BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039342
         (248 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From
           Trypanosoma Cruzi
 pdb|1BW0|B Chain B, Crystal Structure Of Tyrosine Aminotransferase From
           Trypanosoma Cruzi
          Length = 416

 Score = 30.8 bits (68), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
           C+ YG+GM FYN   E  W   L E   R+ D+ TK
Sbjct: 145 CKAYGIGMHFYNCRPENDWEADLDE-IRRLKDDKTK 179


>pdb|3E4B|A Chain A, Crystal Structure Of Algk From Pseudomonas Fluorescens
           Wcs374r
 pdb|3E4B|B Chain B, Crystal Structure Of Algk From Pseudomonas Fluorescens
           Wcs374r
 pdb|3E4B|C Chain C, Crystal Structure Of Algk From Pseudomonas Fluorescens
           Wcs374r
 pdb|3E4B|D Chain D, Crystal Structure Of Algk From Pseudomonas Fluorescens
           Wcs374r
          Length = 452

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 24/197 (12%)

Query: 67  VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH------ 120
           +Y   G  D+  +  + I  + +  + +CY  L  VY K  + +    LL +M       
Sbjct: 150 LYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209

Query: 121 ---TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
                R+ ++ +V G    G  D+++   ++E +       GY         LL     L
Sbjct: 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI-----APGYPASWVSLAQLLYDFPEL 264

Query: 178 GLRER------AARVLDEATKRGLFPELFRHNKLVW----SVDVHRMWEGGAYTAISVWL 227
           G  E+        R  D+     L  +L+   K V     + + H     G   A   +L
Sbjct: 265 GDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGREVAADYYL 324

Query: 228 NKMYEMFMMGEDLPQLA 244
            ++Y    +G+  PQ A
Sbjct: 325 GQIYRRGYLGKVYPQKA 341


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,394,506
Number of Sequences: 62578
Number of extensions: 297580
Number of successful extensions: 701
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 2
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)