BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039342
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 387 bits (994), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/247 (73%), Positives = 214/247 (86%), Gaps = 1/247 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL KE +AILSR+ +SG+ RN D+FNA IEA++QGG+FEEA+K YV+MEK RCDP+ERT
Sbjct: 505 GGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERT 564
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
LEAVLSVY FA LVDE +EQF+E+K+S ILPS+MCYCM+LAVY K+ RWDD LL+EM
Sbjct: 565 LEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEML 624
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+NR+SNIHQV GQMIKG++DD+SNWQ+VEYV DKLN EG GLG+RFYNALL+ALW LG +
Sbjct: 625 SNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQK 684
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDL 240
ERAARVL+EATKRGLFPELFR NKLVWSVDVHRM EGG YTA+SVWLN + +M + G DL
Sbjct: 685 ERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDINDMLLKG-DL 743
Query: 241 PQLATVV 247
PQLA VV
Sbjct: 744 PQLAVVV 750
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 9/188 (4%)
Query: 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82
+ F V + F G ++ +++ + M++ + C PNE ++S+ GL+D+ E F
Sbjct: 106 NDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFD 165
Query: 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS----NIHQVTGQMIKGE 138
E+ S G+ SV Y L+ Y ++ R++ + LLD M +IS + V +G
Sbjct: 166 EMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGG 225
Query: 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
D W+ + +F ++ EG + YN LL A GL + A V G+ P+
Sbjct: 226 LD----WEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPD 281
Query: 199 LFRHNKLV 206
L ++ LV
Sbjct: 282 LTTYSHLV 289
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 65/123 (52%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGL+++ + IL M+ + + +S ++ VIEAF Q +EEA+ A+ M +V +P+ T
Sbjct: 435 GGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIET 494
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L + GLV ES+ + SGI + + + Y + ++++A +M
Sbjct: 495 FHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDME 554
Query: 121 TNR 123
+R
Sbjct: 555 KSR 557
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L K C +L M+ G + S+N ++EA+ + G +EA+ + +M+ C PN T
Sbjct: 298 LEKVCD-LLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYS 356
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L+++ +G D+ ++ F E+KSS P Y +L+ V+ + + + L +M
Sbjct: 357 VLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDM 413
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 94/219 (42%), Gaps = 6/219 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + +M +G N+++++ ++ F Q GR+++ + ++EM+ DP+ T
Sbjct: 331 GSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATY 390
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ V+ G E F ++ I P + Y ++ K +DA +L M
Sbjct: 391 NILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTA 450
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
N I + +I+ F + ++ F+ ++ G + +++LL + GL +
Sbjct: 451 NDIVPSSKAYTGVIEA-FGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVK 509
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220
+ +L G+ N+ ++ + +GG +
Sbjct: 510 ESEAILSRLVDSGI-----PRNRDTFNAQIEAYKQGGKF 543
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 7/223 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +C + M GV+R+ S+ A+I A+ + GR+E +++ M+ + P+ T
Sbjct: 155 GLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTY 214
Query: 62 EAVLSVYCFAGLVDES-KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ GL E F E++ GI P ++ Y LL+ A D+A + M+
Sbjct: 215 NTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMN 274
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I +++ F + V + ++ G + YN LLEA G
Sbjct: 275 DGGIVPDLTTYSHLVE-TFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSI 333
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAI 223
+ A V + G P N +SV ++ + G Y +
Sbjct: 334 KEAMGVFHQMQAAGCTP-----NANTYSVLLNLFGQSGRYDDV 371
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 107/208 (51%), Gaps = 4/208 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ ++L M++ + + +FNA+I+AF + G+F +A + Y EM ++ PN T
Sbjct: 226 GRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTY 285
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C G VDE+++ F +++ G P V+ Y L+ + K + DDA + EM
Sbjct: 286 TSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQ 345
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
++ +I+G F + + VF + G +R YN LL L G +
Sbjct: 346 KGLTGNTITYTTLIQG-FGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVK 404
Query: 182 RAARVLDEATKR---GLFPELFRHNKLV 206
+A + ++ KR G+ P ++ +N L+
Sbjct: 405 KALMIFEDMQKREMDGVAPNIWTYNVLL 432
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 1/199 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ L +M + G + +F ++I F G R EEA+ +M ++ P+ ++
Sbjct: 127 SSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDS 186
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G V+ + F ++++ GI P V+ Y L+ S RW DA LL M T R
Sbjct: 187 LCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGM-TKRKIKP 245
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+T + F E + E +++++ + Y +L+ G + A ++
Sbjct: 246 DVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMF 305
Query: 188 DEATKRGLFPELFRHNKLV 206
+G FP++ + L+
Sbjct: 306 YLMETKGCFPDVVAYTSLI 324
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/189 (18%), Positives = 80/189 (42%), Gaps = 1/189 (0%)
Query: 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77
GV+ + + N ++ F Q + A +M K+ +P+ T ++++ +C ++E+
Sbjct: 102 GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEA 161
Query: 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137
++ GI P V+ Y ++ K+ + A L D+M I + ++ G
Sbjct: 162 MSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221
Query: 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197
+ W+ + + + + +NAL++A G A + +E + + P
Sbjct: 222 -LCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAP 280
Query: 198 ELFRHNKLV 206
+F + L+
Sbjct: 281 NIFTYTSLI 289
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 89/207 (42%), Gaps = 3/207 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E +++++M E G+ + + +I++ + G A+ + +ME P+
Sbjct: 155 GNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVM 214
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++++ C +G ++ + + I P V+ + L+ + K ++ DA L +EM
Sbjct: 215 YTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMI 274
Query: 121 TNRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
I+ NI T +I G F E +F + +G + Y +L+
Sbjct: 275 RMSIAPNIFTYT-SLING-FCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKK 332
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ A ++ E +++GL + L+
Sbjct: 333 VDDAMKIFYEMSQKGLTGNTITYTTLI 359
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD---PNERTLEAV 64
Q + S M GV N ++N ++ G+ ++A+ + +M+K D PN T +
Sbjct: 372 QEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVL 431
Query: 65 LSVYCFAGLVDESKEQFQEIK 85
L C+ G ++++ F++++
Sbjct: 432 LHGLCYNGKLEKALMVFEDMR 452
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 7/212 (3%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+S+ G++ + +FN +I F + G E A K M+K C+PN A+++ +C G
Sbjct: 259 ISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGK 318
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+ E+K+ F E+K +G+ + Y L+ + ++ D+A LL EM +R +T
Sbjct: 319 IQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASR-CRADTLTYN 377
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+I E + + D+ EG L Y +L AL C G E+A + L ++R
Sbjct: 378 VILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSER 437
Query: 194 GLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
G++P + W+ V R+ E G YT I V
Sbjct: 438 GIWP-----HHATWNELVVRLCESG-YTEIGV 463
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 92/201 (45%), Gaps = 3/201 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERTLEAVLSV 67
AIL +M F ++ F + ++ ++ + ++ + R P+ + L++
Sbjct: 110 AILHQMKYETCRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAISTCLNL 169
Query: 68 YCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+G V+ S++ K + G+ P+ + +L+ + K+ + A+ +++EM + IS
Sbjct: 170 LIDSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISY 229
Query: 127 IHQVT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +T ++ F + + VE D ++ EG +N ++ G ERA +
Sbjct: 230 PNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKK 289
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+LD K G P ++ ++ L+
Sbjct: 290 ILDFMKKNGCNPNVYNYSALM 310
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGI-LPSVMCYCMLLAVYAKSNRWDDAYG 114
PN ++ +C G ++ + +E+K SGI P+ + Y L+ +R +A
Sbjct: 194 PNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVE 253
Query: 115 LLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
L ++M + + VT ++ F + + + D + G + Y+AL+
Sbjct: 254 LFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGF 313
Query: 175 WCLGLRERAARVLDEATKRGL 195
+G + A + DE K GL
Sbjct: 314 CKVGKIQEAKQTFDEVKKTGL 334
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 5/199 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M E + N +FNA+I+AF + G+ EA K Y EM K DP+ T ++++ +C
Sbjct: 317 LLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 376
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+DE+K F+ + S P+V+ Y L+ + K+ R D+ L EM +
Sbjct: 377 MHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTV 436
Query: 130 VTGQMIKGEFD--DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+I G F D N QM VF ++ +G + YN LL+ L G E+A V
Sbjct: 437 TYTTLIHGFFQARDCDNAQM---VFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 493
Query: 188 DEATKRGLFPELFRHNKLV 206
+ + + P ++ +N ++
Sbjct: 494 EYLQRSKMEPTIYTYNIMI 512
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM + G N ++ V+ + G + A +ME + + N V+
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVI 267
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C D++ F E+++ G+ P+V+ Y L++ RW DA LL +M +I
Sbjct: 268 DSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKI- 326
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E E ++D++ + Y++L+ +C+ R + A
Sbjct: 327 NPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING-FCMHDRLDEAK 385
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ + + FP + +N L+
Sbjct: 386 HMFELMISKDCFPNVVTYNTLI 407
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 98/237 (41%), Gaps = 10/237 (4%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ +M E G ++ +F +I + EA+ M + C PN T V++
Sbjct: 176 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 235
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G +D + +++++ I +V+ Y ++ K DDA L EM N+ +
Sbjct: 236 CKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME-NKGVRPN 294
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+T + + W + + + +NAL++A G A ++ D
Sbjct: 295 VITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYD 354
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLAT 245
E KR + P++F ++ L+ +H + + M+E+ + + P + T
Sbjct: 355 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH---------MFELMISKDCFPNVVT 402
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 7/180 (3%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N ++N +I F + R +E ++ + EM + N T ++ + A D ++ F
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 458
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+++ S G+ P++M Y LL K+ + + A + + + +++ MI+G
Sbjct: 459 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 518
Query: 142 ---ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
E W + F L+ +G + YN ++ GL+E A + + + G P+
Sbjct: 519 GKVEDGWDL----FCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPD 574
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 56/128 (43%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ MS+ G+ N+ ++ +I F Q + A + +M PN T +L C
Sbjct: 422 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC 481
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++++ F+ ++ S + P++ Y +++ K+ + +D + L + +
Sbjct: 482 KNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVI 541
Query: 130 VTGQMIKG 137
+ MI G
Sbjct: 542 IYNTMISG 549
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
FN ++ A + +F+ I +M+++ N T +++ +C + + ++
Sbjct: 88 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 147
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G PS++ LL Y R DA L+D+M
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +F+A+I+AF + G+ EA K Y EM K DP+ T
Sbjct: 304 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+K F+ + S P+V+ Y L+ + K+ R ++ L EM
Sbjct: 364 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQ 423
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F + M + +F K+ +G + Y+ LL+ L G E
Sbjct: 424 RGLVGNTVTYNTLIQGLF-QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 482
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V + K + P+++ +N ++
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMI 507
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM G + ++ V+ + G + A+ +MEK + + + ++
Sbjct: 203 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTII 262
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C V+++ F E+ + GI P+V+ Y L+ RW DA LL +M +I
Sbjct: 263 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI- 321
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E E ++D++ + Y++L+ +C+ R + A
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING-FCMHDRLDEAK 380
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ + + FP + +N L+
Sbjct: 381 HMFELMISKDCFPNVVTYNTLI 402
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/250 (20%), Positives = 99/250 (39%), Gaps = 20/250 (8%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E A++ +M N+ +FN +I + EA+ M C P+ T
Sbjct: 163 GKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFT 222
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ C G +D + ++++ I V+ Y ++ +DA L EM
Sbjct: 223 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMD 282
Query: 121 TNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
I +I+ G + D S + + + K+N + ++AL++A
Sbjct: 283 NKGIRPNVVTYNSLIRCLCNYGRWSDASRL-LSDMIERKINP-----NVVTFSALIDAFV 336
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFM 235
G A ++ DE KR + P++F ++ L+ +H + + M+E+ +
Sbjct: 337 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH---------MFELMI 387
Query: 236 MGEDLPQLAT 245
+ P + T
Sbjct: 388 SKDCFPNVVT 397
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 83/201 (41%), Gaps = 7/201 (3%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L +M + G + + ++++ + G R EA+ +M + PN T ++
Sbjct: 136 AVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGL 195
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
E+ + + G P + Y ++ K D A LL +M +I
Sbjct: 196 FLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADV 255
Query: 129 QVTGQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +I D N++ V +F +++ +G + YN+L+ L G A+R
Sbjct: 256 VIYTTII----DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 311
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+L + +R + P + + L+
Sbjct: 312 LLSDMIERKINPNVVTFSALI 332
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 82/185 (44%), Gaps = 1/185 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + MS+ G+ N+ ++N +I+ Q G + A K + +M P+ T +
Sbjct: 412 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L C G ++++ F+ ++ S + P + Y +++ K+ + +D + L + +
Sbjct: 472 LDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 531
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ MI G F + + + +F ++ +G YN L+ A G + +A
Sbjct: 532 KPNVIIYTTMISG-FCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 590
Query: 185 RVLDE 189
++ E
Sbjct: 591 ELIKE 595
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +IE + G+ E+ + + PN ++S +C GL +E+ F+E+
Sbjct: 502 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
K G LP+ Y L+ + + L+ EM +
Sbjct: 562 KEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS 598
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 34/167 (20%)
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS------NI 127
+D++ + F E+ S LPS++ + LL+ AK N++D L + M RIS NI
Sbjct: 61 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 128 --------------HQVTGQMIKGEFDDE------------SNWQMVEYV--FDKLNCEG 159
V G+M+K ++ + ++ E V D++
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
Y +N L+ L+ A ++D RG P+LF + +V
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVV 227
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +FNA+I+AF + G+F EA K Y +M K DP+ T
Sbjct: 309 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTY 368
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +D++K+ F+ + S P V+ Y L+ + KS R +D L EM
Sbjct: 369 NSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSH 428
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F D + + VF ++ +G + Y+ LL+ L G E
Sbjct: 429 RGLVGDTVTYTTLIQGLFHD-GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 487
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V D K + +++ + ++
Sbjct: 488 KALEVFDYMQKSEIKLDIYIYTTMI 512
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 95/202 (47%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM + G N ++ V+ + G + A+ +ME + + + ++
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTII 267
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C VD++ F+E+++ GI P+V+ Y L++ RW DA LL +M +I
Sbjct: 268 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI- 326
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E + E ++D + + YN+L+ +C+ R ++A
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNG-FCMHDRLDKAK 385
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ + + FP++ +N L+
Sbjct: 386 QMFEFMVSKDCFPDVVTYNTLI 407
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 22/243 (9%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ +M E G ++ +F +I + EA+ M + C PN T V++
Sbjct: 176 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 235
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G D + +++++ I V+ + ++ K DDA L EM T I
Sbjct: 236 CKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 295
Query: 129 QVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+I G + D S + + + K+N + +NAL++A G A
Sbjct: 296 VTYSSLISCLCSYGRWSDASQL-LSDMIEKKINPN-----LVTFNALIDAFVKEGKFVEA 349
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED-LPQ 242
++ D+ KR + P++F +N LV +H + +M+E FM+ +D P
Sbjct: 350 EKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKA---------KQMFE-FMVSKDCFPD 399
Query: 243 LAT 245
+ T
Sbjct: 400 VVT 402
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/154 (18%), Positives = 64/154 (41%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +M GV + +++ +++ G+ E+A++ + M+K + ++
Sbjct: 455 QKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 514
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C AG VD+ + F + G+ P+V+ Y +++ +AY LL +M +
Sbjct: 515 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPN 574
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
+I+ D E + + +C G
Sbjct: 575 SGTYNTLIRAHLRDGDKAASAELIREMRSCRFVG 608
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 4/135 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M +S + + + +IE + G+ ++ + + PN T ++S C
Sbjct: 492 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC 551
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI----S 125
L+ E+ +++K G LP+ Y L+ + + + L+ EM + R S
Sbjct: 552 SKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDAS 611
Query: 126 NIHQVTGQMIKGEFD 140
I V + G D
Sbjct: 612 TIGLVANMLHDGRLD 626
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 41/94 (43%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
FN ++ A + +F+ I +M+++ T +++ +C + + ++
Sbjct: 88 FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 147
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G PS++ LL Y R DA L+D+M
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL++M + N S++ VI+ F + GRF+EA+ + EM + + + +LS+Y
Sbjct: 396 ILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYT 455
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G +E+ + +E+ S GI V+ Y LL Y K ++D+ + EM +
Sbjct: 456 KVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLL 515
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G + ++ +F + G + Y+AL++AL GL A ++DE
Sbjct: 516 TYSTLIDG-YSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDE 574
Query: 190 ATKRGLFPELFRHNKLV 206
TK G+ P + +N ++
Sbjct: 575 MTKEGISPNVVTYNSII 591
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 12/211 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERT 60
GL++E ++ + M E G+ N ++NAVI+A +GG F++ K + EM++ P+ T
Sbjct: 282 GLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRIT 341
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L+V GL + ++ F E+ + I V Y LL K + D A+ +L +M
Sbjct: 342 FNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMP 401
Query: 121 TNRI-----SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
RI S + G G FD+ N +F ++ G L YN LL
Sbjct: 402 VKRIMPNVVSYSTVIDGFAKAGRFDEALN------LFGEMRYLGIALDRVSYNTLLSIYT 455
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+G E A +L E G+ ++ +N L+
Sbjct: 456 KVGRSEEALDILREMASVGIKKDVVTYNALL 486
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 48/278 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAF------------RQGGRF---EEAIKAY 46
GL +++ M++ G++ N ++N++I+AF GG A+ A
Sbjct: 563 GLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSAL 622
Query: 47 VEMEKVR---------CDPNERTLEAVLSVYCFAGLVDES--KEQFQEIKSSGILPSVMC 95
E E R + N RT + C G+ + S E F+++ I P+V+
Sbjct: 623 TETEGNRVIQLFGQLTTESNNRTTKD-----CEEGMQELSCILEVFRKMHQLEIKPNVVT 677
Query: 96 YCMLLAVYAKSNRWDDAYGLLDEMHTNRI--SNIHQVTGQMIKGEFDDESNWQMVEYVFD 153
+ +L ++ N ++DA LL+E+ R+ + ++ V ++ G+ E+ W + +FD
Sbjct: 678 FSAILNACSRCNSFEDASMLLEEL---RLFDNKVYGVVHGLLMGQ--RENVWLQAQSLFD 732
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS---VD 210
K+N FYNAL + LW G + A V E R ++ VWS +D
Sbjct: 733 KVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQVWEN-------VWSDSCLD 785
Query: 211 VHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLATVVV 248
+H M G A + WL + + G +LP++ +++
Sbjct: 786 LHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILT 823
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E IL M+ G+ ++ ++NA++ + + G+++E K + EM++ PN T
Sbjct: 458 GRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTY 517
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ Y GL E+ E F+E KS+G+ V+ Y L+ K+ A L+DEM
Sbjct: 518 STLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTK 577
Query: 122 NRIS 125
IS
Sbjct: 578 EGIS 581
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 2/207 (0%)
Query: 1 GGL-YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER 59
GG+ +K+ M +GV + +FN+++ +GG +E A + EM R + +
Sbjct: 316 GGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVF 375
Query: 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ +L C G +D + E ++ I+P+V+ Y ++ +AK+ R+D+A L EM
Sbjct: 376 SYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEM 435
Query: 120 HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
I+ + +V+ + + + + ++ G + YNALL G
Sbjct: 436 RYLGIA-LDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGK 494
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+ +V E + + P L ++ L+
Sbjct: 495 YDEVKKVFTEMKREHVLPNLLTYSTLI 521
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL-VDESKEQFQE 83
+F+A+I A+ + G EEAI + M++ PN T AV+ G+ + + F E
Sbjct: 270 AFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDE 329
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
++ +G+ P + + LLAV ++ W+ A L DEM RI
Sbjct: 330 MQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRI 370
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 52/109 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G Y E + + + M V N +++ +I+ + +GG ++EA++ + E + +
Sbjct: 493 GKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLY 552
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110
A++ C GLV + E+ GI P+V+ Y ++ + +S D
Sbjct: 553 SALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMD 601
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GGLYKE I +G+ + ++A+I+A + G A+ EM K PN T
Sbjct: 527 GGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVT 586
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ + + +D S + + G LP + + NR +G L
Sbjct: 587 YNSIIDAFGRSATMDRSA----DYSNGGSLP-FSSSALSALTETEGNRVIQLFGQLTTES 641
Query: 121 TNRIS 125
NR +
Sbjct: 642 NNRTT 646
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ + +F+ GYG + ++AL+ A GL E A V + + GL P L +N ++
Sbjct: 251 IAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVI 310
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 5/204 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +FN++I+AF + G+ EA K + EM + DPN T
Sbjct: 289 GRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 348
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+++ F + S LP V+ Y L+ + K+ + D L +M
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408
Query: 122 NRISNIHQVTGQMIKGEF--DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +I G F D N QM VF ++ +G + YN LL+ L G
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQM---VFKQMVSDGVHPNIMTYNTLLDGLCKNGK 465
Query: 180 RERAARVLDEATKRGLFPELFRHN 203
E+A V + K + P+++ +N
Sbjct: 466 LEKAMVVFEYLQKSKMEPDIYTYN 489
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM G + ++ AVI + G + A+ +MEK + + + V+
Sbjct: 188 EAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVI 247
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C VD++ F E+ + GI P V Y L++ RW DA LL +M +I
Sbjct: 248 DSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKI- 306
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E E +FD++ + YN+L+ +C+ R + A
Sbjct: 307 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLING-FCMHDRLDEAQ 365
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ + P++ +N L+
Sbjct: 366 QIFTLMVSKDCLPDVVTYNTLI 387
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 57/112 (50%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +M GV N ++N +++ + G+ E+A+ + ++K + +P+ T +
Sbjct: 435 QMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEG 494
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C AG V++ + F + G+ P V+ Y +++ + K ++AY L +M
Sbjct: 495 MCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKM 546
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 11/217 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E A++ +M E G ++ +F ++ Q + EA+ M C P+ T
Sbjct: 148 GNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVT 207
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AV++ C G D + +++ I V+ Y ++ K DDA L EM
Sbjct: 208 YGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMD 267
Query: 121 TNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
I +I G + D S + + + K+N + +N+L++A
Sbjct: 268 NKGIRPDVFTYSSLISCLCNYGRWSDASRL-LSDMLERKINPN-----VVTFNSLIDAFA 321
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
G A ++ DE +R + P + +N L+ +H
Sbjct: 322 KEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 358
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 90/206 (43%), Gaps = 11/206 (5%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E Q I + M + ++N +I F + + + ++ + +M + N T ++
Sbjct: 363 EAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLI 422
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI- 124
+ A D ++ F+++ S G+ P++M Y LL K+ + + A + + + +++
Sbjct: 423 HGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKME 482
Query: 125 SNIHQVT----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I+ G G+ +D W + F L+ +G + YN ++ GL+
Sbjct: 483 PDIYTYNIMSEGMCKAGKVED--GWDL----FCSLSLKGVKPDVIAYNTMISGFCKKGLK 536
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E A + + + G P+ +N L+
Sbjct: 537 EEAYTLFIKMKEDGPLPDSGTYNTLI 562
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 84/203 (41%), Gaps = 11/203 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
AIL +M + G + + N+++ F G R EA+ +M ++ P+ T ++
Sbjct: 121 AILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGL 180
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
E+ + + G P ++ Y ++ K D A LL++M +I
Sbjct: 181 FQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADV 240
Query: 129 QVTGQMIKG-----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +I DD N +F +++ +G + Y++L+ L G A
Sbjct: 241 VIYSTVIDSLCKYRHVDDALN------LFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDA 294
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+R+L + +R + P + N L+
Sbjct: 295 SRLLSDMLERKINPNVVTFNSLI 317
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 14/157 (8%)
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
+DE+ + F E+ S PS++ + LL+ AK ++D ++M +S+
Sbjct: 46 LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEATK 192
MI S + K+ GYG + N+LL +C G R A ++D+ +
Sbjct: 106 MINC-LCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNG-FCHGNRISEAVALVDQMVE 163
Query: 193 RGLFPE----------LFRHNKLVWSVD-VHRMWEGG 218
G P+ LF+HNK +V V RM G
Sbjct: 164 MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG 200
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 5/207 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +F+A+I+AF + G+ EA K Y EM K DP+ T
Sbjct: 307 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 366
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+K F+ + S P+V+ Y L+ + K+ R ++ L EM
Sbjct: 367 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQ 426
Query: 122 NRISNIHQVTGQMIKGEFD--DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +I G F D N QM VF ++ G + YN LL+ L G
Sbjct: 427 RGLVGNTVTYTTLIHGFFQARDCDNAQM---VFKQMVSVGVHPNILTYNILLDGLCKNGK 483
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
+A V + + + P+++ +N ++
Sbjct: 484 LAKAMVVFEYLQRSTMEPDIYTYNIMI 510
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ +M + G + ++ V+ + G + A+ +MEK + + + ++
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTII 265
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C +D++ F E+ + GI P V Y L++ RW DA LL +M +I
Sbjct: 266 DGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKI- 324
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E E ++D++ + Y++L+ +C+ R + A
Sbjct: 325 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING-FCMHDRLDEAK 383
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ + + FP + ++ L+
Sbjct: 384 HMFELMISKDCFPNVVTYSTLI 405
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 100/242 (41%), Gaps = 20/242 (8%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ +M E G ++ +F +I + EA+ +M + C P+ T V++
Sbjct: 174 ALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGL 233
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G +D + ++++ I V+ Y ++ K DDA L EM I
Sbjct: 234 CKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDV 293
Query: 129 QVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+I G + D S + + + K+N + ++AL++A G A
Sbjct: 294 FTYSSLISCLCNYGRWSDASRL-LSDMIERKINPN-----VVTFSALIDAFVKEGKLVEA 347
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQL 243
++ DE KR + P++F ++ L+ +H + + M+E+ + + P +
Sbjct: 348 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH---------MFELMISKDCFPNV 398
Query: 244 AT 245
T
Sbjct: 399 VT 400
Score = 37.4 bits (85), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +IE + G+ E+ + + + PN ++S +C G +E+ +++
Sbjct: 505 TYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----NRISNIHQVTGQMIKGEFD 140
K G LP+ Y L+ + + + L+ EM + S I VT + G D
Sbjct: 565 KEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLD 624
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV-TG 132
VD++ + F ++ S PS++ + LL+ AK N+++ L ++M T IS H + T
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGIS--HDLYTY 121
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEAT 191
+ F S + V K+ GY + ++LL +C R A ++D+
Sbjct: 122 SIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNG-YCHSKRISDAVALVDQMV 180
Query: 192 KRGLFPELFRHNKLVWSVDVH 212
+ G P+ F L+ + +H
Sbjct: 181 EMGYKPDTFTFTTLIHGLFLH 201
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 36/181 (19%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
FN ++ A + +FE I +M+ + + T ++ +C + + ++
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMM 145
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
G P ++ LL Y S R DA L+D
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVD---------------------------- 177
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
QMVE GY + L+ L+ A ++D+ +RG P+L + +
Sbjct: 178 QMVEM--------GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTV 229
Query: 206 V 206
V
Sbjct: 230 V 230
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +FNA+I+AF + G+F EA K + +M K DP+ T
Sbjct: 234 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY 293
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +D++K+ F+ + S P + Y L+ + KS R +D L EM
Sbjct: 294 NSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSH 353
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F D + + VF ++ +G + Y+ LL+ L G E
Sbjct: 354 RGLVGDTVTYTTLIQGLFHD-GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLE 412
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V D K + +++ + ++
Sbjct: 413 KALEVFDYMQKSEIKLDIYIYTTMI 437
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM + G N ++ V+ + G + A +ME + + + ++
Sbjct: 133 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTII 192
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C VD++ F+E+++ GI P+V+ Y L++ RW DA LL +M +I
Sbjct: 193 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI- 251
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E + E + D + + YN+L+ +C+ R ++A
Sbjct: 252 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLING-FCMHDRLDKAK 310
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
++ + + FP+L +N L+
Sbjct: 311 QMFEFMVSKDCFPDLDTYNTLI 332
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 22/243 (9%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A++ +M E G ++ +F +I + EA+ M + C PN T V++
Sbjct: 101 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 160
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G +D + +++++ I V+ + ++ K DDA L EM T I
Sbjct: 161 CKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 220
Query: 129 QVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+I G + D S + + + K+N + +NAL++A G A
Sbjct: 221 VTYSSLISCLCSYGRWSDASQL-LSDMIEKKINPN-----LVTFNALIDAFVKEGKFVEA 274
Query: 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED-LPQ 242
++ D+ KR + P++F +N L+ +H + +M+E FM+ +D P
Sbjct: 275 EKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKA---------KQMFE-FMVSKDCFPD 324
Query: 243 LAT 245
L T
Sbjct: 325 LDT 327
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/154 (18%), Positives = 64/154 (41%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +M GV + +++ +++ G+ E+A++ + M+K + ++
Sbjct: 380 QKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 439
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C AG VD+ + F + G+ P+V+ Y +++ +AY LL +M +
Sbjct: 440 MCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPD 499
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161
+I+ D E + + +C G
Sbjct: 500 SGTYNTLIRAHLRDGDKAASAELIREMRSCRFVG 533
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
FN ++ A + +F+ I +M+++ N T +++ +C + + ++
Sbjct: 13 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 72
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G PS++ LL Y R DA L+D+M
Sbjct: 73 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 106
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 4/135 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M +S + + + +IE + G+ ++ + + PN T ++S C
Sbjct: 417 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC 476
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI----S 125
L+ E+ +++K G LP Y L+ + + + L+ EM + R S
Sbjct: 477 SKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDAS 536
Query: 126 NIHQVTGQMIKGEFD 140
I V + G D
Sbjct: 537 TIGLVANMLHDGRLD 551
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + + +F+A+I+AF + G+ EA K Y EM K DP+ T
Sbjct: 305 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 364
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+K+ F+ + S P V+ Y L+ + K R ++ + EM
Sbjct: 365 SSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ 424
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I+G F + M + +F ++ +G + YN LL+ L G E
Sbjct: 425 RGLVGNTVTYNILIQGLF-QAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLE 483
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A V + + + P ++ +N ++
Sbjct: 484 KAMVVFEYLQRSKMEPTIYTYNIMI 508
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 95/214 (44%), Gaps = 3/214 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM G + ++ V+ + G + A +ME+ + +P ++
Sbjct: 204 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTII 263
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C +D++ F+E+++ GI P+V+ Y L++ RW DA LL +M +I
Sbjct: 264 DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI- 322
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N T + F E E ++D++ + Y++L+ +C+ R + A
Sbjct: 323 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLING-FCMHDRLDEAK 381
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
++ + + FP++ +N L+ ++ E G
Sbjct: 382 QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEG 415
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 11/212 (5%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ +M +G N+ +FN +I + EA+ M C P+ T V+
Sbjct: 169 EAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVV 228
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ C G D + +++ + P V+ Y ++ K DDA L EM T I
Sbjct: 229 NGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIR 288
Query: 126 NIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I G + D S + + + K+N + + ++AL++A G
Sbjct: 289 PNVVTYSSLISCLCNYGRWSDASRL-LSDMIERKINPDVFT-----FSALIDAFVKEGKL 342
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVH 212
A ++ DE KR + P + ++ L+ +H
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 7/185 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +I+ F + R EE ++ + EM + N T ++ AG D ++E F+E+
Sbjct: 398 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 457
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD--- 141
S G+ P++M Y LL K+ + + A + + + +++ MI+G
Sbjct: 458 VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 517
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
E W + F L+ +G + YN ++ G +E A + E + G P
Sbjct: 518 EDGWDL----FCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 573
Query: 202 HNKLV 206
+N L+
Sbjct: 574 YNTLI 578
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 84/185 (45%), Gaps = 1/185 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
+E + MS+ G+ N+ ++N +I+ Q G + A + + EM PN T +
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
L C G ++++ F+ ++ S + P++ Y +++ K+ + +D + L + +
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV 532
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
MI G F + + + + +F ++ +G YN L+ A G RE +A
Sbjct: 533 KPDVVAYNTMISG-FCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591
Query: 185 RVLDE 189
++ E
Sbjct: 592 ELIKE 596
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 85/203 (41%), Gaps = 11/203 (5%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L +M + G N + ++++ + R EA+ +M PN T ++
Sbjct: 137 AVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGL 196
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
E+ + + G P ++ Y +++ K D A+ LL++M ++
Sbjct: 197 FLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGV 256
Query: 129 QVTGQMIKG-----EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+ +I G DD N +F ++ +G + Y++L+ L G A
Sbjct: 257 LIYNTIIDGLCKYKHMDDALN------LFKEMETKGIRPNVVTYSSLISCLCNYGRWSDA 310
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
+R+L + +R + P++F + L+
Sbjct: 311 SRLLSDMIERKINPDVFTFSALI 333
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/212 (18%), Positives = 91/212 (42%), Gaps = 11/212 (5%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M G+ N +++ +I F + + A+ +M K+ +PN TL ++L+ YC +
Sbjct: 106 QMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNI 127
+ E+ ++ +G P+ + + L+ N+ +A L+D M + ++
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 225
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
V G +G+ D N + +K+ G+ YN +++ L + A +
Sbjct: 226 VVVNGLCKRGDTDLAFN------LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLF 279
Query: 188 DEATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219
E +G+ P + ++ L+ + + W +
Sbjct: 280 KEMETKGIRPNVVTYSSLISCLCNYGRWSDAS 311
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +IE + G+ E+ + + P+ ++S +C G +E+ F+E+
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----NRISNIHQVTGQMIKGEFD 140
K G LP+ CY L+ + + + L+ EM + S I VT + G D
Sbjct: 563 KEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLD 622
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 36/206 (17%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G LY E + + M + G N +N +I F + G + A + M K P+ +T
Sbjct: 905 GRLY-EAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKT 963
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G VDE F+E+K SG+ P V+CY +++ KS+R ++A L +EM
Sbjct: 964 YSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMK 1023
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
T+R G + YN+L+ L G+
Sbjct: 1024 TSR-----------------------------------GITPDLYTYNSLILNLGIAGMV 1048
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E A ++ +E + GL P +F N L+
Sbjct: 1049 EEAGKIYNEIQRAGLEPNVFTFNALI 1074
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 91/210 (43%), Gaps = 2/210 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + RM G + ++++++ + + + EME + PN T +
Sbjct: 206 EAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICI 265
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
V AG ++E+ E + + G P V+ Y +L+ + + D A + ++M T R
Sbjct: 266 RVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGR-H 324
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+VT + F D + V+ + ++ +G+ + + L++AL G A
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 384
Query: 186 VLDEATKRGLFPELFRHNKLVWS-VDVHRM 214
LD +G+ P L +N L+ + VHR+
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICGLLRVHRL 414
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 94/212 (44%), Gaps = 3/212 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + ++ +G + ++N +++A+ + G+ +E + Y EM C+ N T V+S
Sbjct: 805 QDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISG 864
Query: 68 YCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
AG VD++ + + ++ S P+ Y L+ +KS R +A L + M
Sbjct: 865 LVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRP 924
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+ +I G F +F ++ EG ++ Y+ L++ L +G +
Sbjct: 925 NCAIYNILING-FGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHY 983
Query: 187 LDEATKRGLFPELFRHNKLVWSV-DVHRMWEG 217
E + GL P++ +N ++ + HR+ E
Sbjct: 984 FKELKESGLNPDVVCYNLIINGLGKSHRLEEA 1015
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 9/200 (4%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M GV + ++ I+ + + G A++ + +M+ PN A L
Sbjct: 420 LFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 479
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RIS 125
AG E+K+ F +K G++P + Y M++ Y+K D+A LL EM N +
Sbjct: 480 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVI 539
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
++ + + K + DE+ W+M F ++ + YN LL L G + A
Sbjct: 540 VVNSLINTLYKADRVDEA-WKM----FMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIE 594
Query: 186 VLDEATKRGLFPELFRHNKL 205
+ + ++G P N L
Sbjct: 595 LFEGMVQKGCPPNTITFNTL 614
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 63/119 (52%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +E + I + + G+ +S ++N +++ + + G +EAIK EM + C+P+
Sbjct: 481 AGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIV 540
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ ++++ A VDE+ + F +K + P+V+ Y LLA K+ + +A L + M
Sbjct: 541 VNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGM 599
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 16/203 (7%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD----PNERTLEAVLSVY 68
R+ +G+ R+ DS ++ R + A EK D P T ++
Sbjct: 738 RLVANGICRDGDSI--LVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGL 795
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NR 123
A +++ +++ F ++KS+G +P V Y LL Y KS + D+ + L EM T N
Sbjct: 796 LEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANT 855
Query: 124 ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
I++ ++G + G DD ++ +D ++ + Y L++ L G A
Sbjct: 856 ITHNIVISGLVKAGNVDDA-----LDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEA 910
Query: 184 ARVLDEATKRGLFPELFRHNKLV 206
++ + G P +N L+
Sbjct: 911 KQLFEGMLDYGCRPNCAIYNILI 933
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +LS M E+G + N++I + R +EA K ++ M++++ P T
Sbjct: 517 GEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTY 576
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+L+ G + E+ E F+ + G P+ + + L K++ A +L +M
Sbjct: 577 NTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM 634
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M + G N+ +FN + + + A+K +M + C P+ T
Sbjct: 587 GKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTY 646
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
++ G V E+ F ++K + P + C LL K++ +DAY ++
Sbjct: 647 NTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLIEDAYKII 700
Score = 37.4 bits (85), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 45/107 (42%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
RM E + ++N ++ + G+ +EAI+ + M + C PN T + C
Sbjct: 563 RMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKND 622
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
V + + ++ G +P V Y ++ K+ + +A +M
Sbjct: 623 EVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM 669
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 81/203 (39%), Gaps = 22/203 (10%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M + + R+++++ + ++ G ++A A +M R
Sbjct: 132 GKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKM---------REF 182
Query: 62 EAVLSVYCFAGLV---------DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
VL+ Y + GL+ E+ E ++ + G PS+ Y L+ K D
Sbjct: 183 GFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSV 242
Query: 113 YGLLDEMHTNRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
GLL EM T + N++ T + + +++ EG G + Y L+
Sbjct: 243 MGLLKEMETLGLKPNVYTFT--ICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLI 300
Query: 172 EALWCLGLRERAARVLDEATKRG 194
+AL C + A+ + E K G
Sbjct: 301 DAL-CTARKLDCAKEVFEKMKTG 322
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +F+A+I+AF + G+ EA K Y EM K DP+ T
Sbjct: 305 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 364
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C +DE+K F+ + S P+V+ Y L+ + K+ R D+ L EM
Sbjct: 365 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQ 424
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G F + VF ++ +G + Y+ LL+ L G E
Sbjct: 425 RGLVGNTVTYTTLIHGFF-QARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVE 483
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A V + + + P+++ +N ++
Sbjct: 484 TALVVFEYLQRSKMEPDIYTYNIMI 508
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM G + ++ V+ + G + A+ +ME+ + +P ++
Sbjct: 204 EAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTII 263
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C V+++ F E+ + GI P+V+ Y L+ RW DA LL +M +I
Sbjct: 264 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI- 322
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAA 184
N + VT + F E E ++D++ + Y++L+ +C+ R + A
Sbjct: 323 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING-FCMHDRLDEAK 381
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ + + FP + +N L+
Sbjct: 382 HMFELMISKDCFPNVVTYNTLI 403
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 103/250 (41%), Gaps = 20/250 (8%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + +++ +M E G +S +FN +I + R EA+ M C P+ T
Sbjct: 164 GNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVT 223
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V++ C G +D + ++++ I P V+ Y ++ +DA L EM
Sbjct: 224 YGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMD 283
Query: 121 TNRISNIHQVTGQMIK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
I +I+ G + D S + + + K+N + ++AL++A
Sbjct: 284 NKGIRPNVVTYNSLIRCLCNYGRWSDASRL-LSDMIERKINPN-----VVTFSALIDAFV 337
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFM 235
G A ++ DE KR + P++F ++ L+ +H + + M+E+ +
Sbjct: 338 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH---------MFELMI 388
Query: 236 MGEDLPQLAT 245
+ P + T
Sbjct: 389 SKDCFPNVVT 398
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 83/188 (44%), Gaps = 7/188 (3%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N ++N +I+ F + R +E ++ + EM + N T ++ + A D ++ F
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF 454
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+++ S G+LP +M Y +LL + + + A + + + +++ MI+G
Sbjct: 455 KQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKA 514
Query: 142 ---ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198
E W + F L+ +G + Y ++ GL+E A + E + G P+
Sbjct: 515 GKVEDGWDL----FCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPD 570
Query: 199 LFRHNKLV 206
+N L+
Sbjct: 571 SGTYNTLI 578
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++N +IE + G+ E+ + + PN T ++S +C GL +E+ F+E+
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREM 562
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI----SNIHQVTGQMIKGEFD 140
K G LP Y L+ + + + L+ EM + R S I VT + G D
Sbjct: 563 KEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNMLHDGRLD 622
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 86/201 (42%), Gaps = 7/201 (3%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+L++M + G + + N+++ F G R +A+ +M ++ P+ T ++
Sbjct: 137 AVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGL 196
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
E+ + G P ++ Y +++ K D A LL +M +I
Sbjct: 197 FRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGV 256
Query: 129 QVTGQMIKGEFDDESNWQMVE---YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
+ +I D N++ V +F +++ +G + YN+L+ L G A+R
Sbjct: 257 VIYNTII----DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 312
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+L + +R + P + + L+
Sbjct: 313 LLSDMIERKINPNVVTFSALI 333
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 6/226 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +F+A+I+AF + G+ +A K Y EM K DPN T
Sbjct: 302 GRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTY 361
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C + E+K+ + + LP+V+ Y L+ + K+ R D L EM
Sbjct: 362 SSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQ 421
Query: 122 NRISNIHQVTGQMIKGEFD--DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
+ +I G F D N QM VF ++ G + YN LL+ L G
Sbjct: 422 RGLVGNTVTYTTLIHGFFQARDCDNAQM---VFKQMVSVGVHPNILTYNILLDGLCKNGK 478
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE-GGAYTAIS 224
+A V + + + P+++ +N ++ + W+ GG Y S
Sbjct: 479 LAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWKMGGIYFVAS 524
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 89/201 (44%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ RM + G + ++ AV+ + G + A+ +ME + + N V+
Sbjct: 201 EAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVI 260
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C D++ F E+++ G+ P+V+ Y L++ RW DA LL +M +I
Sbjct: 261 DSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKI- 319
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
N + VT + F + E +++++ + Y++L+ L A +
Sbjct: 320 NPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQ 379
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+L+ ++ P + +N L+
Sbjct: 380 MLELMIRKDCLPNVVTYNTLI 400
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 87/206 (42%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + A++ +M E G ++ +F +I + EA+ M + C P+ T
Sbjct: 161 GNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVT 220
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
AV++ C G D + +++++ I +V+ Y ++ K DDA L EM
Sbjct: 221 YGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 280
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N+ + +T + + W + + + ++AL++A G
Sbjct: 281 -NKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKL 339
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+A ++ +E KR + P +F ++ L+
Sbjct: 340 VKAEKLYEEMIKRSIDPNIFTYSSLI 365
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 18 GVARNSDSFNAVIE------AFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71
GV S F ++IE A + +F+ I +ME + N T +++ +C
Sbjct: 67 GVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRC 126
Query: 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ + ++ G P ++ LL + NR DA L+D+M
Sbjct: 127 SRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQM 174
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 1/201 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ L M E+G+ N+ ++ A I + + F A K EM + PN+ ++
Sbjct: 505 EARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLI 564
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ YC G V E+ ++ + GIL Y +L+ K+++ DDA + EM I+
Sbjct: 565 NEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIA 624
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G +I G F N Q +FD++ EG + YN LL G E+A
Sbjct: 625 PDVFSYGVLING-FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683
Query: 186 VLDEATKRGLFPELFRHNKLV 206
+LDE + +GL P + ++
Sbjct: 684 LLDEMSVKGLHPNAVTYCTII 704
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%)
Query: 2 GLYK-----ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GL+K + + I M G+A + S+ +I F + G ++A + EM + P
Sbjct: 601 GLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP 660
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
N +L +C +G ++++KE E+ G+ P+ + YC ++ Y KS +A+ L
Sbjct: 661 NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLF 720
Query: 117 DEMHTNRISNIHQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
DEM + V ++ G +D + +F N +G +NAL+ +
Sbjct: 721 DEMKLKGLVPDSFVYTTLVDGCCRLND---VERAITIFGT-NKKGCASSTAPFNALINWV 776
Query: 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234
+ G E VL+ G F + N + +++ + + + G A ++M
Sbjct: 777 FKFGKTELKTEVLNRLMD-GSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNAN 835
Query: 235 MM 236
+M
Sbjct: 836 LM 837
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 10/221 (4%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYV-EMEKVRCDPNERTLEA 63
++ +++L M GV+ ++ +++ +I+ +G R +A K V EM + +
Sbjct: 294 EDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG-RNADAAKGLVHEMVSHGINIKPYMYDC 352
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
+ V G+++++K F + +SG++P Y L+ Y + Y LL EM
Sbjct: 353 CICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRN 412
Query: 124 ISNIHQVTGQMIKG---EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I G ++KG D + + +V+ ++ G + Y L++
Sbjct: 413 IVISPYTYGTVVKGMCSSGDLDGAYNIVK----EMIASGCRPNVVIYTTLIKTFLQNSRF 468
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVD-VHRMWEGGAY 220
A RVL E ++G+ P++F +N L+ + RM E ++
Sbjct: 469 GDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSF 509
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 5/176 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ ++ +A+ M SG+ + ++ ++IE + + + + VEM+K + T
Sbjct: 361 GVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTY 420
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ C +G +D + +E+ +SG P+V+ Y L+ + +++R+ DA +L EM
Sbjct: 421 GTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKE 480
Query: 122 NRIS-NIHQVTGQMI---KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA 173
I+ +I +I K + DE+ +VE V + L + G F + +EA
Sbjct: 481 QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA-FISGYIEA 535
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 15 SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD----PNERTLEAVLSVYCF 70
++ G A ++ FNA+I + G+ E + + D PN+ T ++ C
Sbjct: 758 NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G ++ +KE F +++++ ++P+V+ Y LL Y K R + + + DE I H +
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIM 877
Query: 131 TGQMIKGEFDDESNWQ---MVEYVFDKLNC-EGYGLGMRFYNALLEALWCLGLRERAARV 186
+I + + +V+ +F K +G L + ALL +G E A +V
Sbjct: 878 YSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 937
Query: 187 LDEATKRGLFPE 198
++ + P+
Sbjct: 938 MENMVRLQYIPD 949
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 2/194 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M + V N S+N++I GG+ EAI +M PN T A+++ +C
Sbjct: 318 VFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFC 377
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
++ E+ + F +K G +P+ Y ML+ Y K + DD + L +EM I
Sbjct: 378 KNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVG 437
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G N + + +FD+L +G + F+ L+E G +AA +L E
Sbjct: 438 TYNCLIAG-LCRNGNIEAAKKLFDQLTSKGLPDLVTFH-ILMEGYCRKGESRKAAMLLKE 495
Query: 190 ATKRGLFPELFRHN 203
+K GL P +N
Sbjct: 496 MSKMGLKPRHLTYN 509
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 8/217 (3%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ KE + + G + +N +I+A+ + G+ ++ EME+ P+ T
Sbjct: 381 MLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYN 440
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+++ C G ++ +K+ F ++ S G LP ++ + +L+ Y + A LL EM
Sbjct: 441 CLIAGLCRNGNIEAAKKLFDQLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKM 499
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG-YGLGMRFYNALLEALWCLGLRE 181
+ H ++KG + E N + + ++ E + + YN LL+ G E
Sbjct: 500 GLKPRHLTYNIVMKG-YCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLE 558
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A +L+E ++GL P N++ + + M + G
Sbjct: 559 DANMLLNEMLEKGLVP-----NRITYEIVKEEMVDQG 590
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 61/127 (48%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG E ++ +M +GV N ++NA+I F + +EA+ + ++ P R
Sbjct: 344 GGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRM 403
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ YC G +D+ +E++ GI+P V Y L+A ++ + A L D++
Sbjct: 404 YNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT 463
Query: 121 TNRISNI 127
+ + ++
Sbjct: 464 SKGLPDL 470
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%)
Query: 46 YVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105
Y EM + + PN T V++ C G ++++++ +++K G P+V+ Y L+ Y K
Sbjct: 211 YKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCK 270
Query: 106 ---SNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL 162
+ + A +L EM N +S +I G + D+ N VF ++ +
Sbjct: 271 LGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDD-NLPGSMKVFKEMLDQDVKP 329
Query: 163 GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ YN+L+ L G A + D+ G+ P L +N L+
Sbjct: 330 NVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALI 373
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/239 (18%), Positives = 91/239 (38%), Gaps = 39/239 (16%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + + M + N +FN VI A + G+ +A +M+ C PN + ++
Sbjct: 206 DVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLI 265
Query: 66 SVYCFAG-----------------------------LVD---------ESKEQFQEIKSS 87
YC G L+D S + F+E+
Sbjct: 266 DGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQ 325
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
+ P+V+ Y L+ + +A + D+M + + +I G ++ +
Sbjct: 326 DVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEA 385
Query: 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
++ +F + +G R YN L++A LG + + +E + G+ P++ +N L+
Sbjct: 386 LD-MFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLI 443
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 5/194 (2%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + ++ M + N +F AVI+ F + G+F EA+K Y EM + DP+ T
Sbjct: 222 SGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFT 281
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++++ C G VDE+K+ + + G LP V+ Y L+ + KS R D+ L EM
Sbjct: 282 YNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMA 341
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +I+G F + +F +++ +R Y+ LL L C+ R
Sbjct: 342 QRGLVGDTITYNTIIQGYF-QAGRPDAAQEIFSRMDSRP---NIRTYSILLYGL-CMNWR 396
Query: 181 ERAARVLDEATKRG 194
A VL E ++
Sbjct: 397 VEKALVLFENMQKS 410
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 92/198 (46%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+++ +M + G + + +++I F QG R +AI +ME++ P+ ++
Sbjct: 125 SVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGS 184
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C GLV+++ E F ++ G+ + Y L+A S RW DA L+ +M I +
Sbjct: 185 CKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVP-N 243
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+T + F E + +++++ + YN+L+ L G + A ++LD
Sbjct: 244 VITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLD 303
Query: 189 EATKRGLFPELFRHNKLV 206
+G P++ +N L+
Sbjct: 304 LMVTKGCLPDVVTYNTLI 321
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/204 (18%), Positives = 86/204 (42%), Gaps = 1/204 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M G+ + S+N VI + RF A+ +M K +P+ T+ ++++ +
Sbjct: 90 SLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGF 149
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C V ++ + +++ G P V+ Y ++ K +DA L D M + +
Sbjct: 150 CQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADA 209
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++ G W + + + + A+++ G A ++ +
Sbjct: 210 VTYNSLVAG-LCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYE 268
Query: 189 EATKRGLFPELFRHNKLVWSVDVH 212
E T+R + P++F +N L+ + +H
Sbjct: 269 EMTRRCVDPDVFTYNSLINGLCMH 292
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q I SRM N +++ ++ R E+A+ + M+K + + T V+
Sbjct: 369 QEIFSRMDSRP---NIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHG 425
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
C G V+++ + F+ + G+ P V+ Y +++ + + +WD + L +M
Sbjct: 426 MCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQ 478
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 2/194 (1%)
Query: 14 MSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
M E G+ S N +I+A R G + +K ++EM K CDP+ T ++S C G
Sbjct: 147 MREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFG 206
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
+DE+K+ F E+ P+V+ Y L+ S D+A L+EM + I
Sbjct: 207 RIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYS 266
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
++ G D + Q +E +F+ + G M Y L+ L + A +LD
Sbjct: 267 SLMDGLCKDGRSLQAME-LFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNL 325
Query: 193 RGLFPELFRHNKLV 206
+GL P+ + K++
Sbjct: 326 QGLKPDAGLYGKVI 339
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 8/204 (3%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I M + G +S ++ +I + GR +EA K + EM + C P T ++++ C
Sbjct: 179 IFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLC 238
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+ VDE+ +E+KS GI P+V Y L+ K R A L EM R +
Sbjct: 239 GSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELF-EMMMARGCRPNM 297
Query: 130 VT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT +I G ++ + VE + D++N +G Y ++ + AA LD
Sbjct: 298 VTYTTLITGLCKEQKIQEAVE-LLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLD 356
Query: 189 EATKRGLFPELFRHNKLVWSVDVH 212
E G+ P N+L W++ V
Sbjct: 357 EMILGGITP-----NRLTWNIHVK 375
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 104/247 (42%), Gaps = 19/247 (7%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+K + ++ RM + D ++ + + R ++++ + +M+ CDP+++
Sbjct: 67 FKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVT 126
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-YGLLDEMHTN 122
VL++ ++ + + ++ ++ G+ P+V +L+ +++ DA + EM
Sbjct: 127 VLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKR 186
Query: 123 RISNIHQVTGQMIKG--EFD--DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
G +I G F DE+ E V + +C + Y +L+ L
Sbjct: 187 GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMV--EKDCAPTVVT---YTSLINGLCGSK 241
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238
+ A R L+E +G+ P +F ++ L+ +G S+ +++EM M
Sbjct: 242 NVDEAMRYLEEMKSKGIEPNVFTYSSLM---------DGLCKDGRSLQAMELFEMMMARG 292
Query: 239 DLPQLAT 245
P + T
Sbjct: 293 CRPNMVT 299
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 9/186 (4%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N ++ A G++EE K +M +CDPN T +++ C G ++E+ + +
Sbjct: 300 SYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLM 359
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RISNIHQVTGQMIKGEFD 140
K G+ P Y L+A + + R D A L+ M ++ I N + V + K
Sbjct: 360 KEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKA 419
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
D Q +E +F KL G YN + ALW G + RA ++ E G+ P+
Sbjct: 420 D----QALE-IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEI 474
Query: 201 RHNKLV 206
+N ++
Sbjct: 475 TYNSMI 480
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I ++ E G + NS S+N + A G A+ +EM DP+E T +++S C
Sbjct: 425 IFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLC 484
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
G+VDE+ E +++S PSV+ Y ++L + K++R +DA +L+ M N
Sbjct: 485 REGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGN 537
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 91 PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150
P V Y L+ + K NR DDA +LD M + S VT ++ G +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSP-DTVTYNIMIGSLCSRGKLDLALK 214
Query: 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
V ++L + + Y L+EA G + A +++DE RGL P++F +N ++
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTII 270
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 85/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM + ++ ++N +I + G+ + A+K ++ C P T ++
Sbjct: 180 VLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATM 239
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G VDE+ + E+ S G+ P + Y ++ K D A+ ++ + +
Sbjct: 240 LEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLEL-KGCEPDV 298
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
++ ++ ++ W+ E + K+ E + Y+ L+ L G E A +L
Sbjct: 299 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKL 358
Query: 190 ATKRGLFPELFRHNKLV 206
++GL P+ + ++ L+
Sbjct: 359 MKEKGLTPDAYSYDPLI 375
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 79/185 (42%), Gaps = 1/185 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++ +IEA G +EA+K EM P+ T ++ C G+VD + E + +
Sbjct: 230 TYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNL 289
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+ G P V+ Y +LL +W++ L+ +M + + + + VT ++ +
Sbjct: 290 ELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK-CDPNVVTYSILITTLCRDGK 348
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+ + + +G Y+ L+ A G + A L+ G P++ +N
Sbjct: 349 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNT 408
Query: 205 LVWSV 209
++ ++
Sbjct: 409 VLATL 413
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 12/197 (6%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
++NA+I F + R ++A + M P+ T ++ C G +D + + ++
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S P+V+ Y +L+ D+A L+DEM + + +I+G +
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE--- 276
Query: 145 WQMVEYVFD---KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
MV+ F+ L +G + YN LL AL G E +++ + +F E
Sbjct: 277 -GMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTK-----MFSEKCD 330
Query: 202 HNKLVWSVDVHRMWEGG 218
N + +S+ + + G
Sbjct: 331 PNVVTYSILITTLCRDG 347
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + IL MS +G+ + ++N++I + G +EA + V+M P+ T
Sbjct: 452 GDKIRALHMILEMMS-NGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVT 510
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
VL +C A ++++ + + +G P+ Y +L+
Sbjct: 511 YNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLI 550
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKE 79
++N V+ F + R E+AI M C PNE T ++ FAG E+ E
Sbjct: 510 TYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAME 564
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 5/193 (2%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E A NS S++ +I + GR EEA +M + C P+ RT ++ C GL+D
Sbjct: 259 EVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLID 318
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
++ F E+ G P+V Y +L+ + + ++A G+ +M +RI +I
Sbjct: 319 KAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALI 378
Query: 136 KGEFDDESNWQMVEY--VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
G D E V +K C+ +R +N L+E L +G +A +L
Sbjct: 379 NGYCKDGRVVPAFELLTVMEKRACKP---NVRTFNELMEGLCRVGKPYKAVHLLKRMLDN 435
Query: 194 GLFPELFRHNKLV 206
GL P++ +N L+
Sbjct: 436 GLSPDIVSYNVLI 448
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + +M + + + ++NA+I + + GR A + MEK C PN RT
Sbjct: 350 GKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTF 409
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C G ++ + + +G+ P ++ Y +L+ + + AY LL M+
Sbjct: 410 NELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMN 468
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 55/112 (49%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE A+L ++++ G+ + ++ +++ + G + + M+ C PN
Sbjct: 559 GCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYP 618
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+++ C G V+E+++ ++ SG+ P+ + Y +++ Y + + D A
Sbjct: 619 YTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRA 670
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/257 (19%), Positives = 95/257 (36%), Gaps = 44/257 (17%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
A L M G++ + + +I+ + G+ +A+ + K+R +L +L +
Sbjct: 496 SAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDM 555
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS--------------------- 106
V E +I G++PSV+ Y L+ +S
Sbjct: 556 LSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPN 615
Query: 107 --------------NRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVF 152
R ++A LL M + +S H M+KG ++ + +E V
Sbjct: 616 VYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVR 675
Query: 153 DKLNCEGYGLGMRFYNALLEA--LWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVD 210
+ GY L R Y++LL+ L G+ + + R PE N+L+ V+
Sbjct: 676 AMVE-RGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSDIALRETDPECI--NELISVVE 732
Query: 211 VHRMWEGGAYTAISVWL 227
GG + + ++L
Sbjct: 733 ----QLGGCISGLCIFL 745
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +LS M E + N +FNA+I+AF + G+ EA K + EM + DP+ T
Sbjct: 307 GRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITY 366
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ +C +DE+K+ F+ + S LP++ Y L+ + K R +D L EM
Sbjct: 367 NLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQ 426
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + VT I F + + VF ++ + Y+ LL L G +
Sbjct: 427 RGLVG-NTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLD 485
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + K + +F +N ++
Sbjct: 486 TALVIFKYLQKSEMELNIFIYNTMI 510
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 47/241 (19%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E A++ +M + G + ++ V+ + G + A+ +ME R N ++
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTII 265
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
C V+ + + F E+++ GI P+V+ Y L+ RW DA LL M +I
Sbjct: 266 DSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKI- 324
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
N + VT +NAL++A + G A +
Sbjct: 325 NPNVVT-----------------------------------FNALIDAFFKEGKLVEAEK 349
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED-LPQLA 244
+ +E +R + P+ +N L+ +H + +M++ FM+ +D LP +
Sbjct: 350 LHEEMIQRSIDPDTITYNLLINGFCMHNRLDEA---------KQMFK-FMVSKDCLPNIQ 399
Query: 245 T 245
T
Sbjct: 400 T 400
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV-TG 132
VD++ + F ++ S PS++ + LL+ AK N+++ L ++M T IS H + T
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGIS--HDLYTY 121
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEAT 191
+ F S + V K+ GY + ++LL +C R A ++D+
Sbjct: 122 SIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNG-YCHSKRISDAVALVDQMV 180
Query: 192 KRGLFPELFRHNKLVWSVDVH 212
+ G P+ F L+ + +H
Sbjct: 181 EMGYKPDTFTFTTLIHGLFLH 201
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 49/107 (45%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ MS+ G+ N+ ++ +I+ F Q G + A + +M R + T +L C
Sbjct: 420 LFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLC 479
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
G +D + F+ ++ S + ++ Y ++ K+ + +A+ L
Sbjct: 480 SYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLF 526
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 36/181 (19%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
FN ++ A + +FE I +M+ + + T ++ +C + + ++
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMM 145
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
G P ++ LL Y S R DA L+D
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVD---------------------------- 177
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
QMVE GY + L+ L+ A ++D+ +RG P+L + +
Sbjct: 178 QMVEM--------GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTV 229
Query: 206 V 206
V
Sbjct: 230 V 230
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 93/189 (49%), Gaps = 11/189 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + + N +F A+I+AF + G+ EA + Y M ++ P+ T ++++ C
Sbjct: 245 LLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLC 304
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRI 124
GL+DE+++ F ++ +G P+ + Y L+ + KS R +D + EM N I
Sbjct: 305 MYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTI 364
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + G + G D + + VF++++ +R YN LL+ L C G E+A
Sbjct: 365 TYTVLIQGYCLVGRPD------VAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKAL 418
Query: 185 RVLDEATKR 193
+ + KR
Sbjct: 419 MIFEYMRKR 427
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 93/210 (44%), Gaps = 8/210 (3%)
Query: 5 KECQA--ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+ C+A L +M + G + +F +++ + R E+AI + ++ + PN T
Sbjct: 133 QPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYT 192
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
++ C ++ + E F ++ ++G P+V+ Y L+ + RW DA LL +M
Sbjct: 193 TLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKR 252
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
RI + +T + F + +++ + + Y +L+ L GL +
Sbjct: 253 RIEP-NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDE 311
Query: 183 AARVLDEATKRGLFPELFRHNKLVWSVDVH 212
A ++ + G +P N+++++ +H
Sbjct: 312 ARQMFYLMERNGCYP-----NEVIYTTLIH 336
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N ++ +I+ + G+ E+A + + PN T ++S +C GL+ E+ F
Sbjct: 432 NIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLF 491
Query: 82 QEIKSSGILPS 92
+++K G LP+
Sbjct: 492 KKMKEDGFLPN 502
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 34/166 (20%)
Query: 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI------- 127
+++ + F + S LPS++ + LL+V AK NR+D L ++M I +
Sbjct: 65 NDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIV 124
Query: 128 -HQVT------------GQMIKGEFDDE-----------SNWQMVE---YVFDKLNCEGY 160
H V G+M+K F+ + +W +E +FD++ G+
Sbjct: 125 MHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGF 184
Query: 161 GLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ Y L+ L A + ++ G P + +N LV
Sbjct: 185 KPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALV 230
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 108/227 (47%), Gaps = 6/227 (2%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + + M G+A ++ ++N++I+ F + EA + + M C+P+ T ++
Sbjct: 333 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILI 392
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ YC A VD+ F+EI S G++P+ + Y L+ + +S + + A L EM + +
Sbjct: 393 NSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP 452
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
G ++ G D+ + +E +F+K+ LG+ YN ++ + + A
Sbjct: 453 PSVVTYGILLDGLCDNGELNKALE-IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWS 511
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
+ + +G+ P++ +N ++ + + G+ + + KM E
Sbjct: 512 LFCSLSDKGVKPDVVTYNVMIGG-----LCKKGSLSEADMLFRKMKE 553
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 3/199 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ +M E + + ++ VI++ + G F++A+ + EME + T +++ C
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 291
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G D+ + +E+ I+P V+ + L+ V+ K + +A L +EM T I+
Sbjct: 292 NDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTI 351
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLD 188
+I G F E+ +FD + +G + Y+ L+ + +C R + R+
Sbjct: 352 TYNSLIDG-FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINS-YCKAKRVDDGMRLFR 409
Query: 189 EATKRGLFPELFRHNKLVW 207
E + +GL P +N LV
Sbjct: 410 EISSKGLIPNTITYNTLVL 428
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 1/168 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
+F+A+I+ F + G+ EA + Y EM P+ T +++ +C + E+ + F +
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 376
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
S G P ++ Y +L+ Y K+ R DD L E+ + + ++ G F
Sbjct: 377 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLG-FCQSGK 435
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+ +F ++ G + Y LL+ L G +A + ++ K
Sbjct: 436 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQK 483
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 85/208 (40%), Gaps = 3/208 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ RM E G + ++ V+ + G A+ + +ME+ +
Sbjct: 189 GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQY 248
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-H 120
V+ C G D++ F E++ GI V+ Y L+ +WDD +L EM
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 308
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N I ++ VT + F E + +++++ G YN+L++
Sbjct: 309 RNIIPDV--VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCL 366
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWS 208
A ++ D +G P++ ++ L+ S
Sbjct: 367 HEANQMFDLMVSKGCEPDIVTYSILINS 394
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E A++ RM E + + + +I GR EA+ M + P+E T
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 213
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
VL+ C +G + + F++++ I SV+ Y +++ K +DDA L +EM
Sbjct: 214 GPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEM 273
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
I VT + G ++ W + ++ + ++AL++ G
Sbjct: 274 KGI-KADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLL 332
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + +E RG+ P+ +N L+
Sbjct: 333 EAKELYNEMITRGIAPDTITYNSLI 357
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/119 (18%), Positives = 48/119 (40%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + M GV + ++ +++ G +A++ + +M+K R
Sbjct: 434 GKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIY 493
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C A VD++ F + G+ P V+ Y +++ K +A L +M
Sbjct: 494 NIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK 552
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 7/207 (3%)
Query: 25 SFNAVIEA-FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE 83
S+NAV++A R A + EM + + PN T ++ +CFAG +D + F +
Sbjct: 171 SYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDK 230
Query: 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143
+++ G LP+V+ Y L+ Y K + DD + LL M + + ++ ++ E
Sbjct: 231 METKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEP-NLISYNVVINGLCREG 289
Query: 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203
+ V +V ++N GY L YN L++ G +A + E + GL P + +
Sbjct: 290 RMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYT 349
Query: 204 KLVWSVDVHRMWEGGAYTAISVWLNKM 230
L +H M + G +L++M
Sbjct: 350 SL-----IHSMCKAGNMNRAMEFLDQM 371
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 94/196 (47%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L +M G+ N ++ +++ F Q G EA + EM P+ T A+++ +C
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCV 427
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G ++++ +++K G+ P V+ Y +L+ + +S D+A + EM I
Sbjct: 428 TGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTIT 487
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
+I+G F ++ + +++++ G Y AL+ A G E+A ++ +E
Sbjct: 488 YSSLIQG-FCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEM 546
Query: 191 TKRGLFPELFRHNKLV 206
++G+ P++ ++ L+
Sbjct: 547 VEKGVLPDVVTYSVLI 562
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 3/200 (1%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M ES V+ N ++N +I F G + A+ + +ME C PN T ++
Sbjct: 190 ENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDG 249
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
YC +D+ + + + G+ P+++ Y +++ + R + +L EM+ R ++
Sbjct: 250 YCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMN-RRGYSL 308
Query: 128 HQVT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
+VT +IKG + E N+ + ++ G + Y +L+ ++ G RA
Sbjct: 309 DEVTYNTLIKG-YCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF 367
Query: 187 LDEATKRGLFPELFRHNKLV 206
LD+ RGL P + LV
Sbjct: 368 LDQMRVRGLCPNERTYTTLV 387
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 100/215 (46%), Gaps = 21/215 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE +L+ M+ G + + ++N +I+ + + G F +A+ + EM + P+ T
Sbjct: 289 GRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITY 348
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ C AG ++ + E +++ G+ P+ Y L+ +++ ++AY +L EM+
Sbjct: 349 TSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMND 408
Query: 122 NRIS----------NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
N S N H VTG+M E ++E + +K G + Y+ +L
Sbjct: 409 NGFSPSVVTYNALINGHCVTGKM-------EDAIAVLEDMKEK----GLSPDVVSYSTVL 457
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ A RV E ++G+ P+ ++ L+
Sbjct: 458 SGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 59/103 (57%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G+ ++ +++++I+ F + R +EA Y EM +V P+E T A+++ YC G
Sbjct: 476 MVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGD 535
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
++++ + E+ G+LP V+ Y +L+ K +R +A LL
Sbjct: 536 LEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M+++G + + ++NA+I G+ E+AI +M++ P+ +
Sbjct: 394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSY 453
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
VLS +C + VDE+ +E+ GI P + Y L+ + + R +A L +EM
Sbjct: 454 STVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEM 511
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR-WDDA 112
C + V+ Y L+D++ ++ G +P V+ Y +L +S R A
Sbjct: 130 CYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFA 189
Query: 113 YGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172
+ EM +++S +I+G F N + +FDK+ +G + YN L++
Sbjct: 190 ENVFKEMLESQVSPNVFTYNILIRG-FCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248
Query: 173 ALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L + ++L +GL P L +N ++
Sbjct: 249 GYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVI 282
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 93/183 (50%), Gaps = 3/183 (1%)
Query: 28 AVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87
++ + + G+ +EA+ + M+ C+P + A++SV +G D++ + + ++
Sbjct: 81 GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDR 140
Query: 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147
GI P V + + + + K++R A LL+ M +++ ++ V + G F +E N++
Sbjct: 141 GITPDVYSFTIRMKSFCKTSRPHAALRLLNNM-SSQGCEMNVVAYCTVVGGFYEE-NFKA 198
Query: 148 VEY-VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
Y +F K+ G L + +N LL L G + ++LD+ KRG+ P LF +N +
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFI 258
Query: 207 WSV 209
+
Sbjct: 259 QGL 261
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 91/211 (43%), Gaps = 1/211 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
IL M ++GV + ++N+++ + +FE+ ++ Y M + C PN T +L C
Sbjct: 483 ILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLC 542
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+DE+ +E+K+ + P + + L+ + K+ D AY L +M +
Sbjct: 543 RYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSST 602
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
T +I F ++ N M E +F ++ G Y +++ G + L E
Sbjct: 603 PTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLE 662
Query: 190 ATKRGLFPELFRHNKLVWSVDVH-RMWEGGA 219
+ G P L +++ + V R++E
Sbjct: 663 MMENGFIPSLTTLGRVINCLCVEDRVYEAAG 693
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 85/207 (41%), Gaps = 4/207 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + ++ M G + +FN +I + + E A++ M DP+ T
Sbjct: 440 GCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTY 499
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L+ C ++ E ++ + G P++ + +LL + + D+A GLL+EM
Sbjct: 500 NSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKN 559
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL--GMRFYNALLEALWCLGL 179
++ G +I G F + +F K+ E Y + YN ++ A
Sbjct: 560 KSVNPDAVTFGTLIDG-FCKNGDLDGAYTLFRKME-EAYKVSSSTPTYNIIIHAFTEKLN 617
Query: 180 RERAARVLDEATKRGLFPELFRHNKLV 206
A ++ E R L P+ + + +V
Sbjct: 618 VTMAEKLFQEMVDRCLGPDGYTYRLMV 644
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 6/219 (2%)
Query: 1 GGLYKE-----CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD 55
GG Y+E + +M SGV+ +FN ++ + G +E K ++ K
Sbjct: 189 GGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVL 248
Query: 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115
PN T + C G +D + + G P V+ Y L+ K++++ +A
Sbjct: 249 PNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVY 308
Query: 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175
L +M + +I G + Q+ E + G+ Y +L++ L
Sbjct: 309 LGKMVNEGLEPDSYTYNTLIAG-YCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLC 367
Query: 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214
G RA + +EA +G+ P + +N L+ + M
Sbjct: 368 HEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGM 406
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 82/194 (42%), Gaps = 7/194 (3%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
E G + ++N +I + +F+EA +M +P+ T +++ YC G+V
Sbjct: 279 EQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQ 338
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
++ + +G +P Y L+ + A L +E I + +I
Sbjct: 339 LAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI 398
Query: 136 KGEFDDESNWQMV---EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
KG SN M+ + ++++ +G ++ +N L+ L +G A ++
Sbjct: 399 KG----LSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMIS 454
Query: 193 RGLFPELFRHNKLV 206
+G FP++F N L+
Sbjct: 455 KGYFPDIFTFNILI 468
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 85/219 (38%), Gaps = 7/219 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG+ + + I+ +G + ++ ++I+ G A+ + E PN
Sbjct: 334 GGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVIL 393
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ G++ E+ + E+ G++P V + +L+ K DA GL+ M
Sbjct: 394 YNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMI 453
Query: 121 TNRISNIHQVTGQMIKG---EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
+ +I G + E+ ++++ + D G + YN+LL L
Sbjct: 454 SKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLD----NGVDPDVYTYNSLLNGLCKT 509
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
E ++G P LF N L+ S+ +R +
Sbjct: 510 SKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLD 548
>sp|Q9SZ20|PP339_ARATH Pentatricopeptide repeat-containing protein At4g26800
OS=Arabidopsis thaliana GN=At4g26800 PE=2 SV=2
Length = 514
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 1/173 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L M + N +F+A+I+A+ + G+ + Y M ++ DPN T +++ C
Sbjct: 251 LHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCM 310
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
VDE+ + + S G P+V+ Y L + KS+R DD LLD+M ++
Sbjct: 311 HNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVS 370
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183
+IKG F + VF + G +R YN +L L+ G E+A
Sbjct: 371 CNTLIKGYF-QAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKA 422
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 1/194 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L RM + G++ N +++++I + GR +A + EM+ + +PN T A++ Y
Sbjct: 215 VLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYA 274
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + + ++ + I P+V Y L+ NR D+A +LD M ++ +
Sbjct: 275 KRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLM-ISKGCTPNV 333
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
VT + F S + D + G N L++ + G + A V
Sbjct: 334 VTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGY 393
Query: 190 ATKRGLFPELFRHN 203
T GL P + +N
Sbjct: 394 MTSNGLIPNIRSYN 407
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 57/115 (49%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + GVA N+ S N +I+ + Q G+ + A+ + M PN R+ VL+
Sbjct: 355 LLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLF 414
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
G V+++ +F+ ++ + ++ Y +++ K+ +AY L ++ R+
Sbjct: 415 ANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRV 469
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M+ +G+ N S+N V+ G E+A+ + M+K R D + T ++ C
Sbjct: 390 VFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMC 449
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101
A +V E+ + F ++K + P Y +++A
Sbjct: 450 KACMVKEAYDLFYKLKFKRVEPDFKAYTIMIA 481
Score = 38.1 bits (87), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 51/118 (43%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +L M G N +++ + F + R ++ IK +M + N + ++
Sbjct: 316 EAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLI 375
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123
Y AG +D + F + S+G++P++ Y ++LA + + A + M R
Sbjct: 376 KGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTR 433
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G L++E + M +G + + ++NA+++ + + R +EA+K EM P+ T
Sbjct: 292 GSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVT 351
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++S Y G++DE+ E ++ G P V Y LL+ + ++ + + A + +EM
Sbjct: 352 YNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMR 411
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N + T + + + + +FD++N G + +N LL G+
Sbjct: 412 -NAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMD 470
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ V E + G PE N L+
Sbjct: 471 SEVSGVFKEMKRAGFVPERETFNTLI 496
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 1/188 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + ++M+E G + ++ ++ F + G+ E A+ + EM C PN T
Sbjct: 363 GMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTF 422
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A + +Y G E + F EI G+ P ++ + LLAV+ ++ + G+ EM
Sbjct: 423 NAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR 482
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I + +++ V+ ++ G + YN +L AL G+ E
Sbjct: 483 AGFVPERETFNTLISA-YSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWE 541
Query: 182 RAARVLDE 189
++ +VL E
Sbjct: 542 QSEKVLAE 549
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 9/210 (4%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E + M +G ++FN +I A+ + G FE+A+ Y M P+ T
Sbjct: 468 GMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTY 527
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
VL+ G+ ++S++ E++ P+ + YC LL YA + L +E+++
Sbjct: 528 NTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYS 587
Query: 122 NRISNIHQVTGQMI----KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177
I + ++ K + E+ E F +L G+ + N+++
Sbjct: 588 GVIEPRAVLLKTLVLVCSKCDLLPEA-----ERAFSELKERGFSPDITTLNSMVSIYGRR 642
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLVW 207
+ +A VLD +RG P + +N L++
Sbjct: 643 QMVAKANGVLDYMKERGFTPSMATYNSLMY 672
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 100/212 (47%), Gaps = 1/212 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE +L+ M +G + + ++N++I A+ + G +EA++ +M + P+ T +
Sbjct: 331 KEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTL 390
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
LS + AG V+ + F+E++++G P++ + + +Y ++ + + DE++ +
Sbjct: 391 LSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGL 450
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
S VT + F V VF ++ G+ +N L+ A G E+A
Sbjct: 451 SP-DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509
Query: 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
V G+ P+L +N ++ ++ MWE
Sbjct: 510 TVYRRMLDAGVTPDLSTYNTVLAALARGGMWE 541
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 90/194 (46%), Gaps = 2/194 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
+ E G + + S+ ++I AF GR+ EA+ + +ME+ C P T +L+V+ G
Sbjct: 199 LQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGT 258
Query: 74 V-DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
++ +++KS GI P Y L+ + + +A + +EM S +VT
Sbjct: 259 PWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFS-YDKVTY 317
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+ + + V +++ G+ + YN+L+ A G+ + A + ++ +
Sbjct: 318 NALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAE 377
Query: 193 RGLFPELFRHNKLV 206
+G P++F + L+
Sbjct: 378 KGTKPDVFTYTTLL 391
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 95/206 (46%), Gaps = 1/206 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + +++ +M G+A ++ ++N +I ++G +EA + + EM+ ++ T
Sbjct: 257 GTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVT 316
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
A+L VY + E+ + E+ +G PS++ Y L++ YA+ D+A L ++M
Sbjct: 317 YNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQM- 375
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ + T + F+ + +F+++ G + +NA ++ G
Sbjct: 376 AEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKF 435
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
++ DE GL P++ N L+
Sbjct: 436 TEMMKIFDEINVCGLSPDIVTWNTLL 461
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ I S M SG+ + ++N I ++ FEEAI M K C PN+ T ++
Sbjct: 716 RDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSI 775
Query: 65 LSVYCFAGLVDESK 78
+ YC DE+K
Sbjct: 776 VDGYCKLNRKDEAK 789
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 55/114 (48%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ +L M E G + ++N+++ + F ++ + E+ P+ + V+
Sbjct: 647 KANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVI 706
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
YC + ++ F E+++SGI+P V+ Y + YA + +++A G++ M
Sbjct: 707 YAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYM 760
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 38/179 (21%)
Query: 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM 98
EA +A+ E+++ P+ TL +++S+Y +V ++ +K G PS+ Y
Sbjct: 610 LPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNS 669
Query: 99 LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158
L+ ++++S + + +L E+ + KG D ++ V Y
Sbjct: 670 LMYMHSRSADFGKSEEILREI--------------LAKGIKPDIISYNTVIYA------- 708
Query: 159 GYGLGMRFYNALLEALWCLGLRER-AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+C R R A+R+ E G+ P++ +N + S M+E
Sbjct: 709 ----------------YCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFE 751
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 52/116 (44%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
+ + + IL + G+ + S+N VI A+ + R +A + + EM P+ T
Sbjct: 680 FGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNT 739
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ Y + +E+ + + G P+ Y ++ Y K NR D+A ++++
Sbjct: 740 FIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDL 795
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
ILS M G++ + +F+A+I+ + + G+ EA K Y EM + +PN T ++++ C
Sbjct: 241 ILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLC 300
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
GL+DE+K+ + S G P+ + Y L+ Y K+ R DD +L M + +
Sbjct: 301 IHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTF 360
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+ +G + + E V ++ G M +N LL+ L G +A L++
Sbjct: 361 TYNTLYQG-YCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLED 419
Query: 190 ATKRGLFPELFRHNKLV 206
K + +N ++
Sbjct: 420 LQKSKTVVGIITYNIII 436
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 1/196 (0%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
L +M + G + +F +++ F RF EA+ ++ + +PN ++ C
Sbjct: 137 LGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCE 196
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G V+ + + + +K GI P V+ Y L+ S W + +L +M IS +
Sbjct: 197 KGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISP-DVI 255
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
T + + E + ++++ + YN+L+ L GL + A +VL+
Sbjct: 256 TFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVL 315
Query: 191 TKRGLFPELFRHNKLV 206
+G FP +N L+
Sbjct: 316 VSKGFFPNAVTYNTLI 331
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 85/202 (42%), Gaps = 11/202 (5%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M + G+ + ++N++I G + + + +M ++ P+ T A++ VY
Sbjct: 206 VLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYG 265
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRI 124
G + E+K+Q+ E+ + P+++ Y L+ D+A +L+ + + N +
Sbjct: 266 KEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAV 325
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + G DD V ++ +G YN L + G A
Sbjct: 326 TYNTLINGYCKAKRVDDGMKILCV------MSRDGVDGDTFTYNTLYQGYCQAGKFSAAE 379
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+VL G+ P+++ N L+
Sbjct: 380 KVLGRMVSCGVHPDMYTFNILL 401
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 53/120 (44%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + +L RM GV + +FN +++ G+ +A+ +++K + T
Sbjct: 372 AGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIIT 431
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C A V+++ F + G+ P V+ Y ++ + W +A+ L +M
Sbjct: 432 YNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQ 491
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 67/123 (54%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E +L M + G+A N+ ++N++I+ F + R EEAI+ M CDP+ T
Sbjct: 347 GKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTF 406
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC A +D+ E F+E+ G++ + + Y L+ + +S + + A L EM +
Sbjct: 407 NILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVS 466
Query: 122 NRI 124
R+
Sbjct: 467 RRV 469
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 88/205 (42%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + ++ RM E+G N ++ V+ + G+ A++ +ME+ +
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G +D + F E++ G ++ Y L+ + + RWDD LL +M
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+IS + VT ++ F E + + + ++ G YN+L++ E
Sbjct: 327 RKISP-NVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A +++D +G P++ N L+
Sbjct: 386 EAIQMVDLMISKGCDPDIMTFNILI 410
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 1/192 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + +L M + ++ N +F+ +I++F + G+ EA + EM + PN T
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTIT 370
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ +C ++E+ + + S G P +M + +L+ Y K+NR DD L EM
Sbjct: 371 YNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMS 430
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ +++G F ++ + +F ++ + Y LL+ L G
Sbjct: 431 LRGVIANTVTYNTLVQG-FCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGEL 489
Query: 181 ERAARVLDEATK 192
E+A + + K
Sbjct: 490 EKALEIFGKIEK 501
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 85/197 (43%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ + M G + ++N +I F GR+++ K +M K + PN T ++ +
Sbjct: 285 LFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFV 344
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G + E+ + +E+ GI P+ + Y L+ + K NR ++A ++D M +
Sbjct: 345 KEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIM 404
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I G +E +F +++ G YN L++ G E A ++ E
Sbjct: 405 TFNILINGYCKANRIDDGLE-LFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQE 463
Query: 190 ATKRGLFPELFRHNKLV 206
R + P++ + L+
Sbjct: 464 MVSRRVRPDIVSYKILL 480
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 85/210 (40%), Gaps = 6/210 (2%)
Query: 2 GLYKECQA-----ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GL EC+ ++ RM E G + N ++ G+ +A+ M + P
Sbjct: 167 GLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQP 226
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
NE T VL+V C +G + E ++++ I + Y +++ K D+A+ L
Sbjct: 227 NEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLF 286
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+EM +T + G F + W + + + ++ L+++
Sbjct: 287 NEMEIKGFK-ADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVK 345
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G A ++L E +RG+ P +N L+
Sbjct: 346 EGKLREADQLLKEMMQRGIAPNTITYNSLI 375
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 85/200 (42%), Gaps = 1/200 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ + ++ + G ++ FN ++ R EA++ M ++ P TL +++
Sbjct: 144 STMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGL 203
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G V ++ + +G P+ + Y +L V KS + A LL +M I +
Sbjct: 204 CLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIK-LD 262
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
V +I + + +F+++ +G+ + YN L+ G + A++L
Sbjct: 263 AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLR 322
Query: 189 EATKRGLFPELFRHNKLVWS 208
+ KR + P + + L+ S
Sbjct: 323 DMIKRKISPNVVTFSVLIDS 342
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ M + G+ + +N +I AF G + AI+ EM+K+R P RT ++ Y
Sbjct: 540 AVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGY 599
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
+G + S E F ++ G +P+V + L+ + + + A +LDEM +S
Sbjct: 600 AKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANE 659
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
++++G + EY F +L EG + + Y ALL+A G + A V
Sbjct: 660 HTYTKIMQGYASVGDTGKAFEY-FTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTK 718
Query: 189 EATKRGLFPELFRHNKLV 206
E + R + F +N L+
Sbjct: 719 EMSARNIPRNSFVYNILI 736
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 76/197 (38%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M G +FN +I + + E+A++ EM NE T ++ Y
Sbjct: 611 VFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 670
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G ++ E F +++ G+ + Y LL KS R A + EM I
Sbjct: 671 SVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSF 730
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I G W+ + + ++ EG + Y + + A G RA + ++E
Sbjct: 731 VYNILIDGWARRGDVWEAADLI-QQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEE 789
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P + + L+
Sbjct: 790 MEALGVKPNIKTYTTLI 806
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + A+ MS + RNS +N +I+ + + G EA +M+K P+ T
Sbjct: 708 GRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTY 767
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ +S AG ++ + + +E+++ G+ P++ Y L+ +A+++ + A +EM
Sbjct: 768 TSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEM 825
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E ++ +M + GV + ++ + I A + G A + EME + PN +T ++
Sbjct: 747 EAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLI 806
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAKSN 107
+ A L +++ ++E+K+ GI P Y C+L ++ ++++
Sbjct: 807 KGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRAS 849
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 79/194 (40%), Gaps = 3/194 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E GV N +++ +I F + + A + +M K P+ ++S +C G
Sbjct: 510 MKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGN 569
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-NRISNIHQVTG 132
+D + + +E++ P+ + ++ YAKS + + D M + +H G
Sbjct: 570 MDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNG 629
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+I G + + VE + D++ G Y +++ +G +A
Sbjct: 630 -LINGLVEKRQMEKAVE-ILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQN 687
Query: 193 RGLFPELFRHNKLV 206
GL ++F + L+
Sbjct: 688 EGLDVDIFTYEALL 701
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 15/178 (8%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY-----CFAGLVDE 76
N+ + +I A Q E A EME E ++A +++Y + + DE
Sbjct: 413 NASIYGKIIYAHCQTCNMERAEALVREME-------EEGIDAPIAIYHTMMDGYTMVADE 465
Query: 77 SKE--QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134
K F+ +K G P+V+ Y L+ +Y K + A + M + + + M
Sbjct: 466 KKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMM 525
Query: 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
I G F +W VF+ + EG + YN ++ A +G +RA + + E K
Sbjct: 526 ING-FVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQK 582
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 18/174 (10%)
Query: 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81
N D++ AVI AF EK+ P+ ++ Y G + ++E F
Sbjct: 290 NGDNWQAVISAF----------------EKI-SKPSRTEFGLMVKFYGRRGDMHRARETF 332
Query: 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141
+ +++ GI P+ Y L+ YA D+A + +M I + VT +I G F
Sbjct: 333 ERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGI-EMSLVTYSVIVGGFSK 391
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL 195
+ + +Y FD+ L Y ++ A ERA ++ E + G+
Sbjct: 392 AGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGI 445
Score = 37.7 bits (86), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 71/170 (41%), Gaps = 13/170 (7%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70
+R+ G+ + ++ A+++A + GR + A+ EM N ++ +
Sbjct: 682 FTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWAR 741
Query: 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130
G V E+ + Q++K G+ P + Y ++ +K+ + A ++EM + +
Sbjct: 742 RGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKT 801
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNC--EGYGLGMR----FYNALLEAL 174
+IKG W L+C E +G++ Y+ LL +L
Sbjct: 802 YTTLIKG-------WARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSL 844
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 7/199 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++E I R+ E G+ +N++S N +++ + R E+A +++ K PN T
Sbjct: 168 AGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQL-KSHITPNAHT 226
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ +C A V+E+ QE+K G P V+ Y ++ Y + + Y +L EM
Sbjct: 227 FNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEME 286
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N S + +T I + + ++ V ++ G FYN L+ L G
Sbjct: 287 ANG-SPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRL 345
Query: 181 ERAARVLDEATKRGLFPEL 199
E A RV R PEL
Sbjct: 346 EEAERVF-----RVEMPEL 359
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M +G NS ++ ++ + FEEA++ M++ C P+ ++
Sbjct: 281 MLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLA 340
Query: 70 FAGLVDESKEQFQ-EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
AG ++E++ F+ E+ G+ + Y ++A+Y + D A LL EM ++ + N
Sbjct: 341 RAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCN 398
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAY-VEMEKVRCDPNERTLE 62
++E + +RM SG +S +N +I + GR EEA + + VEM ++ N T
Sbjct: 310 FEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYN 369
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++++YC D++ E +E++SS + P V Y LL K + LL EM T
Sbjct: 370 SMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVT 429
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + ++S M++ + + +FNA+I+A + GR EA + Y EM + DP+ T
Sbjct: 235 GRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTY 294
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C +DE++E F + S G P V+ Y +L+ Y KS + + L EM
Sbjct: 295 SLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQ 354
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + VT ++ + + E +F ++ G + YN LL L G E
Sbjct: 355 RGVVR-NTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A +L + K G+ ++ +N ++
Sbjct: 414 KALVILADMQKNGMDADIVTYNIII 438
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + M G + +++ +I + + + E +K + EM + N T ++
Sbjct: 309 EAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILI 368
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
YC AG ++ ++E F+ + G+ P+++ Y +LL + + + A +L +M N +
Sbjct: 369 QGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMD 428
Query: 126 ------NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179
NI + G GE D W ++ LNC+G + Y ++ L+ GL
Sbjct: 429 ADIVTYNI-IIRGMCKAGEVADA--WD----IYCSLNCQGLMPDIWTYTTMMLGLYKKGL 481
Query: 180 RERAARVLDEATKRGLFPE 198
R A + + + G+ P
Sbjct: 482 RREADALFRKMKEDGILPN 500
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 36/194 (18%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M G+ N + N ++ F + + A+ +M K+ +P+ T ++L+ +C
Sbjct: 106 QMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGD 165
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132
V ++ F ++ G P+V+ Y ++ KS + D+A LL+ M
Sbjct: 166 RVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEK----------- 214
Query: 133 QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
+G G + YN+L+ L G A R++ TK
Sbjct: 215 -------------------------DGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTK 249
Query: 193 RGLFPELFRHNKLV 206
R ++P++F N L+
Sbjct: 250 REIYPDVFTFNALI 263
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+ L +M + G + +F +++ F +G R +A+ + +M + PN ++
Sbjct: 137 SFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGL 196
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
C + VD + + ++ GI P V+ Y L++ S RW DA ++ M I
Sbjct: 197 CKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREI 252
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 3/198 (1%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L ++E G + N + +I+ + G E+A + EM K+ NERT +++
Sbjct: 185 LLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLF 244
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIH 128
G+ + E +++++ G+ P++ Y ++ K R DA+ + DEM +S NI
Sbjct: 245 KNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNI- 303
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
VT + G E V D++ +G + YN L++ +G +A +
Sbjct: 304 -VTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCR 362
Query: 189 EATKRGLFPELFRHNKLV 206
+ RGL P L +N LV
Sbjct: 363 DLKSRGLSPSLVTYNILV 380
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 9/226 (3%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K+ + M E GV+ N ++N +I + + EA K +M+ +PN T
Sbjct: 282 GRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITY 341
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G + ++ +++KS G+ PS++ Y +L++ + + A ++ EM
Sbjct: 342 NTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEE 401
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL--GMRFYNALLEALWCLGL 179
I +VT ++ F N M + + +L+ E GL + Y+ L+ G
Sbjct: 402 RGIKP-SKVTYTILIDTFARSDN--MEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458
Query: 180 RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225
A+R+ ++ P +N ++ EG +Y A+ +
Sbjct: 459 MNEASRLFKSMVEKNCEPNEVIYNTMILGY----CKEGSSYRALKL 500
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + + M + G+ N ++ +I + G ++ + Y +M++ PN T
Sbjct: 212 GEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTY 271
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V++ C G ++ + F E++ G+ +++ Y L+ + + ++A ++D+M +
Sbjct: 272 NCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKS 331
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ I N + +T + F + L G + YN L+ G
Sbjct: 332 DGI-NPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTS 390
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
AA+++ E +RG+ P + L+
Sbjct: 391 GAAKMVKEMEERGIKPSKVTYTILI 415
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
++ M E G+ + ++ +I+ F + E+AI+ + ME++ P+ T ++ +C
Sbjct: 395 MVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFC 454
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G ++E+ F+ + P+ + Y ++ Y K A LL EM
Sbjct: 455 IKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEM 504
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 52/106 (49%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G+ + +++ +I F G+ EA + + M + C+PNE ++ YC G
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGS 493
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
+ + +E++ + P+V Y ++ V K + +A L+++M
Sbjct: 494 SYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKM 539
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + M E N +N +I + + G A+K EME+ PN +
Sbjct: 457 GQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASY 516
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSV 93
++ V C E++ +++ SGI PS
Sbjct: 517 RYMIEVLCKERKSKEAERLVEKMIDSGIDPST 548
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280
OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2
Length = 693
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 12/215 (5%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G KE ++L ++ G++++S S ++VI+ F + G+ EEAIK + R PN
Sbjct: 319 AGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKL---IHSFRLRPNIFV 375
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY----GLL 116
+ LS C G + + FQEI G+LP +CY ++ Y R D A+ LL
Sbjct: 376 YSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALL 435
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ ++ T ++ G + E VF + EG L + YN L+
Sbjct: 436 KSGNPPSLT-----TSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGK 490
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDV 211
+ ++DE G+ P++ +N L+ S+ V
Sbjct: 491 THQLNKVFELIDEMRSAGISPDVATYNILIHSMVV 525
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/212 (18%), Positives = 88/212 (41%), Gaps = 1/212 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + +++ M G+ + ++N ++ + + + + + EM P+ T
Sbjct: 457 GSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATY 516
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ G +DE+ E E+ G +PS + + ++ ++K + +A+ L M
Sbjct: 517 NILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMAD 576
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
R+ ++ G + + +F+KL G + YN L+ +G E
Sbjct: 577 LRMKPDVVTCSALLHG-YCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIE 635
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHR 213
+A ++ +RG+ P H+ LV ++ R
Sbjct: 636 KACELIGLMVQRGMLPNESTHHALVLGLEGKR 667
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 1/197 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
+ K+ +L M + G+ + F +++A + G +EA K + +M + + PN R
Sbjct: 180 ANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE-KFPPNLRY 238
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++L +C G + E+KE ++K +G+ P ++ + LL+ YA + + DAY L+++M
Sbjct: 239 FTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMR 298
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+I+ E VF ++ G + Y AL+ G+
Sbjct: 299 KRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMI 358
Query: 181 ERAARVLDEATKRGLFP 197
++ VLD+ K+G+ P
Sbjct: 359 DKGYSVLDDMRKKGVMP 375
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+++ M + G N + + +I+A R R +EA++ +VEME+ C+ + T A++S +
Sbjct: 293 LMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGF 352
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
C G++D+ +++ G++PS + Y ++ + K ++++ L+++M
Sbjct: 353 CKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKM 403
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 83/197 (42%), Gaps = 2/197 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E + +L +M E+G+ + F ++ + G+ +A +M K +PN
Sbjct: 250 GKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCY 309
Query: 62 EAVLSVYCFA-GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C +DE+ F E++ G ++ Y L++ + K D Y +LD+M
Sbjct: 310 TVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMR 369
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+ QVT I + + ++ + +K+ G + YN ++ LG
Sbjct: 370 KKGVMP-SQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEV 428
Query: 181 ERAARVLDEATKRGLFP 197
+ A R+ +E GL P
Sbjct: 429 KEAVRLWNEMEANGLSP 445
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 61/128 (47%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ + ++L M + GV + ++ ++ A + +FEE ++ +M++ C P+
Sbjct: 356 GMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIY 415
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ + C G V E+ + E++++G+ P V + +++ + +A EM +
Sbjct: 416 NVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVS 475
Query: 122 NRISNIHQ 129
I + Q
Sbjct: 476 RGIFSAPQ 483
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 101/205 (49%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E +++ M G + ++N VI + G++E A + + EM + P+ T
Sbjct: 284 GLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTY 343
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++L C G V E+++ F +++S ++P ++C+ +++++ +S D A + +
Sbjct: 344 RSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + + +I+G + + + + +++ +G + + YN +L L +
Sbjct: 404 AGLIPDNVIYTILIQG-YCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLG 462
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++ +E T+R LFP+ + L+
Sbjct: 463 EADKLFNEMTERALFPDSYTLTILI 487
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 13/208 (6%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E + + M+E + +S + +I+ + G + A++ + +M++ R + T +L
Sbjct: 463 EADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLL 522
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
+ G +D +KE + ++ S ILP+ + Y +L+ +A+ + DEM + I
Sbjct: 523 DGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIK 582
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW-------CLG 178
+ MIKG + N E +K+ EG+ YN L+ G
Sbjct: 583 PTVMICNSMIKG-YCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFG 641
Query: 179 LRERAARVLDEATKRGLFPELFRHNKLV 206
L ++ E + GL P++F +N ++
Sbjct: 642 LVKKM-----EEEQGGLVPDVFTYNSIL 664
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/236 (19%), Positives = 98/236 (41%), Gaps = 16/236 (6%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+Y+E +S SGV N + N ++ A + G+ E+ ++++ P+ T
Sbjct: 221 GVYQE-------ISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTY 273
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++S Y GL++E+ E + G P V Y ++ K +++ A + EM
Sbjct: 274 NTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLR 333
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +S T + + E + + E VF + + +++++ G +
Sbjct: 334 SGLSP-DSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLD 392
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMG 237
+A + + GL P+ +++++ + G ISV +N EM G
Sbjct: 393 KALMYFNSVKEAGLIPD-----NVIYTILIQGYCRKG---MISVAMNLRNEMLQQG 440
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 1/218 (0%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G+Y E ++L M E+ +S ++N ++ A+ + G +EA M K PN T
Sbjct: 329 AGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAIT 388
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
V+ Y AG DE+ + F +K +G +P+ Y +L++ K +R ++ +L +M
Sbjct: 389 YTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMK 448
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
+N S ++ T + ++ + V VF ++ G+ +N L+ A G
Sbjct: 449 SNGCSP-NRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSE 507
Query: 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
A+++ E T+ G + +N L+ ++ W G
Sbjct: 508 VDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSG 545
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 37/206 (17%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR-FEEAIKAYVEMEKVRCDPNERT 60
G Y++ + RM E G + ++N +++ F + GR + + + EM +E T
Sbjct: 224 GKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFT 283
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
VLS GL+ E+KE F E+KS G P + Y LL V+ K+ + +A +L EM
Sbjct: 284 CSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME 343
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
N +C + YN L+ A G
Sbjct: 344 EN---------------------------------SCPADSVT---YNELVAAYVRAGFS 367
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+ AA V++ TK+G+ P + ++
Sbjct: 368 KEAAGVIEMMTKKGVMPNAITYTTVI 393
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 91/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + ++S M G S++ +++ + +GG + + +++ + P+ L
Sbjct: 540 GDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLL 599
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L + S+ F K G P ++ + +L+++ ++N +D A G+L+ +
Sbjct: 600 RTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIRE 659
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +S ++ W+ E + L + YN +++ GL +
Sbjct: 660 DGLSPDLVTYNSLMDMYVRRGECWK-AEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQ 718
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A R+L E T+RG+ P +F +N V
Sbjct: 719 EAVRMLSEMTERGIRPCIFTYNTFV 743
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ K + M G + D+FN +I A+ + G +A K Y EM + + T
Sbjct: 470 GMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTY 529
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
A+L+ G + ++KS G P+ Y ++L YAK + + + +
Sbjct: 530 NALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKE 589
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+I + ++ F + E F GY M +N++L + +
Sbjct: 590 GQIFPSWMLLRTLLLANFKCRA-LAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYD 648
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A +L+ + GL P+L +N L+
Sbjct: 649 QAEGILESIREDGLSPDLVTYNSLM 673
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
GL +E +LS M+E G+ ++N + + G F E M K C PNE T
Sbjct: 715 GLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTF 774
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKS 86
+ V+ YC AG E+ + +IK+
Sbjct: 775 KMVVDGYCRAGKYSEAMDFVSKIKT 799
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 58/120 (48%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
+Y + + IL + E G++ + ++N++++ + + G +A + +EK + P+ +
Sbjct: 646 MYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYN 705
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
V+ +C GL+ E+ E+ GI P + Y ++ Y + + +++ M N
Sbjct: 706 TVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKN 765
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 57/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +++ +L M G+ + + + V+ A + G EA + + E++ +P T
Sbjct: 259 GRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVT 318
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A+L V+ AG+ E+ +E++ + + Y L+A Y ++ +A G+++ M
Sbjct: 319 YNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMM 377
Score = 38.5 bits (88), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 57/116 (49%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + IL + +S + + S+N VI+ F + G +EA++ EM + P T +
Sbjct: 684 KAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFV 743
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
S Y G+ E ++ + + + P+ + + M++ Y ++ ++ +A + ++ T
Sbjct: 744 SGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKT 799
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201
ES + + + DK+ + Y L +R Y +L A G E+A + + + G P L
Sbjct: 188 ESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVT 247
Query: 202 HNKLV 206
+N ++
Sbjct: 248 YNVIL 252
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 98/236 (41%), Gaps = 34/236 (14%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ + M G+ ++ ++N++I+ F + GR ++ + + EM+ + C+P+ T A+++
Sbjct: 282 RGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINC 341
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TN 122
+C G + E ++E+K +G+ P+V+ Y L+ + K A +M N
Sbjct: 342 FCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPN 401
Query: 123 RISNIHQVTGQMIKGEFDDE-----------SNWQMVEY------------------VFD 153
+ + G D W +V Y +F
Sbjct: 402 EYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFG 461
Query: 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
K++ G + YNAL+ +RA +L+E RG+ P+L + +W +
Sbjct: 462 KMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGL 517
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
KE + + +M +GV N S+NA+I F + + A++ E++ P+
Sbjct: 454 KEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF 513
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ C ++ +K E+K GI + + Y L+ Y KS + LLDEM I
Sbjct: 514 IWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDI 573
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+I G ++ + V+Y N G + A+++ L E A
Sbjct: 574 EVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAAT 633
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ ++ ++GL P+ + L+
Sbjct: 634 TLFEQMVQKGLVPDRTAYTSLM 655
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 1/181 (0%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
F+A+ G EEAI+ + +M++ R P R+ +L + G D+ K F+++
Sbjct: 195 FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 254
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
+G P+V Y +++ K + A GL +EM + MI G F
Sbjct: 255 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG-FGKVGRL 313
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
F+++ + YNAL+ G E GL P + ++ L
Sbjct: 314 DDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTL 373
Query: 206 V 206
V
Sbjct: 374 V 374
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ +E S+M V + S N ++ F + G+ ++ + + +M P T
Sbjct: 206 GMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTY 265
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G V+ ++ F+E+K G++P + Y ++ + K R DD +EM
Sbjct: 266 NIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK- 324
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +T + F + + ++ G + Y+ L++A G+ +
Sbjct: 325 DMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQ 384
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A + + + GL P + + L+
Sbjct: 385 QAIKFYVDMRRVGLVPNEYTYTSLI 409
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 112/268 (41%), Gaps = 33/268 (12%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSV 67
AI M E G++ +N ++ +EA + + +M+ CDP+ T ++++V
Sbjct: 371 AIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITV 430
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
Y +G V E++ +++ +G P++ ++ Y K+ + DD D++ I+
Sbjct: 431 YACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPD 490
Query: 128 HQVTGQMIKGEFDDESN----------------WQMVEYVFDKLNCE------------- 158
+ G ++ S Q+V+ + ++ NCE
Sbjct: 491 DRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELID 550
Query: 159 --GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
G + + N L++ L ERA +L + ++ L + WS+ + +
Sbjct: 551 SIGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSL 610
Query: 217 GGAYTAISVWLNKMYEMFM-MGEDLPQL 243
G A TA+ VW+N + E + GE+ P L
Sbjct: 611 GAALTALHVWMNDLSEAALESGEEFPPL 638
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 87/202 (43%), Gaps = 1/202 (0%)
Query: 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV 64
++ + + M E G+ ++ +F +I RQ G + A++ + +M C+P+ T+ A+
Sbjct: 192 EKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAM 251
Query: 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ Y AG VD + + ++ + + L+ +Y S +D + +EM +
Sbjct: 252 IDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGV 311
Query: 125 SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ ++I + WQ + ++ L G+ Y AL+ A + A
Sbjct: 312 KPNLVIYNRLIDSMGRAKRPWQ-AKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDAL 370
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
+ E ++GL + +N L+
Sbjct: 371 AIYREMKEKGLSLTVILYNTLL 392
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G Y C I M GV N +N +I++ + R +A Y ++ PN T
Sbjct: 293 SGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWST 352
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
A++ Y A D++ ++E+K G+ +V+ Y LL++ A + D+A+ + +M
Sbjct: 353 YAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDM 411
Score = 37.4 bits (85), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 37/193 (19%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+N ++ FR+ E++ K + EM + P+ T ++S G+ + E F+++
Sbjct: 178 YNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMS 237
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145
S G P + ++ Y ++ D A L D T + W
Sbjct: 238 SFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEK---------------------W 276
Query: 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKL 205
++ F L +R Y CL + E E G+ P L +N+L
Sbjct: 277 RIDAVTFSTL--------IRIYGVSGNYDGCLNIYE-------EMKALGVKPNLVIYNRL 321
Query: 206 VWSVD-VHRMWEG 217
+ S+ R W+
Sbjct: 322 IDSMGRAKRPWQA 334
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + I + +G N ++ A++ A+ + ++A+ Y EM++ +L
Sbjct: 333 QAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLL 392
Query: 66 SVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
S+ VDE+ E FQ++K+ P + L+ VYA S R +A L +M
Sbjct: 393 SMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQM 447
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 104/212 (49%), Gaps = 16/212 (7%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ E A ++RM+E + + +++ +I+ + + AIK + MEK +C PN T
Sbjct: 534 GMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTY 593
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK-SNRWDDAYGLLDEMH 120
++++ +C G ++E F+E++ ++P+V+ Y L+ AK S+ + A + M
Sbjct: 594 TSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMM 653
Query: 121 TNR-ISN-----------IHQVTGQMIKGEFDDESNWQ--MVEYVFDKLNCEGYGLGMRF 166
TN+ + N + + +G+++ E D ++ Q + F ++ +G+
Sbjct: 654 TNKCVPNEVTFNCLLQGFVKKTSGKVL-AEPDGSNHGQSSLFSEFFHRMKSDGWSDHAAA 712
Query: 167 YNALLEALWCLGLRERAARVLDEATKRGLFPE 198
YN+ L L G+ + A D+ K+G P+
Sbjct: 713 YNSALVCLCVHGMVKTACMFQDKMVKKGFSPD 744
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 17/205 (8%)
Query: 10 ILSRMSESGVARNSDSFNAVIEA-FRQGGRFE--EAIKAYVEMEKVRCDPNERTLEAVLS 66
+LS + E G+ + N +I+A +R G + + E+I + + C P+ T +++
Sbjct: 297 LLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIAND---CKPDVATYNILIN 353
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HT 121
C G + + E G++P+ + Y L+ Y KS +D A LL +M
Sbjct: 354 RLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKP 413
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ ++ + G ++ G DD N ++ KL G YN L+ L G
Sbjct: 414 DIVTYGILIHGLVVSGHMDDAVNMKV------KLIDRGVSPDAAIYNMLMSGLCKTGRFL 467
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A + E R + P+ + + L+
Sbjct: 468 PAKLLFSEMLDRNILPDAYVYATLI 492
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 83/240 (34%), Gaps = 34/240 (14%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y +L +M+E G + ++ +I G ++A+ V++ P+
Sbjct: 396 YDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNM 455
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA----------- 112
++S C G +K F E+ ILP Y L+ + +S +D+A
Sbjct: 456 LMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKG 515
Query: 113 -----------------YGLLDEMHT--NRISNIHQVTGQMIKGEFDD----ESNWQMVE 149
G+LDE NR++ H V + D + +
Sbjct: 516 VKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAI 575
Query: 150 YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
+F + + Y +L+ C G + A E R L P + + L+ S+
Sbjct: 576 KIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSL 635
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 5/155 (3%)
Query: 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113
C PN ++ YC G ++ + F+E+K G +P++ + ++ + K + +
Sbjct: 236 CIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASD 295
Query: 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYV--FDKLNCEGYGLGMRFYNALL 171
LL E+ + +I ++ E + +C+ + YN L+
Sbjct: 296 RLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKP---DVATYNILI 352
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
L G +E A LDEA+K+GL P + L+
Sbjct: 353 NRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLI 387
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 61 LEAVLSVYCFAGLVDESKEQFQ---EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117
L VL Y +G + ++ E + E+ S +P V+ LL++ KS R DA + D
Sbjct: 137 LSHVLHAYAESGSLSKAVEIYDYVVELYDS--VPDVIACNSLLSLLVKSRRLGDARKVYD 194
Query: 118 EMHTNRISNIHQVTGQMIKGEFDD---ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
EM S + T ++KG ++ E +++E + K G + FYN ++
Sbjct: 195 EMCDRGDSVDNYSTCILVKGMCNEGKVEVGRKLIEGRWGK----GCIPNIVFYNTIIGGY 250
Query: 175 WCLGLRERAARVLDEATKRGLFPEL 199
LG E A V E +G P L
Sbjct: 251 CKLGDIENAYLVFKELKLKGFMPTL 275
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +++ +L M GV + +N VI+ F + + A+ + M +P+ T
Sbjct: 423 GEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTW 482
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ +C G ++E F+ ++ G LP Y +++ Y RWDD LL +M +
Sbjct: 483 NTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKS 542
Query: 122 NRI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180
I N+ VT + + + +++ G YNAL+ A GL
Sbjct: 543 QGILPNV--VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLS 600
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
E+A T GL P L N L+
Sbjct: 601 EQAVNAFRVMTSDGLKPSLLALNSLI 626
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 91/211 (43%), Gaps = 1/211 (0%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
E +A+ + +SG+ + ++NA+++ + + G ++A EMEK P+E T ++
Sbjct: 322 EAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLI 381
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125
Y AG + ++ +E+++ + P+ + LLA + W + +L EM + +
Sbjct: 382 DAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVK 441
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
Q +I F + FD++ EG +N L++ G A
Sbjct: 442 PDRQFYNVVID-TFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEE 500
Query: 186 VLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216
+ + +RG P +N ++ S W+
Sbjct: 501 MFEAMERRGCLPCATTYNIMINSYGDQERWD 531
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 61/119 (51%)
Query: 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65
+ + +L +M G+ N + +++ + + GRF +AI+ EM+ V P+ A++
Sbjct: 532 DMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALI 591
Query: 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124
+ Y GL +++ F+ + S G+ PS++ L+ + + R +A+ +L M N +
Sbjct: 592 NAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGV 650
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 76/215 (35%), Gaps = 36/215 (16%)
Query: 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86
N +I F + G +A++ + TL +++S +G E++ F+E++
Sbjct: 273 NDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQ 332
Query: 87 SGILPSVMCYCMLLAVYAKS-----------------------------------NRWDD 111
SGI P Y LL Y K+ RW+
Sbjct: 333 SGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWES 392
Query: 112 AYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
A +L EM + V +++ G F D WQ V ++ G +FYN ++
Sbjct: 393 ARIVLKEMEAGDVQPNSFVFSRLLAG-FRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVI 451
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
+ + A D G+ P+ N L+
Sbjct: 452 DTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLI 486
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + + L M G+ +S +NA+I A+ Q G E+A+ A+ M P+
Sbjct: 562 SGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLA 621
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
L ++++ + E+ Q +K +G+ P V+ Y L+ + +++ + +EM
Sbjct: 622 LNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEM 680
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 96/197 (48%), Gaps = 1/197 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+LS M + + N +++A+++AF + G+ EA + + EM ++ DP+ T ++++ C
Sbjct: 247 LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLC 306
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
+DE+ + F + S G L V+ Y L+ + K+ R +D L EM + +
Sbjct: 307 LHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTV 366
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+I+G F + E+ F +++ G + YN LL L G E+A + ++
Sbjct: 367 TYNTLIQGFFQAGDVDKAQEF-FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 425
Query: 190 ATKRGLFPELFRHNKLV 206
KR + ++ + ++
Sbjct: 426 MQKREMDLDIVTYTTVI 442
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 94/199 (47%), Gaps = 3/199 (1%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
+IL +M + G + + +++ F + R +A+ +M ++ P+ A++
Sbjct: 141 SILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSL 200
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C V+++ + F+EI+ GI P+V+ Y L+ S+RW DA LL +M +I+ +
Sbjct: 201 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP-N 259
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVL 187
+T + F + +F+++ + Y++L+ L CL R + A ++
Sbjct: 260 VITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGL-CLHDRIDEANQMF 318
Query: 188 DEATKRGLFPELFRHNKLV 206
D +G ++ +N L+
Sbjct: 319 DLMVSKGCLADVVSYNTLI 337
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
MS+ G+ N+ ++N +I+ F Q G ++A + + +M+ P+ T +L C G
Sbjct: 356 MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 415
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL-----LDEMHTNRISNIH 128
++++ F++++ + ++ Y ++ K+ + ++A+ L L + + ++
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTT 475
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159
++G KG + VE ++ K+ EG
Sbjct: 476 MMSGLCTKGLLHE------VEALYTKMKQEG 500
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 47/101 (46%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + Q S+M G++ + ++N ++ G E+A+ + +M+K D + T
Sbjct: 378 AGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVT 437
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101
V+ C G V+E+ F + G+ P ++ Y +++
Sbjct: 438 YTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMS 478
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 78/186 (41%), Gaps = 11/186 (5%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
FN ++ A + +++ I +ME + + T V++ +C V + ++
Sbjct: 88 FNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKML 147
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNRISNIHQVTGQMIKGE-FD 140
G P + L+ + + NR DA L+D+M + I + + + K + +
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVN 207
Query: 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200
D ++ F ++ +G + Y AL+ L AAR+L + K+ + P +
Sbjct: 208 DAFDF------FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVI 261
Query: 201 RHNKLV 206
++ L+
Sbjct: 262 TYSALL 267
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 11/196 (5%)
Query: 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75
++G N FN ++ F + G +A K + E+ K P + +++ YC G +D
Sbjct: 233 DAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLD 292
Query: 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRISNIHQV 130
E +++ S P V Y L+ K N+ D A+GL DEM N + +
Sbjct: 293 EGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLI 352
Query: 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190
G GE D +++ + K+ +G + YN L+ G A ++D
Sbjct: 353 HGHSRNGEID------LMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGM 406
Query: 191 TKRGLFPELFRHNKLV 206
+RGL P+ + L+
Sbjct: 407 IRRGLRPDKITYTTLI 422
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 36/197 (18%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
I+ M G+ + ++ +I+ F +GG E A++ EM++ + + A++ C
Sbjct: 402 IVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMC 461
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G V +++ +E+ +GI P + Y M++ + K + LL EM +
Sbjct: 462 KEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQS-------- 513
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
+G+ + YN LL L LG + A +LD
Sbjct: 514 ----------------------------DGHVPSVVTYNVLLNGLCKLGQMKNADMLLDA 545
Query: 190 ATKRGLFPELFRHNKLV 206
G+ P+ +N L+
Sbjct: 546 MLNIGVVPDDITYNTLL 562
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
GG + I M ++G+ + F+A++ + GR +A +A EM + P++ T
Sbjct: 428 GGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
++ +C G + +E++S G +PSV+ Y +LL K + +A LLD M
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAM 546
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 83/167 (49%), Gaps = 1/167 (0%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ ++ M + G+ N+ FN++I++ + GR E+ K + M ++ PN T +++
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLING 520
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
YC AG +DE+ + + S G+ P+ + Y L+ Y K +R +DA L EM ++ +S
Sbjct: 521 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 580
Query: 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
+++G F E ++ ++ G + + YN +L L
Sbjct: 581 IITYNIILQGLFQTRRTAAAKE-LYVRITESGTQIELSTYNIILHGL 626
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 1/207 (0%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L+ M ++GV + ++N+++ + G+ +EAI +M +P+ T ++ C
Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLC 312
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129
G E+++ F + G+ P + Y LL YA + +GLLD M N I H
Sbjct: 313 KNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHY 372
Query: 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189
V +I + + VF K+ +G Y A++ L G E A ++
Sbjct: 373 VFSILICA-YAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 431
Query: 190 ATKRGLFPELFRHNKLVWSVDVHRMWE 216
GL P +N L+ + WE
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTCNKWE 458
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 4/200 (2%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---CDPNERTLEAVLS 66
+L RM+E G N S+N +++ R +EA++ M R P+ + V++
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+ G D++ + E+ GILP V+ Y ++A K+ D A +L+ M N +
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264
Query: 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186
++ G + + ++ K+ +G + Y+ L++ L G A ++
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFL-KKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKI 323
Query: 187 LDEATKRGLFPELFRHNKLV 206
D TKRGL PE+ + L+
Sbjct: 324 FDSMTKRGLKPEITTYGTLL 343
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 21/215 (9%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L M +G+ + F+ +I A+ + G+ ++A+ + +M + +PN T
Sbjct: 350 GALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTY 409
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
AV+ + C +G V+++ F+++ G+ P + Y L+ N+W+ A L+ EM
Sbjct: 410 GAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD 469
Query: 120 --------HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171
N I + H G++I+ E +F+ + G + YN L+
Sbjct: 470 RGICLNTIFFNSIIDSHCKEGRVIES-----------EKLFELMVRIGVKPNVITYNTLI 518
Query: 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A ++L GL P ++ L+
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 1/184 (0%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+ VI F + G ++A Y EM P+ T ++++ C A +D++ E +
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144
+G++P M Y +L Y S + +A G L +M ++ + VT ++
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEP-DVVTYSLLMDYLCKNGR 316
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
+FD + G + Y LL+ G +LD + G+ P+ + +
Sbjct: 317 CMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSI 376
Query: 205 LVWS 208
L+ +
Sbjct: 377 LICA 380
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 1/207 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE L +M GV + +++ +++ + GR EA K + M K P T
Sbjct: 280 GQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+L Y G + E + +GI P + +L+ YAK + D A + +M
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQ 399
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ N + VT + G + F+++ EG G YN+L+ L E
Sbjct: 400 QGL-NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 458
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWS 208
RA ++ E RG+ N ++ S
Sbjct: 459 RAEELILEMLDRGICLNTIFFNSIIDS 485
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G E +LS M G+ N+ +++ +I + + R E+A+ + EME P+ T
Sbjct: 524 AGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT 583
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112
+L +KE + I SG + Y ++L K+ DDA
Sbjct: 584 YNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDA 635
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/80 (20%), Positives = 38/80 (47%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
R++ESG ++N ++ + ++A++ + + + RT ++ G
Sbjct: 606 RITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVG 665
Query: 73 LVDESKEQFQEIKSSGILPS 92
DE+K+ F S+G++P+
Sbjct: 666 RNDEAKDLFVAFSSNGLVPN 685
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 46/113 (40%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+ M SGV+ + ++N +++ Q R A + YV + + T +L C
Sbjct: 568 LFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLC 627
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
L D++ + FQ + + + +++ K R D+A L +N
Sbjct: 628 KNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN 680
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 11/210 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E +L+ MS G+ N+ FN +I AF + R EA++ + EM + C P+ T
Sbjct: 438 GKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTF 497
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-- 119
+++S C + + +++ S G++ + + Y L+ + + +A L++EM
Sbjct: 498 NSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF 557
Query: 120 ---HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+ I+ + G GE D + +F+K+ +G+ N L+ L
Sbjct: 558 QGSPLDEITYNSLIKGLCRAGEVDKARS------LFEKMLRDGHAPSNISCNILINGLCR 611
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G+ E A E RG P++ N L+
Sbjct: 612 SGMVEEAVEFQKEMVLRGSTPDIVTFNSLI 641
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 16/205 (7%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M GV N+ ++N +I AF + G +EA K EM +E T +++ C
Sbjct: 516 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLC 575
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM----HTNRIS 125
AG VD+++ F+++ G PS + +L+ +S ++A EM T I
Sbjct: 576 RAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIV 635
Query: 126 NIHQVTGQMIK-GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ + + + G +D +F KL EG +N L+ L G A
Sbjct: 636 TFNSLINGLCRAGRIEDGLT------MFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDAC 689
Query: 185 RVLDEATKRGLFPELFRHNKLVWSV 209
+LDE + G P N WS+
Sbjct: 690 LLLDEGIEDGFVP-----NHRTWSI 709
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 6/199 (3%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L M++ G NS + +I + + R EA++ EM + C P+ T V+
Sbjct: 238 SLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGL 297
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C ++E+ + + G P + Y L+ K R D A L + I +
Sbjct: 298 CKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFN 357
Query: 129 Q-VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVL 187
+ G + G DD + D + G + YN+L+ W GL A VL
Sbjct: 358 TLIHGFVTHGRLDDAK-----AVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412
Query: 188 DEATKRGLFPELFRHNKLV 206
+ +G P ++ + LV
Sbjct: 413 HDMRNKGCKPNVYSYTILV 431
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 93/210 (44%), Gaps = 10/210 (4%)
Query: 2 GLYKECQAILSRMSES-GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G + +A+LS M S G+ + ++N++I + + G A++ +M C PN +
Sbjct: 367 GRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYS 426
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ +C G +DE+ E+ + G+ P+ + + L++ + K +R +A + EM
Sbjct: 427 YTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMP 486
Query: 121 TNRISNIHQVTGQMIKG--EFDD--ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
+I G E D+ + W + + + EG YN L+ A
Sbjct: 487 RKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMI-----SEGVVANTVTYNTLINAFLR 541
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A ++++E +G + +N L+
Sbjct: 542 RGEIKEARKLVNEMVFQGSPLDEITYNSLI 571
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%)
Query: 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84
S+N V+E G + A + +M + P T V+ +C +D + +++
Sbjct: 184 SYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDM 243
Query: 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119
G +P+ + Y L+ +K NR ++A LL+EM
Sbjct: 244 TKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 278
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/210 (18%), Positives = 81/210 (38%), Gaps = 10/210 (4%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G +K + M + +F V++AF + A+ +M K C PN
Sbjct: 195 GNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVI 254
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+ ++ V+E+ + +E+ G +P + ++ K +R ++A +++ M
Sbjct: 255 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML 314
Query: 121 TNRISNIHQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178
+ G ++ G + + + Y K + +N L+ G
Sbjct: 315 IRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPE-------IVIFNTLIHGFVTHG 367
Query: 179 LRERAARVL-DEATKRGLFPELFRHNKLVW 207
+ A VL D T G+ P++ +N L++
Sbjct: 368 RLDDAKAVLSDMVTSYGIVPDVCTYNSLIY 397
Score = 34.3 bits (77), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 43/99 (43%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+ +E M G + +FN++I + GR E+ + + +++ P+ T
Sbjct: 613 GMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTF 672
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100
++S C G V ++ E G +P+ + +LL
Sbjct: 673 NTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILL 711
>sp|Q9SAJ5|PP133_ARATH Pentatricopeptide repeat-containing protein At1g79540
OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1
Length = 780
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 3/209 (1%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G ++ +LS M G++ ++ +NAVI+A G EE +EM + P+ T
Sbjct: 351 AGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACT 410
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ C GLV E++E F EI+ SG PSV + L+ KS +A LL +M
Sbjct: 411 HTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKME 470
Query: 121 TNRISNIHQVTGQMIKGEFDD--ESNWQMVEYV-FDKLNCEGYGLGMRFYNALLEALWCL 177
R +++ FD ES + Y G + YN L+
Sbjct: 471 VGRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRA 530
Query: 178 GLRERAARVLDEATKRGLFPELFRHNKLV 206
G + A ++L+ +GL P+ +N L+
Sbjct: 531 GDIDGALKLLNVLQLKGLSPDSVTYNTLI 559
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 1/210 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
A+ + M + + N +F +++ + GR +A K + +M PN T ++S
Sbjct: 184 AVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGL 243
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C G D++++ F E+++SG P + + LL + K R +A+ LL +
Sbjct: 244 CQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGL 303
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+ +I G F Q E + L + + Y L++ L G E A ++L
Sbjct: 304 RGYSSLIDGLFRARRYTQAFELYANMLK-KNIKPDIILYTILIQGLSKAGKIEDALKLLS 362
Query: 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGG 218
+G+ P+ + +N ++ ++ + E G
Sbjct: 363 SMPSKGISPDTYCYNAVIKALCGRGLLEEG 392
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 6/213 (2%)
Query: 2 GLYK-----ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56
GLYK + Q + M+ G++ N ++ +I Q G ++A K + EM+ P
Sbjct: 207 GLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYP 266
Query: 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116
+ A+L +C G + E+ E + + G + + Y L+ ++ R+ A+ L
Sbjct: 267 DSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELY 326
Query: 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176
M I + +I+G + + + +G YNA+++AL
Sbjct: 327 ANMLKKNIKPDIILYTILIQG-LSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCG 385
Query: 177 LGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209
GL E + E ++ FP+ H L+ S+
Sbjct: 386 RGLLEEGRSLQLEMSETESFPDACTHTILICSM 418
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 104/242 (42%), Gaps = 57/242 (23%)
Query: 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV--- 67
L + GV+ +S F +I A+ + G E+A++++ M++ C P+ T +L V
Sbjct: 115 LEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMR 174
Query: 68 ------------------------YCFAGLVD---------ESKEQFQEIKSSGILPSVM 94
Y F L+D ++++ F ++ GI P+ +
Sbjct: 175 EEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRV 234
Query: 95 CYCMLLAVYAKSNRWDDAYGLLDEMHT----------NRISNIHQVTGQMIKGEFDDESN 144
Y +L++ + DDA L EM T N + + G+M++
Sbjct: 235 TYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEA------- 287
Query: 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204
++++ +F+K +G+ LG+R Y++L++ L+ +A + K+ + P++ +
Sbjct: 288 FELLR-LFEK---DGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTI 343
Query: 205 LV 206
L+
Sbjct: 344 LI 345
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 79 EQFQEIKSSGILPSVMCYCMLLAVYAK---SNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135
+ +E+KS G+ C+C+L++ YAK + + +++G + E + V +++
Sbjct: 113 QTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVM 172
Query: 136 KGEFDDESNWQMVEYVFD---KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192
E E + + V++ K NC + + L++ L+ G A ++ D+ T
Sbjct: 173 MRE---EVFFMLAFAVYNEMLKCNCSP---NLYTFGILMDGLYKKGRTSDAQKMFDDMTG 226
Query: 193 RGLFPELFRHNKLVWSVDVHRMWEGGA 219
RG+ P N++ +++ + + + G+
Sbjct: 227 RGISP-----NRVTYTILISGLCQRGS 248
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 100/234 (42%), Gaps = 37/234 (15%)
Query: 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69
+L M E G+ N ++N +++ F + G+ A + ++EM+K C+ + T V+ +
Sbjct: 217 VLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFG 276
Query: 70 FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM-----HTNRI 124
AG + ++ F E+ G+LPSV Y ++ V K + ++A + +EM N
Sbjct: 277 VAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVT 336
Query: 125 SNIHQVTGQMIKGEFD-DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER- 182
+ + G GEF E Q +E + N + Y + +R+Y+ E LGL E+
Sbjct: 337 TYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM 396
Query: 183 ------------------------------AARVLDEATKRGLFPELFRHNKLV 206
A ++L E +RG P F N+++
Sbjct: 397 GSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVL 450
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 91/206 (44%), Gaps = 6/206 (2%)
Query: 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62
L+ +++ RM + + +F V E + G+ ++A+K ++ M + C + +
Sbjct: 106 LHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFN 165
Query: 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122
+L V C + V+++ E F+ ++ + +V Y ++L + R A +L EM
Sbjct: 166 TILDVLCKSKRVEKAYELFRALRGRFSVDTV-TYNVILNGWCLIKRTPKALEVLKEMVER 224
Query: 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFD--KLNCEGYGLGMRFYNALLEALWCLGLR 180
I+ M+KG F E+ + K +CE + + Y ++ G
Sbjct: 225 GINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCE---IDVVTYTTVVHGFGVAGEI 281
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
+RA V DE + G+ P + +N ++
Sbjct: 282 KRARNVFDEMIREGVLPSVATYNAMI 307
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 2/193 (1%)
Query: 14 MSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73
M E G ++ SFN +++ + R E+A + + + + R + T +L+ +C
Sbjct: 152 MHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL-RGRFSVDTVTYNVILNGWCLIKR 210
Query: 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133
++ E +E+ GI P++ Y +L + ++ + A+ EM R I VT
Sbjct: 211 TPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEM-KKRDCEIDVVTYT 269
Query: 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193
+ F + VFD++ EG + YNA+++ L E A + +E +R
Sbjct: 270 TVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR 329
Query: 194 GLFPELFRHNKLV 206
G P + +N L+
Sbjct: 330 GYEPNVTTYNVLI 342
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 6/198 (3%)
Query: 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT 60
G K + + M GV + ++NA+I+ + E A+ + EM + +PN T
Sbjct: 278 AGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTT 337
Query: 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
++ AG +E Q +++ G P+ Y M++ Y++ + + A GL ++M
Sbjct: 338 YNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMG 397
Query: 121 TNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE----GYGLGMRFYNALLEALWC 176
+ +I G F + + MV V KL E G+ +N +L L
Sbjct: 398 SGDCLPNLDTYNILISGMFVRKRSEDMV--VAGKLLLEMVERGFIPRKFTFNRVLNGLLL 455
Query: 177 LGLRERAARVLDEATKRG 194
G + A +L +K G
Sbjct: 456 TGNQAFAKEILRLQSKSG 473
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 65/119 (54%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + + MS GV N+ ++N +I A+ + G+ +EA K ME DP+ T
Sbjct: 483 GNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTY 542
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120
+++ C A VDE+ F E+ G+ + + Y ++++ +K+ + D+A+GL DEM
Sbjct: 543 TSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMK 601
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 11/176 (6%)
Query: 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63
Y E + L RM E GV ++ S+ +I+ + + G EEA + +VEM PN T
Sbjct: 450 YDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNV 509
Query: 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM---- 119
++ YC G + E+++ ++++G+ P Y L+ ++ D+A L EM
Sbjct: 510 MIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKG 569
Query: 120 -HTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174
N ++ ++G G+ D+ ++D++ +GY + + Y AL+ ++
Sbjct: 570 LDQNSVTYTVMISGLSKAGKSDEAFG------LYDEMKRKGYTIDNKVYTALIGSM 619
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 96/229 (41%), Gaps = 6/229 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G+++E + M + G++ + S + A ++ R + ++ + M +L
Sbjct: 168 GMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYSL 227
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
V+ C G V++SK+ +E GI P Y ++ Y K + G+L M
Sbjct: 228 TIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKK 287
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + ++VT ++ E +FD++ G + Y +L+ G +
Sbjct: 288 DGVV-YNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMK 346
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230
RA + DE T++GL P + + L+ V + G A + +N+M
Sbjct: 347 RAFLLFDELTEKGLSPSSYTYGALIDGV-----CKVGEMGAAEILMNEM 390
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/238 (18%), Positives = 96/238 (40%), Gaps = 12/238 (5%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G ++ + ++ S G+ + ++N +I A+ + F M+K N+ T
Sbjct: 238 GEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTY 297
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ + G + ++++ F E++ GI V Y L++ + A+ L DE+
Sbjct: 298 TLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTE 357
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+S G +I G E + +++ +G + +N L++ G+ +
Sbjct: 358 KGLSPSSYTYGALIDG-VCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVD 416
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVD-----------VHRMWEGGAYTAISVWLN 228
A+ + D ++G ++F N + + + RM EGG + + N
Sbjct: 417 EASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTN 474
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 36/236 (15%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
+ +L M + GV N ++ ++E + G+ +A K + EM + + + +++S
Sbjct: 279 EGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISW 338
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127
C G + + F E+ G+ PS Y L+ K A L++EM + + NI
Sbjct: 339 NCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGV-NI 397
Query: 128 HQVT------GQMIKGEFDDESN-WQMVE---YVFDKLNCE------------------- 158
QV G KG D+ S + ++E + D C
Sbjct: 398 TQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWL 457
Query: 159 ------GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS 208
G L Y L++ G E A R+ E + +G+ P +N ++++
Sbjct: 458 FRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYA 513
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/205 (18%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G K + ++E G++ +S ++ A+I+ + G A EM+ + +
Sbjct: 343 GNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVF 402
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ YC G+VDE+ + ++ G V + + + + R+D+A L M
Sbjct: 403 NTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMME 462
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + V+ + + E N + + +F +++ +G YN ++ A G +
Sbjct: 463 GGVK-LSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIK 521
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
A ++ G+ P+ + + L+
Sbjct: 522 EARKLRANMEANGMDPDSYTYTSLI 546
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G KE + + + M +G+ +S ++ ++I +EA++ + EM D N T
Sbjct: 518 GKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTY 577
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101
++S AG DE+ + E+K G Y L+
Sbjct: 578 TVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALIG 617
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 104/231 (45%), Gaps = 6/231 (2%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G +E + M G++ N ++N +++ + R EA M + +C P+ T
Sbjct: 312 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
+++ YC VD+ + F+ I G++ + + Y +L+ + +S + A L EM +
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVS 431
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ + G ++ G D+ + +E +F+ L LG+ Y ++E + G E
Sbjct: 432 HGVLPDVMTYGILLDGLCDNGKLEKALE-IFEDLQKSKMDLGIVMYTTIIEGMCKGGKVE 490
Query: 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232
A + +G+ P N + ++V + + + G+ + ++ L KM E
Sbjct: 491 DAWNLFCSLPCKGVKP-----NVMTYTVMISGLCKKGSLSEANILLRKMEE 536
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 92/206 (44%), Gaps = 3/206 (1%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G E ++ RM E+G + ++N+++ + G A+ +ME+ + T
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 231
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++ C G +D + F+E+++ GI SV+ Y L+ K+ +W+D LL +M +
Sbjct: 232 STIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 291
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR- 180
I + +T ++ F E Q ++ ++ G + YN L++ +C+ R
Sbjct: 292 REIVP-NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG-YCMQNRL 349
Query: 181 ERAARVLDEATKRGLFPELFRHNKLV 206
A +LD + P++ L+
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLI 375
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 13/204 (6%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++ M G+ + ++N+++ + G++ + +M PN T +L V+
Sbjct: 249 SLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVF 308
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
G + E+ E ++E+ + GI P+++ Y L+ Y NR +A +LD M N+ S
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368
Query: 129 QVTGQMIKGEFDDESNWQMVE------YVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182
+IKG + MV+ VF ++ G Y+ L++ G +
Sbjct: 369 VTFTSLIKG-------YCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKL 421
Query: 183 AARVLDEATKRGLFPELFRHNKLV 206
A + E G+ P++ + L+
Sbjct: 422 AEELFQEMVSHGVLPDVMTYGILL 445
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/198 (18%), Positives = 80/198 (40%), Gaps = 1/198 (0%)
Query: 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68
++L ++ + G ++ +FN +I+ G+ EA+ M + C P+ T ++++
Sbjct: 144 SVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGI 203
Query: 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128
C +G + + ++++ + V Y ++ + D A L EM T I +
Sbjct: 204 CRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSV 263
Query: 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188
+++G W + + + +N LL+ G + A +
Sbjct: 264 VTYNSLVRG-LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 322
Query: 189 EATKRGLFPELFRHNKLV 206
E RG+ P + +N L+
Sbjct: 323 EMITRGISPNIITYNTLM 340
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85
+ +IE +GG+ E+A + + PN T ++S C G + E+ ++++
Sbjct: 476 YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 535
Query: 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----TNRISNIHQVTGQMIKGEFD 140
G P+ Y L+ + + + L++EM + S+I V ++ GE D
Sbjct: 536 EDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGELD 594
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 71 AGLVDESKEQ----FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS- 125
+G+VD K+ FQE+ S LPS++ + + A++ +++ ++ N I+
Sbjct: 62 SGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAH 121
Query: 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185
NI+ T ++ F V K+ GY +N L++ L+ G A
Sbjct: 122 NIY--TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVV 179
Query: 186 VLDEATKRGLFPELFRHNKLVWSV 209
++D + G P++ +N +V +
Sbjct: 180 LVDRMVENGCQPDVVTYNSIVNGI 203
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61
G + + +L M + + N F A+I+ F + G EA Y EM + PN T
Sbjct: 233 GRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTY 292
Query: 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121
++++ +C G + ++K F + S G P V+ Y L+ + KS R +D L EM
Sbjct: 293 NSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTY 352
Query: 122 NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181
+ +I G + + + VF+++ G + YN LL+ L G E
Sbjct: 353 QGLVGDAFTYNTLIHG-YCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIE 411
Query: 182 RAARVLDEATKRGLFPELFRHNKLV 206
+A ++++ K + ++ +N ++
Sbjct: 412 KALVMVEDLQKSEMDVDIITYNIII 436
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 3/207 (1%)
Query: 13 RMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72
+M + G + + +++ F QG RF+EA+ M+ PN V++ C
Sbjct: 139 KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 198
Query: 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVT 131
++ + E F ++ GI + Y L++ + S RW DA LL +M +I N+ T
Sbjct: 199 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 258
Query: 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191
+ F E N ++ ++ + YN+L+ G A + D
Sbjct: 259 ALI--DTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMV 316
Query: 192 KRGLFPELFRHNKLVWSVDVHRMWEGG 218
+G FP++ +N L+ + E G
Sbjct: 317 SKGCFPDVVTYNTLITGFCKSKRVEDG 343
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 10/202 (4%)
Query: 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66
C+ + SR S V F V+ + +F+ I Y +ME + + + ++
Sbjct: 68 CEMLQSRPIPSIV-----DFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIH 122
Query: 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126
+C + + ++ G PS++ LL + + NR+ +A L+D M
Sbjct: 123 CFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVP 182
Query: 127 IHQVTGQMIKG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184
+ +I G + D +N V Y +K +G YN L+ L G AA
Sbjct: 183 NVVIYNTVINGLCKNRDLNNALEVFYCMEK---KGIRADAVTYNTLISGLSNSGRWTDAA 239
Query: 185 RVLDEATKRGLFPELFRHNKLV 206
R+L + KR + P + L+
Sbjct: 240 RLLRDMVKRKIDPNVIFFTALI 261
Score = 37.7 bits (86), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/94 (19%), Positives = 46/94 (48%)
Query: 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67
Q + +RM + GV+ + ++N +++ G+ E+A+ +++K D + T ++
Sbjct: 379 QKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQG 438
Query: 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101
C + E+ F+ + G+ P + Y +++
Sbjct: 439 LCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMIS 472
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,165,881
Number of Sequences: 539616
Number of extensions: 3682267
Number of successful extensions: 11068
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 8151
Number of HSP's gapped (non-prelim): 2142
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)