Length = 529
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 85/198 (42%), Gaps = 1/198 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Q + M E G + ++N+++EA +GG+ +EA K ++EM+ DP+ T
Sbjct: 234 GDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTY 293
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ C + + K +LP+V Y ++ K ++AY +LDEM
Sbjct: 294 SIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEM-I 352
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R + I+ D S + +++ + YN +L+ L +G +
Sbjct: 353 ERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFD 412
Query: 182 RAARVLDEATKRGLFPEL 199
RA V + KRG +P +
Sbjct: 413 RANEVWESMGKRGFYPSV 430
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 87/195 (44%), Gaps = 2/195 (1%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
+RM E G+ D + ++ + A + + +++ V +P+ +T + +
Sbjct: 174 FNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSV-FNPSVKTYSILTRGWGV 232
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G + +++ F E++ G L V+ Y LL K + D+AY + EM +N +
Sbjct: 233 VGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADT 292
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
I+ E++ V V ++ + + YN +++ L E A ++LDE
Sbjct: 293 YSIFIRSSC-QENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEM 351
Query: 191 TKRGLFPELFRHNKL 205
+RG+ P+ + +N +
Sbjct: 352 IERGVTPDTWSYNAI 366
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E IL M E GV ++ S+NA+ A+ M++ +C P++ T V
Sbjct: 342 EEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMV 401
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRW 109
L + G D + E ++ + G PSV Y +++ + K +W
Sbjct: 402 LKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHGFCK-KKW 445
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 1/186 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RMSE+GV + ++ A+I+ + GR E+A + +M PN ++ +C G
Sbjct: 176 RMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKG 235
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+ E +E++ G+ P + Y ++ ++ A G++ EM + +
Sbjct: 236 DAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYT 295
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+I G + E M + + EG GL Y AL+ L G A RVL E +
Sbjct: 296 TLIDG-YCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMME 354
Query: 193 RGLFPE 198
GL P+
Sbjct: 355 AGLEPD 360
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 99/239 (41%), Gaps = 34/239 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + + +M G+ N+ F +I+A + G E ++ + EM + P+ T
Sbjct: 200 GRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTY 259
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL------ 115
A+++ C A + + E++S+G+ P + Y L+ Y K D A +
Sbjct: 260 NAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVA 319
Query: 116 ----LDEM----------HTNRISNIHQVTGQMIKGEFD-DESNWQMVEYVF-------- 152
LDE+ R ++ +V G+M++ + D + + MV F
Sbjct: 320 EGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKT 379
Query: 153 -----DKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
++ +G G+ YN ++ LG + A +L+ G+ P+ +N L+
Sbjct: 380 GLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILL 438
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 51/110 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +L M E+G+ ++ ++ VI+AF + G + ++ EM+ P T
Sbjct: 340 GRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTY 399
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111
+++ +C G + + + + G+ P + Y +LL + K + D
Sbjct: 400 NVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTD 449
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 77/191 (40%), Gaps = 1/191 (0%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
++G+ + FN ++ + G A + EM+ + ++S C AG +D
Sbjct: 109 DAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLD 168
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
++ + + +G+ P V Y L+ + R +DA G+ ++M + V +I
Sbjct: 169 GAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILI 228
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
M+E + ++ G YNA++ L + A+ ++ E GL
Sbjct: 229 DAHCKKGDAETMLE-LHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGL 287
Query: 196 FPELFRHNKLV 206
P+ + L+
Sbjct: 288 RPDTVTYTTLI 298
>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Cucumis sativus]
Length = 529
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 85/198 (42%), Gaps = 1/198 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Q + M E G + ++N+++EA +GG+ +EA K ++EM+ DP+ T
Sbjct: 234 GDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTY 293
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ C + + K +LP+V Y ++ K ++AY +LDEM
Sbjct: 294 SIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEM-I 352
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R + I+ D S + +++ + YN +L+ L +G +
Sbjct: 353 ERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFD 412
Query: 182 RAARVLDEATKRGLFPEL 199
RA V + KRG +P +
Sbjct: 413 RANEVWESMGKRGFYPSV 430
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 87/195 (44%), Gaps = 2/195 (1%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
+RM E G+ D + ++ + A + + +++ V +P+ +T + +
Sbjct: 174 FNRMGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSV-FNPSVKTYSILTRGWGV 232
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G + +++ F E++ G L V+ Y LL K + D+AY + EM +N +
Sbjct: 233 VGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADT 292
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
I+ E++ V V ++ + + YN +++ L E A ++LDE
Sbjct: 293 YSIFIRSSC-QENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEM 351
Query: 191 TKRGLFPELFRHNKL 205
+RG+ P+ + +N +
Sbjct: 352 IERGVTPDTWSYNAI 366
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E IL M E GV ++ S+NA+ A+ M++ +C P++ T V
Sbjct: 342 EEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMV 401
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRW 109
L + G D + E ++ + G PSV Y +++ + K +W
Sbjct: 402 LKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHGFCK-KKW 445
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 7/205 (3%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
A++ M + GV + +++ +++AF + R +EA++ M C PN T +++
Sbjct: 278 HAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDG 337
Query: 68 YCFAGLVDESKEQFQ---EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
C + D S E FQ ++ + ++P + + +L+A K+ ++ A L +EM +
Sbjct: 338 LCKS---DRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNM 394
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
G +I G + + D + G + YN L+ L G E
Sbjct: 395 QPDVMTFGALIDG-LCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPC 453
Query: 185 RVLDEATKRGLFPELFRHNKLVWSV 209
L+E G PE + LV+++
Sbjct: 454 EFLEEMVSSGCVPESMTYGSLVYAL 478
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 1/176 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+FN +I + G FE+A + EM P+ T A++ C AG V+ +++ +
Sbjct: 365 TFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLM 424
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ G+ P+V+ Y +L+ KS R ++ L+EM ++ G ++
Sbjct: 425 GNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRT 484
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
++ V KL G+ YN L++ LW G E+A VL+E +G P+ F
Sbjct: 485 DDALQLV-SKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSF 539
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 1/193 (0%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G N ++NA++ + + E A M P+ T ++ +C A
Sbjct: 249 MIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR 308
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
VDE+ E + S G P+V+ + ++ KS+R +A+ + +++ NR+ +VT
Sbjct: 309 VDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVY-NRMLVPDKVTFN 367
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
++ N++ +F+++ + + + AL++ L G E A +LD
Sbjct: 368 ILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 427
Query: 194 GLFPELFRHNKLV 206
G+ P + +N LV
Sbjct: 428 GVPPNVVTYNVLV 440
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + IL M GV N ++N ++ + GR EE + EM C P T
Sbjct: 411 AGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMT 470
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ C A D++ + ++KS G P + Y +L+ KS + + A +L+EM
Sbjct: 471 YGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEM 529
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 36/229 (15%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M+ GVA ++N +I + ++ + E+ K P+ T ++ C AG
Sbjct: 72 MARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGD 131
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---HTNRISNI--- 127
++E++ + S G +P+V+ Y +L+ K R D+A L+ EM + + NI
Sbjct: 132 LEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITY 191
Query: 128 HQVTGQMIKGEFDDES------------------------------NWQMVEYVFDKLNC 157
+ + K E+ Q E D +
Sbjct: 192 NSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIA 251
Query: 158 EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
GY + YNAL+ L ERA +++ +G+ P++ ++ LV
Sbjct: 252 GGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLV 300
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 86/214 (40%), Gaps = 15/214 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD--PNE 58
G +E + + MS G N +++ +I + GR +EA + EM + CD PN
Sbjct: 129 AGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNI 188
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSG--ILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
T + L C + E+ E + ++ + P + + L+ K + D+A
Sbjct: 189 ITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN-- 246
Query: 117 DEM----HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
D+M + + + + + K + E M+E + DK G + Y+ L++
Sbjct: 247 DDMIAGGYVPNVVTYNALVNGLCKAD-KMERAHAMIESMVDK----GVTPDVITYSVLVD 301
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
A + A +L RG P + N ++
Sbjct: 302 AFCKASRVDEALELLHGMASRGCTPNVVTFNSII 335
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 4/184 (2%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE 83
+FN +++A + GR EEA + + M +C PN T V++ C G +D + E
Sbjct: 102 TFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDL 161
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143
+ +G P+V+ Y +L+ K+ R D + LL EM + ++ G
Sbjct: 162 MNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRR 221
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEATKRGLFPELFRH 202
+ +E V + Y + YN+L+E L+C + +RA R++ ++RG P++ +
Sbjct: 222 LDEALELVQLMIRSGCYPT-VVTYNSLME-LFCRSKQVDRAFRLIQVMSERGCPPDVINY 279
Query: 203 NKLV 206
N ++
Sbjct: 280 NTVI 283
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 105/257 (40%), Gaps = 54/257 (21%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
N + + G+ +A++ + E RC PNE T +++ C AG +D++ E E++
Sbjct: 1 MNCALNLLVRAGQHGQAVQLFREE---RCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57
Query: 86 SSGILPSV-----------------------------------MCYCMLLAVYAKSNRWD 110
GI P V + + +L+ KS R +
Sbjct: 58 DRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVE 117
Query: 111 DAYGLLDEMHTNR--ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYN 168
+A+ + + MHT+ + N+ T +I G D + +E + D +N G + Y+
Sbjct: 118 EAFQIFESMHTSSQCLPNVVTYT-TVINGLCKDGKLDRAIE-LLDLMNETGCCPNVITYS 175
Query: 169 ALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHR-----------MWEG 217
L+E L G ++ +L E T+RG P++ +N L+ + R M
Sbjct: 176 VLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRS 235
Query: 218 GAYTAISVWLNKMYEMF 234
G Y + + N + E+F
Sbjct: 236 GCYPTVVTY-NSLMELF 251
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 18/210 (8%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGR------FEEAIKAYVEMEKVRCDPNERTL 61
QA+L +M + + +++ +I+ + R E A + M++ C PN T
Sbjct: 296 QALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTY 355
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD---- 117
V+ C A ++ + + S ++P + + M++ KS+ D AY +
Sbjct: 356 AVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSE 415
Query: 118 -EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
E N ++ + G GE D VF+ L E + G+ YN++L+ L
Sbjct: 416 RECKPNPVAYAALIDGLSKGGEVDKAVR------VFE-LMVESFRPGVATYNSVLDGLCG 468
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G E A R+++ + FP+ + L+
Sbjct: 469 VGRIEEAVRMVEGMIHKECFPDGASYGALI 498
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M+E+G N +++ ++E + GR ++ EM + P+ +L+ C
Sbjct: 158 LLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLC 217
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ +DE+ E Q + SG P+V+ Y L+ ++ +S + D A+ L+ M
Sbjct: 218 KSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVM 267
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L M+ G + +N ++ + R +EA++ M + C P T +++ ++
Sbjct: 192 TLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELF 251
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C + VD + Q + G P V+ Y ++A + R DDA LL +M R
Sbjct: 252 CRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDV 311
Query: 129 QVTGQMIKGEFDD---ESNWQM 147
+I G D +++W++
Sbjct: 312 ITYSTIIDGLCKDWRVDADWKL 333
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q S + S N ++ VI + G+ + AI+ M + C PN T ++
Sbjct: 121 QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEG 180
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C AG D+ QE+ G P V+ Y LL KS R D+A L+ M
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N+V++ GR EEA++ M C P+ + A++ C V+E+ E FQ +
Sbjct: 458 TYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAV 517
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ G V Y +L+ K R DA+G+ +++
Sbjct: 518 EAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKL 552
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 2/166 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L RM +S V + SF+ VI + + + A K + M + C PN A++
Sbjct: 373 ALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL 432
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G VD++ F E+ P V Y +L R ++A +++ M
Sbjct: 433 SKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDG 491
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
G +I+G + E +F + +G+ + + YN L+ L
Sbjct: 492 ASYGALIRGLCRVSCVEEAYE-LFQAVEAKGFAMEVGVYNVLVNEL 536
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 84/190 (44%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I+ RM GV+ + ++N+++ + G++E+ + + M + C PN T + +C
Sbjct: 482 IVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFC 541
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
A V+E+ +E+++ G+ P V+ + L+ + + D AY L + +
Sbjct: 542 KARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTI 601
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
T ++ F + N M E +F+K+ G+ Y +++ G L
Sbjct: 602 ATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLV 661
Query: 190 ATKRGLFPEL 199
++GL P L
Sbjct: 662 KIEKGLIPSL 671
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + E G+ N N +++ Q G +A+K EM + C P+ T V++ C
Sbjct: 377 VFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLC 436
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G V ++ + + G LP V + L+ Y K + D+A ++D M + +S
Sbjct: 437 KIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSP-DV 495
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+T I ++ V F + +G + YN L E+ E A +++E
Sbjct: 496 ITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEE 555
Query: 190 ATKRGLFPELFRHNKLV 206
+GL P++ L+
Sbjct: 556 MQNKGLTPDVVNFGTLM 572
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 83/208 (39%), Gaps = 2/208 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + RM + S+NA++ + F++A K Y+ M P+ T
Sbjct: 90 GKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTF 149
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+ +C ++ + S G S + YC ++ + + N +A+ L +EM
Sbjct: 150 TIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLG 209
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I ++I + + Q E + +K+ G + N ++ +
Sbjct: 210 LGICPDIMAFNKLIH-TLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLN 268
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
A R+LD RGL P++ +N L+ +
Sbjct: 269 EAIRLLD-GVGRGLTPDVITYNTLICGL 295
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 86/184 (46%), Gaps = 4/184 (2%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+FN +I+ + + + + AI+ M P+ T ++L+ C AG ++ F+ +
Sbjct: 462 TFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLM 521
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
G +P+++ Y +L + K+ + ++A L++EM ++ G ++KG F D +
Sbjct: 522 MEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKG-FCDNGD 580
Query: 145 WQMVEYVFDKLNCEGYGLG--MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202
+F +++ E Y + YN ++ A A ++ ++ + G P+ + +
Sbjct: 581 LDGAYQLFKRVD-EQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTY 639
Query: 203 NKLV 206
++
Sbjct: 640 RVMI 643
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/270 (17%), Positives = 102/270 (37%), Gaps = 46/270 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-----------VEME 50
G +E + +L+++ + GV+ N + N I+ F Q EAI+ +
Sbjct: 230 GHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRGLTPDVITYN 289
Query: 51 KVRC-----------------------DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87
+ C +P+ T +++ YC G++ + + ++
Sbjct: 290 TLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFK 349
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
G +P YC L+ + D A + +E + + ++KG Q
Sbjct: 350 GFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQA 409
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV- 206
++ + ++++ G + YN ++ L +G A ++ +A +G P++F N L+
Sbjct: 410 LK-LMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLID 468
Query: 207 -----WSVD-----VHRMWEGGAYTAISVW 226
+D V RMW G + +
Sbjct: 469 GYCKKLKLDNAIEIVDRMWNHGVSPDVITY 498
>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
Length = 683
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 10/218 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + Q +L M E ++ N ++NA+I AF + G+F EA + Y EM PN T
Sbjct: 302 GRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITY 361
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
+++ +C +D +++ F + + G P V + L+ Y + R DD LL EM
Sbjct: 362 NSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPR 421
Query: 121 ----TNRISNIHQVTGQMIKGEFDD--ESNWQMVE--YVFDKLNCEGYGLGMRFYNALLE 172
N ++ + G + G+ + + + QM+ D + C G+ L +
Sbjct: 422 RGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKD 481
Query: 173 ALWCLGLRERAARVLDEATK-RGLFPELFRHNKLVWSV 209
AL +++ LD + G+ P++ +N L+ +
Sbjct: 482 ALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGL 519
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 2/206 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERT 60
G E A+L RM E+G+ + ++ ++ + G A+ +ME++ PN
Sbjct: 196 GRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVI 255
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ C G +S F E++ GI P+++ Y ++ + S RW A LL EM
Sbjct: 256 YSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEML 315
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+IS + VT + F E + ++D++ G YN++++
Sbjct: 316 ERKISP-NVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRL 374
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A + +G P++F L+
Sbjct: 375 DAAEDMFYLMATKGCSPDVFTFTTLI 400
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 4/199 (2%)
Query: 10 ILSRMSE-SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L +M E S + N ++A+I+ + GR ++ ++EM+ PN T ++ +
Sbjct: 239 LLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGF 298
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +G ++ QE+ I P+V+ Y L+ + K ++ +A L DEM I
Sbjct: 299 CISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNT 358
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVL 187
MI G F + E +F + +G + + L++ +C R + +L
Sbjct: 359 ITYNSMIDG-FCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDG-YCGAKRIDDGMELL 416
Query: 188 DEATKRGLFPELFRHNKLV 206
E +RGL +N L+
Sbjct: 417 HEMPRRGLVANTVTYNTLI 435
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + + M G+ ++ +++++I+ + R +EA + +V M PN T
Sbjct: 523 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTF 582
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+++ YC AG VD+ E F E+ GI+ + Y L+ + K + A + EM
Sbjct: 583 NTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEM 640
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 85/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + M + G+ N ++N +I F GR+ A + EM + + PN T
Sbjct: 267 GRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTY 326
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ + G E+ E + E+ GI+P+ + Y ++ + K +R D A + M T
Sbjct: 327 NALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMAT 386
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
S +I G + +E + ++ G YN L+ +G
Sbjct: 387 KGCSPDVFTFTTLIDGYCGAKRIDDGME-LLHEMPRRGLVANTVTYNTLIHGFCLVGDLN 445
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + + G+ P++ N L+
Sbjct: 446 AALDLSQQMISSGVCPDIVTCNTLL 470
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+GV + ++N +I G+F EA + Y EM P+ T +++ C +DE
Sbjct: 503 NGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 562
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ + F + S P+V+ + L+ Y K+ R DD L EM
Sbjct: 563 ATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEM 605
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/194 (18%), Positives = 72/194 (37%), Gaps = 4/194 (2%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SF +I+ F + A+ + ++ K+ P+ T +L C V E+ + F +I
Sbjct: 118 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI 177
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
P V+ + L+ + R +A LLD M N + G + G
Sbjct: 178 CR----PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDT 233
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + Y+A+++ L G + + E +G+FP + +N
Sbjct: 234 VSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNC 293
Query: 205 LVWSVDVHRMWEGG 218
++ + W
Sbjct: 294 MIGGFCISGRWSAA 307
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-----PNERTLEAVLSV 67
+M SGV + + N +++ G+ ++A++ + M+K + D P VL+
Sbjct: 453 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTY 512
Query: 68 -YCFAGLVDESK-----EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
GL++E K E ++E+ GI+P + Y ++ K +R D+A + M +
Sbjct: 513 NILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS 572
Query: 122 NRISNIHQVTGQMIKG 137
S +I G
Sbjct: 573 KSFSPNVVTFNTLING 588
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 9/215 (4%)
Query: 21 RNSDSFNAVIEAFRQGGRFEEA---IKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
R++ S+N V+ A + G + A ++A C PN + ++ C L D++
Sbjct: 75 RDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQA 134
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ ++S+G+ V+ Y L+ + D A L+ EM + I V +++G
Sbjct: 135 VGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQG 194
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ W+ V VF +++ +G + Y L+++L +G ++A V+D +RGL P
Sbjct: 195 -YCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEP 253
Query: 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ +N L+ + EG AI V L KM E
Sbjct: 254 NVVTYNVLINCM----CKEGSVKEAIGV-LKKMSE 283
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 99/243 (40%), Gaps = 42/243 (17%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M ESG+ N ++++++ + + GR+E+ K +VEM + +P+ ++ C
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ + G+ P+V+ Y +L+ K +A G+L +M ++
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVV 291
Query: 130 VTGQMIKGEFD----DESNWQMVEYVFDK------------------------------- 154
+IKG D DE+ W + E V K
Sbjct: 292 TYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRA 351
Query: 155 -LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV------W 207
+ G + + YN L+ L + +A ++DE T GL P+ F ++ L+ W
Sbjct: 352 MMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMW 411
Query: 208 SVD 210
VD
Sbjct: 412 QVD 414
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 7/221 (3%)
Query: 2 GLYKECQAILSRMS---ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE 58
G + A+L MS N+ S+ ++ A ++A+ M +
Sbjct: 91 GHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADV 150
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T ++ C A VD++ E E+ SGI P+V+ Y LL Y KS RW+D + E
Sbjct: 151 VTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVE 210
Query: 119 MHTNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
M I ++ TG + + V D + G + YN L+ +
Sbjct: 211 MSEKGIEPDVVMYTG--LIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKE 268
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSV-DVHRMWEG 217
G + A VL + +++G+ P++ +N L+ + DV M E
Sbjct: 269 GSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEA 309
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 96/218 (44%), Gaps = 4/218 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L + +L M +GV + ++ +I ++A++ EM + +PN
Sbjct: 130 LADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYS 189
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++L YC +G ++ + F E+ GI P V+ Y L+ K + A+G++D M
Sbjct: 190 SLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMD-MMVR 248
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
R + VT ++ E + + V K++ +G + YN L++ L + +
Sbjct: 249 RGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDE 308
Query: 183 AARVLDEAT--KRGLFPELFRHNKLVWSV-DVHRMWEG 217
A +L+E K + P + N ++ + D+ RM +
Sbjct: 309 AMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQA 346
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV----- 64
+LS M + G+ + ++ A + G E A + EM+ N L+ V
Sbjct: 419 LLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMD------NNFPLDVVAYSTM 472
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ C AG + +KE + I G+ P + Y +++ ++AKS + A G+L +M
Sbjct: 473 IHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQM 527
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 43/226 (19%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC------------------------ 54
V N +FN+VI+ GR +A + ME+ C
Sbjct: 323 VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAM 382
Query: 55 -----------DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103
+P+ T ++ +C VD +++ ++ GI P + Y LL
Sbjct: 383 ELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAM 442
Query: 104 AKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF---DDESNWQMVEYVFDKLNCEGY 160
+ + A L +EM N ++ + MI G D ++ ++++ + D EG
Sbjct: 443 CEQGMMERARNLFNEMDNNFPLDVVAYS-TMIHGACKAGDLKTAKELLKSIVD----EGL 497
Query: 161 GLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
Y+ ++ G E A VL + T G P++ + L+
Sbjct: 498 TPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLI 543
>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
Length = 603
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 1/197 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +++ MS G + N ++NA++ + GR +EA K + + P++ T
Sbjct: 394 AGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFT 453
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S +C + ++ F ++ GI P + Y L+AV+ + NR ++ +E
Sbjct: 454 YNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAV 513
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I ++ MI G + E N + F +L+ G Y A++ L R
Sbjct: 514 RIGIIPTNKTYTSMICG-YCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKR 572
Query: 181 ERAARVLDEATKRGLFP 197
+ A + D ++GL P
Sbjct: 573 DEARSLYDSMIEKGLVP 589
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 5/190 (2%)
Query: 21 RNSDS----FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
RNS+ ++E+F + GR +EA++ +EM PN RTL ++ V GLV+
Sbjct: 129 RNSEKACEVMRCMVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEY 188
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136
++ F+E+ G+ P + Y +++ +Y K +A L M R + T +I
Sbjct: 189 AELLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVM-LERGFVVDNATFTLII 247
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
F + + F +L G + + ++E L G ++A +L+E +G
Sbjct: 248 SRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWK 307
Query: 197 PELFRHNKLV 206
P ++ H L+
Sbjct: 308 PNVYTHTSLI 317
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 91/195 (46%), Gaps = 2/195 (1%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
R+ + G+ N +F +IE + G ++A + EM PN T +++ C G
Sbjct: 265 RLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKG 324
Query: 73 LVDESKEQFQE-IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131
+++ F + ++S P+V+ Y +++ Y + ++ + A LL M +
Sbjct: 325 WTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTY 384
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+I G N++ + + ++ EG+ + YNA++ L G + A ++L++
Sbjct: 385 TTLIDGHCK-AGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGF 443
Query: 192 KRGLFPELFRHNKLV 206
+ GL P+ F +N L+
Sbjct: 444 QNGLKPDKFTYNILM 458
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + + M + G N S+ VI + G A+ + +ME+ C PN T
Sbjct: 177 GKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTY 236
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C LV+++ E E+ GI P+V Y ++ + + ++A L EM
Sbjct: 237 STIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEM-V 295
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG-LR 180
R + VT ++ E VF+ + +G + YNAL++ +CL L
Sbjct: 296 GRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDG-YCLQRLM 354
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A +V + ++G P +N L+
Sbjct: 355 NEAKKVFEIMIRKGCAPGAHSYNILI 380
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 94/207 (45%), Gaps = 1/207 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L +M + G+ ++ +FNA+I G+ +EA++ + EM K +PN + V++
Sbjct: 149 SVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGL 208
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G + + F++++ +G P+V+ Y ++ K +DA L EM I
Sbjct: 209 CKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNV 268
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G F + +F ++ + L++ L G+ A V +
Sbjct: 269 FTYNSIVHG-FCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFE 327
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMW 215
T++G+ P++ +N L+ + R+
Sbjct: 328 TMTEKGVEPDISTYNALMDGYCLQRLM 354
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M V N+ +F +++ + G EA + M + +P+ T
Sbjct: 282 GQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTY 341
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ YC L++E+K+ F+ + G P Y +L+ Y KS R D+A LL EM+
Sbjct: 342 NALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMY- 400
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ N VT + + +F ++ G + Y LL+ G +
Sbjct: 401 HKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLD 460
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++L ++ L P + + L+
Sbjct: 461 EALKLLKSMKEKKLEPNIVHYTILI 485
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 9/201 (4%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L + LS M E G+ N ++N+++ F G+ EA + + EM PN T
Sbjct: 248 LVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFT 307
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ C G+V E++ F+ + G+ P + Y L+ Y ++A + + M
Sbjct: 308 ILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRK 367
Query: 123 RISNIHQVTGQMIKGEFD----DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ +I G DE+ + E LN + Y+ L++ L LG
Sbjct: 368 GCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVT-----YSTLMQGLCQLG 422
Query: 179 LRERAARVLDEATKRGLFPEL 199
+ A + E G P L
Sbjct: 423 RPKEALNLFKEMCSYGPHPNL 443
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 75/171 (43%), Gaps = 1/171 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + M G N ++ +++ F + G +EA+K M++ + +PN
Sbjct: 422 GRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHY 481
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ AG ++ +KE F ++ G P + Y +++ K D+AY L +M
Sbjct: 482 TILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMED 541
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
+ MI+G ++ + + + D++ + + + + + LL+
Sbjct: 542 DGFLPNSCSYNVMIQGFLQNQDSSTAIRLI-DEMVGKRFSVNLSTFQMLLD 591
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/229 (19%), Positives = 89/229 (38%), Gaps = 6/229 (2%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y ++ ++M V N S N +I + + ++ +M K+ P+ T A
Sbjct: 109 YSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNA 168
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+++ C G + E+ E F E+ G P+V+ Y ++ K+ A + +M N
Sbjct: 169 LINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNG 228
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+I D +E++ + + G + YN+++ LG A
Sbjct: 229 CKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVE-RGIPPNVFTYNSIVHGFCNLGQLNEA 287
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
R+ E R + P N + +++ V + + G + + M E
Sbjct: 288 TRLFKEMVGRDVMP-----NTVTFTILVDGLCKEGMVSEARLVFETMTE 331
>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
Length = 660
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E ++ +M A + +FN +I + + G E A K + EME + +PN TL
Sbjct: 242 GRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITL 301
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
++ C + + E F+ ++ G+ + + Y + + + N + A LDEM
Sbjct: 302 NTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSK 361
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ + + G G DD S+ V KL G+ L YN L+
Sbjct: 362 DGCFPDAVVYYTLICGLAQAGRLDDASS------VVSKLKEAGFCLDRVCYNVLISEFCK 415
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
+RA L+E G+ P+ +N L+
Sbjct: 416 KNKLDRAQEWLNEMELAGVKPDSVTYNTLI 445
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 93/212 (43%), Gaps = 6/212 (2%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78
VA ++ +N +I+ + GR EEA+ +M +C P T +++ YC +G ++ +
Sbjct: 224 VAPDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAH 283
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE 138
+ F E++++ I P+V+ L+ K NR A M + + VT +
Sbjct: 284 KLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKG-NNVTYTVFINA 342
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
F + +N D+++ +G Y L+ L G + A+ V+ + + G
Sbjct: 343 FCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAG---- 398
Query: 199 LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
F +++ ++V + + WLN+M
Sbjct: 399 -FCLDRVCYNVLISEFCKKNKLDRAQEWLNEM 429
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/201 (18%), Positives = 88/201 (43%), Gaps = 4/201 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + +++S++ E+G + +N +I F + + + A + EME P+ T
Sbjct: 381 AGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVT 440
Query: 61 LEAVLSVYCFAGLVDESKEQFQEI-KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++S + G + + +++ + G+ P+V Y L+ Y +N D+A + EM
Sbjct: 441 YNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEM 500
Query: 120 HTNRISNI--HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ N S + + V ++ ++ + D + G YN++ +AL
Sbjct: 501 N-NVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDK 559
Query: 178 GLRERAARVLDEATKRGLFPE 198
++A +++D ++ P+
Sbjct: 560 NWLDKAFKLMDRMVEQACNPD 580
>gi|410110105|gb|AFV61132.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
aristata]
Length = 382
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++ M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 55 LFREARSLIGEMKAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 114
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 115 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 174
Query: 123 RI 124
I
Sbjct: 175 NI 176
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 124 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 183
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 184 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 243
Query: 122 NRISNIHQVTGQ 133
+ I I Q+ Q
Sbjct: 244 SGIE-IDQILFQ 254
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 52/94 (55%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++ +IE R+ + +AI + +++ P+ A+++V+ A L E++ E+K
Sbjct: 8 YSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMK 67
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 68 AAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEM 101
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 160 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 219
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSGI + + ++ Y ++ A LL E+
Sbjct: 220 TIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 279
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 280 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 330
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 331 KYSNVVEVFDKMRGLGYFPD 350
>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
mitochondrial-like [Glycine max]
Length = 490
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 3/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I + G+ +N++S N +++ + ++A + ++E+ K PN T + +C
Sbjct: 165 IFDDLQALGLEKNTESMNLLLDTLCKEKFVQQAREIFLEL-KQHIAPNAHTFNIFIHGWC 223
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
VDE+ QE+K G P V+ Y L+ Y + + Y LLDEM S +
Sbjct: 224 KICRVDEAHWTIQEMKGYGFHPCVISYSTLIQCYCQEGNFSRVYELLDEMQAQGCS-ANV 282
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD- 188
+T I ++ V +++ G F+N+L+ L G + AA V
Sbjct: 283 ITYTSIMCALGKAKKFEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKV 342
Query: 189 EATKRGLFPELFRHNKLV 206
E K G+ P +N ++
Sbjct: 343 EMPKAGVSPNTSTYNSMI 360
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-VEMEKVRCDPNERTLE 62
++E + RM SG ++ FN++I + GR ++A + VEM K PN T
Sbjct: 298 FEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYN 357
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++S++C+ + E +E+++S G P Y L+ +S + D G+L E+
Sbjct: 358 SMISMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSGKID---GVLSEILN 414
Query: 122 NRISNIH 128
+ I+ H
Sbjct: 415 DMINKQH 421
>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 686
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 10/218 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + Q +L M E ++ N ++NA+I AF + G+F EA + Y EM PN T
Sbjct: 302 GRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITY 361
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH- 120
+++ +C +D +++ F + + G P V + L+ Y + R DD LL EM
Sbjct: 362 NSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPR 421
Query: 121 ----TNRISNIHQVTGQMIKGEFDD--ESNWQMVE--YVFDKLNCEGYGLGMRFYNALLE 172
N ++ + G + G+ + + + QM+ D + C G+ L +
Sbjct: 422 RGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKD 481
Query: 173 ALWCLGLRERAARVLDEATK-RGLFPELFRHNKLVWSV 209
AL +++ LD + G+ P++ +N L+ +
Sbjct: 482 ALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGL 519
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 2/206 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERT 60
G E A+L RM E+G+ + ++ ++ + G A+ +ME++ PN
Sbjct: 196 GRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVI 255
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ C G +S F E++ GI P+++ Y ++ + S RW A LL EM
Sbjct: 256 YSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEML 315
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+IS + VT + F E + ++D++ G YN++++
Sbjct: 316 ERKISP-NVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRL 374
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ A + +G P++F L+
Sbjct: 375 DAAEDMFYLMATKGCSPDVFTFTTLI 400
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 4/199 (2%)
Query: 10 ILSRMSE-SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+L +M E S + N ++A+I+ + GR ++ ++EM+ PN T ++ +
Sbjct: 239 LLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGF 298
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +G ++ QE+ I P+V+ Y L+ + K ++ +A L DEM I
Sbjct: 299 CISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNT 358
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVL 187
MI G F + E +F + +G + + L++ +C R + +L
Sbjct: 359 ITYNSMIDG-FCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDG-YCGAKRIDDGMELL 416
Query: 188 DEATKRGLFPELFRHNKLV 206
E +RGL +N L+
Sbjct: 417 HEMPRRGLVANTVTYNTLI 435
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + E + + M G+ ++ +++++I+ + R +EA + +V M PN T
Sbjct: 523 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTF 582
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC AG VD+ E F E+ GI+ + Y L+ + K + A + EM +
Sbjct: 583 NTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMIS 642
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL 162
+ + M+ G + E + V + D GY L
Sbjct: 643 SGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQMSVGYQL 683
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 85/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + + M + G+ N ++N +I F GR+ A + EM + + PN T
Sbjct: 267 GRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTY 326
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+++ + G E+ E + E+ GI+P+ + Y ++ + K +R D A + M T
Sbjct: 327 NALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMAT 386
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
S +I G + +E + ++ G YN L+ +G
Sbjct: 387 KGCSPDVFTFTTLIDGYCGAKRIDDGME-LLHEMPRRGLVANTVTYNTLIHGFCLVGDLN 445
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + + G+ P++ N L+
Sbjct: 446 AALDLSQQMISSGVCPDIVTCNTLL 470
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+GV + ++N +I G+F EA + Y EM P+ T +++ C +DE
Sbjct: 503 NGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 562
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ + F + S P+V+ + L+ Y K+ R DD L EM
Sbjct: 563 ATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEM 605
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/194 (18%), Positives = 72/194 (37%), Gaps = 4/194 (2%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
SF +I+ F + A+ + ++ K+ P+ T +L C V E+ + F +I
Sbjct: 118 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI 177
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
P V+ + L+ + R +A LLD M N + G + G
Sbjct: 178 CR----PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDT 233
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + Y+A+++ L G + + E +G+FP + +N
Sbjct: 234 VSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNC 293
Query: 205 LVWSVDVHRMWEGG 218
++ + W
Sbjct: 294 MIGGFCISGRWSAA 307
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-----PNERTLEAVLSV 67
+M SGV + + N +++ G+ ++A++ + M+K + D P VL+
Sbjct: 453 QMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTY 512
Query: 68 -YCFAGLVDESK-----EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
GL++E K E ++E+ GI+P + Y ++ K +R D+A + M +
Sbjct: 513 NILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS 572
Query: 122 NRIS 125
S
Sbjct: 573 KSFS 576
>gi|410110099|gb|AFV61129.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
trifolia]
Length = 440
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++ M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 100 LFREARSLIGEMKXAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 159
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 160 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 219
Query: 123 RI 124
I
Sbjct: 220 NI 221
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 61/118 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + +++ P+
Sbjct: 29 GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKXCDYSKAISIFSRLKRSGFTPDLVAY 88
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K +G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 89 NAMINVFGKAKLFREARSLIGEMKXAGVMPNTASYSTLLTMYVENKKFLEALSVFSEM 146
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 60/121 (49%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 169 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 228
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 229 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 288
Query: 122 N 122
+
Sbjct: 289 S 289
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 83/200 (41%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 205 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 264
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSG + + ++ Y ++ A LL E+
Sbjct: 265 TIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 324
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 325 DNIPRDTAIHILAG---AGRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 375
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 376 KYSNVVEVFDKMRGLGYFPD 395
>gi|326527465|dbj|BAK08007.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 363
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 5/208 (2%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y+ + S GV ++ FN +I+ Q GRF EA+ EM K C PN T
Sbjct: 158 YEVVHEVYSSAPRLGVELDTCCFNILIKGLCQFGRFNEALSLLDEMPKQDCRPNAMTYST 217
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ C VDE+ E F+ ++ I + Y +L++ + R AY L M +
Sbjct: 218 LMHFLCRNCRVDEAFELFERMRKEEIDADTVVYNILVSGLCREGRVTSAYDLFKSMSSQ- 276
Query: 124 ISNIHQVTG--QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
H +G Q++ N+ + + ++ E Y L++ + +
Sbjct: 277 --GCHPNSGTYQVLLDGLVASKNFVEAKDLVGMMSAESLRPSFSSYKLLIDGFCSVNCLD 334
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
A VL + +G P + KL+ S+
Sbjct: 335 DAHHVLKQMVDQGFVPRMSTWTKLLTSL 362
>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
Length = 509
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
Query: 5 KECQAILSRMSESG-VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+E IL RM E+G A + +++AVI+ + R ++A +M + C P+ T A
Sbjct: 347 EEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTA 406
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
++ +C G +DE++E FQ + G V+ Y +L+ Y ++ + D+A +++EM
Sbjct: 407 IIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRG 466
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158
I + V+ I ES + + +K+N E
Sbjct: 467 IQP-NVVSLSTIVDGLCKESRVEEARLLMEKMNFE 500
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 4/208 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +A+ +M E+G A + S+N +I + + R EA + + + +C P
Sbjct: 273 AGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPV 332
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ C + V+E+ + + +G PSV+ Y ++ K++R DDAY +L +M
Sbjct: 333 CTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKM 392
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ ++ VT I F +F +++ G L + YN L+
Sbjct: 393 RRAGCVPDV--VTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAA 450
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
+ A +++E RG+ P + + +V
Sbjct: 451 KVDEAIAMIEEMAGRGIQPNVVSLSTIV 478
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 100/239 (41%), Gaps = 23/239 (9%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM +SG + ++ ++ + + ++E+ + + EM P T V++ YC AG
Sbjct: 147 RMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAG 206
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI----H 128
+D++ + +K +G PS Y L+ K +R D+A L EM + ++
Sbjct: 207 RIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELF-EMAAGDVQDVIVYTS 265
Query: 129 QVTGQMIKGEFDDES--NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
++G G+ D+ + +M+E G YN ++ +L A +
Sbjct: 266 FISGLCKAGKLDEAKAVHVKMIE--------AGCAPDPVSYNVIIYSLCKDNRVSEAKEL 317
Query: 187 LDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLAT 245
+D+A +R P + V +V V + + V L +M E G+ P + T
Sbjct: 318 MDQAMERKCMPGV-----PVCTVLVDGLCKSRRVEEACVILERMLE---TGDRAPSVVT 368
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/192 (18%), Positives = 82/192 (42%), Gaps = 1/192 (0%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74
+ G N+ + N+++E F G EA + + + P++ T ++ +C A +
Sbjct: 9 ARPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQI 68
Query: 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134
++ E+K++GI P+++ + L+ + N D A + +M ++ +
Sbjct: 69 PQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKP-DAFLYTV 127
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194
+ G + + F+++ G Y L+ +L+ E+ ++ +E +G
Sbjct: 128 VIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKG 187
Query: 195 LFPELFRHNKLV 206
PEL + +V
Sbjct: 188 HSPELVTYATVV 199
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/190 (19%), Positives = 75/190 (39%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+G ++ + + I + G+ +EA +V+M + C P+ + ++ C V E
Sbjct: 254 AGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSE 313
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136
+KE + +P V +L+ KS R ++A +L+ M VT +
Sbjct: 314 AKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVI 373
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
V K+ G + Y A+++A +G + A + +RG
Sbjct: 374 DGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCA 433
Query: 197 PELFRHNKLV 206
++ +N L+
Sbjct: 434 LDVVAYNILI 443
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 52/110 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G+ +F ++I + ++A++ + +M ++ P+ V+ C
Sbjct: 74 LLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLC 133
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+D + F+ + SG LP + Y +L+ K+ +W+ + + +EM
Sbjct: 134 KINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEM 183
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 9/215 (4%)
Query: 21 RNSDSFNAVIEAFRQGGRFEEA---IKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
R++ S+N V+ A + G + A ++A C PN + ++ C L D++
Sbjct: 75 RDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQA 134
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
+ ++S+G+ V+ Y L+ + D A L+ EM + I V +++G
Sbjct: 135 VGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQG 194
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ W+ V VF +++ +G + Y L+++L +G ++A V+D +RGL P
Sbjct: 195 -YCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEP 253
Query: 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ +N L+ + EG AI V L KM E
Sbjct: 254 NVVTYNVLINCM----CKEGSVKEAIGV-LKKMSE 283
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 99/243 (40%), Gaps = 42/243 (17%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M ESG+ N ++++++ + + GR+E+ K +VEM + +P+ ++ C
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ + G+ P+V+ Y +L+ K +A G+L +M ++
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVV 291
Query: 130 VTGQMIKGEFD----DESNWQMVEYVFDK------------------------------- 154
+IKG D DE+ W + E V K
Sbjct: 292 TYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRA 351
Query: 155 -LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV------W 207
+ G + + YN L+ L + +A ++DE T GL P+ F ++ L+ W
Sbjct: 352 MMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMW 411
Query: 208 SVD 210
VD
Sbjct: 412 QVD 414
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 7/221 (3%)
Query: 2 GLYKECQAILSRMS---ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE 58
G + A+L MS N+ S+ ++ A ++A+ M +
Sbjct: 91 GHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADV 150
Query: 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
T ++ C A VD++ E E+ SGI P+V+ Y LL Y KS RW+D + E
Sbjct: 151 VTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVE 210
Query: 119 MHTNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
M I ++ TG + + V D + G + YN L+ +
Sbjct: 211 MSEKGIEPDVVMYTG--LIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKE 268
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSV-DVHRMWEG 217
G + A VL + +++G+ P++ +N L+ + DV M E
Sbjct: 269 GSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEA 309
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 96/218 (44%), Gaps = 4/218 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L + +L M +GV + ++ +I ++A++ EM + +PN
Sbjct: 130 LADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYS 189
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++L YC +G ++ + F E+ GI P V+ Y L+ K + A+G++D M
Sbjct: 190 SLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMD-MMVR 248
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
R + VT ++ E + + V K++ +G + YN L++ L + +
Sbjct: 249 RGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDE 308
Query: 183 AARVLDEAT--KRGLFPELFRHNKLVWSV-DVHRMWEG 217
A +L+E K + P + N ++ + D+ RM +
Sbjct: 309 AMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQA 346
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV----- 64
+LS M + G+ + ++ A + G E A + EM+ N L+ V
Sbjct: 419 LLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMD------NNFPLDVVAYSTM 472
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ C AG + +KE + I G+ P + Y +++ ++AKS + A G+L +M
Sbjct: 473 IHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQM 527
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 43/226 (19%)
Query: 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC------------------------ 54
V N +FN+VI+ GR +A + ME+ C
Sbjct: 323 VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAM 382
Query: 55 -----------DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103
+P+ T ++ +C VD +++ ++ GI P + Y LL
Sbjct: 383 ELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAM 442
Query: 104 AKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF---DDESNWQMVEYVFDKLNCEGY 160
+ + A L +EM N ++ + MI G D ++ ++++ + D EG
Sbjct: 443 CEQGMMERARNLFNEMDNNFPLDVVAYS-TMIHGACKAGDLKTAKELLKSIVD----EGL 497
Query: 161 GLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
Y+ ++ G E A VL + T G P++ + L+
Sbjct: 498 TPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLI 543
>gi|15231160|ref|NP_187922.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75311241|sp|Q9LK58.1|PP225_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13150
gi|10172602|dbj|BAB01406.1| unnamed protein product [Arabidopsis thaliana]
gi|66792658|gb|AAY56431.1| At3g13150 [Arabidopsis thaliana]
gi|332641781|gb|AEE75302.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 551
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 12/204 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM-EKVRCDPNER 59
G+ + + M E R SFNA++ A+ + +EA+K + E+ EK+ P+
Sbjct: 135 SGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLV 194
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T ++ C G +D+ F+E++ +G P ++ + LL + + + + + D M
Sbjct: 195 TYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLM 254
Query: 120 HTNRIS-NIH----QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ +S NI +V G +F D N + D + EG + YNAL+ A
Sbjct: 255 KSKNLSPNIRSYNSRVRGLTRNKKFTDALN------LIDVMKTEGISPDVHTYNALITAY 308
Query: 175 WCLGLRERAARVLDEATKRGLFPE 198
E + +E ++GL P+
Sbjct: 309 RVDNNLEEVMKCYNEMKEKGLTPD 332
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 2/182 (1%)
Query: 36 GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS-GILPSVM 94
G E A K + EM ++ C+ ++ A+LS Y + +DE+ + F+E+ GI P ++
Sbjct: 135 SGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLV 194
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
Y ++ + DD + +E+ N ++ + EF + + ++D
Sbjct: 195 TYNTMIKALCRKGSMDDILSIFEELEKNGF-EPDLISFNTLLEEFYRRELFVEGDRIWDL 253
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214
+ + +R YN+ + L A ++D G+ P++ +N L+ + V
Sbjct: 254 MKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNN 313
Query: 215 WE 216
E
Sbjct: 314 LE 315
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E I M ++ N S+N+ + + +F +A+ M+ P+ T
Sbjct: 243 LFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYN 302
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118
A+++ Y ++E + + E+K G+ P + YCML+ + K D A + +E
Sbjct: 303 ALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEE 358
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 80/196 (40%), Gaps = 12/196 (6%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
++A I R+ +F + +K +E + ++ +Y ++G+ + + + F E+
Sbjct: 90 YSAFIRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMP 149
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT-GQMI-----KGEF 139
+V + LL+ Y S + D+A E+ VT MI KG
Sbjct: 150 ELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSM 209
Query: 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
DD + +F++L G+ + +N LLE + L R+ D + L P +
Sbjct: 210 DD------ILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNI 263
Query: 200 FRHNKLVWSVDVHRMW 215
+N V + ++ +
Sbjct: 264 RSYNSRVRGLTRNKKF 279
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M G++ + ++NA+I A+R EE +K Y EM++ P+ T ++ + C G
Sbjct: 289 MKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGD 348
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+D + E +E +L Y ++ + + D+A L+
Sbjct: 349 LDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQLV 391
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 90/197 (45%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + G N ++N ++++ + G++ +A M + C P+ T ++ ++C
Sbjct: 328 LLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFC 387
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +D + E FQ + G LP + Y ++++ ++NR DDA LL+ M T
Sbjct: 388 KVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERM-TEAGCPPDV 446
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT I S V++ L GY L + + L++ L + A ++L E
Sbjct: 447 VTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLRE 506
Query: 190 ATKRGLFPELFRHNKLV 206
+ G P++ + L+
Sbjct: 507 MERNGSAPDVVAYTILI 523
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL M E+G A N ++N +I F + G +EA+ + +M + C P+ T ++ YC
Sbjct: 258 ILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYC 317
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ + QE+ G P+ + Y L+ KS ++ DA+ L +M R
Sbjct: 318 KQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLA-QMMLRRDCKPSH 376
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
T ++ F + +F + G + YN ++ + A ++L+
Sbjct: 377 FTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLER 436
Query: 190 ATKRGLFPELFRHNKLV 206
T+ G P++ +N +V
Sbjct: 437 MTEAGCPPDVVTYNSIV 453
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/201 (18%), Positives = 83/201 (41%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L M +G A + ++ +I F + + ++++ + EM C P T V+
Sbjct: 499 DAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVI 558
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C + V + + + G+ P + Y ++ KS+ +D+AY L M +
Sbjct: 559 DKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCA 618
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
VT ++ + S ++ + + +G YN++ + W ++A R
Sbjct: 619 PT-VVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFR 677
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+ RG P F ++ L+
Sbjct: 678 LFQAMKSRGCSPTPFMYSLLL 698
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 94/235 (40%), Gaps = 36/235 (15%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVI----------------EAFRQGG------------ 37
+ + +L RM+E+G + ++N+++ E R GG
Sbjct: 429 DARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLI 488
Query: 38 -------RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGIL 90
R ++A K EME+ P+ ++ +C A +D+S F E+ G +
Sbjct: 489 DGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCV 548
Query: 91 PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150
P+V+ Y +++ KS R D LL M ++ V +I G +S + E
Sbjct: 549 PTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYE- 607
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
++ + G + YN L++ L + + A +L+ G P+ +N +
Sbjct: 608 LYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSV 662
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 83/188 (44%), Gaps = 13/188 (6%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +++A + R +A +M + C PN T +++ +C G +DE+ F ++
Sbjct: 238 TYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQM 297
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIKGEF 139
+ P V Y +L+ Y K R D LL EM N I+ + + G++
Sbjct: 298 LENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKY 357
Query: 140 DDESNW-QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
D N QM+ + +C+ +N +++ +G + A + T RG P+
Sbjct: 358 IDAFNLAQMML----RRDCKPSHFT---FNLMIDMFCKVGQLDLAYELFQLMTDRGCLPD 410
Query: 199 LFRHNKLV 206
++ +N ++
Sbjct: 411 IYTYNIMI 418
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y E + M ++G A ++N +++ + R +EAI ME C P+ T +
Sbjct: 602 YDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNS 661
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
V + + D++ FQ +KS G P+ Y +LL + D A
Sbjct: 662 VFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQA 710
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 4/148 (2%)
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
T +LS + E+ + F+ + P + Y L+ + K+ + AY LLDEM
Sbjct: 134 TCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEM 193
Query: 120 HTNRISNIHQVTGQMIKGEFDD-ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
I + V +IKG D+ + +V Y + NC + Y L++AL
Sbjct: 194 EKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNC---APSVITYTILVDALCKSA 250
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
A+ +L++ + G P + +N L+
Sbjct: 251 RISDASLILEDMIEAGCAPNVVTYNTLI 278
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/191 (17%), Positives = 76/191 (39%), Gaps = 2/191 (1%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
+ G + + N ++ AF + + +EA + C P+ T +++ +C A
Sbjct: 125 QPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQ 184
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
++ E++ GI+P Y ++ + R D A +M N ++ +T ++
Sbjct: 185 QAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSV--ITYTIL 242
Query: 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ + + + G + YN L+ LG + A + ++ +
Sbjct: 243 VDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSC 302
Query: 196 FPELFRHNKLV 206
P++F +N L+
Sbjct: 303 SPDVFTYNILI 313
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 94/214 (43%), Gaps = 5/214 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M E GVA N ++N +I Q R EA + M++ PN + ++ YC
Sbjct: 291 LFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYC 350
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +D++ F ++KSSG PS+ Y +L+A ++++ ++ EM +S +
Sbjct: 351 SIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSP-SK 409
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT ++ N + ++ + G + Y L+ L +G + A+++
Sbjct: 410 VTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKS 469
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAI 223
+ L P +N +++ EG +Y A+
Sbjct: 470 LDEMHLKPNDVIYNTMIYGY----CKEGSSYRAL 499
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 93/197 (47%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M E G++ N + +I+ + G E + + +M ++ N+ T +++ +
Sbjct: 186 VLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFF 245
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL + E ++++K +GI+P+V Y ++ + ++A+ L DEM ++ +
Sbjct: 246 KMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVA-CNV 304
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT + G E E + ++ +G + YN L++ +G ++A+ + ++
Sbjct: 305 VTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQ 364
Query: 190 ATKRGLFPELFRHNKLV 206
G P L +N L+
Sbjct: 365 MKSSGQSPSLATYNILI 381
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I S M ++G+ + + +I G +EA K + ++++ PN+ ++ YC
Sbjct: 431 IYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYC 490
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G + +E+ +G++P+V Y + + K +W +A LL +M
Sbjct: 491 KEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDM 540
>gi|225452658|ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic [Vitis vinifera]
gi|296087770|emb|CBI35026.3| unnamed protein product [Vitis vinifera]
Length = 675
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 89/230 (38%), Gaps = 36/230 (15%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E + +L M GV ++ S++ ++ + + G++ EA+ + EM +VRC + T
Sbjct: 275 LFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCN 334
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV-------------------- 102
++ VY + E+ F ++ GI P ++ Y LL V
Sbjct: 335 VMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRK 394
Query: 103 ---------------YAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
Y KS + A L+ EM NR + +T I +D
Sbjct: 395 DIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQ-NRGIEPNAITYSTIISIWDKAGKLDR 453
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+F KL G + Y ++ A GL A R+L E + P
Sbjct: 454 AAMLFQKLRSSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIP 503
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N +I+ + + E+A EM+ +PN T
Sbjct: 380 LFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRGIEPNAITYS 439
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++S++ AG +D + FQ+++SSGI + Y ++ Y ++ A LL E+
Sbjct: 440 TIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHEL--K 497
Query: 123 RISNIHQVTGQMI 135
R NI + T I
Sbjct: 498 RPDNIPRETAITI 510
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 65/122 (53%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G++ + L +M + V+ + ++ +IE R+ + +AI + +++ P+
Sbjct: 204 GMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAY 263
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++V+ A L E++ E+++ G++P + Y LL++Y ++ ++ +A + EM+
Sbjct: 264 NSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNE 323
Query: 122 NR 123
R
Sbjct: 324 VR 325
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 89/209 (42%), Gaps = 19/209 (9%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
+ M + +A + +++ +I F + G F+ A+ +ME+ R +
Sbjct: 174 AHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSALSWLQKMEQDRVSGD--------- 224
Query: 67 VYCFAGLVDESKEQ---------FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
+ ++ L++ S++ F +K SGI P ++ Y ++ V+ K+ + +A LL
Sbjct: 225 LVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFGKAKLFREARLLLP 284
Query: 118 EMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
EM + V+ + + + + VF ++N L + N +++ L
Sbjct: 285 EMRAGGVMP-DTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQL 343
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
+ + A R+ K G+ P + +N L+
Sbjct: 344 DMAKEADRLFWSMRKMGIEPGIVSYNTLL 372
>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
Length = 616
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 15/191 (7%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+ ++ G+ E+A K + EM K C P+ T A++ V C G V+++ F +
Sbjct: 276 SYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGM 335
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD--- 141
G +P+V+ Y +L+ + + D LL+ M I Q +I+ F++
Sbjct: 336 LVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEM 395
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER------AARVLDEATKRGL 195
E + E + C YN ++ A++ +R+R AAR++DE RG
Sbjct: 396 EKGLDLFEKMSKGEECLP---NQDTYNIIISAMF---MRKRAEDMVLAARMVDEMVDRGY 449
Query: 196 FPELFRHNKLV 206
P F N+++
Sbjct: 450 LPRRFMFNRVL 460
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 5/200 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ + + M++ G A + ++NA+I+ + G E+A+ + M PN T
Sbjct: 287 AGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVT 346
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C AG +D + + +K+ G P V Y +L+ + + L ++M
Sbjct: 347 YTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMS 406
Query: 121 TNRISNIHQVT-GQMIKGEFDDESNWQMV--EYVFDKLNCEGYGLGMRF-YNALLEALWC 176
+Q T +I F + MV + D++ GY L RF +N +L L
Sbjct: 407 KGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVDEMVDRGY-LPRRFMFNRVLNGLML 465
Query: 177 LGLRERAARVLDEATKRGLF 196
G +E + ++L K LF
Sbjct: 466 TGNQELSRKLLRMQEKYRLF 485
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 16/202 (7%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
NS ++N +I+ GGR EEA + EME PN T+ ++ C A ++E+ + F
Sbjct: 253 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 312
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVTGQMIK 136
+ G P + YC L+ K + D+AY L ++M + N + + I
Sbjct: 313 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH 372
Query: 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196
G +D VF +L G + N ++ ++ G E+ + ++ G
Sbjct: 373 GRKEDGHK------VFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFL 426
Query: 197 PELFRHNKLVWSVDVHRMWEGG 218
P++ +S+ +H + + G
Sbjct: 427 PDVRS-----YSILIHGLTKAG 443
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 101/242 (41%), Gaps = 40/242 (16%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +M ++G N + ++I F GR E+ K + E+ + C P+ L
Sbjct: 338 GQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLL 397
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL--------------------- 100
+ AG V++ + F++I+S G LP V Y +L+
Sbjct: 398 NTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQ 457
Query: 101 -----------AV---YAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG--EFDDESN 144
AV + KS + AY +L+EM + G ++ G + D
Sbjct: 458 QGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDE 517
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
M +F++ +G L + Y++L++ +G + A +L+E K+GL P ++ N
Sbjct: 518 AYM---LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNS 574
Query: 205 LV 206
L+
Sbjct: 575 LL 576
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 11/211 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E I M + G A ++ ++NAV++ F + G+ +A + EM++ P T
Sbjct: 442 AGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVAT 501
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A++ +DE+ F+E KS GI +V+ Y L+ + K R D+AY +L+EM
Sbjct: 502 YGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMM 561
Query: 121 ----TNRISNIHQVTGQMIKGEFDDESNWQMVEY-VFDKLNCEGYGLGMRFYNALLEALW 175
T + + + ++K E E N +V + ++ C Y+ L+ L
Sbjct: 562 KKGLTPNVYTWNSLLDALVKAE---EINEALVCFQSMKEMKCPP---NTYTYSILINGLC 615
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ +A + K+GL P + + ++
Sbjct: 616 RVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 646
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 62/121 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E IL M + G+ N ++N++++A + EA+ + M++++C PN T
Sbjct: 548 GRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTY 607
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C +++ +Q+++ G++P+V+ Y +++ AK DAY L +
Sbjct: 608 SILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKA 667
Query: 122 N 122
N
Sbjct: 668 N 668
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 74/194 (38%), Gaps = 39/194 (20%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+ G+ + S+ ++I + GR EA + + +ME R P ++ Y AG
Sbjct: 141 LKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGR 200
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+++ + + ++ G +PSV+ + +L K + D+A L + M
Sbjct: 201 FEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK------------ 248
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEATK 192
D E N + D L CLG R E A R+LDE
Sbjct: 249 ------DAEPNSSTYNIIIDML--------------------CLGGRVEEAYRILDEMEH 282
Query: 193 RGLFPELFRHNKLV 206
LFP L N +V
Sbjct: 283 ASLFPNLLTVNIMV 296
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 94/239 (39%), Gaps = 47/239 (19%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIK---------------- 44
G E + + ++M + ++N +I + GRFE+A K
Sbjct: 163 AGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVS 222
Query: 45 ------------------AYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
+ E+ K +PN T ++ + C G V+E+ E++
Sbjct: 223 FNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEH 282
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT------GQMIKGEFD 140
+ + P+++ +++ K+ + ++AY + E + R N VT G KG+ D
Sbjct: 283 ASLFPNLLTVNIMVDRLCKARKLEEAYKIF-ESASQRGCNPDCVTYCSLIDGLGKKGQVD 341
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199
+ +F+K+ G+ Y +L+ + G +E +V E +RG P+L
Sbjct: 342 EAYR------LFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDL 394
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 97/240 (40%), Gaps = 34/240 (14%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG +E IL M + + N + N +++ + + EEA K + + C+P+ T
Sbjct: 267 GGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVT 326
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM- 119
+++ G VDE+ F+++ +G + + Y L+ + R +D + + E+
Sbjct: 327 YCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELI 386
Query: 120 ---------HTNRISNIHQVTGQMIKGE--FDDESNWQMV-------------------- 148
N + G++ KG F+D ++ +
Sbjct: 387 RRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQAR 446
Query: 149 --EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+F + +G+ L R YNA+++ G +A +L+E ++ + P + + +V
Sbjct: 447 ETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIV 506
>gi|410110093|gb|AFV61126.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
microcephala]
Length = 440
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L++E ++++ M +GV N+ S++ ++ + + +F EA+ + EM +++C + T
Sbjct: 100 LFREARSLIGEMKAAGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCN 159
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ VY G+ E+ + F ++ GI P+V+ Y LL VY + + +A L M
Sbjct: 160 IMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRK 219
Query: 123 RI 124
I
Sbjct: 220 NI 221
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 62/118 (52%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL+ + L +M + V + ++ +IE R+ + +AI + +++ P+
Sbjct: 29 GLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAY 88
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+++V+ A L E++ E+K++G++P+ Y LL +Y ++ ++ +A + EM
Sbjct: 89 NAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTMYVENKKFLEALSVFSEM 146
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ KE + M + G+ N S+N ++ + F EAI + M++ + N T
Sbjct: 169 GMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 228
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +Y +++ QE++S GI P+ + Y +++++ K + D A L ++ +
Sbjct: 229 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRS 288
Query: 122 NRISNIHQVTGQ 133
+ I I Q+ Q
Sbjct: 289 SGIE-IDQILFQ 299
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ E + M + +N ++N+++ + + E+A EM+ +PN T
Sbjct: 205 LFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYS 264
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM--- 119
++S++ G +D + FQ+++SSGI + + ++ Y ++ A LL E+
Sbjct: 265 TIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRP 324
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ R + IH + G G ++ + YVF + G + + ++ L
Sbjct: 325 DNIPRDTAIHILAGA---GRIEEAT------YVFRQAIDAGEVKDITVFERMIHLLSKYK 375
Query: 179 LRERAARVLDEATKRGLFPE 198
V D+ G FP+
Sbjct: 376 KYSNVVEVFDKMRGLGYFPD 395
>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
Length = 394
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 5 KECQAILSRMSESG-VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+E IL RM E+G A + +++AVI+ + R ++A +M + C P+ T A
Sbjct: 274 EEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTA 333
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +C G +DE++E FQ + G V+ Y +L+ Y ++ + D+A +++EM
Sbjct: 334 IIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAAKVDEAIAMIEEM 389
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 11/192 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +A+ +M E+G A + S+N +I + + R EA + + + +C P
Sbjct: 200 AGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPV 259
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ C + V+E+ + + +G PSV+ Y ++ K++R DDAY +L +M
Sbjct: 260 CTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKM 319
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ ++ VT I F +F +++ G + YN L+ +C
Sbjct: 320 RRAGCVPDV--VTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRG-YC-- 374
Query: 179 LRERAARVLDEA 190
RAA+V DEA
Sbjct: 375 ---RAAKV-DEA 382
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 100/239 (41%), Gaps = 23/239 (9%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M +SG + ++ ++ + + ++E+ + + EM P T V++ YC AG
Sbjct: 74 QMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAG 133
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI----H 128
+D++ + +K +G PS Y L+ K +R ++A L EM + ++
Sbjct: 134 RIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELF-EMAAGDVQDVIVYTS 192
Query: 129 QVTGQMIKGEFDDES--NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
++G G+ D+ + +M+E G YN ++ +L A +
Sbjct: 193 FISGLCKAGKLDEAKAVHVKMIE--------AGCAPDPVSYNVIIYSLCKDNRVSEAKEL 244
Query: 187 LDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLAT 245
+D+A +R P + V +V V + + V L +M E G+ P + T
Sbjct: 245 MDQAMERKCMPGV-----PVCTVLVDGLCKSRRVEEACVILERMLE---AGDRAPSVVT 295
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 80/195 (41%), Gaps = 10/195 (5%)
Query: 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76
+G ++ + + I + G+ +EA +V+M + C P+ + ++ C V E
Sbjct: 181 AGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSE 240
Query: 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQVT 131
+KE + +P V +L+ KS R ++A +L+ M + V
Sbjct: 241 AKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVI 300
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+ K + D++ V K+ G + Y A+++A +G + A +
Sbjct: 301 DGLCKADRLDDAYI-----VLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMH 355
Query: 192 KRGLFPELFRHNKLV 206
+RG ++ +N L+
Sbjct: 356 ERGCASDVVAYNILI 370
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L +M +G + ++ A+I+AF + GR +EA + + M + C + ++ YC
Sbjct: 315 VLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYC 374
Query: 70 FAGLVDESKEQFQEIKSSGI 89
A VDE+ +E+ GI
Sbjct: 375 RAAKVDEAIAMIEEMAGRGI 394
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 10/184 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M +G+ +F ++I + +A++ + +M ++ P+ V+ C
Sbjct: 1 LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNRIS 125
+D + F+++ SG LP + Y +L+ K+ +W+ + + +EM H+ +
Sbjct: 61 KINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELV 120
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V K D++ M +L G Y+ L++ L C R AR
Sbjct: 121 TYATVVNGYCKAGRIDQALSLM-----RRLKGTGRSPSGSLYSTLIDGL-CKHDRHEEAR 174
Query: 186 VLDE 189
L E
Sbjct: 175 ELFE 178
>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 666
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 5/206 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + Q + S M E G+A N ++N +I+ F GR+ +A + +M + +P+ T
Sbjct: 310 GHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTF 369
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++S G + E+++ E+ I P + Y ++ + K NR+DDA + D M +
Sbjct: 370 NALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 429
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + + + DE + E ++ G YN L+ +
Sbjct: 430 PDVVTFNTIIDVYCRAKRVDEGMQLLRE-----ISRRGLVANTTTYNTLIHGFCEVDNLN 484
Query: 182 RAARVLDEATKRGLFPELFRHNKLVW 207
A + E G+ P+ N L++
Sbjct: 485 AAQDLFQEMISHGVCPDTITCNILLY 510
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 85/219 (38%), Gaps = 36/219 (16%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A++++M G+ + ++ ++ + G + A+ +ME+ P+
Sbjct: 240 GRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIY 299
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++ C G +++ F E+ GI P+V Y ++ + RW DA LL +M
Sbjct: 300 SAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM-- 357
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ E N ++ +NAL+ A G
Sbjct: 358 -----------------IEREINPDVLT-----------------FNALISASVKEGKLF 383
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
A ++ DE R +FP+ +N +++ H ++ +
Sbjct: 384 EAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH 422
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 7/206 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K +LS+M E+ + + ++A+I+ + G +A + EM + PN T
Sbjct: 275 GDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTY 334
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G +++ +++ I P V+ + L++ K + +A L DEM
Sbjct: 335 NCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLH 394
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
I MI G F + + +++FD + + +N +++ ++C R
Sbjct: 395 RCIFPDTVTYNSMIYG-FCKHNRFDDAKHMFDLMASP----DVVTFNTIID-VYCRAKRV 448
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ ++L E ++RGL +N L+
Sbjct: 449 DEGMQLLREISRRGLVANTTTYNTLI 474
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 57/130 (43%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + M GV ++ + N ++ F + + EEA++ + ++ + D + ++
Sbjct: 487 QDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHG 546
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C VDE+ + F + G+ P V Y ++++ + + DA L +M N
Sbjct: 547 MCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPD 606
Query: 128 HQVTGQMIKG 137
+ +I+G
Sbjct: 607 NSTYNTLIRG 616
>gi|356574710|ref|XP_003555488.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g23020-like [Glycine max]
Length = 821
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 108/279 (38%), Gaps = 39/279 (13%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE M + GVA + +FN +I GR EE +ME++RC PN RT
Sbjct: 294 AGQLKEASQTFVEMLKQGVAPTTVTFNTMINICGNHGRLEEVSLLVRKMEELRCSPNTRT 353
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S++ + + + F+ +K + + P ++ Y LL Y+ +A L+ EM
Sbjct: 354 YNILISLHAKHDDIGMATKYFETMKEACLEPDLVSYRTLLYAYSIRKMIREAEELVKEMD 413
Query: 121 TNRISNIHQVTGQMIK------GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNA---LL 171
R+ I Q T + G D W + +V + E Y + Y L
Sbjct: 414 KRRLE-IDQYTQSALTRMYIEAGMLDRSLLWFLRFHVAGNMTSECYAANIDAYGEHGHTL 472
Query: 172 EA----LWCLGLR--------------------ERAARVLDEATKRGLFPELFRHNKLVW 207
EA +WC + E+A ++ D K G+ + + L
Sbjct: 473 EAEKVFIWCQKQKNLSVLEFNVMIKAYGIGKCYEKACQLFDSMEKHGVVADRCSYTSL-- 530
Query: 208 SVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATV 246
+H + +L KM E ++ + +P A +
Sbjct: 531 ---IHILASADQPHIAKPYLKKMQEAGLVSDCIPYCAVI 566
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE + M ++G+ N+ +N++I+ + + E+A +AY ++ P +
Sbjct: 607 AGRVKEAIGYVDEMKKAGLPGNTVIYNSLIKLYAKIDNLEKAKEAYKLLQLSDEGPGVYS 666
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-------- 112
++ +Y +VD++KE F+ +K +G + + M+L +Y K R+D+A
Sbjct: 667 SNCMIDLYVKRSMVDQAKEIFETLKKNGA-ANEFTFAMMLCLYKKIERFDEAIQIAKQIR 725
Query: 113 -YGLLDEMHTNRISNIHQVTGQ 133
G L ++ N + +++ + G+
Sbjct: 726 KLGPLTDLSYNNVLDLYAIAGR 747
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L +M E+G+ + + AVI +F + G+ E Y EM + P+ +++V+
Sbjct: 547 LKKMQEAGLVSDCIPYCAVISSFAKLGQLEMTEDIYREMIRHGVQPDVIVHGILINVFSD 606
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN---RWDDAYGLL 116
AG V E+ E+K +G+ + + Y L+ +YAK + + +AY LL
Sbjct: 607 AGRVKEAIGYVDEMKKAGLPGNTVIYNSLIKLYAKIDNLEKAKEAYKLL 655
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/194 (18%), Positives = 84/194 (43%), Gaps = 1/194 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y++ + M + GV + S+ ++I + A +M++ +
Sbjct: 502 GKCYEKACQLFDSMEKHGVVADRCSYTSLIHILASADQPHIAKPYLKKMQEAGLVSDCIP 561
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AV+S + G ++ +++ ++E+ G+ P V+ + +L+ V++ + R +A G +DEM
Sbjct: 562 YCAVISSFAKLGQLEMTEDIYREMIRHGVQPDVIVHGILINVFSDAGRVKEAIGYVDEMK 621
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + +IK + N + + + L G G+ N +++ +
Sbjct: 622 KAGLPGNTVIYNSLIK-LYAKIDNLEKAKEAYKLLQLSDEGPGVYSSNCMIDLYVKRSMV 680
Query: 181 ERAARVLDEATKRG 194
++A + + K G
Sbjct: 681 DQAKEIFETLKKNG 694
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 66/179 (36%), Gaps = 33/179 (18%)
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL----------DEMHTNRISNIHQVTG 132
E+ + GI + Y L+ VY+K R DDA L DE+ + +++ G
Sbjct: 172 EMNARGIAATCSTYGTLIDVYSKGGRRDDALSWLNMMLGQGVQPDEVTMVIVVQLYKKAG 231
Query: 133 QMIKGE------------------FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+ KGE N + +++ C G YN L++
Sbjct: 232 EFQKGEEFFRKWSSGKPLRSKSKPLRSNDNVVASPELDERVACANASFGSHTYNTLIDTY 291
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233
G + A++ E K+G+ P N ++ H G +S+ + KM E+
Sbjct: 292 GKAGQLKEASQTFVEMLKQGVAPTTVTFNTMINICGNH-----GRLEEVSLLVRKMEEL 345
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M GV + +I F GR +EAI EM+K N +++ +Y
Sbjct: 581 IYREMIRHGVQPDVIVHGILINVFSDAGRVKEAIGYVDEMKKAGLPGNTVIYNSLIKLYA 640
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
++++KE ++ ++ S P V ++ +Y K + D A + + + N +N
Sbjct: 641 KIDNLEKAKEAYKLLQLSDEGPGVYSSNCMIDLYVKRSMVDQAKEIFETLKKNGAAN 697
>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
Length = 535
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 91/222 (40%), Gaps = 10/222 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + M E G + ++ +I+ F + G A M+K PN
Sbjct: 295 GRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIY 354
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + + ++E+ E +Q I GILPS + Y ++ K + D+A LL EM
Sbjct: 355 TMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQR 414
Query: 122 NRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLN---CEGYGLGMRFYNALLEALWCL 177
+ VT MI M E FD L G Y +L++ L
Sbjct: 415 RKEELEPSIVTYSMI---IHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGA 471
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSV---DVHRMWE 216
G RA +L+E K G+FP+ + LV + DV W+
Sbjct: 472 GKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSDVDAAWD 513
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 96/212 (45%), Gaps = 7/212 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E A++ M++ A ++ S+ IEA GR EEA K + M + C P+ T
Sbjct: 260 GKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTY 319
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G + + + + + + P+ Y M++ + KS+R ++A L +
Sbjct: 320 GIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILK 379
Query: 122 NRI----SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ I + V + K + DE+ + E K E + Y+ ++ L +
Sbjct: 380 DGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEP---SIVTYSMIIHGLGKV 436
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
G+ ERA +L E G+ P+ F + L+ ++
Sbjct: 437 GMEERAFDLLAEMIDNGVIPDCFTYTSLIQTL 468
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 104/234 (44%), Gaps = 46/234 (19%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
R+ E+ A +S ++ A+++ + G ++ ++ Y +M +C+P T ++ C A
Sbjct: 96 RLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAH 155
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----------HT 121
V+ + + F+E+ G P ++ Y L+ +K+ R D+A L+D M +T
Sbjct: 156 KVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYT 215
Query: 122 NRISNIHQ-----------------------------VTGQMIKGEFDDESNWQMVEYVF 152
+ ++ + + VTG + G+ E + ++E +
Sbjct: 216 SIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKV--EEAFAVMEEMA 273
Query: 153 DKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
D+ +C + Y +EAL+ +G RE A +V + ++G P++ + ++
Sbjct: 274 DR-DCAPDTIS---YTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIII 323
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E + ++ M G + ++ +++ + GR +EA+K EM + R P T
Sbjct: 189 AGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDT 248
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ Y G V+E+ +E+ P + Y M + R ++A + + M
Sbjct: 249 YSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMV 308
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
G +I F E + +V ++ Y +++
Sbjct: 309 EKGCKPDMHTYGIIIDN-FCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRL 367
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E A + K G+ P +N ++
Sbjct: 368 EEALELYQRILKDGILPSTVTYNTVI 393
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 95/209 (45%), Gaps = 1/209 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG ++ + +M + G ++N +I + G A + M++ C+P+E T
Sbjct: 463 GGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWT 522
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++S + G ++ + FQE+ G+ P+ + Y L+ ++K + D A LL+ M
Sbjct: 523 YNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERME 582
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + +I G E+ + E + DK+ +G + Y L++ L G
Sbjct: 583 EMGCNPNVESYNAVING-LSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRT 641
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ A ++ + KR P L+ ++ L++ +
Sbjct: 642 QFAFKIFHDMEKRKCLPNLYTYSSLIYGL 670
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ E + I +M+E G+ N ++ +I+ + GR + A K + +MEK +C PN T +
Sbjct: 606 FSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSS 665
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ C G DE++ +E++ G+ P + + L+ + R D A+ LL M
Sbjct: 666 LIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRM 721
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 1/194 (0%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G+ N+ ++NA+I GGRF A+K + ME N +T ++ C G
Sbjct: 405 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGG 464
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++++ F+++ G LP+V+ Y L+ Y ++A LLD M N
Sbjct: 465 DIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYN 524
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+++ G F + + F ++ G Y L++ G + A +L+ +
Sbjct: 525 ELVSG-FSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEE 583
Query: 193 RGLFPELFRHNKLV 206
G P + +N ++
Sbjct: 584 MGCNPNVESYNAVI 597
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L RM E G N +S+NAVI + RF EA K +M + PN T ++
Sbjct: 576 SLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGL 635
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNR 123
C G + + F +++ LP++ Y L+ + + D+A LL EM +
Sbjct: 636 CRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDE 695
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW--CLGLRE 181
++ + G ++ G D + ++ + D G R Y+ LL+ L CL L E
Sbjct: 696 VTFTSLIDGFVVLGRIDHA--FLLLRRMVDV----GCKPNYRTYSVLLKGLQKECLLLEE 749
Query: 182 RAA 184
+ A
Sbjct: 750 KVA 752
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 2/183 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + ILS++ + ++ + ++ ++I + + A + M K CDPN T
Sbjct: 254 GKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTY 313
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C G VDE+ + +E+ GI P+V Y + + ++A L+ M
Sbjct: 314 STLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKK 373
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
Q +I G ++ ++ K+ EG YNAL+ L C+G R
Sbjct: 374 RGCRPNVQTYTALISG-LSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINEL-CVGGRF 431
Query: 182 RAA 184
A
Sbjct: 432 STA 434
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+RMSE G D+++ ++ + GRF EA + +M++ P+ ++L +C
Sbjct: 776 LLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHC 835
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
VD + + F I++ G + Y L+ K+ + ++A L D M + + I
Sbjct: 836 KNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEI 895
Query: 125 SNIHQVTGQMIKGEFD 140
V G + +GE D
Sbjct: 896 VWTVLVDGLLKEGELD 911
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 97/244 (39%), Gaps = 36/244 (14%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L M G+A + +F ++I+ F GR + A M V C PN RT
Sbjct: 674 GKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTY 733
Query: 62 EAVL-------------------SVYCFAG--------LVDESKEQFQEIKSSGILPSVM 94
+L +VY F+ +V + EI G P++
Sbjct: 734 SVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEI---GCEPTLD 790
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154
Y L++ + R+ +A L+ +M ++ ++ + ++ +F
Sbjct: 791 TYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALK-IFHS 849
Query: 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214
+ +G+ L + Y AL+ AL G E A + D ++ + +++VW+V V +
Sbjct: 850 IEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKE-----WNADEIVWTVLVDGL 904
Query: 215 WEGG 218
+ G
Sbjct: 905 LKEG 908
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 90/216 (41%), Gaps = 9/216 (4%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M SG+ + +FN +I + G+ EA ++ + P+ T +++ +C
Sbjct: 230 QMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNR 289
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVT 131
+D + F + G P+ + Y L+ R D+A +L+EM I ++ T
Sbjct: 290 NLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYT 349
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+ + + + ++ G ++ Y AL+ L LG E A + +
Sbjct: 350 LPITA--LCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKML 407
Query: 192 KRGLFPELFRHNKLVWSVDVHRMWEGGAY-TAISVW 226
K GL P +N L+ + V GG + TA+ ++
Sbjct: 408 KEGLVPNTVTYNALINELCV-----GGRFSTALKIF 438
>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 4/176 (2%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAY---VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
SFN+V+ Q G + A++ Y V + + PN + ++ C GLVD + E F
Sbjct: 145 SFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNAIELF 204
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+E+ +P YC L+ K +R D+A LLDEM +I G
Sbjct: 205 REMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLING-LCK 263
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ ++ V + D + +G YN L+ L G ++A +LD P
Sbjct: 264 KGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVP 319
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 5/221 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++L M G + +FN +I + G F K M C PNE T ++
Sbjct: 234 EAVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLI 293
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C G +D++ + SS +P+ + Y ++ K R D +L M
Sbjct: 294 HGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYI 353
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
V ++ G F + + + + + ++ +G L Y+AL++ L + A +
Sbjct: 354 VNEYVYSVLVSGLFKEGKSEEAMRLFKESMD-KGCKLNTVLYSALVDGLCRDRKPDEAMK 412
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226
+L E T +G P F + L+ G ++ AI VW
Sbjct: 413 ILSEMTDKGCAPNAFTFSSLMKGF----FEVGNSHKAIEVW 449
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 60/114 (52%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ILS M++ G A N+ +F+++++ F + G +AI+ + +M K+ C NE ++
Sbjct: 409 EAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLI 468
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G V E+ + ++ ++G P V+ Y ++ + ++A L +EM
Sbjct: 469 HGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEM 522
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 16/206 (7%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
+ N SFN +I++ + G + AI+ + EM +C P+ T ++ C +DE+
Sbjct: 176 NILPNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEA 235
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIHQVTG 132
E++ G PS + +L+ K + L+D M N ++ + G
Sbjct: 236 VSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHG 295
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+KG+ D + + D++ Y ++ L G ARVL +
Sbjct: 296 LCLKGKLDKALS------LLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEE 349
Query: 193 RGLFPELFRHNKLVWSVDVHRMWEGG 218
RG + N+ V+SV V +++ G
Sbjct: 350 RG-----YIVNEYVYSVLVSGLFKEG 370
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ M G+ + + I A G +E+A + +V+M+ C+PN T
Sbjct: 299 GRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 358
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A++S C +GL+ + F + G+ P+ + Y L+ + ++ R A+ +L+ M
Sbjct: 359 TALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR 418
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N S +MIKG + + + V + + G+ + YN +++ G
Sbjct: 419 NGCSPNIVTYNEMIKG-YCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTT 477
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+LD G P+ + + +L+
Sbjct: 478 SALRILDLMRDGGCKPDEWSYTELI 502
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 92/208 (44%), Gaps = 1/208 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ +++ M + G + N ++N +I+ + G A++ M C P+E +
Sbjct: 439 GDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSY 498
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C ++ + F E+ G+ P+ + Y L+ Y K + D A LL+ M
Sbjct: 499 TELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKR 558
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ Q +I G ++N+ E + + EG + Y A+++ L G
Sbjct: 559 SGCRPNVQTYNVLIHG-LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTS 617
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209
A + ++ ++G P L ++ L+ ++
Sbjct: 618 LALEMFNKMIEQGCLPNLLTYSSLIRAL 645
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 90/219 (41%), Gaps = 23/219 (10%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G+ N ++ A+I+ + G A++ + +M + C PN T +++ G
Sbjct: 591 MIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGK 650
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
V+E++ F E++ G++P + Y ++ Y S + + A+ L M G
Sbjct: 651 VEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGV 710
Query: 134 MIKGEFDD-----------------------ESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170
+IKG ++ ++ V + KL GL ++ NAL
Sbjct: 711 LIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNAL 770
Query: 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
+ L G A +L +GL P+ +N L+ S+
Sbjct: 771 VSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSL 809
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 88/209 (42%), Gaps = 44/209 (21%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + I+ ++ ES ++ ++ ++ ++I + + A++ + +M K C+PN T
Sbjct: 229 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 288
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C +G V+E+ + +E+ GILP+
Sbjct: 289 STLINGLCDSGRVNEAFDLIREMILHGILPTA---------------------------- 320
Query: 122 NRISNIHQVTGQMIK----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
H TG +I G ++D W++ F + +G + Y AL+ L
Sbjct: 321 ------HTCTGPIIALCDMGCYEDA--WRL----FVDMKNKGCEPNVYTYTALISGLCVS 368
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
GL + A + ++ G+FP +N L+
Sbjct: 369 GLLKVAIGLFHRMSRDGVFPNTVTYNALI 397
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 96/266 (36%), Gaps = 41/266 (15%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEA---------------IKAY 46
GL K + RMS GV N+ ++NA+I + R + A I Y
Sbjct: 369 GLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTY 428
Query: 47 VEMEKVRC---DP-----------------NERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
EM K C DP N T ++ YC +G + ++
Sbjct: 429 NEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRD 488
Query: 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146
G P Y L+ + K ++ + A+GL +EM + + +I G DE
Sbjct: 489 GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE-KLD 547
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ + + G ++ YN L+ L A + + G+FP N +
Sbjct: 548 TATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFP-----NVVT 602
Query: 207 WSVDVHRMWEGGAYTAISVWLNKMYE 232
++ + + + G+ + NKM E
Sbjct: 603 YTAMIDGLCKNGSTSLALEMFNKMIE 628
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRF---EEAIKAYVEMEKVRCDPNERTLEAVL 65
++L M SG N ++N +I + F EE K +E E + PN T A++
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE-EGIF--PNVVTYTAMI 607
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----- 120
C G + E F ++ G LP+++ Y L+ + + ++A L E+
Sbjct: 608 DGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLI 667
Query: 121 TNRISNIHQVTGQMIKGEFDDESNW 145
+ I+ + + ++ G+ + N+
Sbjct: 668 PDEITYVKMIEAYIMSGKVEHAFNF 692
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,851,747,176
Number of Sequences: 23463169
Number of extensions: 152996661
Number of successful extensions: 393410
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6091
Number of HSP's successfully gapped in prelim test: 2775
Number of HSP's that attempted gapping in prelim test: 336337
Number of HSP's gapped (non-prelim): 43760
length of query: 248
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 109
effective length of database: 9,097,814,876
effective search space: 991661821484
effective search space used: 991661821484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)