Query 039342
Match_columns 248
No_of_seqs 313 out of 1570
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 08:45:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.1E-45 2.3E-50 322.3 25.3 237 2-244 521-759 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.1E-45 4.6E-50 320.5 25.3 235 2-242 486-722 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 7.3E-41 1.6E-45 287.8 19.0 216 1-230 272-488 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2.2E-40 4.8E-45 284.8 18.8 173 60-242 261-465 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 7.8E-40 1.7E-44 287.2 22.1 241 1-246 266-596 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 4.3E-39 9.3E-44 282.6 20.5 230 2-245 166-395 (857)
7 PRK11788 tetratricopeptide rep 99.8 6.3E-17 1.4E-21 131.1 24.7 230 2-240 121-354 (389)
8 PRK11788 tetratricopeptide rep 99.8 5.5E-16 1.2E-20 125.6 23.3 223 2-233 49-311 (389)
9 PF13041 PPR_2: PPR repeat fam 99.7 2.4E-16 5.2E-21 88.6 6.7 50 21-70 1-50 (50)
10 PF13041 PPR_2: PPR repeat fam 99.6 7.9E-16 1.7E-20 86.5 6.3 50 56-105 1-50 (50)
11 TIGR02917 PEP_TPR_lipo putativ 99.6 2.3E-13 4.9E-18 121.0 24.3 217 2-231 649-898 (899)
12 TIGR02917 PEP_TPR_lipo putativ 99.6 1.1E-12 2.3E-17 116.7 25.6 86 140-233 714-799 (899)
13 KOG4318 Bicoid mRNA stability 99.6 6.2E-14 1.4E-18 117.2 15.6 217 9-245 11-277 (1088)
14 KOG4422 Uncharacterized conser 99.6 1.1E-12 2.4E-17 102.0 20.1 167 20-190 204-382 (625)
15 KOG4422 Uncharacterized conser 99.5 2E-12 4.4E-17 100.6 18.2 179 24-208 117-321 (625)
16 PF13429 TPR_15: Tetratricopep 99.4 2.7E-12 5.8E-17 99.5 11.7 214 2-230 58-274 (280)
17 PRK15174 Vi polysaccharide exp 99.4 2.7E-10 5.8E-15 98.0 24.6 78 148-232 269-346 (656)
18 TIGR02521 type_IV_pilW type IV 99.4 5E-10 1.1E-14 83.8 23.2 203 22-233 30-232 (234)
19 PRK15174 Vi polysaccharide exp 99.4 5.9E-10 1.3E-14 95.9 24.7 191 33-233 187-381 (656)
20 PF13429 TPR_15: Tetratricopep 99.4 4E-12 8.7E-17 98.5 10.2 227 1-240 21-248 (280)
21 TIGR00990 3a0801s09 mitochondr 99.4 1.1E-09 2.5E-14 94.0 25.7 224 2-233 308-537 (615)
22 TIGR00990 3a0801s09 mitochondr 99.4 1.2E-09 2.6E-14 93.8 25.2 219 2-233 345-571 (615)
23 TIGR00540 hemY_coli hemY prote 99.4 3.3E-09 7.2E-14 86.5 26.3 225 2-234 167-400 (409)
24 PRK10747 putative protoheme IX 99.3 4.5E-09 9.7E-14 85.4 26.2 213 2-230 132-387 (398)
25 TIGR02521 type_IV_pilW type IV 99.3 2E-09 4.3E-14 80.6 22.3 186 1-192 44-231 (234)
26 PRK12370 invasion protein regu 99.2 1.7E-08 3.7E-13 85.5 24.7 218 3-235 276-504 (553)
27 PRK09782 bacteriophage N4 rece 99.2 1.8E-08 3.9E-13 89.6 24.9 182 2-191 523-704 (987)
28 PRK10747 putative protoheme IX 99.2 2.8E-08 6E-13 80.8 23.6 186 1-193 97-292 (398)
29 PF12854 PPR_1: PPR repeat 99.2 3.4E-11 7.3E-16 61.2 3.9 32 18-49 2-33 (34)
30 PRK09782 bacteriophage N4 rece 99.2 3.6E-08 7.8E-13 87.8 25.2 216 2-233 490-706 (987)
31 PF12854 PPR_1: PPR repeat 99.2 3.4E-11 7.4E-16 61.1 3.8 32 53-84 2-33 (34)
32 COG3071 HemY Uncharacterized e 99.2 2.2E-07 4.7E-12 72.3 25.4 135 93-241 263-398 (400)
33 PRK10049 pgaA outer membrane p 99.1 9.7E-08 2.1E-12 84.0 25.0 224 5-239 213-460 (765)
34 PRK12370 invasion protein regu 99.1 5.3E-08 1.1E-12 82.6 22.6 216 2-233 318-535 (553)
35 PRK11447 cellulose synthase su 99.1 5.6E-08 1.2E-12 89.2 24.3 225 2-232 475-739 (1157)
36 COG2956 Predicted N-acetylgluc 99.1 5.9E-08 1.3E-12 73.5 19.6 225 1-233 48-278 (389)
37 PRK11447 cellulose synthase su 99.1 1.4E-07 3E-12 86.6 24.3 117 2-122 365-524 (1157)
38 TIGR00540 hemY_coli hemY prote 99.0 7.6E-07 1.6E-11 72.8 24.6 188 1-193 97-292 (409)
39 PRK10049 pgaA outer membrane p 99.0 2.3E-07 5E-12 81.6 22.6 191 2-199 251-460 (765)
40 KOG1126 DNA-binding cell divis 99.0 1.4E-07 3.1E-12 77.6 18.0 216 4-233 335-586 (638)
41 KOG4626 O-linked N-acetylgluco 99.0 1.8E-06 4E-11 71.2 24.0 230 2-242 300-535 (966)
42 PRK14574 hmsH outer membrane p 98.9 5.9E-07 1.3E-11 78.7 21.9 160 29-189 298-475 (822)
43 KOG4318 Bicoid mRNA stability 98.9 2.9E-08 6.2E-13 84.2 13.3 86 90-179 201-286 (1088)
44 PRK14574 hmsH outer membrane p 98.9 2.2E-06 4.7E-11 75.3 24.9 194 2-200 306-518 (822)
45 COG2956 Predicted N-acetylgluc 98.9 2E-06 4.4E-11 65.4 21.1 186 2-193 83-278 (389)
46 COG3071 HemY Uncharacterized e 98.9 7E-06 1.5E-10 64.2 23.2 194 1-198 97-297 (400)
47 KOG2003 TPR repeat-containing 98.9 2.5E-06 5.5E-11 67.9 21.0 200 1-208 503-703 (840)
48 KOG1126 DNA-binding cell divis 98.9 1.8E-07 3.8E-12 77.1 15.1 195 22-231 420-618 (638)
49 TIGR00756 PPR pentatricopeptid 98.8 1.3E-08 2.8E-13 52.2 4.5 33 25-57 2-34 (35)
50 PRK11189 lipoprotein NlpI; Pro 98.8 5.4E-06 1.2E-10 64.8 20.5 182 2-193 78-265 (296)
51 PF04733 Coatomer_E: Coatomer 98.8 1.5E-07 3.3E-12 72.8 11.4 199 20-233 63-265 (290)
52 PF13812 PPR_3: Pentatricopept 98.8 1.7E-08 3.8E-13 51.4 4.3 33 24-56 2-34 (34)
53 PRK11189 lipoprotein NlpI; Pro 98.7 2.3E-05 5.1E-10 61.2 22.8 220 3-233 41-265 (296)
54 PF13812 PPR_3: Pentatricopept 98.7 2.4E-08 5.3E-13 50.8 4.2 33 165-197 2-34 (34)
55 TIGR00756 PPR pentatricopeptid 98.7 3E-08 6.5E-13 50.8 4.5 34 166-199 2-35 (35)
56 KOG1840 Kinesin light chain [C 98.7 7.4E-06 1.6E-10 67.7 20.4 227 2-233 213-479 (508)
57 KOG4626 O-linked N-acetylgluco 98.7 1.6E-06 3.5E-11 71.5 15.8 223 2-241 232-491 (966)
58 COG3063 PilF Tfp pilus assembl 98.7 2.9E-05 6.3E-10 56.6 20.2 198 25-233 37-236 (250)
59 PF12569 NARP1: NMDA receptor- 98.7 3.3E-05 7.1E-10 64.4 23.4 133 96-231 197-332 (517)
60 COG3063 PilF Tfp pilus assembl 98.7 4.9E-05 1.1E-09 55.4 20.5 197 1-204 48-245 (250)
61 cd05804 StaR_like StaR_like; a 98.6 4.5E-05 9.8E-10 61.2 22.9 207 25-234 116-337 (355)
62 PF08579 RPM2: Mitochondrial r 98.6 1.3E-06 2.8E-11 56.2 10.4 82 25-106 27-117 (120)
63 PF12569 NARP1: NMDA receptor- 98.6 2.2E-05 4.9E-10 65.4 20.6 84 1-87 17-106 (517)
64 KOG2003 TPR repeat-containing 98.6 1.4E-05 2.9E-10 63.9 18.0 172 2-179 538-709 (840)
65 PF10037 MRP-S27: Mitochondria 98.6 1E-06 2.3E-11 71.0 11.0 120 18-137 61-182 (429)
66 KOG1155 Anaphase-promoting com 98.5 9.1E-05 2E-09 59.4 20.7 220 5-234 244-496 (559)
67 KOG1129 TPR repeat-containing 98.5 2.4E-05 5.3E-10 60.0 16.9 159 27-192 227-386 (478)
68 cd05804 StaR_like StaR_like; a 98.5 0.00011 2.3E-09 59.1 22.0 228 2-236 57-296 (355)
69 KOG1155 Anaphase-promoting com 98.5 0.00011 2.3E-09 59.0 20.5 216 2-225 276-528 (559)
70 PF01535 PPR: PPR repeat; Int 98.5 1.8E-07 4E-12 46.4 3.4 29 25-53 2-30 (31)
71 KOG1840 Kinesin light chain [C 98.5 4.8E-05 1E-09 63.0 18.9 211 23-234 199-439 (508)
72 KOG2076 RNA polymerase III tra 98.5 0.00017 3.6E-09 62.1 22.2 187 2-192 153-344 (895)
73 PF01535 PPR: PPR repeat; Int 98.5 2.6E-07 5.6E-12 45.8 3.6 29 95-123 2-30 (31)
74 PF10037 MRP-S27: Mitochondria 98.5 2.5E-06 5.3E-11 68.9 10.7 104 3-106 81-186 (429)
75 PF06239 ECSIT: Evolutionarily 98.5 8.8E-06 1.9E-10 58.9 12.3 89 20-108 44-153 (228)
76 TIGR03302 OM_YfiO outer membra 98.4 7.7E-05 1.7E-09 56.3 18.2 182 22-234 32-233 (235)
77 KOG1129 TPR repeat-containing 98.4 5.2E-05 1.1E-09 58.2 16.6 219 2-233 237-458 (478)
78 KOG1070 rRNA processing protei 98.4 6.1E-05 1.3E-09 67.6 19.1 193 2-199 1472-1669(1710)
79 PF04733 Coatomer_E: Coatomer 98.4 2.2E-05 4.8E-10 60.9 14.6 154 31-198 110-268 (290)
80 KOG3081 Vesicle coat complex C 98.4 6.3E-05 1.4E-09 56.0 15.6 172 47-233 97-271 (299)
81 KOG0547 Translocase of outer m 98.4 7E-05 1.5E-09 60.4 16.9 184 2-190 340-563 (606)
82 PRK15359 type III secretion sy 98.4 8.7E-05 1.9E-09 51.4 15.3 116 9-132 14-129 (144)
83 PRK15179 Vi polysaccharide bio 98.3 0.00014 3.1E-09 62.9 19.2 136 53-193 81-217 (694)
84 KOG0495 HAT repeat protein [RN 98.3 0.00078 1.7E-08 56.6 21.2 213 2-227 564-776 (913)
85 KOG0547 Translocase of outer m 98.3 0.0002 4.3E-09 57.9 17.3 155 33-192 336-490 (606)
86 PF08579 RPM2: Mitochondrial r 98.3 1.9E-05 4.2E-10 50.9 9.5 43 63-105 30-73 (120)
87 TIGR03302 OM_YfiO outer membra 98.3 0.00023 5.1E-09 53.6 17.0 103 55-159 30-145 (235)
88 COG5010 TadD Flp pilus assembl 98.2 0.00017 3.6E-09 53.6 15.1 159 27-190 70-228 (257)
89 PF06239 ECSIT: Evolutionarily 98.2 2.1E-05 4.5E-10 57.0 10.1 118 54-191 43-166 (228)
90 KOG2002 TPR-containing nuclear 98.2 0.00013 2.8E-09 63.3 16.3 230 2-244 510-754 (1018)
91 KOG0495 HAT repeat protein [RN 98.2 0.00087 1.9E-08 56.3 20.3 185 1-193 597-782 (913)
92 KOG2076 RNA polymerase III tra 98.2 0.0016 3.4E-08 56.5 22.3 119 2-121 221-344 (895)
93 PRK10370 formate-dependent nit 98.2 0.00028 6.1E-09 51.7 15.8 119 36-158 52-173 (198)
94 TIGR02552 LcrH_SycD type III s 98.1 0.00027 5.8E-09 48.3 13.9 105 22-130 16-120 (135)
95 PRK10370 formate-dependent nit 98.1 0.0012 2.7E-08 48.3 17.9 157 29-202 22-181 (198)
96 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00015 3.1E-09 58.5 13.8 112 2-120 183-295 (395)
97 KOG4340 Uncharacterized conser 98.1 0.00029 6.3E-09 53.6 14.3 206 17-238 4-212 (459)
98 PF09976 TPR_21: Tetratricopep 98.1 0.00028 6.1E-09 49.0 12.7 126 24-154 13-143 (145)
99 KOG1128 Uncharacterized conser 98.0 0.00048 1E-08 58.2 15.6 196 24-238 425-621 (777)
100 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00026 5.7E-09 57.0 13.8 125 60-191 171-295 (395)
101 KOG1070 rRNA processing protei 98.0 0.002 4.3E-08 58.5 19.5 204 22-237 1457-1667(1710)
102 KOG3081 Vesicle coat complex C 98.0 0.00065 1.4E-08 50.8 14.0 174 8-193 93-271 (299)
103 COG5010 TadD Flp pilus assembl 98.0 0.0004 8.7E-09 51.7 12.9 151 2-157 80-230 (257)
104 PRK15359 type III secretion sy 98.0 0.00031 6.8E-09 48.7 11.9 89 2-94 38-126 (144)
105 KOG1173 Anaphase-promoting com 98.0 0.0027 5.8E-08 52.4 18.5 197 2-210 326-533 (611)
106 COG4783 Putative Zn-dependent 98.0 0.0025 5.4E-08 51.7 17.8 114 2-119 320-434 (484)
107 COG4783 Putative Zn-dependent 98.0 0.0065 1.4E-07 49.4 19.8 163 21-191 272-435 (484)
108 PRK04841 transcriptional regul 98.0 0.0025 5.3E-08 57.9 20.0 231 2-236 505-763 (903)
109 KOG1915 Cell cycle control pro 97.9 0.0024 5.2E-08 51.8 17.2 184 2-192 87-272 (677)
110 KOG1173 Anaphase-promoting com 97.9 0.0036 7.7E-08 51.7 18.5 219 1-229 257-514 (611)
111 PF09976 TPR_21: Tetratricopep 97.9 0.00063 1.4E-08 47.2 12.6 128 59-189 13-143 (145)
112 KOG1915 Cell cycle control pro 97.9 0.008 1.7E-07 48.9 21.0 224 2-232 155-394 (677)
113 KOG4340 Uncharacterized conser 97.9 0.00057 1.2E-08 52.1 12.3 180 2-189 126-335 (459)
114 cd00189 TPR Tetratricopeptide 97.9 0.00061 1.3E-08 42.5 11.1 95 26-122 3-97 (100)
115 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.0014 3.1E-08 43.4 13.1 100 24-123 3-106 (119)
116 PRK15179 Vi polysaccharide bio 97.9 0.0047 1E-07 53.9 19.0 133 19-158 82-217 (694)
117 KOG2376 Signal recognition par 97.8 0.0079 1.7E-07 50.1 19.0 216 2-234 26-254 (652)
118 PF12895 Apc3: Anaphase-promot 97.8 5.8E-05 1.3E-09 47.1 5.6 47 37-83 3-50 (84)
119 KOG2053 Mitochondrial inherita 97.8 0.0057 1.2E-07 53.2 18.4 222 2-235 23-257 (932)
120 TIGR02552 LcrH_SycD type III s 97.8 0.001 2.2E-08 45.4 11.9 93 2-98 31-123 (135)
121 KOG1914 mRNA cleavage and poly 97.8 0.0044 9.5E-08 51.1 16.5 150 39-192 347-500 (656)
122 KOG1914 mRNA cleavage and poly 97.8 0.01 2.3E-07 49.0 18.4 153 73-233 346-501 (656)
123 PF12895 Apc3: Anaphase-promot 97.7 8.2E-05 1.8E-09 46.4 4.9 80 2-83 3-83 (84)
124 KOG3060 Uncharacterized conser 97.7 0.011 2.5E-07 44.1 16.0 150 37-192 26-182 (289)
125 PRK04841 transcriptional regul 97.7 0.032 6.8E-07 50.9 22.4 232 1-234 465-721 (903)
126 KOG2002 TPR-containing nuclear 97.7 0.035 7.7E-07 49.0 21.1 162 25-193 309-481 (1018)
127 PF05843 Suf: Suppressor of fo 97.7 0.0013 2.8E-08 51.1 11.6 142 59-206 2-147 (280)
128 PF12921 ATP13: Mitochondrial 97.7 0.0013 2.8E-08 44.3 10.1 28 22-49 1-28 (126)
129 PRK14720 transcript cleavage f 97.6 0.021 4.6E-07 50.9 19.4 191 18-233 25-252 (906)
130 PF05843 Suf: Suppressor of fo 97.6 0.0053 1.2E-07 47.6 14.4 131 24-158 2-136 (280)
131 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0036 7.8E-08 41.4 11.8 87 2-88 16-106 (119)
132 KOG1128 Uncharacterized conser 97.6 0.013 2.9E-07 49.9 16.7 185 24-234 399-583 (777)
133 KOG3616 Selective LIM binding 97.6 0.00063 1.4E-08 58.0 9.0 104 104-226 743-846 (1636)
134 PF12921 ATP13: Mitochondrial 97.5 0.0014 3.1E-08 44.0 9.1 82 57-138 1-98 (126)
135 PLN03088 SGT1, suppressor of 97.5 0.0042 9.2E-08 50.0 13.2 96 1-100 15-110 (356)
136 PF03704 BTAD: Bacterial trans 97.5 0.0011 2.4E-08 46.0 8.8 71 60-131 64-139 (146)
137 KOG1125 TPR repeat-containing 97.5 0.041 8.9E-07 45.8 18.7 213 2-230 299-524 (579)
138 PF14559 TPR_19: Tetratricopep 97.5 0.00084 1.8E-08 39.8 6.6 50 36-86 4-53 (68)
139 PLN03088 SGT1, suppressor of 97.5 0.0058 1.2E-07 49.2 13.2 101 31-135 10-110 (356)
140 KOG3941 Intermediate in Toll s 97.4 0.0021 4.4E-08 48.8 9.5 100 20-119 64-185 (406)
141 cd00189 TPR Tetratricopeptide 97.4 0.0036 7.7E-08 38.9 9.8 58 62-120 4-61 (100)
142 PLN02789 farnesyltranstransfer 97.4 0.041 9E-07 43.5 19.4 187 2-192 51-249 (320)
143 PRK14720 transcript cleavage f 97.4 0.1 2.2E-06 46.8 22.5 210 2-222 45-279 (906)
144 CHL00033 ycf3 photosystem I as 97.4 0.012 2.7E-07 41.8 12.7 110 7-117 18-137 (168)
145 KOG3617 WD40 and TPR repeat-co 97.3 0.025 5.4E-07 49.3 15.9 171 2-192 742-940 (1416)
146 PRK02603 photosystem I assembl 97.3 0.023 5.1E-07 40.6 13.7 91 22-114 34-127 (172)
147 KOG0985 Vesicle coat protein c 97.3 0.067 1.5E-06 47.9 18.3 136 24-184 1105-1240(1666)
148 PF14559 TPR_19: Tetratricopep 97.3 0.0018 4E-08 38.2 6.6 62 1-65 4-65 (68)
149 PRK15363 pathogenicity island 97.2 0.011 2.3E-07 41.1 10.4 99 22-122 34-132 (157)
150 PRK02603 photosystem I assembl 97.2 0.024 5.3E-07 40.5 12.8 75 1-76 48-124 (172)
151 KOG2376 Signal recognition par 97.2 0.046 1E-06 45.8 15.5 186 28-235 17-206 (652)
152 PRK10866 outer membrane biogen 97.2 0.06 1.3E-06 40.9 17.3 81 22-104 31-115 (243)
153 KOG3941 Intermediate in Toll s 97.2 0.0096 2.1E-07 45.3 10.6 117 55-191 64-186 (406)
154 KOG3785 Uncharacterized conser 97.1 0.033 7.3E-07 43.8 13.4 173 5-190 271-454 (557)
155 PRK10803 tol-pal system protei 97.1 0.033 7.1E-07 42.8 13.1 98 24-123 144-247 (263)
156 CHL00033 ycf3 photosystem I as 97.1 0.018 3.9E-07 41.0 11.1 82 2-84 49-139 (168)
157 PF13170 DUF4003: Protein of u 97.1 0.078 1.7E-06 41.5 15.1 132 74-205 78-223 (297)
158 KOG2047 mRNA splicing factor [ 97.1 0.13 2.9E-06 43.7 16.9 174 24-206 103-288 (835)
159 KOG1156 N-terminal acetyltrans 97.0 0.16 3.5E-06 43.1 20.6 126 95-225 373-503 (700)
160 KOG3060 Uncharacterized conser 97.0 0.085 1.8E-06 39.6 16.6 186 2-193 26-220 (289)
161 PF13432 TPR_16: Tetratricopep 97.0 0.0056 1.2E-07 35.8 6.7 53 32-85 6-58 (65)
162 KOG2796 Uncharacterized conser 97.0 0.095 2.1E-06 39.7 17.1 147 60-209 179-329 (366)
163 PRK15363 pathogenicity island 97.0 0.015 3.2E-07 40.5 9.4 91 99-192 41-131 (157)
164 KOG3616 Selective LIM binding 97.0 0.026 5.7E-07 48.6 12.4 101 3-116 747-847 (1636)
165 PF13432 TPR_16: Tetratricopep 97.0 0.0065 1.4E-07 35.5 6.7 59 64-123 3-61 (65)
166 PF13170 DUF4003: Protein of u 97.0 0.12 2.7E-06 40.3 17.5 155 39-196 78-254 (297)
167 PRK10153 DNA-binding transcrip 96.9 0.059 1.3E-06 45.6 14.4 59 59-119 421-479 (517)
168 KOG1125 TPR repeat-containing 96.9 0.19 4.1E-06 42.1 17.3 199 33-243 295-501 (579)
169 KOG1156 N-terminal acetyltrans 96.9 0.21 4.5E-06 42.5 18.5 200 2-208 55-261 (700)
170 KOG2047 mRNA splicing factor [ 96.9 0.22 4.7E-06 42.6 22.5 221 2-229 361-611 (835)
171 PF03704 BTAD: Bacterial trans 96.9 0.011 2.4E-07 40.9 8.5 58 95-155 64-122 (146)
172 PRK10153 DNA-binding transcrip 96.9 0.13 2.8E-06 43.6 16.1 143 53-202 332-489 (517)
173 PLN02789 farnesyltranstransfer 96.8 0.17 3.8E-06 40.1 23.5 140 26-171 40-183 (320)
174 PF12688 TPR_5: Tetratrico pep 96.8 0.064 1.4E-06 35.8 11.2 88 31-120 9-102 (120)
175 PF14938 SNAP: Soluble NSF att 96.8 0.12 2.6E-06 40.2 14.5 169 24-193 36-225 (282)
176 KOG3785 Uncharacterized conser 96.8 0.19 4.1E-06 39.8 14.9 125 30-159 366-491 (557)
177 PF12688 TPR_5: Tetratrico pep 96.7 0.084 1.8E-06 35.2 12.8 98 2-105 15-118 (120)
178 KOG2053 Mitochondrial inherita 96.7 0.38 8.2E-06 42.5 19.9 187 2-194 57-256 (932)
179 PF13414 TPR_11: TPR repeat; P 96.7 0.018 3.8E-07 34.0 7.3 60 59-119 4-64 (69)
180 PRK10866 outer membrane biogen 96.6 0.19 4.2E-06 38.1 20.0 165 60-231 35-239 (243)
181 PF13414 TPR_11: TPR repeat; P 96.6 0.018 3.8E-07 34.0 6.9 64 22-86 2-66 (69)
182 KOG1174 Anaphase-promoting com 96.6 0.29 6.2E-06 39.6 19.8 135 66-207 342-479 (564)
183 PF08631 SPO22: Meiosis protei 96.6 0.24 5.3E-06 38.5 22.1 224 2-229 7-271 (278)
184 KOG1127 TPR repeat-containing 96.5 0.58 1.3E-05 42.1 17.5 163 59-230 493-656 (1238)
185 PF14938 SNAP: Soluble NSF att 96.5 0.28 6.1E-06 38.2 15.3 90 139-231 124-223 (282)
186 PF02259 FAT: FAT domain; Int 96.5 0.33 7.1E-06 38.9 15.6 203 29-237 4-217 (352)
187 PF13371 TPR_9: Tetratricopept 96.5 0.035 7.7E-07 33.1 7.5 54 32-86 4-57 (73)
188 PF13371 TPR_9: Tetratricopept 96.4 0.035 7.6E-07 33.1 7.4 57 66-123 3-59 (73)
189 KOG4162 Predicted calmodulin-b 96.3 0.64 1.4E-05 40.5 19.1 102 17-119 317-420 (799)
190 PF13525 YfiO: Outer membrane 96.3 0.27 5.9E-06 36.2 15.7 59 29-87 11-71 (203)
191 PF13424 TPR_12: Tetratricopep 96.3 0.019 4E-07 34.9 5.7 61 24-84 6-72 (78)
192 PF13424 TPR_12: Tetratricopep 96.3 0.022 4.7E-07 34.6 6.0 62 59-120 6-73 (78)
193 PF07035 Mic1: Colon cancer-as 96.3 0.24 5.1E-06 35.1 14.6 138 78-236 14-152 (167)
194 PF04840 Vps16_C: Vps16, C-ter 96.3 0.055 1.2E-06 42.8 9.4 86 23-118 177-262 (319)
195 KOG0553 TPR repeat-containing 96.2 0.12 2.5E-06 39.8 10.4 100 33-137 91-191 (304)
196 KOG3617 WD40 and TPR repeat-co 96.1 0.37 8E-06 42.5 14.1 136 33-189 810-963 (1416)
197 PF10300 DUF3808: Protein of u 96.0 0.67 1.4E-05 39.0 15.2 154 1-157 201-375 (468)
198 KOG4162 Predicted calmodulin-b 96.0 0.96 2.1E-05 39.5 19.0 80 47-127 312-391 (799)
199 PRK10803 tol-pal system protei 96.0 0.22 4.8E-06 38.3 11.3 86 2-87 157-246 (263)
200 KOG1127 TPR repeat-containing 96.0 0.42 9E-06 43.0 13.8 86 68-157 572-658 (1238)
201 KOG0553 TPR repeat-containing 95.9 0.13 2.9E-06 39.5 9.4 95 1-100 94-189 (304)
202 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.35 7.7E-06 39.7 12.3 65 21-87 73-141 (453)
203 COG5107 RNA14 Pre-mRNA 3'-end 95.8 0.34 7.3E-06 39.7 11.7 131 58-192 397-530 (660)
204 PF04840 Vps16_C: Vps16, C-ter 95.8 0.75 1.6E-05 36.5 14.0 112 58-190 177-288 (319)
205 PF13525 YfiO: Outer membrane 95.6 0.62 1.3E-05 34.3 17.8 50 2-51 19-70 (203)
206 KOG2796 Uncharacterized conser 95.5 0.78 1.7E-05 35.0 13.1 135 25-162 179-319 (366)
207 COG3629 DnrI DNA-binding trans 95.5 0.32 6.9E-06 37.5 10.4 77 59-136 154-235 (280)
208 KOG2041 WD40 repeat protein [G 95.5 0.24 5.1E-06 42.8 10.2 72 2-82 748-820 (1189)
209 KOG4570 Uncharacterized conser 95.4 0.15 3.2E-06 39.7 8.2 103 18-122 59-164 (418)
210 KOG2280 Vacuolar assembly/sort 95.4 0.95 2.1E-05 39.5 13.4 111 90-225 681-791 (829)
211 PRK15331 chaperone protein Sic 95.3 0.25 5.3E-06 34.8 8.4 91 30-122 44-134 (165)
212 KOG0624 dsRNA-activated protei 95.2 1.2 2.6E-05 35.3 21.7 188 2-200 52-257 (504)
213 PF09205 DUF1955: Domain of un 95.1 0.64 1.4E-05 31.5 10.0 65 60-125 88-152 (161)
214 COG1729 Uncharacterized protei 95.0 0.79 1.7E-05 34.9 11.0 96 25-123 144-245 (262)
215 smart00299 CLH Clathrin heavy 95.0 0.73 1.6E-05 31.5 11.3 129 24-175 8-136 (140)
216 smart00299 CLH Clathrin heavy 94.9 0.75 1.6E-05 31.5 14.5 110 62-189 11-121 (140)
217 PF02284 COX5A: Cytochrome c o 94.9 0.28 6E-06 31.4 7.0 62 39-101 26-87 (108)
218 cd00923 Cyt_c_Oxidase_Va Cytoc 94.9 0.34 7.3E-06 30.7 7.3 63 38-101 22-84 (103)
219 PF10300 DUF3808: Protein of u 94.9 1.9 4E-05 36.4 14.0 160 28-191 193-374 (468)
220 KOG4570 Uncharacterized conser 94.8 0.24 5.2E-06 38.5 7.9 102 87-193 58-164 (418)
221 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.37 8.1E-06 39.6 9.1 66 55-122 72-141 (453)
222 COG4235 Cytochrome c biogenesi 94.7 1.6 3.4E-05 33.8 12.9 101 21-123 154-257 (287)
223 PRK15331 chaperone protein Sic 94.3 0.42 9.2E-06 33.6 7.6 86 104-192 48-133 (165)
224 PF13762 MNE1: Mitochondrial s 94.3 1.1 2.5E-05 30.8 10.2 82 25-106 41-128 (145)
225 PF10602 RPN7: 26S proteasome 94.2 1.1 2.5E-05 32.1 10.0 62 24-85 37-100 (177)
226 COG3629 DnrI DNA-binding trans 94.2 0.88 1.9E-05 35.2 9.8 79 93-173 153-236 (280)
227 PF04053 Coatomer_WDAD: Coatom 94.2 2.4 5.2E-05 35.4 12.9 133 23-189 295-427 (443)
228 PF13512 TPR_18: Tetratricopep 94.1 1.1 2.3E-05 30.8 9.1 92 31-122 18-128 (142)
229 PF04053 Coatomer_WDAD: Coatom 94.1 0.75 1.6E-05 38.3 9.9 79 30-123 325-403 (443)
230 PF10602 RPN7: 26S proteasome 94.1 1.3 2.8E-05 31.9 10.0 62 59-120 37-100 (177)
231 KOG0624 dsRNA-activated protei 93.9 2.6 5.7E-05 33.6 19.6 187 2-192 120-335 (504)
232 COG4105 ComL DNA uptake lipopr 93.7 2.3 5E-05 32.3 18.1 171 21-193 33-233 (254)
233 KOG0985 Vesicle coat protein c 93.7 5.6 0.00012 36.6 17.8 117 58-190 1104-1220(1666)
234 PF07079 DUF1347: Protein of u 93.6 2.3 4.9E-05 35.2 11.3 138 35-177 18-180 (549)
235 KOG1174 Anaphase-promoting com 93.4 3.7 8E-05 33.6 18.8 154 33-189 206-393 (564)
236 COG4235 Cytochrome c biogenesi 93.4 2.9 6.3E-05 32.4 12.8 113 92-207 155-268 (287)
237 KOG1538 Uncharacterized conser 93.4 4.9 0.00011 34.9 14.9 86 139-235 757-848 (1081)
238 PF00637 Clathrin: Region in C 93.4 0.039 8.4E-07 38.0 1.2 85 28-119 12-96 (143)
239 PF09205 DUF1955: Domain of un 93.4 1.7 3.6E-05 29.5 13.6 134 2-161 16-152 (161)
240 PF13929 mRNA_stabil: mRNA sta 93.3 3.1 6.7E-05 32.3 11.4 117 36-153 141-262 (292)
241 PF07035 Mic1: Colon cancer-as 93.0 2.3 5.1E-05 30.2 15.5 99 11-119 17-115 (167)
242 PF13281 DUF4071: Domain of un 93.0 4.2 9E-05 33.0 20.9 170 22-193 140-334 (374)
243 COG5107 RNA14 Pre-mRNA 3'-end 92.9 4.8 0.0001 33.4 13.2 131 23-157 397-530 (660)
244 KOG4555 TPR repeat-containing 92.8 2.1 4.5E-05 29.1 11.1 104 32-137 52-169 (175)
245 PF13176 TPR_7: Tetratricopept 92.8 0.34 7.3E-06 24.4 3.9 23 61-83 2-24 (36)
246 PF13929 mRNA_stabil: mRNA sta 92.8 1 2.2E-05 34.8 7.9 111 109-224 144-258 (292)
247 COG4700 Uncharacterized protei 92.7 2.8 6.2E-05 30.4 16.6 126 54-184 85-213 (251)
248 PF07163 Pex26: Pex26 protein; 92.7 2.6 5.7E-05 32.5 9.9 91 26-116 86-181 (309)
249 PF13428 TPR_14: Tetratricopep 92.7 0.49 1.1E-05 25.0 4.7 27 61-87 4-30 (44)
250 KOG0548 Molecular co-chaperone 92.7 5.5 0.00012 33.6 14.6 183 4-192 240-454 (539)
251 COG1729 Uncharacterized protei 92.7 3.6 7.9E-05 31.5 11.1 87 1-87 154-244 (262)
252 PF13281 DUF4071: Domain of un 92.6 4.7 0.0001 32.7 16.7 168 59-233 142-334 (374)
253 COG4649 Uncharacterized protei 92.6 2.8 6.1E-05 30.0 13.0 141 57-198 58-201 (221)
254 PF13176 TPR_7: Tetratricopept 92.5 0.45 9.7E-06 23.9 4.2 26 166-191 1-26 (36)
255 PF11207 DUF2989: Protein of u 92.5 2.4 5.3E-05 31.0 9.1 79 33-113 117-198 (203)
256 PF13512 TPR_18: Tetratricopep 92.4 2.5 5.5E-05 29.0 12.1 64 59-123 12-77 (142)
257 KOG0543 FKBP-type peptidyl-pro 92.2 4.1 8.9E-05 33.0 10.9 99 32-133 217-329 (397)
258 PF08631 SPO22: Meiosis protei 91.9 4.9 0.00011 31.3 19.9 165 24-190 85-272 (278)
259 PF04184 ST7: ST7 protein; In 91.8 7.1 0.00015 32.8 12.3 61 63-123 264-325 (539)
260 PF02284 COX5A: Cytochrome c o 91.8 2.3 5.1E-05 27.3 8.2 59 147-206 28-86 (108)
261 COG4700 Uncharacterized protei 91.2 4.5 9.7E-05 29.4 16.3 102 89-193 85-189 (251)
262 KOG0548 Molecular co-chaperone 91.1 8.4 0.00018 32.5 16.7 165 25-193 226-421 (539)
263 KOG1550 Extracellular protein 91.1 9.5 0.00021 33.0 17.3 184 4-194 228-427 (552)
264 KOG2610 Uncharacterized conser 91.1 6.7 0.00015 31.3 10.9 85 36-121 116-203 (491)
265 PF13374 TPR_10: Tetratricopep 90.6 0.87 1.9E-05 23.3 4.3 25 60-84 4-28 (42)
266 PF13374 TPR_10: Tetratricopep 90.5 1 2.2E-05 23.0 4.5 29 164-192 2-30 (42)
267 KOG0276 Vesicle coat complex C 90.0 7.5 0.00016 33.5 10.8 133 24-190 615-747 (794)
268 PF13428 TPR_14: Tetratricopep 89.9 1.8 3.8E-05 22.8 5.5 29 24-52 2-30 (44)
269 KOG2610 Uncharacterized conser 89.9 8.7 0.00019 30.7 12.4 149 2-154 117-272 (491)
270 KOG4555 TPR repeat-containing 89.7 4.8 0.0001 27.4 11.1 105 67-172 52-168 (175)
271 cd00923 Cyt_c_Oxidase_Va Cytoc 89.7 3.7 8E-05 26.1 8.3 67 139-206 16-83 (103)
272 PF09613 HrpB1_HrpK: Bacterial 89.4 5.8 0.00013 27.9 11.1 52 69-122 21-73 (160)
273 KOG0543 FKBP-type peptidyl-pro 89.0 8.9 0.00019 31.2 10.2 96 23-121 257-354 (397)
274 PF11848 DUF3368: Domain of un 89.0 2.1 4.5E-05 23.2 4.9 30 71-100 15-44 (48)
275 KOG2114 Vacuolar assembly/sort 88.9 17 0.00036 32.8 12.4 81 32-119 377-457 (933)
276 PF07079 DUF1347: Protein of u 88.8 13 0.00027 31.1 11.5 131 2-136 20-175 (549)
277 KOG4077 Cytochrome c oxidase, 88.6 4.5 9.7E-05 27.2 6.9 43 78-120 69-111 (149)
278 COG3898 Uncharacterized membra 88.3 13 0.00028 30.5 19.9 190 1-198 97-297 (531)
279 PF04097 Nic96: Nup93/Nic96; 88.0 1.7 3.6E-05 38.0 6.2 36 199-237 500-535 (613)
280 PF11848 DUF3368: Domain of un 87.9 2.9 6.4E-05 22.7 5.1 38 30-67 9-46 (48)
281 KOG2114 Vacuolar assembly/sort 87.5 13 0.00029 33.3 11.0 92 25-127 336-431 (933)
282 PF13762 MNE1: Mitochondrial s 87.4 7.6 0.00016 26.9 11.7 83 95-177 41-128 (145)
283 PF09613 HrpB1_HrpK: Bacterial 87.1 8.5 0.00018 27.1 12.0 103 24-130 8-114 (160)
284 PF00637 Clathrin: Region in C 87.1 0.26 5.6E-06 33.9 0.7 77 2-85 21-97 (143)
285 TIGR03504 FimV_Cterm FimV C-te 87.0 2.7 5.9E-05 22.4 4.4 23 100-122 6-28 (44)
286 COG3118 Thioredoxin domain-con 86.9 13 0.00028 29.1 14.0 148 31-183 142-291 (304)
287 COG1747 Uncharacterized N-term 86.8 18 0.0004 30.7 16.2 164 21-192 64-233 (711)
288 PHA02875 ankyrin repeat protei 86.2 5.2 0.00011 33.0 8.0 70 9-82 16-89 (413)
289 COG3947 Response regulator con 84.7 9.4 0.0002 29.8 7.9 71 60-131 281-356 (361)
290 TIGR02561 HrpB1_HrpK type III 84.6 11 0.00024 26.2 7.9 51 69-123 21-74 (153)
291 TIGR03504 FimV_Cterm FimV C-te 84.3 3.2 6.8E-05 22.1 3.9 24 64-87 5-28 (44)
292 COG4105 ComL DNA uptake lipopr 84.0 17 0.00037 27.8 20.3 174 56-233 33-233 (254)
293 COG4455 ImpE Protein of avirul 83.8 13 0.00028 27.8 8.0 55 28-83 6-60 (273)
294 PF07721 TPR_4: Tetratricopept 83.5 2.2 4.7E-05 19.5 2.8 20 98-117 6-25 (26)
295 PF11846 DUF3366: Domain of un 83.4 10 0.00022 27.6 7.7 60 63-122 113-173 (193)
296 KOG2280 Vacuolar assembly/sort 83.4 7.7 0.00017 34.2 7.7 85 24-118 685-769 (829)
297 PF00515 TPR_1: Tetratricopept 83.4 3.8 8.2E-05 19.8 4.2 27 60-86 3-29 (34)
298 PF11207 DUF2989: Protein of u 83.2 16 0.00035 26.9 8.9 79 67-148 116-197 (203)
299 COG4455 ImpE Protein of avirul 83.0 8 0.00017 28.9 6.7 77 60-137 3-81 (273)
300 PF11846 DUF3366: Domain of un 82.9 9.1 0.0002 27.9 7.2 31 126-157 142-172 (193)
301 PF02259 FAT: FAT domain; Int 81.8 25 0.00053 28.1 15.3 184 2-192 12-212 (352)
302 PF11663 Toxin_YhaV: Toxin wit 81.8 1.8 3.8E-05 29.3 2.8 29 37-67 109-137 (140)
303 PF13174 TPR_6: Tetratricopept 81.6 4.3 9.3E-05 19.2 3.8 24 170-193 6-29 (33)
304 cd00280 TRFH Telomeric Repeat 81.3 18 0.00039 26.2 7.7 64 39-105 85-155 (200)
305 cd00280 TRFH Telomeric Repeat 81.3 18 0.00039 26.2 7.7 67 4-73 85-158 (200)
306 PF13431 TPR_17: Tetratricopep 81.2 2.8 6.2E-05 20.7 2.9 22 163-184 12-33 (34)
307 COG4649 Uncharacterized protei 80.2 19 0.00042 25.9 13.8 128 34-162 69-200 (221)
308 PF07163 Pex26: Pex26 protein; 80.2 24 0.00052 27.5 8.5 88 65-152 90-181 (309)
309 PHA02875 ankyrin repeat protei 79.4 8.2 0.00018 31.8 6.7 80 30-117 6-89 (413)
310 COG4785 NlpI Lipoprotein NlpI, 79.4 24 0.00052 26.5 14.2 30 164-193 237-266 (297)
311 PF10579 Rapsyn_N: Rapsyn N-te 79.2 9.7 0.00021 23.2 5.1 45 35-79 18-64 (80)
312 PF12926 MOZART2: Mitotic-spin 79.1 13 0.00028 23.1 7.9 63 22-86 9-71 (88)
313 KOG0276 Vesicle coat complex C 79.0 44 0.00094 29.2 10.4 77 32-123 646-722 (794)
314 COG3118 Thioredoxin domain-con 79.0 29 0.00063 27.2 15.2 120 65-192 141-264 (304)
315 COG0735 Fur Fe2+/Zn2+ uptake r 78.9 19 0.00041 25.0 7.7 48 45-93 8-55 (145)
316 PRK10564 maltose regulon perip 78.9 5.7 0.00012 31.0 5.0 36 26-61 260-295 (303)
317 COG2909 MalT ATP-dependent tra 78.2 55 0.0012 29.9 18.3 228 2-229 429-684 (894)
318 COG2137 OraA Uncharacterized p 77.1 24 0.00053 25.3 13.1 109 77-190 54-164 (174)
319 PF13181 TPR_8: Tetratricopept 77.0 6.7 0.00015 18.8 4.2 26 60-85 3-28 (34)
320 KOG2908 26S proteasome regulat 76.9 37 0.0008 27.3 9.1 84 62-145 79-173 (380)
321 PF07719 TPR_2: Tetratricopept 76.9 6.6 0.00014 18.7 4.5 27 166-192 3-29 (34)
322 KOG0550 Molecular chaperone (D 76.9 41 0.0009 27.8 13.0 162 55-229 165-346 (486)
323 TIGR02508 type_III_yscG type I 76.7 13 0.00027 24.0 5.2 50 171-231 46-95 (115)
324 TIGR01503 MthylAspMut_E methyl 76.6 27 0.00059 29.3 8.4 76 38-122 29-115 (480)
325 PRK10564 maltose regulon perip 76.3 8.9 0.00019 30.0 5.4 45 90-134 253-298 (303)
326 COG3947 Response regulator con 75.8 37 0.0008 26.7 8.5 107 56-168 242-357 (361)
327 PRK11639 zinc uptake transcrip 75.1 27 0.00059 24.9 7.5 61 49-110 17-77 (169)
328 COG0457 NrfG FOG: TPR repeat [ 75.0 27 0.0006 24.9 20.8 188 4-193 39-231 (291)
329 COG0735 Fur Fe2+/Zn2+ uptake r 75.0 25 0.00054 24.4 7.3 65 8-73 6-70 (145)
330 PF11838 ERAP1_C: ERAP1-like C 75.0 39 0.00086 26.7 13.6 86 35-123 142-231 (324)
331 COG5187 RPN7 26S proteasome re 74.5 40 0.00087 26.5 14.8 134 54-191 77-219 (412)
332 PF14689 SPOB_a: Sensor_kinase 74.1 13 0.00029 21.4 4.7 24 96-119 26-49 (62)
333 PF14689 SPOB_a: Sensor_kinase 72.9 13 0.00028 21.4 4.4 24 63-86 28-51 (62)
334 PF10579 Rapsyn_N: Rapsyn N-te 72.2 14 0.00031 22.5 4.5 45 2-46 20-66 (80)
335 PF11663 Toxin_YhaV: Toxin wit 71.9 5.6 0.00012 27.0 3.0 30 71-102 108-137 (140)
336 PF10366 Vps39_1: Vacuolar sor 71.7 25 0.00054 22.9 7.7 26 61-86 42-67 (108)
337 PF03745 DUF309: Domain of unk 71.4 17 0.00037 20.9 5.3 47 34-80 10-61 (62)
338 KOG3807 Predicted membrane pro 71.0 53 0.0012 26.4 9.0 61 63-123 280-341 (556)
339 PF14669 Asp_Glu_race_2: Putat 71.0 13 0.00028 27.2 4.8 57 62-118 136-206 (233)
340 TIGR02561 HrpB1_HrpK type III 70.7 33 0.00072 23.9 11.6 109 24-137 8-121 (153)
341 COG5108 RPO41 Mitochondrial DN 70.3 72 0.0016 28.4 9.7 78 28-105 33-115 (1117)
342 cd08819 CARD_MDA5_2 Caspase ac 70.3 24 0.00051 22.1 7.0 64 43-112 22-85 (88)
343 PF12796 Ank_2: Ankyrin repeat 69.7 9.1 0.0002 23.4 3.6 26 64-93 29-54 (89)
344 COG0457 NrfG FOG: TPR repeat [ 69.2 38 0.00083 24.1 23.9 187 3-192 74-264 (291)
345 KOG4567 GTPase-activating prot 68.9 53 0.0011 26.1 8.0 57 43-104 263-319 (370)
346 PF10366 Vps39_1: Vacuolar sor 68.8 29 0.00064 22.6 7.3 27 166-192 41-67 (108)
347 cd08819 CARD_MDA5_2 Caspase ac 68.5 26 0.00057 21.9 7.0 67 7-79 21-87 (88)
348 PF11817 Foie-gras_1: Foie gra 67.9 44 0.00095 25.5 7.6 60 61-120 181-245 (247)
349 KOG2297 Predicted translation 67.6 61 0.0013 25.8 11.0 21 164-184 321-341 (412)
350 PRK11639 zinc uptake transcrip 67.6 42 0.00091 23.9 8.1 39 36-74 38-76 (169)
351 PF02847 MA3: MA3 domain; Int 67.4 31 0.00067 22.3 9.2 22 98-119 7-28 (113)
352 PF08311 Mad3_BUB1_I: Mad3/BUB 65.5 39 0.00084 22.7 6.9 42 76-117 81-123 (126)
353 KOG0687 26S proteasome regulat 65.3 70 0.0015 25.7 16.1 135 53-191 65-208 (393)
354 PRK11906 transcriptional regul 64.3 88 0.0019 26.4 12.3 81 36-119 317-398 (458)
355 KOG1920 IkappaB kinase complex 63.9 1.4E+02 0.003 28.6 14.3 143 25-189 895-1051(1265)
356 cd00245 Glm_e Coenzyme B12-dep 63.0 21 0.00047 29.6 5.3 47 36-85 24-70 (428)
357 PF09477 Type_III_YscG: Bacter 62.9 40 0.00088 22.1 6.6 37 146-183 23-59 (116)
358 PF10475 DUF2450: Protein of u 62.3 75 0.0016 25.0 8.4 110 63-184 103-217 (291)
359 cd07153 Fur_like Ferric uptake 61.7 29 0.00062 22.7 5.0 44 65-108 7-50 (116)
360 KOG0890 Protein kinase of the 61.6 78 0.0017 32.5 9.2 110 65-184 1390-1503(2382)
361 PRK09462 fur ferric uptake reg 61.5 51 0.0011 22.8 7.4 60 49-109 8-68 (148)
362 COG5159 RPN6 26S proteasome re 61.3 80 0.0017 24.9 12.0 51 30-80 10-67 (421)
363 smart00386 HAT HAT (Half-A-TPR 61.1 16 0.00035 16.9 3.8 29 2-31 1-29 (33)
364 smart00638 LPD_N Lipoprotein N 60.5 1.2E+02 0.0025 26.6 15.5 117 56-178 308-432 (574)
365 PRK13342 recombination factor 60.0 1E+02 0.0022 25.7 13.8 142 75-236 154-302 (413)
366 PF02184 HAT: HAT (Half-A-TPR) 59.5 16 0.00034 18.0 2.5 24 3-28 2-25 (32)
367 PF02847 MA3: MA3 domain; Int 59.4 46 0.00099 21.5 7.8 21 64-84 8-28 (113)
368 TIGR03581 EF_0839 conserved hy 59.0 40 0.00088 25.1 5.5 81 39-119 137-234 (236)
369 KOG4077 Cytochrome c oxidase, 58.9 54 0.0012 22.2 9.1 48 146-193 66-113 (149)
370 TIGR02508 type_III_yscG type I 58.6 48 0.001 21.5 8.1 53 65-123 46-98 (115)
371 KOG2063 Vacuolar assembly/sort 58.5 92 0.002 28.8 8.7 113 24-136 505-634 (877)
372 PF07575 Nucleopor_Nup85: Nup8 57.8 32 0.00069 30.0 5.8 170 22-209 371-540 (566)
373 cd07153 Fur_like Ferric uptake 57.5 43 0.00094 21.8 5.3 47 29-75 6-52 (116)
374 KOG2659 LisH motif-containing 57.4 81 0.0018 23.8 7.0 96 90-188 23-127 (228)
375 PF09454 Vps23_core: Vps23 cor 57.1 37 0.00081 19.8 4.6 49 21-70 6-54 (65)
376 KOG2659 LisH motif-containing 56.8 83 0.0018 23.7 9.2 99 19-119 22-129 (228)
377 PRK09462 fur ferric uptake reg 56.3 64 0.0014 22.3 7.8 16 109-124 33-48 (148)
378 COG3898 Uncharacterized membra 56.2 1.2E+02 0.0025 25.3 20.6 82 1-86 133-216 (531)
379 PRK09857 putative transposase; 56.2 99 0.0021 24.4 9.3 63 62-125 210-272 (292)
380 PF07575 Nucleopor_Nup85: Nup8 55.8 49 0.0011 28.9 6.6 30 92-121 404-433 (566)
381 KOG1550 Extracellular protein 55.7 1.4E+02 0.0031 26.0 16.5 150 39-194 228-394 (552)
382 KOG1464 COP9 signalosome, subu 55.5 99 0.0022 24.2 15.4 213 16-230 19-258 (440)
383 smart00028 TPR Tetratricopepti 55.3 19 0.00041 15.8 3.3 25 61-85 4-28 (34)
384 KOG3036 Protein involved in ce 54.9 96 0.0021 23.9 7.1 66 139-206 206-272 (293)
385 PF11768 DUF3312: Protein of u 54.4 1.5E+02 0.0031 25.8 10.2 23 63-85 413-435 (545)
386 PRK15180 Vi polysaccharide bio 54.1 1.4E+02 0.0031 25.6 11.3 118 2-123 303-421 (831)
387 COG2405 Predicted nucleic acid 53.5 37 0.00079 23.4 4.3 31 71-101 122-152 (157)
388 PF01475 FUR: Ferric uptake re 53.5 32 0.00069 22.7 4.2 46 63-108 12-57 (120)
389 KOG1585 Protein required for f 53.4 1E+02 0.0022 23.8 11.1 115 71-188 123-251 (308)
390 PF03745 DUF309: Domain of unk 53.4 42 0.00092 19.3 5.2 46 1-46 12-62 (62)
391 PF14840 DNA_pol3_delt_C: Proc 53.2 15 0.00032 24.8 2.5 27 1-27 10-36 (125)
392 PF06368 Met_asp_mut_E: Methyl 53.0 28 0.00062 28.8 4.4 25 212-236 209-236 (441)
393 KOG1166 Mitotic checkpoint ser 52.9 64 0.0014 30.2 6.9 59 105-163 90-148 (974)
394 PF12926 MOZART2: Mitotic-spin 52.4 56 0.0012 20.4 7.9 43 79-121 29-71 (88)
395 PHA02989 ankyrin repeat protei 52.2 1.5E+02 0.0032 25.3 10.2 110 9-126 17-137 (494)
396 TIGR03581 EF_0839 conserved hy 52.0 64 0.0014 24.1 5.6 83 3-85 136-235 (236)
397 PRK15180 Vi polysaccharide bio 51.9 1.5E+02 0.0033 25.4 8.8 80 113-196 310-389 (831)
398 PF01475 FUR: Ferric uptake re 51.9 47 0.001 21.9 4.8 44 29-72 13-56 (120)
399 KOG0991 Replication factor C, 51.8 1.1E+02 0.0023 23.5 13.7 91 105-199 171-273 (333)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 51.5 72 0.0016 21.4 9.5 44 111-154 81-124 (126)
401 PF13934 ELYS: Nuclear pore co 51.1 1E+02 0.0023 23.2 10.2 110 51-175 72-183 (226)
402 PF09868 DUF2095: Uncharacteri 50.6 71 0.0015 21.1 5.3 25 64-88 67-91 (128)
403 COG0819 TenA Putative transcri 50.2 1.1E+02 0.0023 23.0 8.0 26 17-42 103-128 (218)
404 COG0001 HemL Glutamate-1-semia 50.0 50 0.0011 27.5 5.4 28 179-206 378-405 (432)
405 KOG0508 Ankyrin repeat protein 49.6 1.1E+02 0.0023 26.1 7.1 143 34-188 50-204 (615)
406 PF10345 Cohesin_load: Cohesin 49.1 1.9E+02 0.0041 25.6 19.8 196 35-231 373-604 (608)
407 PF11838 ERAP1_C: ERAP1-like C 48.4 1.3E+02 0.0029 23.6 22.0 148 74-228 146-303 (324)
408 PF08870 DUF1832: Domain of un 48.2 59 0.0013 21.5 4.6 28 6-33 7-36 (113)
409 PF09868 DUF2095: Uncharacteri 47.6 81 0.0018 20.9 5.7 37 29-66 67-103 (128)
410 KOG2168 Cullins [Cell cycle co 47.3 2.1E+02 0.0046 26.3 9.0 91 139-231 632-734 (835)
411 TIGR01503 MthylAspMut_E methyl 46.8 44 0.00094 28.1 4.6 47 38-87 69-115 (480)
412 KOG1538 Uncharacterized conser 46.8 2.2E+02 0.0047 25.6 15.1 59 22-83 597-657 (1081)
413 cd08789 CARD_IPS-1_RIG-I Caspa 46.8 67 0.0015 19.8 4.5 40 140-184 43-82 (84)
414 KOG2908 26S proteasome regulat 46.7 1.6E+02 0.0034 23.9 10.6 87 25-111 77-175 (380)
415 PF09670 Cas_Cas02710: CRISPR- 46.7 1.7E+02 0.0036 24.2 11.7 55 67-122 140-198 (379)
416 PRK11906 transcriptional regul 46.5 1.8E+02 0.004 24.6 15.4 148 38-189 273-432 (458)
417 PRK14958 DNA polymerase III su 46.5 1.9E+02 0.0042 25.0 12.1 74 16-92 193-279 (509)
418 COG2405 Predicted nucleic acid 46.5 58 0.0013 22.4 4.4 43 25-68 112-154 (157)
419 COG2137 OraA Uncharacterized p 46.3 1.1E+02 0.0024 22.0 11.6 75 42-120 54-128 (174)
420 PF02607 B12-binding_2: B12 bi 46.0 48 0.001 19.8 3.8 32 36-67 14-45 (79)
421 COG4003 Uncharacterized protei 45.7 48 0.001 20.4 3.5 26 169-194 36-61 (98)
422 PRK08691 DNA polymerase III su 44.6 2.4E+02 0.0053 25.5 11.5 85 40-127 181-279 (709)
423 PF12862 Apc5: Anaphase-promot 44.6 78 0.0017 19.8 7.0 54 33-86 8-69 (94)
424 PF07443 HARP: HepA-related pr 44.3 11 0.00023 21.2 0.6 30 5-34 9-38 (55)
425 KOG0890 Protein kinase of the 44.2 4.1E+02 0.0088 28.0 16.8 67 164-238 1670-1736(2382)
426 PF02617 ClpS: ATP-dependent C 43.9 69 0.0015 19.5 4.3 58 165-239 17-76 (82)
427 PLN03025 replication factor C 43.6 1.7E+02 0.0036 23.3 11.5 21 143-163 238-258 (319)
428 PF04184 ST7: ST7 protein; In 43.6 2.1E+02 0.0046 24.6 16.1 76 98-173 264-340 (539)
429 PF09670 Cas_Cas02710: CRISPR- 43.4 91 0.002 25.7 6.1 51 141-192 143-197 (379)
430 PF01347 Vitellogenin_N: Lipop 43.4 2.3E+02 0.005 25.0 12.2 62 60-124 348-409 (618)
431 TIGR03184 DNA_S_dndE DNA sulfu 42.7 74 0.0016 20.7 4.4 29 5-33 5-35 (105)
432 PHA02798 ankyrin-like protein; 42.3 1.3E+02 0.0028 25.7 7.1 81 44-126 52-138 (489)
433 KOG1585 Protein required for f 42.3 1.6E+02 0.0035 22.8 10.7 194 23-226 31-249 (308)
434 COG5210 GTPase-activating prot 42.0 2.3E+02 0.0049 24.4 12.6 62 75-136 359-420 (496)
435 KOG2063 Vacuolar assembly/sort 41.8 2.6E+02 0.0056 26.1 8.8 116 60-176 506-638 (877)
436 PRK14963 DNA polymerase III su 41.6 2.3E+02 0.005 24.5 12.0 30 168-198 246-275 (504)
437 PF08542 Rep_fac_C: Replicatio 41.5 83 0.0018 19.3 4.8 32 94-126 6-37 (89)
438 COG1466 HolA DNA polymerase II 41.4 1.9E+02 0.004 23.3 9.4 81 45-127 149-242 (334)
439 PF11817 Foie-gras_1: Foie gra 41.3 1.6E+02 0.0034 22.5 7.8 78 75-155 162-244 (247)
440 cd08790 DED_DEDD Death Effecto 41.0 44 0.00096 21.3 3.0 56 36-93 37-92 (97)
441 COG2178 Predicted RNA-binding 40.8 1.3E+02 0.0029 22.1 5.7 100 22-122 28-150 (204)
442 PF04762 IKI3: IKI3 family; I 39.8 3.3E+02 0.0072 25.7 13.9 112 93-228 812-925 (928)
443 PRK09857 putative transposase; 39.4 1.9E+02 0.0041 22.8 8.5 67 25-92 208-274 (292)
444 COG5159 RPN6 26S proteasome re 39.4 1.9E+02 0.0042 22.9 10.5 52 64-115 9-67 (421)
445 COG0011 Uncharacterized conser 39.3 47 0.001 21.4 3.0 41 191-241 31-71 (100)
446 PF10345 Cohesin_load: Cohesin 39.3 2.8E+02 0.006 24.6 19.1 185 6-191 39-252 (608)
447 PF06552 TOM20_plant: Plant sp 38.8 1.5E+02 0.0033 21.5 8.4 15 90-104 110-124 (186)
448 PF11123 DNA_Packaging_2: DNA 38.4 90 0.002 18.8 4.2 33 73-106 12-44 (82)
449 PF05664 DUF810: Protein of un 38.1 2.6E+02 0.0057 25.2 8.2 70 52-121 211-294 (677)
450 KOG4567 GTPase-activating prot 37.9 1.4E+02 0.0031 23.9 5.8 56 149-209 263-318 (370)
451 KOG0687 26S proteasome regulat 37.7 2.2E+02 0.0048 23.1 11.6 60 139-198 114-178 (393)
452 COG2178 Predicted RNA-binding 37.6 1.7E+02 0.0036 21.6 9.9 111 39-158 19-150 (204)
453 smart00777 Mad3_BUB1_I Mad3/BU 37.2 1.3E+02 0.0028 20.3 6.1 10 115-124 85-94 (125)
454 KOG3677 RNA polymerase I-assoc 36.9 2.6E+02 0.0055 23.6 8.9 141 63-206 240-391 (525)
455 PF14669 Asp_Glu_race_2: Putat 36.8 1.7E+02 0.0038 21.6 13.3 172 17-189 2-206 (233)
456 smart00164 TBC Domain in Tre-2 36.7 1.5E+02 0.0032 21.4 5.9 45 150-194 152-197 (199)
457 KOG1166 Mitotic checkpoint ser 36.3 2E+02 0.0044 27.2 7.5 58 35-92 90-148 (974)
458 KOG0989 Replication factor C, 36.3 2.3E+02 0.0049 22.8 9.3 48 43-92 195-242 (346)
459 KOG1586 Protein required for f 36.2 2E+02 0.0043 22.1 12.5 23 139-161 164-186 (288)
460 PF00244 14-3-3: 14-3-3 protei 35.9 1.9E+02 0.0042 21.9 9.5 40 29-68 7-46 (236)
461 PRK08691 DNA polymerase III su 35.9 3.4E+02 0.0074 24.7 11.8 82 8-92 184-279 (709)
462 PF04097 Nic96: Nup93/Nic96; 35.8 3.2E+02 0.0069 24.3 10.3 88 30-122 265-356 (613)
463 smart00164 TBC Domain in Tre-2 35.6 1.5E+02 0.0032 21.4 5.7 82 38-123 108-197 (199)
464 PF06552 TOM20_plant: Plant sp 35.5 1.8E+02 0.0038 21.3 8.1 27 109-137 96-122 (186)
465 PRK14958 DNA polymerase III su 34.6 3.1E+02 0.0066 23.8 12.5 77 48-127 190-279 (509)
466 KOG4648 Uncharacterized conser 34.3 1.7E+02 0.0037 23.9 5.9 76 32-117 106-182 (536)
467 PLN03192 Voltage-dependent pot 34.1 3.9E+02 0.0084 24.8 10.1 28 168-199 623-650 (823)
468 KOG4648 Uncharacterized conser 33.8 53 0.0011 26.6 3.1 47 67-115 106-153 (536)
469 PF09090 MIF4G_like_2: MIF4G l 33.5 2.2E+02 0.0048 21.8 13.2 117 21-137 9-136 (253)
470 PRK14962 DNA polymerase III su 33.4 3.1E+02 0.0067 23.5 11.7 100 1-100 209-326 (472)
471 PF04090 RNA_pol_I_TF: RNA pol 33.3 2E+02 0.0043 21.3 10.9 33 206-238 141-173 (199)
472 cd08812 CARD_RIG-I_like Caspas 33.1 1.2E+02 0.0027 18.8 4.3 38 142-183 47-85 (88)
473 KOG1130 Predicted G-alpha GTPa 33.1 48 0.001 27.6 2.8 58 24-81 16-78 (639)
474 PF09477 Type_III_YscG: Bacter 33.1 1.5E+02 0.0031 19.6 8.1 80 37-123 20-99 (116)
475 KOG0991 Replication factor C, 33.0 2.3E+02 0.005 21.9 11.3 46 126-174 237-282 (333)
476 smart00544 MA3 Domain in DAP-5 32.7 1.4E+02 0.003 19.3 10.8 22 64-85 8-29 (113)
477 PRK14956 DNA polymerase III su 32.5 3.3E+02 0.0071 23.5 11.8 86 42-129 185-284 (484)
478 cd08315 Death_TRAILR_DR4_DR5 D 32.4 1.4E+02 0.0029 19.1 5.8 31 93-123 64-94 (96)
479 TIGR00510 lipA lipoate synthas 32.2 1.6E+02 0.0034 23.5 5.5 56 99-159 180-235 (302)
480 PF14840 DNA_pol3_delt_C: Proc 31.9 49 0.0011 22.2 2.4 27 35-61 9-35 (125)
481 KOG1920 IkappaB kinase complex 31.4 5E+02 0.011 25.3 12.4 145 34-192 862-1027(1265)
482 PRK14963 DNA polymerase III su 31.3 3.5E+02 0.0076 23.4 11.6 85 40-127 178-275 (504)
483 PF14853 Fis1_TPR_C: Fis1 C-te 31.1 1E+02 0.0022 17.1 4.6 27 32-60 10-36 (53)
484 KOG2066 Vacuolar assembly/sort 31.1 4.2E+02 0.0092 24.3 8.5 155 65-235 363-536 (846)
485 PF11768 DUF3312: Protein of u 30.7 3.7E+02 0.0079 23.5 10.1 94 26-120 411-505 (545)
486 smart00638 LPD_N Lipoprotein N 30.7 3.7E+02 0.008 23.5 19.0 62 22-88 309-370 (574)
487 PF05664 DUF810: Protein of un 30.6 3.9E+02 0.0085 24.2 8.1 69 17-85 211-290 (677)
488 COG2909 MalT ATP-dependent tra 30.3 4.6E+02 0.0099 24.5 19.1 200 35-238 427-652 (894)
489 COG5187 RPN7 26S proteasome re 30.3 2.8E+02 0.0062 22.1 10.6 23 167-189 118-140 (412)
490 COG2976 Uncharacterized protei 30.3 2.3E+02 0.005 21.0 10.8 129 23-159 54-189 (207)
491 COG0320 LipA Lipoate synthase 30.2 59 0.0013 25.3 2.8 51 35-89 192-242 (306)
492 COG5210 GTPase-activating prot 30.2 3.6E+02 0.0077 23.2 10.9 61 42-102 361-421 (496)
493 PRK12928 lipoyl synthase; Prov 29.9 2E+02 0.0043 22.7 5.8 50 141-194 183-232 (290)
494 COG2147 RPL19A Ribosomal prote 29.6 79 0.0017 21.9 3.0 45 185-236 104-148 (150)
495 PF12554 MOZART1: Mitotic-spin 29.5 1E+02 0.0022 16.8 3.1 27 172-198 12-38 (48)
496 PRK12928 lipoyl synthase; Prov 29.3 1.6E+02 0.0034 23.3 5.1 60 168-236 175-234 (290)
497 cd08318 Death_NMPP84 Death dom 29.0 1.2E+02 0.0025 18.8 3.6 41 74-116 46-86 (86)
498 PHA03100 ankyrin repeat protei 28.9 3.5E+02 0.0077 22.8 10.7 13 10-22 50-62 (480)
499 PF13934 ELYS: Nuclear pore co 28.5 2.6E+02 0.0056 21.1 10.1 122 86-223 72-195 (226)
500 KOG4234 TPR repeat-containing 28.4 2.6E+02 0.0056 21.0 9.8 87 33-122 105-197 (271)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-45 Score=322.29 Aligned_cols=237 Identities=20% Similarity=0.261 Sum_probs=136.9
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK--VRCDPNERTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 79 (248)
|++++|.++|++|.+.|+.||..+||++|.+|++.|++++|.++|++|.+ .|+.||..||+++|.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 44445555555555445555555555555555555555555555555533 3445555555555555555555555555
Q ss_pred HHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 80 QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 80 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
+|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+ +.+.|+++.|.+++++|.+.|
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a-~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV-AGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHcC
Confidence 5555555555555555555555555555555555555555555555555555555555 445555566666666666666
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCCC
Q 039342 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239 (248)
Q Consensus 160 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~~ 239 (248)
+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+| .+|++.|++++|.+++++|++.|+.|+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI-----~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI-----TALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 66666666666666666666666666666666666666666666666 6667777777777777777777777766
Q ss_pred CCccc
Q 039342 240 LPQLA 244 (248)
Q Consensus 240 ~~~~~ 244 (248)
.++..
T Consensus 755 ~Ty~s 759 (1060)
T PLN03218 755 ITYSI 759 (1060)
T ss_pred HHHHH
Confidence 65543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-45 Score=320.48 Aligned_cols=235 Identities=18% Similarity=0.285 Sum_probs=147.2
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|
T Consensus 486 G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf 565 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHH--CCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 82 QEIKS--SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 82 ~~m~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
++|.+ .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+ |.+.|++++|..+|++|.+.|
T Consensus 566 ~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a-y~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS-CSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcC
Confidence 66653 455566666666666666666666666666666666666666666666655 455556666666666666666
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCCC
Q 039342 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239 (248)
Q Consensus 160 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~~ 239 (248)
+.||..+|+++|++|++.|++++|.+++++|.+.|+.||..+|+.++ .+|++.|++++|.++|++|.+.|+.|+.
T Consensus 645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI-----~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-----GACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 66666666666666666666666666666666666666666666666 6666667777777777777666666655
Q ss_pred CCc
Q 039342 240 LPQ 242 (248)
Q Consensus 240 ~~~ 242 (248)
.++
T Consensus 720 vty 722 (1060)
T PLN03218 720 STM 722 (1060)
T ss_pred HHH
Confidence 444
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.3e-41 Score=287.77 Aligned_cols=216 Identities=17% Similarity=0.299 Sum_probs=190.3
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
+|++++|.++|++|.+ +|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++
T Consensus 272 ~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 272 CGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred CCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 5888999999998864 788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCC
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 160 (248)
+++|.+.|+.||..+|++||++|++.|++++|.++|++|.+ |+..+|+.++.+ |.+.|+.++|.++|++|.+.|+
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~-y~~~G~~~~A~~lf~~M~~~g~ 422 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAG-YGNHGRGTKAVEMFERMIAEGV 422 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHH-HHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999998853 677888888888 7788888999999999998899
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH-CCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHH
Q 039342 161 GLGMRFYNALLEALWCLGLRERAARVLDEATK-RGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230 (248)
Q Consensus 161 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m 230 (248)
.||..||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++ .+|++.|++++|.+++++|
T Consensus 423 ~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li-----~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI-----ELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH-----HHHHhcCCHHHHHHHHHHC
Confidence 99999999999999999999999999999875 68899988888888 7888888888888877654
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=284.79 Aligned_cols=173 Identities=17% Similarity=0.186 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccc
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF 139 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~ 139 (248)
+|++||.+|++.|++++|.++|++|.+ +|..+||+||.+|++.|++++|+++|++|.+.|+.|+..||+.++.+ |
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a-~ 335 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI-F 335 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H
Confidence 334444555555555555555555532 34555555555555555555555555555555555555555555555 4
Q ss_pred cccchHHHHHHHHHHHHhcCCCC-------------------------------CHHHHHHHHHHHHhcCchHHHHHHHH
Q 039342 140 DDESNWQMVEYVFDKLNCEGYGL-------------------------------GMRFYNALLEALWCLGLRERAARVLD 188 (248)
Q Consensus 140 ~~~~~~~~a~~~~~~m~~~~~~p-------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~ 188 (248)
.+.+.++.+.+++..|.+.|+.| |..+||++|.+|++.|+.++|.++|+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444555555555555555444 44455555555555555555555555
Q ss_pred HHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHH-HHHcCCCCCc
Q 039342 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE-MFMMGEDLPQ 242 (248)
Q Consensus 189 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~-~~~~~~~~~~ 242 (248)
+|.+.|+.||..||+.++ .+|++.|.++++.++|+.|.+ .|+.|+..+|
T Consensus 416 ~M~~~g~~Pd~~T~~~ll-----~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVL-----SACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred HHHHhCCCCCHHHHHHHH-----HHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 555555555555555555 455555555555555555543 3555544443
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.8e-40 Score=287.24 Aligned_cols=241 Identities=14% Similarity=0.127 Sum_probs=204.7
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
+|++++|+++|.+|.+.|+.||..||+++|.+|++.|+.+.+.+++..|.+.|+.||..+||++|.+|++.|++++|.++
T Consensus 266 ~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 345 (857)
T PLN03077 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHH
Confidence 47788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCC
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 160 (248)
|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.|+..+|..++.+ +...|+++.+.++++.|.+.|+
T Consensus 346 f~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a-~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 346 FSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA-CACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred HhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH-HhccchHHHHHHHHHHHHHhCC
Confidence 88886 368888999999999999999999999999999999999999999987 7788888999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC------------------------------CCCCCcchhhhHH----
Q 039342 161 GLGMRFYNALLEALWCLGLRERAARVLDEATKR------------------------------GLFPELFRHNKLV---- 206 (248)
Q Consensus 161 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------------g~~p~~~t~~~li---- 206 (248)
.|+..+||++|++|++.|++++|.++|++|.+. ++.||..||+.++
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACA 500 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHh
Confidence 888888888888888888888888887776542 4567766666554
Q ss_pred --------------------------------------------------------hhhhhhccccchHHHHHHHHHHHH
Q 039342 207 --------------------------------------------------------WSVDVHRMWEGGAYTAISVWLNKM 230 (248)
Q Consensus 207 --------------------------------------------------------~~~~~~~~~~~g~~~~~~~~~~~m 230 (248)
|+.++.+|++.|+.++|.++|++|
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455668888999999999999999
Q ss_pred HHHHHcCCCCCccccc
Q 039342 231 YEMFMMGEDLPQLATV 246 (248)
Q Consensus 231 ~~~~~~~~~~~~~~~i 246 (248)
.+.|+.||..|+...|
T Consensus 581 ~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 581 VESGVNPDEVTFISLL 596 (857)
T ss_pred HHcCCCCCcccHHHHH
Confidence 9999999998886543
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.3e-39 Score=282.60 Aligned_cols=230 Identities=11% Similarity=0.159 Sum_probs=186.6
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|+++|++|...|+.||..||+++|.+|++.+++..+.+++..|.+.|+.||..+||++|.+|++.|+++.|.++|
T Consensus 166 g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 56666777777776666667766666666666666666666666666666666677777777778888888888888888
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+ +...++++.+.+++..|.+.|+.
T Consensus 246 ~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a-~~~~g~~~~a~~l~~~~~~~g~~ 320 (857)
T PLN03077 246 DRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA-CELLGDERLGREMHGYVVKTGFA 320 (857)
T ss_pred hcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHhcCChHHHHHHHHHHHHhCCc
Confidence 88763 67788888888888888888888888888888888998899888888 67778888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCCCCC
Q 039342 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLP 241 (248)
Q Consensus 162 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~ 241 (248)
||..+||++|.+|++.|++++|.++|++|. .||..+|+.++ .+|++.|++++|.++|++|++.|+.|+..+
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li-----~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t 391 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMI-----SGYEKNGLPDKALETYALMEQDNVSPDEIT 391 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHH-----HHHHhCCCHHHHHHHHHHHHHhCCCCCcee
Confidence 888888888888888888888888888885 47788888888 888999999999999999999999998887
Q ss_pred cccc
Q 039342 242 QLAT 245 (248)
Q Consensus 242 ~~~~ 245 (248)
+...
T Consensus 392 ~~~l 395 (857)
T PLN03077 392 IASV 395 (857)
T ss_pred HHHH
Confidence 7554
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=6.3e-17 Score=131.12 Aligned_cols=230 Identities=14% Similarity=0.134 Sum_probs=167.1
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE----RTLEAVLSVYCFAGLVDES 77 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a 77 (248)
|++++|+++|+++.+.. +++..+++.+...+.+.|++++|.+.++.+.+.+-.++. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 67788888888887642 245677888888888888888888888888765433221 2345566677788888888
Q ss_pred HHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHh
Q 039342 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC 157 (248)
Q Consensus 78 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 157 (248)
...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......++..+... +...|+++.|...++.+.+
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC-YQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Confidence 88888887653 224567777888888888899999888888765422223344455444 6677888999998888877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcC
Q 039342 158 EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMG 237 (248)
Q Consensus 158 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~ 237 (248)
.. |+...+..+...+.+.|++++|..+++++.+. .|+..+++.++...+. ....|+.+++..++++|.+.++.|
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~--~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLA--EAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhh--ccCCccchhHHHHHHHHHHHHHhC
Confidence 63 56666788888999999999999999988765 6887777776632221 122567888888999999998888
Q ss_pred CCC
Q 039342 238 EDL 240 (248)
Q Consensus 238 ~~~ 240 (248)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 665
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.76 E-value=5.5e-16 Score=125.63 Aligned_cols=223 Identities=14% Similarity=0.135 Sum_probs=107.5
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN---ERTLEAVLSVYCFAGLVDESK 78 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~ 78 (248)
|++++|.+.|.++.+.+. .+..+|..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|++++|.
T Consensus 49 ~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred CChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555555554321 2334455555555555555555555555544321111 123444444555555555555
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------------------------------
Q 039342 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS--------------------------------- 125 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------------------------------- 125 (248)
.+|+++.+.. +++..+++.+...+.+.|++++|.+.++.+.+.+..
T Consensus 128 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 128 ELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5555544321 123344444444444445555554444444433211
Q ss_pred ----chHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcch
Q 039342 126 ----NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201 (248)
Q Consensus 126 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 201 (248)
|+.......+...+...|+++.|..+++++.+.+......+++.+..+|...|++++|...++++.+. .|+...
T Consensus 207 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~ 284 (389)
T PRK11788 207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADL 284 (389)
T ss_pred HhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchH
Confidence 22221112222224445556666666666555432222345556666666666666666666666553 344433
Q ss_pred hhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 202 HNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 202 ~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
+..+. ..+.+.|++++|.++++++.+.
T Consensus 285 ~~~la-----~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 285 LLALA-----QLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHH-----HHHHHhCCHHHHHHHHHHHHHh
Confidence 33333 5556666777777766666554
No 9
>PF13041 PPR_2: PPR repeat family
Probab=99.67 E-value=2.4e-16 Score=88.64 Aligned_cols=50 Identities=28% Similarity=0.559 Sum_probs=35.9
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 70 (248)
||+.+||++|++|++.|++++|.++|++|++.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 66777777777777777777777777777777777777777777777654
No 10
>PF13041 PPR_2: PPR repeat family
Probab=99.64 E-value=7.9e-16 Score=86.49 Aligned_cols=50 Identities=34% Similarity=0.596 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh
Q 039342 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105 (248)
Q Consensus 56 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 105 (248)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.63 E-value=2.3e-13 Score=120.99 Aligned_cols=217 Identities=14% Similarity=0.054 Sum_probs=109.1
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.++|+++.+.. +.+..++..+...+...|++++|.++++.+.+.+ +++...+..+...+.+.|++++|.+.|
T Consensus 649 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 649 KNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55666666666665432 1235556666666666666666666666655443 334445555555555555555555555
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
+.+.+.+ |+..++..+...+.+.|++++|...++++.+.. |+.......+...+...|+++.|...|+.+.+...
T Consensus 727 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p- 801 (899)
T TIGR02917 727 RKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP- 801 (899)
T ss_pred HHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-
Confidence 5555432 333444445555555555555555555544432 22222222222223444444555555544444321
Q ss_pred CCHH---------------------------------HHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhh
Q 039342 162 LGMR---------------------------------FYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS 208 (248)
Q Consensus 162 p~~~---------------------------------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 208 (248)
++.. ++..+...+...|++++|.++++++.+.+-. +..++..+.
T Consensus 802 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~-- 878 (899)
T TIGR02917 802 DNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLA-- 878 (899)
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHH--
Confidence 2333 3444455555566666666666666554321 444444444
Q ss_pred hhhhccccchHHHHHHHHHHHHH
Q 039342 209 VDVHRMWEGGAYTAISVWLNKMY 231 (248)
Q Consensus 209 ~~~~~~~~~g~~~~~~~~~~~m~ 231 (248)
..+.+.|+.++|..++++|.
T Consensus 879 ---~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 879 ---LALLATGRKAEARKELDKLL 898 (899)
T ss_pred ---HHHHHcCCHHHHHHHHHHHh
Confidence 45555666666666666554
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.60 E-value=1.1e-12 Score=116.73 Aligned_cols=86 Identities=12% Similarity=0.028 Sum_probs=38.9
Q ss_pred cccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchH
Q 039342 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGA 219 (248)
Q Consensus 140 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~ 219 (248)
...|+++.|...++.+...+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+. ..+...|+
T Consensus 714 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la-----~~~~~~g~ 785 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALA-----ELYLAQKD 785 (899)
T ss_pred HHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH-----HHHHHCcC
Confidence 33444444444444444432 222344444445555555555555555444321 11222222222 44455566
Q ss_pred HHHHHHHHHHHHHH
Q 039342 220 YTAISVWLNKMYEM 233 (248)
Q Consensus 220 ~~~~~~~~~~m~~~ 233 (248)
.++|...++++.+.
T Consensus 786 ~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 786 YDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666554
No 13
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.59 E-value=6.2e-14 Score=117.15 Aligned_cols=217 Identities=17% Similarity=0.095 Sum_probs=155.3
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 039342 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG 88 (248)
Q Consensus 9 ~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 88 (248)
.++..+...|+.|+..||.++|.-||..|+.+.|- +|.-|+-...+.+...|+.++.+..++++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 56778899999999999999999999999999998 9999988887777788888888888887777766
Q ss_pred CCcCHhhHHHHHHHHHhcCCHHH---HHHHHHHH----HHCCCCchHHhHHHHhccc-------------ccccchH---
Q 039342 89 ILPSVMCYCMLLAVYAKSNRWDD---AYGLLDEM----HTNRISNIHQVTGQMIKGE-------------FDDESNW--- 145 (248)
Q Consensus 89 ~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m----~~~~~~~~~~~~~~~l~~~-------------~~~~~~~--- 145 (248)
.|.+.||..|..+|..+|++.. +.+.+..+ ...|+-.....+...+..+ ....|.|
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5777788888888888887544 22212111 1122211111111110000 0001111
Q ss_pred ---------------------------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 146 ---------------------------QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 146 ---------------------------~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
.-.+++....+...-.|++.+|.+++..-...|+.+.|..++.+|++.|++.+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 12222333333332269999999999999999999999999999999999999
Q ss_pred cchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 039342 199 LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQLAT 245 (248)
Q Consensus 199 ~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~~~ 245 (248)
.+-|-.|+ -| .+...-++.++..|++.|+.|+..|+...
T Consensus 239 ~HyFwpLl-----~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 239 AHYFWPLL-----LG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred cccchhhh-----hc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 88888777 44 66667788899999999999999887643
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1.1e-12 Score=102.03 Aligned_cols=167 Identities=15% Similarity=0.208 Sum_probs=119.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHH
Q 039342 20 ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99 (248)
Q Consensus 20 ~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 99 (248)
+.+..+|.+||.++|+-...+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|.+..+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 35678899999999998888899999888888888888888888887654332 27788888888888888888888
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc----CCCC----CHHHH
Q 039342 100 LAVYAKSNRWDD----AYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE----GYGL----GMRFY 167 (248)
Q Consensus 100 i~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p----~~~~~ 167 (248)
+++.++.|+++. |.+++.+|.+-|+.|...+|+.+|...+...+....+..+..++... .++| |...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 888888887654 56778888888888888888888887554444434444444443321 2222 34445
Q ss_pred HHHHHHHHhcCchHHHHHHHHHH
Q 039342 168 NALLEALWCLGLRERAARVLDEA 190 (248)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~m 190 (248)
...+..|.+..+.+.|.++-.-+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll 382 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLL 382 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 56666666666666666655443
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=2e-12 Score=100.60 Aligned_cols=179 Identities=16% Similarity=0.204 Sum_probs=135.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChh-HHHHHHHHHHHCC------------
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV--YCFAGLVD-ESKEQFQEIKSSG------------ 88 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~g~~~-~a~~~~~~m~~~~------------ 88 (248)
.+=|.|+.. ...|.+..+.-+|+.|++.|++.+...--.|+.. |....++- .-.+-|-.|...|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 455555544 4567788888899999999988887666655543 22222221 1112222222211
Q ss_pred -------CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 89 -------ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 89 -------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
.+-+..+|.+||.++|+-...+.|.+++++-.....+.+..+|+.+|... .+....+++.+|....++
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~-----S~~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGAS-----SYSVGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHH-----HhhccHHHHHHHHHhhcC
Confidence 12367899999999999999999999999999999999999999998752 233447899999999999
Q ss_pred CCHHHHHHHHHHHHhcCchHH----HHHHHHHHHHCCCCCCcchhhhHHhh
Q 039342 162 LGMRFYNALLEALWCLGLRER----AARVLDEATKRGLFPELFRHNKLVWS 208 (248)
Q Consensus 162 p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~li~~ 208 (248)
||..|||+++++.++.|+++. |.+++.+|++-|++|...+|..+|..
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~ 321 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKN 321 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHH
Confidence 999999999999999998775 56788899999999999999999943
No 16
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.42 E-value=2.7e-12 Score=99.47 Aligned_cols=214 Identities=19% Similarity=0.168 Sum_probs=76.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|+++.|.+.++++...+.. ++..+..++.. ...+++++|.+++....+. .++...+..++..+.+.++++++.+++
T Consensus 58 ~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 4555666666666554332 44455555555 5666666666666554333 245555666666677777777777777
Q ss_pred HHHHHC-CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHh-HHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 82 QEIKSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV-TGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 82 ~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
+.+.+. ...++...|..+...+.+.|+.++|++.+++..+.. |+... ...++.. +...|+.+.+..+++......
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~-li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWL-LIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHH-HCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHH-HHHCCChHHHHHHHHHHHHHC
Confidence 776543 233455666666677777777777777777766543 44333 3333333 555666666666666665553
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC-cchhhhHHhhhhhhccccchHHHHHHHHHHHH
Q 039342 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230 (248)
Q Consensus 160 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m 230 (248)
..|...+..+..++...|+.++|..+|++..+. .|+ ...... ....+...|+.++|.++..+.
T Consensus 211 -~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~-----~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 211 -PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLA-----YADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHH-----HHHHHT---------------
T ss_pred -cCHHHHHHHHHHHhccccccccccccccccccc--cccccccccc-----ccccccccccccccccccccc
Confidence 334455666677777777777777777776542 332 222222 225566677777776665544
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.42 E-value=2.7e-10 Score=98.02 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHH
Q 039342 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227 (248)
Q Consensus 148 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~ 227 (248)
|...++...+.... +...+..+...+...|++++|...+++..+. .|+.. .++..+...+.+.|++++|...+
T Consensus 269 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~----~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 269 AAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLP----YVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH----HHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555554443221 3445555566666666666666666665542 34321 11112224455556666666655
Q ss_pred HHHHH
Q 039342 228 NKMYE 232 (248)
Q Consensus 228 ~~m~~ 232 (248)
+.+.+
T Consensus 342 ~~al~ 346 (656)
T PRK15174 342 VQLAR 346 (656)
T ss_pred HHHHH
Confidence 55544
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=5e-10 Score=83.84 Aligned_cols=203 Identities=8% Similarity=-0.023 Sum_probs=155.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 45678888999999999999999999987653 3456788889999999999999999999988764 235677888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchH
Q 039342 102 VYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 181 (248)
.+...|++++|...+++..+....+........+...+...|+++.|...++...+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 999999999999999999875433333222222333366778899999999988776432 4667888899999999999
Q ss_pred HHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 182 RAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 182 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
+|...+++..+. .+.+...+..+. ..+...|+.+++..+.+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGI-----RIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHH-----HHHHHHhhHHHHHHHHHHHHhh
Confidence 999999998875 222323332222 5566788999988887776553
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.38 E-value=5.9e-10 Score=95.90 Aligned_cols=191 Identities=10% Similarity=0.011 Sum_probs=124.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHH-
Q 039342 33 FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD- 111 (248)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~- 111 (248)
+...|++++|...++.+.+..-.++...+..+..++.+.|++++|...+++..+.. +.+...+..+-..+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhh
Confidence 44555555555555555443322333344444556666667777777776666543 2245566667777777777764
Q ss_pred ---HHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 039342 112 ---AYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLD 188 (248)
Q Consensus 112 ---a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 188 (248)
|...|++..+.. |+.......+...+...|+++.|...++...+.... +...+..+..++.+.|++++|...++
T Consensus 266 ~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 266 KLQAAEHWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred HHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 677777766543 544433333344466778999999999998876433 45667778899999999999999999
Q ss_pred HHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 189 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
.+.+. .|+...+.. .....+...|+.++|...+++..+.
T Consensus 343 ~al~~--~P~~~~~~~----~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 343 QLARE--KGVTSKWNR----YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHh--CccchHHHH----HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 98865 455322211 1124567889999999999887665
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=4e-12 Score=98.50 Aligned_cols=227 Identities=15% Similarity=0.122 Sum_probs=94.5
Q ss_pred CCchHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039342 1 GGLYKECQAILSRMSESGVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 79 (248)
.|++++|++++........+| +..-|..+-..+...++++.|.+.++++...+-. +...+..++.. ...+++++|.+
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccc
Confidence 378999999996654433234 4445555555666789999999999999876543 56677777777 79999999999
Q ss_pred HHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 80 QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 80 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
++...-+. .++...+...+..+.+.++++++.+++++.....-.+....+......++...|+++.|...++...+..
T Consensus 99 ~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 99 LAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred cccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99876554 3567778889999999999999999999987654445555555555555788999999999999988875
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCCC
Q 039342 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239 (248)
Q Consensus 160 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~~ 239 (248)
.. |....+.++..+...|+.+++.+++....+.. +.|...+..+. .++...|+.++|..++++..+. .|++
T Consensus 177 P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la-----~~~~~lg~~~~Al~~~~~~~~~--~p~d 247 (280)
T PF13429_consen 177 PD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALA-----AAYLQLGRYEEALEYLEKALKL--NPDD 247 (280)
T ss_dssp TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHH-----HHHHHHT-HHHHHHHHHHHHHH--STT-
T ss_pred CC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHH-----HHhccccccccccccccccccc--cccc
Confidence 33 57778899999999999999999998887653 34444444454 6778899999999999997664 5544
Q ss_pred C
Q 039342 240 L 240 (248)
Q Consensus 240 ~ 240 (248)
+
T Consensus 248 ~ 248 (280)
T PF13429_consen 248 P 248 (280)
T ss_dssp H
T ss_pred c
Confidence 3
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.37 E-value=1.1e-09 Score=93.96 Aligned_cols=224 Identities=13% Similarity=0.017 Sum_probs=163.5
Q ss_pred CchHHHHHHHHHHHHcC-CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHH
Q 039342 2 GLYKECQAILSRMSESG-VAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN-ERTLEAVLSVYCFAGLVDESK 78 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g-~~~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~ 78 (248)
+++++|.+.|+...+.+ ..| ....|+.+-..+...|++++|...+++..+. .|+ ...|..+...+...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 46889999999888754 233 4567888888888999999999999998765 344 567888888899999999999
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc
Q 039342 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
..|++..+.. +.+..+|..+-..+...|++++|...|++..+.. |+.......+...+...|+++.|...++.....
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999987753 2256788889999999999999999999988664 554444444444467788899999999988765
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCc--chhhhH-HhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 159 GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL--FRHNKL-VWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 159 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~l-i~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
. +-+...++.+...+...|++++|.+.|++..+. .|+. ...+.. +.......+...|++++|..++++..+.
T Consensus 463 ~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 463 F-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred C-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3 225678888999999999999999999987754 2221 111111 1111111222357888887777765543
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.36 E-value=1.2e-09 Score=93.76 Aligned_cols=219 Identities=12% Similarity=0.003 Sum_probs=163.4
Q ss_pred CchHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARN-SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~-~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
|++++|+..|++..+.. |+ ...|..+-..+...|++++|...|++..+.. +-+...|..+...+...|++++|...
T Consensus 345 g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 421 (615)
T TIGR00990 345 GKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKD 421 (615)
T ss_pred CCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78999999999987743 44 6688888899999999999999999987653 34578888999999999999999999
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCC
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 160 (248)
|++..+.. +.+...+..+...+.+.|++++|+..|++..+.. |+.......+...+...|+++.|...|+...+...
T Consensus 422 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 422 YQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 99988763 2256778888889999999999999999987643 54433333333336678899999999998776532
Q ss_pred CCCH------HHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcc-hhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 161 GLGM------RFYNALLEALWCLGLRERAARVLDEATKRGLFPELF-RHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 161 ~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
..+. ..++.....+...|++++|.+++++..+. .|+.. .+..+. ..+...|++++|.+++++..+.
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la-----~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMA-----QLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHH-----HHHHHccCHHHHHHHHHHHHHH
Confidence 2111 11222233344569999999999987764 45432 233333 7778899999999988887654
No 23
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=3.3e-09 Score=86.54 Aligned_cols=225 Identities=10% Similarity=-0.015 Sum_probs=134.0
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCChhHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY---CFAGLVDESK 78 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~---~~~g~~~~a~ 78 (248)
|+++.|.+.++.+.+... -+...+..+...+.+.|++++|.+.+..+.+.++.+.......-..++ ...+..+.+.
T Consensus 167 ~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 556666666666655431 244555566666666666666666666666555432221111111111 1111222222
Q ss_pred HHHHHHHHCC---CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHh--HHHHhcccccccchHHHHHHHHH
Q 039342 79 EQFQEIKSSG---ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV--TGQMIKGEFDDESNWQMVEYVFD 153 (248)
Q Consensus 79 ~~~~~m~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 153 (248)
+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.. |+... +..+........++.+.+...++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 2333332221 11266777778888889999999999999988764 33331 11222221223466677777777
Q ss_pred HHHhcCC-CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHH
Q 039342 154 KLNCEGY-GLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232 (248)
Q Consensus 154 ~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~ 232 (248)
...+... .|+.....++-..+.+.|++++|.+.|+........|+...+..+. ..+.+.|+.++|.+++++-..
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La-----~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA-----DAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHH
Confidence 7665422 2222556688899999999999999999655545578887777666 778899999999988887544
Q ss_pred HH
Q 039342 233 MF 234 (248)
Q Consensus 233 ~~ 234 (248)
.-
T Consensus 399 ~~ 400 (409)
T TIGR00540 399 LM 400 (409)
T ss_pred HH
Confidence 43
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.34 E-value=4.5e-09 Score=85.44 Aligned_cols=213 Identities=12% Similarity=0.007 Sum_probs=137.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFN--AVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 79 (248)
|+++.|.+.|.++.+. .|+...+. .....+...|+++.|.+.++++.+.. +-+...+..+...|.+.|++++|.+
T Consensus 132 g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 132 GDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred CCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 5666666666666542 23332222 22445566666666666666665544 3345556666667777777777776
Q ss_pred HHHHHHHCCCC-----------------------------------------cCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039342 80 QFQEIKSSGIL-----------------------------------------PSVMCYCMLLAVYAKSNRWDDAYGLLDE 118 (248)
Q Consensus 80 ~~~~m~~~~~~-----------------------------------------p~~~~~~~li~~~~~~~~~~~a~~~~~~ 118 (248)
++..+.+.+.. .++.....+..++...|+.++|.+++++
T Consensus 209 ~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~ 288 (398)
T PRK10747 209 ILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILD 288 (398)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666644322 1233444556666777888888888877
Q ss_pred HHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 119 m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
..+.. |+..... +.+ ....++.+.+....+...+... -|...+.++-+.+.+.+++++|.+.|+...+. .|+
T Consensus 289 ~l~~~--~~~~l~~--l~~-~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~ 360 (398)
T PRK10747 289 GLKRQ--YDERLVL--LIP-RLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPD 360 (398)
T ss_pred HHhcC--CCHHHHH--HHh-hccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 76632 3332211 111 1233667788888887776543 25667888899999999999999999998875 688
Q ss_pred cchhhhHHhhhhhhccccchHHHHHHHHHHHH
Q 039342 199 LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230 (248)
Q Consensus 199 ~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m 230 (248)
..+|..+- ..+.+.|+.+++...+++=
T Consensus 361 ~~~~~~La-----~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 361 AYDYAWLA-----DALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHH-----HHHHHcCCHHHHHHHHHHH
Confidence 87777666 7788899999987777644
No 25
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=2e-09 Score=80.57 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=148.2
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.
T Consensus 44 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 121 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQ 121 (234)
T ss_pred CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 378999999999987653 2357788889999999999999999999987764 34567788889999999999999999
Q ss_pred HHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-HhHHHHhcccccccchHHHHHHHHHHHHhc
Q 039342 81 FQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH-QVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 81 ~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
+++..+....| ....+..+...+...|++++|...+++..+.. |+. ..+..+. ..+...++++.|...+++..+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la-~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 122 FEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELA-ELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHH-HHHHHcCCHHHHHHHHHHHHHh
Confidence 99998653222 34567778888999999999999999987654 332 3333333 3366788899999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 159 GYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 159 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
...+...+..+...+...|+.+.|..+.+.+..
T Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 199 -YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred -CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344667777888889999999999999887754
No 26
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=1.7e-08 Score=85.53 Aligned_cols=218 Identities=9% Similarity=-0.025 Sum_probs=150.4
Q ss_pred chHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 039342 3 LYKECQAILSRMSESGVARN-SDSFNAVIEAFR---------QGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~g~~~~-~~~y~~li~~~~---------~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 72 (248)
++++|.+.|++..+. .|+ ...|..+-.++. ..+++++|...+++..+.+ +-+...+..+-..+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 467899999988764 354 445555544333 2345889999999987764 346677888888889999
Q ss_pred ChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHh-HHHHhcccccccchHHHHHHH
Q 039342 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV-TGQMIKGEFDDESNWQMVEYV 151 (248)
Q Consensus 73 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~ 151 (248)
++++|...|++..+.+ +.+...+..+-..+...|++++|...+++..+.. |.... ....... +...|++++|...
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~-~~~~g~~eeA~~~ 428 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWI-TYYHTGIDDAIRL 428 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHH-HHhccCHHHHHHH
Confidence 9999999999998764 2246678888889999999999999999988765 43322 1222222 2335678999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHH
Q 039342 152 FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMY 231 (248)
Q Consensus 152 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~ 231 (248)
+++.......-+...+..+-.++...|+.++|...+.++... .|+..+....+ ...|...| +++...++.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l----~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLL----YAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHH----HHHHhccH--HHHHHHHHHHH
Confidence 988776532224555677788888999999999999887554 44433332222 13445555 36666677766
Q ss_pred HHHH
Q 039342 232 EMFM 235 (248)
Q Consensus 232 ~~~~ 235 (248)
+..-
T Consensus 501 ~~~~ 504 (553)
T PRK12370 501 ESEQ 504 (553)
T ss_pred HHhh
Confidence 5433
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.22 E-value=1.8e-08 Score=89.59 Aligned_cols=182 Identities=9% Similarity=-0.028 Sum_probs=79.5
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|...|+++... +|+...+..+...+.+.|+.++|.+.++...+.+ +.+...+..+.....+.|++++|...+
T Consensus 523 Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 523 EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4445555555544321 2222333334444444555555555555544332 111122222222233335555555555
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
++..+. .|+...|..+-..+.+.|+.++|+..|++..+.. |+.......+...+...|++++|...++...+....
T Consensus 600 ~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 600 TRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 554433 2344445555555555555555555555544332 333333333332244444455555555544443221
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 162 LGMRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 162 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
+...+..+-.++...|++++|...+++..
T Consensus 676 -~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 676 -DPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444445555555555555555555544
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.20 E-value=2.8e-08 Score=80.83 Aligned_cols=186 Identities=10% Similarity=0.125 Sum_probs=126.2
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChhHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDS-FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE--AVLSVYCFAGLVDES 77 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~-y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~g~~~~a 77 (248)
.|++++|++.+....+.. +++.. |-....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 489999998888766542 22333 333344457899999999999999764 56654443 336688999999999
Q ss_pred HHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHH-------hHHHHhcccccccchHHHHHH
Q 039342 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ-------VTGQMIKGEFDDESNWQMVEY 150 (248)
Q Consensus 78 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 150 (248)
...++++.+.. +-+......+...|.+.|++++|.+++..+.+....++.. .+..++.. .....+.+....
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~-~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ-AMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH-HHHhcCHHHHHH
Confidence 99999998875 2267889999999999999999999999999887654332 11222222 111222344444
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 151 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
+++.+... .+.+......+...+...|+.++|.+++++..+.
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44443222 2335566666777777777777777777666553
No 29
>PF12854 PPR_1: PPR repeat
Probab=99.19 E-value=3.4e-11 Score=61.16 Aligned_cols=32 Identities=28% Similarity=0.626 Sum_probs=17.2
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039342 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM 49 (248)
Q Consensus 18 g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m 49 (248)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.18 E-value=3.6e-08 Score=87.78 Aligned_cols=216 Identities=15% Similarity=0.020 Sum_probs=151.0
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|+.++|...|.+.... .|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4566788877766553 255444333444456889999999999887543 455555667777888899999999999
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
++..+.. +++...+..+.....+.|++++|...+++..+.. |+...+..+- ..+.+.|++++|...++........
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA-~~l~~lG~~deA~~~l~~AL~l~Pd 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARA-TIYRQRHNVPAAVSDLRAALELEPN 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9888754 2233333334444456699999999999887655 5544444443 3377788899999999988877533
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCc-chhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL-FRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 162 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
+...++.+-.++...|+.++|.+.+++..+. .|+. ..+..+- ..+...|++++|...+++-.+.
T Consensus 642 -~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA-----~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 642 -NSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLA-----YVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH-----HHHHHCCCHHHHHHHHHHHHhc
Confidence 5667778888899999999999999987764 5542 2223333 5677889999998888877654
No 31
>PF12854 PPR_1: PPR repeat
Probab=99.18 E-value=3.4e-11 Score=61.14 Aligned_cols=32 Identities=41% Similarity=0.762 Sum_probs=15.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 039342 53 RCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84 (248)
Q Consensus 53 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 84 (248)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555554444
No 32
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.16 E-value=2.2e-07 Score=72.29 Aligned_cols=135 Identities=11% Similarity=-0.032 Sum_probs=93.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHH-HHhcCCCCCHHHHHHHH
Q 039342 93 VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK-LNCEGYGLGMRFYNALL 171 (248)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~~~~p~~~~~~~li 171 (248)
+..-.+++.-+.+.|+.++|.++..+-.+.+..|.... ++. +...++.+.-.+..+. +...+..| ..+.++-
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~~~--~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG 335 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---LIP--RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLG 335 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---HHh--hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHH
Confidence 44455556666777777777777777777665555222 221 2233344444444433 33445555 7788899
Q ss_pred HHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCCCCC
Q 039342 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLP 241 (248)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~ 241 (248)
+.|.+.+.|.+|.+.|+...+ ..|+..+|+.+- +.+.+.|+..++....++-.-.-.+|+.+.
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la-----~~~~~~g~~~~A~~~r~e~L~~~~~~~~~s 398 (400)
T COG3071 336 RLALKNKLWGKASEALEAALK--LRPSASDYAELA-----DALDQLGEPEEAEQVRREALLLTRQPNLPS 398 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHH-----HHHHHcCChHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999996655 489999999998 788899999999998888776666665543
No 33
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.12 E-value=9.7e-08 Score=84.00 Aligned_cols=224 Identities=11% Similarity=0.038 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHc-CCCCCHH-hH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHH
Q 039342 5 KECQAILSRMSES-GVARNSD-SF----NAVIEAFRQGGRFEEAIKAYVEMEKVRCD-PNERTLEAVLSVYCFAGLVDES 77 (248)
Q Consensus 5 ~~a~~~~~~m~~~-g~~~~~~-~y----~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a 77 (248)
++|++.++.+.+. ...|+.. .+ ...+..+...|++++|.+.|+.+.+.+-+ |+. .-..+..+|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 6788888888753 2223221 11 11144556779999999999999887632 432 222257789999999999
Q ss_pred HHHHHHHHHCCCCc---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CchHH--hHHHHhcccccc
Q 039342 78 KEQFQEIKSSGILP---SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-----------SNIHQ--VTGQMIKGEFDD 141 (248)
Q Consensus 78 ~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------~~~~~--~~~~~l~~~~~~ 141 (248)
..+|+++.+..... ....+..+..++...|++++|...++++.+..- .|+.. ....+....+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999987643111 134567777789999999999999999986531 12221 122233334667
Q ss_pred cchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcch-hhhHHhhhhhhccccchHH
Q 039342 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR-HNKLVWSVDVHRMWEGGAY 220 (248)
Q Consensus 142 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~g~~ 220 (248)
.|++++|..+++++..... -+...+..+...+...|+.++|.+.+++.... .|+... +-... ..+...|++
T Consensus 372 ~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a-----~~al~~~~~ 443 (765)
T PRK10049 372 SNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQA-----WTALDLQEW 443 (765)
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHH-----HHHHHhCCH
Confidence 7999999999999887643 35788889999999999999999999998774 576432 22222 356678899
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 039342 221 TAISVWLNKMYEMFMMGED 239 (248)
Q Consensus 221 ~~~~~~~~~m~~~~~~~~~ 239 (248)
++|+.+++++.+. .|+.
T Consensus 444 ~~A~~~~~~ll~~--~Pd~ 460 (765)
T PRK10049 444 RQMDVLTDDVVAR--EPQD 460 (765)
T ss_pred HHHHHHHHHHHHh--CCCC
Confidence 9999999999885 5543
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=5.3e-08 Score=82.56 Aligned_cols=216 Identities=13% Similarity=0.054 Sum_probs=149.1
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|...+++..+... -+...|..+-..+...|++++|...|++..+.+ +.+...+..+-.++...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 457899999999887542 367788888888899999999999999998765 345677888889999999999999999
Q ss_pred HHHHHCCCCcCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCC
Q 039342 82 QEIKSSGILPSV-MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160 (248)
Q Consensus 82 ~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 160 (248)
++..+.. |+. ..+..+...+...|++++|...+++..+.. .|+.......+..++...|+.++|...+..+.....
T Consensus 396 ~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 396 NECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 9998763 432 233444555677899999999999987653 244444444444446678999999999988755422
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC-CCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 161 GLGMRFYNALLEALWCLGLRERAARVLDEATKR-GLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 161 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
.+....+.+...|+..| ++|...++.+.+. .-.|.......++ |.-.|+-+.+..+ +++.+.
T Consensus 473 -~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 473 -TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV-------LVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred -hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH-------HHHHhhhHHHHHH-HHhhcc
Confidence 13344455666677777 4888877776542 2223222223333 3344555544444 666554
No 35
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.12 E-value=5.6e-08 Score=89.18 Aligned_cols=225 Identities=10% Similarity=-0.018 Sum_probs=146.1
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|++.|++..+... -+...+..+...|.+.|++++|...+++..+.. +-+...+..+...+.+.++.++|...+
T Consensus 475 g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 475 GKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 788999999999887542 256778888889999999999999999987543 223333322223334444444444444
Q ss_pred HHHHHC---------------------------------------CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 82 QEIKSS---------------------------------------GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 82 ~~m~~~---------------------------------------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
+.+... ..+++...+..+-..+.+.|+.++|+..|++..+.
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~ 632 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR 632 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 332110 11234556677788888889999999999988775
Q ss_pred CCCchH-HhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcch
Q 039342 123 RISNIH-QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201 (248)
Q Consensus 123 ~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 201 (248)
. |+. .....+... +...|++++|...++...+... .+..+...+..++...|++++|.++++.+....-......
T Consensus 633 ~--P~~~~a~~~la~~-~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 708 (1157)
T PRK11447 633 E--PGNADARLGLIEV-DIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSM 708 (1157)
T ss_pred C--CCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcch
Confidence 4 443 333344433 6677888999999987765422 2345566677788889999999999998876421111111
Q ss_pred hhhHHhhhhhhccccchHHHHHHHHHHHHHH
Q 039342 202 HNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232 (248)
Q Consensus 202 ~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~ 232 (248)
.+.++.......+...|+.++|...++.-..
T Consensus 709 ~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 709 ESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1233333233566788899999888776643
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=5.9e-08 Score=73.53 Aligned_cols=225 Identities=13% Similarity=0.093 Sum_probs=150.1
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHhcCChhHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNE--RTLEAVLSVYCFAGLVDES 77 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~--~t~~~ll~~~~~~g~~~~a 77 (248)
+++.++|.++|.+|.+... -+..+--+|-+.|-+.|.++.|+.+...+.++ +.+.+. ...-.|-.-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3577999999999987332 24556667888899999999999999998764 222221 1223455668899999999
Q ss_pred HHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhH---HHHhcccccccchHHHHHHHHHH
Q 039342 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT---GQMIKGEFDDESNWQMVEYVFDK 154 (248)
Q Consensus 78 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~ 154 (248)
+++|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+-.+...-+ .+=+.-......+.+.|..++..
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999987542 24567788999999999999999999998877655443322 22122213445566777777776
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 155 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
..+.+.+ .+..--.+-+.....|++..|.+.++...+.+-. |-..+-..+..+|...|+.++...++..+.+.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~-----yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPE-----YLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6655332 1222223445667777888888887777665322 23333333337777777777777666666554
No 37
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.06 E-value=1.4e-07 Score=86.61 Aligned_cols=117 Identities=10% Similarity=0.080 Sum_probs=86.7
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH------------------
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA------------------ 63 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~------------------ 63 (248)
|++++|++.|++..+... .+...+..+-..+...|++++|.+.|++..+.. +.+...+..
T Consensus 365 g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~ 442 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIA 442 (1157)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 678889999998877542 356677778888899999999999998887543 122222222
Q ss_pred ------------------------HHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039342 64 ------------------------VLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDE 118 (248)
Q Consensus 64 ------------------------ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~ 118 (248)
+...+...|++++|.+.|++..+.. | +...+..+...|.+.|++++|...+++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2233456788899999998887653 4 556777888899999999999999998
Q ss_pred HHHC
Q 039342 119 MHTN 122 (248)
Q Consensus 119 m~~~ 122 (248)
..+.
T Consensus 521 al~~ 524 (1157)
T PRK11447 521 LAQQ 524 (1157)
T ss_pred HHHc
Confidence 8654
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.02 E-value=7.6e-07 Score=72.82 Aligned_cols=188 Identities=13% Similarity=0.102 Sum_probs=129.5
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSD-SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER--TLEAVLSVYCFAGLVDES 77 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~-~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~g~~~~a 77 (248)
.|+++.|++.+....+.. |+.. .|-..-.+..+.|+.+.|.+.+.+..+.. |+.. ..-.....+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 489999999998877643 5433 33444566778899999999999986543 5443 334457888899999999
Q ss_pred HHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhccc--ccccchHHHHHHHHHHH
Q 039342 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE--FDDESNWQMVEYVFDKL 155 (248)
Q Consensus 78 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m 155 (248)
.+.++.+.+.. +-+..+...+...+...|++++|.+.+..+.+.+..+.......-.... ....+..+.....+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999874 2266789999999999999999999999999887554333211111110 00111111112223222
Q ss_pred HhcC---CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 156 NCEG---YGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 156 ~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
.+.. .+.+...+..+...+...|+.+.|.+++++..+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 2221 1236778888888899999999999999887765
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.01 E-value=2.3e-07 Score=81.64 Aligned_cols=191 Identities=13% Similarity=0.013 Sum_probs=144.5
Q ss_pred CchHHHHHHHHHHHHcCCC-CC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhH
Q 039342 2 GLYKECQAILSRMSESGVA-RN-SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP---NERTLEAVLSVYCFAGLVDE 76 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~-~~-~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~~~~ 76 (248)
|++++|++.|+.+.+.+.+ |+ ...+ +-..|...|++++|...|++..+..-.. .......+..++...|++++
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 6789999999999887632 33 2233 4668999999999999999987543111 13456667778899999999
Q ss_pred HHHHHHHHHHCCC-----------CcC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhccccccc
Q 039342 77 SKEQFQEIKSSGI-----------LPS---VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDE 142 (248)
Q Consensus 77 a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~ 142 (248)
|.++++.+.+... .|+ ...+..+...+...|+.++|+..++++.... |+.......+...+...
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhc
Confidence 9999999986521 123 2345677788899999999999999997664 65555554444457788
Q ss_pred chHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCc
Q 039342 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199 (248)
Q Consensus 143 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 199 (248)
|+++.|+..++....... -+...+......+...|++++|..+++++.+. .|+.
T Consensus 407 g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~ 460 (765)
T PRK10049 407 GWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQD 460 (765)
T ss_pred CCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCC
Confidence 999999999998887652 23566667777899999999999999999874 5653
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=1.4e-07 Score=77.64 Aligned_cols=216 Identities=12% Similarity=0.120 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------------------------
Q 039342 4 YKECQAILSRMSESGVARNS-DSFNAVIEAFRQGGRFEEAIKAYVEMEKVR----------------------------- 53 (248)
Q Consensus 4 ~~~a~~~~~~m~~~g~~~~~-~~y~~li~~~~~~~~~~~a~~~~~~m~~~~----------------------------- 53 (248)
.++|...|..+.+.- +|+ ....-+-.+|...+++++|.++|+..++..
T Consensus 335 ~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 345666666644322 222 334445556666667777777776665432
Q ss_pred ----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH
Q 039342 54 ----CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128 (248)
Q Consensus 54 ----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 128 (248)
-+-.+.||.++-++|.-.++.+.|.+.|++..+. .| ...+|+.+=.-++....+|.|..-|+..... .|.+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rh 488 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRH 488 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cchh
Confidence 1345577888888888888888888888887764 34 5677777777777778888888888765432 2332
Q ss_pred H-hHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHh
Q 039342 129 Q-VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW 207 (248)
Q Consensus 129 ~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 207 (248)
. .|..+ --.+.+.+.++.|+..|+...+-+.. +.+....+...+-+.|+.|+|++++++...- .|. +.+-.
T Consensus 489 YnAwYGl-G~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~k----n~l~~ 560 (638)
T KOG1126|consen 489 YNAWYGL-GTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPK----NPLCK 560 (638)
T ss_pred hHHHHhh-hhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCC----CchhH
Confidence 2 12222 22266777778888888776665443 5566667777778888888888888876542 222 11111
Q ss_pred hhhhhccccchHHHHHHHHHHHHHHH
Q 039342 208 SVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 208 ~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
--..+.+...++.++|...|+++++-
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 11113445667778888888887765
No 41
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.96 E-value=1.8e-06 Score=71.18 Aligned_cols=230 Identities=15% Similarity=0.180 Sum_probs=168.0
Q ss_pred CchHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARN-SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~-~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
|.+|.|.+.+++..+ +.|+ ...||.|-.++-..|++.+|.+.|++..... +--....+.|-..|...|.++.|..+
T Consensus 300 G~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred ccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHH
Confidence 788999999998877 3465 6799999999999999999999999987642 22346788899999999999999999
Q ss_pred HHHHHHCCCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 81 FQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 81 ~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
|....+. .|. ...+|.|-..|-..|++++|+.-+++... +.|+-.--..-+-..+...|+.+.|.+.+.+....+
T Consensus 377 y~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 377 YLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred HHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 9888774 343 56789999999999999999999998774 457654433334444778888999999888776643
Q ss_pred CCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcc-hhhhHHhhhhhhcccc--chHHHHHHHHHHHHHHHHH
Q 039342 160 YGLG-MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF-RHNKLVWSVDVHRMWE--GGAYTAISVWLNKMYEMFM 235 (248)
Q Consensus 160 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~--~g~~~~~~~~~~~m~~~~~ 235 (248)
|+ ...++.|-+.|-..|++.+|.+-|++..+ ++||.. .|..++.++-.-..+. ..++++...+.++-.++..
T Consensus 453 --Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~r 528 (966)
T KOG4626|consen 453 --PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNR 528 (966)
T ss_pred --cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhc
Confidence 43 56688899999999999999999998775 467653 2333432221111121 2344555555555554445
Q ss_pred cCCCCCc
Q 039342 236 MGEDLPQ 242 (248)
Q Consensus 236 ~~~~~~~ 242 (248)
-|.--|+
T Consensus 529 lpsvhP~ 535 (966)
T KOG4626|consen 529 LPSVHPH 535 (966)
T ss_pred CCccCcc
Confidence 5554443
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.93 E-value=5.9e-07 Score=78.70 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=75.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCcCHhhHHHHHHHH
Q 039342 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG-----ILPSVMCYCMLLAVY 103 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~ 103 (248)
.+-++.+.|++.++.+.|+.+...+.+.-..+-..+.++|...+++++|..+++++.... ..++......|.-+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 344455555555555555555555544333344555555555555555555555553321 112223344555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-------------CchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 039342 104 AKSNRWDDAYGLLDEMHTNRI-------------SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170 (248)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 170 (248)
..++++++|..+++++.+..- .|+-.....+....+...|+...|++.++.+..... -|......+
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~ 456 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIAL 456 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 555555555555555544110 012222222333334444555555555555544322 245555555
Q ss_pred HHHHHhcCchHHHHHHHHH
Q 039342 171 LEALWCLGLRERAARVLDE 189 (248)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~ 189 (248)
-+.+...|.+.+|.+.++.
T Consensus 457 A~v~~~Rg~p~~A~~~~k~ 475 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKA 475 (822)
T ss_pred HHHHHhcCCHHHHHHHHHH
Confidence 5555555555555555543
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.93 E-value=2.9e-08 Score=84.17 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=66.3
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHH
Q 039342 90 LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNA 169 (248)
Q Consensus 90 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 169 (248)
.|++.+|.+++..-..+|+.+.|..++.+|.+.|.+.+..-|+.++.+ .++...++.++..|.+.|+.|+..|+..
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g----~~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG----INAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc----CccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 477888888888888888888888888888888887777777777765 4556777777888888888888888887
Q ss_pred HHHHHHhcCc
Q 039342 170 LLEALWCLGL 179 (248)
Q Consensus 170 li~~~~~~g~ 179 (248)
-+..+.+.|.
T Consensus 277 yvip~l~N~~ 286 (1088)
T KOG4318|consen 277 YVIPQLSNGQ 286 (1088)
T ss_pred HHHhhhcchh
Confidence 7777776544
No 44
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.92 E-value=2.2e-06 Score=75.26 Aligned_cols=194 Identities=10% Similarity=0.005 Sum_probs=156.3
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChhH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-----CDPNERTLEAVLSVYCFAGLVDE 76 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~t~~~ll~~~~~~g~~~~ 76 (248)
|+..++.+.|+.+...|.+....+-..+-++|...+++++|..+|+...... ..++......|..+|...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 6789999999999998876667788899999999999999999999986543 23345556789999999999999
Q ss_pred HHHHHHHHHHCCC-----------CcC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhccccccc
Q 039342 77 SKEQFQEIKSSGI-----------LPS---VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDE 142 (248)
Q Consensus 77 a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~ 142 (248)
|..+++.+.+... .|+ ...+..++..++..|++.+|++.++++.... |.+.-+...........
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhc
Confidence 9999999987311 122 1345567888899999999999999997664 77766666666668889
Q ss_pred chHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcc
Q 039342 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200 (248)
Q Consensus 143 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 200 (248)
|.+..|+..++........ +..+......++...++++.|..+.+.+.+. .|+..
T Consensus 464 g~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 464 DLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred CCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 9999999999777666322 5677778888999999999999999988764 66643
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=2e-06 Score=65.44 Aligned_cols=186 Identities=14% Similarity=0.106 Sum_probs=132.7
Q ss_pred CchHHHHHHHHHHHHcCCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 039342 2 GLYKECQAILSRMSESGVARNS------DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~------~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 75 (248)
|.+|+|.++.+.+.++ ||. ...-.|-.-|...|-++.|+.+|..+.+.+. .-......|+..|-...+|+
T Consensus 83 GEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~ 158 (389)
T COG2956 83 GEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWE 158 (389)
T ss_pred chHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHH
Confidence 6788888888877653 432 2344456667788888889888888877552 33456677888888888899
Q ss_pred HHHHHHHHHHHCCCCcCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHH
Q 039342 76 ESKEQFQEIKSSGILPSV----MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYV 151 (248)
Q Consensus 76 ~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 151 (248)
+|.++-+++.+.+-.+.. .-|--+-..+....+++.|...+++..+.+ |+..--+.++-......|+++.|.+.
T Consensus 159 KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~ 236 (389)
T COG2956 159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEA 236 (389)
T ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHH
Confidence 988888888776544322 234455555556778888888888877665 44444444444445667888888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 152 FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 152 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
++...+.+..--..+...|..+|...|+.++....+..+.+.
T Consensus 237 ~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 237 LERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888888876666777788888888888888888887776653
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.87 E-value=7e-06 Score=64.16 Aligned_cols=194 Identities=15% Similarity=0.161 Sum_probs=146.0
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|+|.+|+++..+-.+.+-.| ...|-.-..+.-+.||.+.+-.++.+..+.--.++...+-+.-......|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 489999999999987776543 5667777888888999999999999987653356667777778888999999999999
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-------HhHHHHhcccccccchHHHHHHHHH
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH-------QVTGQMIKGEFDDESNWQMVEYVFD 153 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~ 153 (248)
.+++.+.+.. ++........+|.+.|++.....++..|.+.+.-.+. .++..++.. ....+..+.....++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q-~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ-ARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH-HhccccchHHHHHHH
Confidence 9999887533 6788999999999999999999999999998875443 334445554 222222233334444
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 154 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
..... .+-++..-.+++.-+..+|+.++|.++..+-.+++..|+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 43332 344556667788888888999999988888777766665
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=2.5e-06 Score=67.90 Aligned_cols=200 Identities=12% Similarity=0.108 Sum_probs=146.5
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|.+.+.+.....-......||+=+ .+-+.|+.++|++.|-++..- +..+....-.+.+.|-...+...|.++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 489999999999988654444444555443 356678999999999887432 234556677778888888899999988
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCC
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 160 (248)
+.+.... ++.|+...+.|-..|-+.|+-..|++.+-+--. -.+.+..+...+- ++|....-|+++...|+... =+
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~-ayyidtqf~ekai~y~ekaa--li 655 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLA-AYYIDTQFSEKAINYFEKAA--LI 655 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHH-HHHHhhHHHHHHHHHHHHHH--hc
Confidence 8766543 444788899999999999999999887654321 1233344444443 44777888899999988653 37
Q ss_pred CCCHHHHHHHHHHHHh-cCchHHHHHHHHHHHHCCCCCCcchhhhHHhh
Q 039342 161 GLGMRFYNALLEALWC-LGLRERAARVLDEATKRGLFPELFRHNKLVWS 208 (248)
Q Consensus 161 ~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 208 (248)
.|+..-|..+|..|.+ .|++.+|+++|++..++ ++-|..+...|+.-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri 703 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRI 703 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHH
Confidence 8999999999887765 79999999999998765 56676666666633
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=1.8e-07 Score=77.11 Aligned_cols=195 Identities=15% Similarity=0.068 Sum_probs=150.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHH--
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP-NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM-- 98 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-- 98 (248)
.+.+|.++-..|.-.++.+.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|+.... .|+..||+
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwY 493 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWY 493 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHH
Confidence 4678888888999999999999999998764 45 778999998889999999999999987664 45666665
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 039342 99 -LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL 177 (248)
Q Consensus 99 -li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 177 (248)
|--.|.+.++++.|+-.|+...+.+ |....+-.-+...+.+.+..++|.+++++......+ |+..--.-.+.+...
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSL 570 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhh
Confidence 4557889999999999999887654 777666665555577888899999999988776655 344444456777788
Q ss_pred CchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHH
Q 039342 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMY 231 (248)
Q Consensus 178 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~ 231 (248)
++.++|+..++++++ +.|+ +..+..++.+.|.+.|+.+.|..-|.-+.
T Consensus 571 ~~~~eal~~LEeLk~--~vP~----es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 571 GRYVEALQELEELKE--LVPQ----ESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred cchHHHHHHHHHHHH--hCcc----hHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 999999999999987 4776 44445555578888888887755444443
No 49
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.80 E-value=1.3e-08 Score=52.19 Aligned_cols=33 Identities=30% Similarity=0.644 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN 57 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 57 (248)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 50
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.77 E-value=5.4e-06 Score=64.78 Aligned_cols=182 Identities=13% Similarity=0.065 Sum_probs=95.6
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|+.++|...|++..+... .+...|+.+-..+...|++++|.+.|+...+.. +-+..+|..+..++...|++++|.+.|
T Consensus 78 g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~ 155 (296)
T PRK11189 78 GLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDL 155 (296)
T ss_pred CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 566666666666655332 245666666667777777777777776665432 123455556666666667777777777
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc-CC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE-GY 160 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~ 160 (248)
+...+. .|+..........+...++.++|...|.+..... .|+... ..+... + .++.... ..+..+.+. ..
T Consensus 156 ~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~~~-~--lg~~~~~-~~~~~~~~~~~~ 227 (296)
T PRK11189 156 LAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNIVEF-Y--LGKISEE-TLMERLKAGATD 227 (296)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHHHHH-H--ccCCCHH-HHHHHHHhcCCC
Confidence 666653 2332211222222334556677777665543222 121111 111111 1 1111111 122333221 11
Q ss_pred C----C-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 161 G----L-GMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 161 ~----p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
. | ....|..+-..+.+.|++++|...|++..+.
T Consensus 228 ~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 228 NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1 1 2346777778888888888888888887754
No 51
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=1.5e-07 Score=72.76 Aligned_cols=199 Identities=18% Similarity=0.214 Sum_probs=122.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHH
Q 039342 20 ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA-VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM 98 (248)
Q Consensus 20 ~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 98 (248)
.|.......+...+...++-+.+..-+++.......++..++.. .-..+...|+++.|.++++.- .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 45555554443333333445555555544433333333333333 335566789999998888642 36778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhccc---ccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039342 99 LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE---FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175 (248)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 175 (248)
.+..|.+.++++.|.+.++.|.+.+ +..+...+..++ ......++.|..+|+++.+. ..+++.+.|.+..+..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 9999999999999999999998764 333444443332 22334689999999998665 6678899999999999
Q ss_pred hcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
..|++++|.+++.+..+. .|+ -..+++ +...-..-.++..+.+.+++.+++..
T Consensus 213 ~~~~~~eAe~~L~~al~~--~~~--~~d~La-Nliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEK--DPN--DPDTLA-NLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC---CC--HHHHHH-HHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHh--ccC--CHHHHH-HHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999986543 232 122222 22222222233336677788887765
No 52
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.76 E-value=1.7e-08 Score=51.38 Aligned_cols=33 Identities=24% Similarity=0.506 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP 56 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 56 (248)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
No 53
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.73 E-value=2.3e-05 Score=61.24 Aligned_cols=220 Identities=10% Similarity=-0.047 Sum_probs=144.5
Q ss_pred chHHHHHHHHHHHHcC-CCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039342 3 LYKECQAILSRMSESG-VARN--SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~g-~~~~--~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 79 (248)
..+.+..-+.++.... ..|+ ...|..+-..+...|++++|...|++..+.. +.+...|+.+-..+...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456666777766432 2222 4567777788999999999999999987764 3467899999999999999999999
Q ss_pred HHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc
Q 039342 80 QFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 80 ~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
.|+...+. .| +..+|..+-..+...|++++|.+.|++..+.. |+... ..+........++.++|...+......
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPY-RALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999875 35 46778888888999999999999999988754 44331 111111133456788999988665433
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCC-CCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 159 GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG-LFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 159 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
. .|+... ..+ .....|+.+.+ +.+..+.+.- -.|...--..-.|..+-..+.+.|+.++|...+++-.+.
T Consensus 195 ~-~~~~~~-~~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 195 L-DKEQWG-WNI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred C-CccccH-HHH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 233221 122 22335555544 3455544321 111100001122333347788999999999999877654
No 54
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.73 E-value=2.4e-08 Score=50.84 Aligned_cols=33 Identities=36% Similarity=0.481 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCC
Q 039342 165 RFYNALLEALWCLGLRERAARVLDEATKRGLFP 197 (248)
Q Consensus 165 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 197 (248)
.+|+++|++|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
No 55
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.72 E-value=3e-08 Score=50.79 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCc
Q 039342 166 FYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199 (248)
Q Consensus 166 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 199 (248)
+||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999984
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.72 E-value=7.4e-06 Score=67.66 Aligned_cols=227 Identities=18% Similarity=0.173 Sum_probs=155.5
Q ss_pred CchHHHHHHHHHHHHc-----CC-CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSES-----GV-ARNS-DSFNAVIEAFRQGGRFEEAIKAYVEMEKV---RCDPN----ERTLEAVLSV 67 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~-----g~-~~~~-~~y~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~----~~t~~~ll~~ 67 (248)
|+++.|+.++.+..+. |. .|.+ ...+.+-..|...+++.+|..+|+++..- ..-++ ..+++.|-.+
T Consensus 213 g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~l 292 (508)
T KOG1840|consen 213 GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVL 292 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 7899999999976553 21 1232 23444666788899999999999998432 22222 3566777778
Q ss_pred HHhcCChhHHHHHHHHHHH---C--CCC-cCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCchH---HhHHHH
Q 039342 68 YCFAGLVDESKEQFQEIKS---S--GIL-PSV-MCYCMLLAVYAKSNRWDDAYGLLDEMHTN---RISNIH---QVTGQM 134 (248)
Q Consensus 68 ~~~~g~~~~a~~~~~~m~~---~--~~~-p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~---~~~~~~ 134 (248)
|.+.|++++|...+++..+ . |.. |.+ ..++.+...|...+++++|..+++...+. -..+++ .-+..-
T Consensus 293 y~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~n 372 (508)
T KOG1840|consen 293 YYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYAN 372 (508)
T ss_pred HhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 9999999999988877643 1 222 233 35777888889999999999998865332 222222 222333
Q ss_pred hcccccccchHHHHHHHHHHHHhc----CC--CC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHH--CCCCCCcc----h
Q 039342 135 IKGEFDDESNWQMVEYVFDKLNCE----GY--GL-GMRFYNALLEALWCLGLRERAARVLDEATK--RGLFPELF----R 201 (248)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~m~~~----~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~----t 201 (248)
+...+...|++++|.++++...+. +- .+ ....++.+-..|.+.+...+|.++|.+... .-+.|+.. +
T Consensus 373 l~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~ 452 (508)
T KOG1840|consen 373 LAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYT 452 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHH
Confidence 344477889999999999887543 11 22 245678888999999999999999987543 22334433 3
Q ss_pred hhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 202 HNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 202 ~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
|..|. ..|...|++++|+++.+.....
T Consensus 453 ~~nL~-----~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 453 YLNLA-----ALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHH-----HHHHHcccHHHHHHHHHHHHHH
Confidence 44444 7899999999999988877643
No 57
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.70 E-value=1.6e-06 Score=71.50 Aligned_cols=223 Identities=11% Similarity=0.106 Sum_probs=118.3
Q ss_pred CchHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 039342 2 GLYKECQAILSRMSESGVARN-SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN-ERTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~-~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~ 79 (248)
|++.+|.+-|++... +.|+ ...|-.|-..|...+.++.|...|.+.... .|+ ...|..+-..|...|.+|.|..
T Consensus 232 Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~ 307 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAID 307 (966)
T ss_pred chHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHH
Confidence 566667777766655 3344 456666666666667777766666665432 233 2445555555556666666666
Q ss_pred HHHHHHHCCCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------------------------CCc
Q 039342 80 QFQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR--------------------------------ISN 126 (248)
Q Consensus 80 ~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------------------------~~~ 126 (248)
.+++..+. .|+ ...|+.|-.++-..|++.+|.+.+.+...-. +.|
T Consensus 308 ~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p 385 (966)
T KOG4626|consen 308 TYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP 385 (966)
T ss_pred HHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence 66555543 232 3455566666655566666655555543322 112
Q ss_pred hHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCc-chhhh
Q 039342 127 IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG-MRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL-FRHNK 204 (248)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ 204 (248)
.-..-.+-+...+...|++++|...+++... +.|+ ...|+.+-..|-..|+.+.|.+.+.+.... .|.. ..++.
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsN 461 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSN 461 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhh
Confidence 2221112222224555556666655555443 3343 344555666666666666666666655442 3321 12223
Q ss_pred HHhhhhhhccccchHHHHHHHHHHHHHHHHHcCCCCC
Q 039342 205 LVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLP 241 (248)
Q Consensus 205 li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~ 241 (248)
|- ..|-..|++.+|..-+++-.+ +.||.+.
T Consensus 462 La-----si~kDsGni~~AI~sY~~aLk--lkPDfpd 491 (966)
T KOG4626|consen 462 LA-----SIYKDSGNIPEAIQSYRTALK--LKPDFPD 491 (966)
T ss_pred HH-----HHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence 33 566777887777776665443 3666544
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.69 E-value=2.9e-05 Score=56.58 Aligned_cols=198 Identities=11% Similarity=-0.032 Sum_probs=143.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVY 103 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~ 103 (248)
+.--|--+|...|+...|..-+++..+.. +-+..+|..+-..|-+.|+.+.|.+-|+...+. .| +..+.|..=..+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 45556678889999999999999987764 345578888888899999999999999888765 34 556777888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCchH-HhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHH
Q 039342 104 AKSNRWDDAYGLLDEMHTNRISNIH-QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182 (248)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 182 (248)
|..|++++|...|++-.....-+.. .++..+-. |..+.|+.+.++..|+.-.+.... ...+...+.+...+.|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~-Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGL-CALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH-HHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 8899999999999988776544333 23333332 355678888999998888776543 34456677888888999999
Q ss_pred HHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 183 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
|..+++.....+. ++..+.-..| +---..|+.+.+.++=..+.+.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~i-----riak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGI-----RIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHH-----HHHHHhccHHHHHHHHHHHHHh
Confidence 9999988877665 6655443333 4444567777777665555544
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.68 E-value=3.3e-05 Score=64.45 Aligned_cols=133 Identities=11% Similarity=0.062 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039342 96 YCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175 (248)
Q Consensus 96 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 175 (248)
+.-+-..|...|+.++|+..+++..+.. |+..-+..+-...+...|+++.|....+...+.+.. |-..=+-....+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 3444555666666666666666655443 444444443333355666666666666666655443 4444445556666
Q ss_pred hcCchHHHHHHHHHHHHCCCCCCcchhhhH-Hh--hhhhhccccchHHHHHHHHHHHHH
Q 039342 176 CLGLRERAARVLDEATKRGLFPELFRHNKL-VW--SVDVHRMWEGGAYTAISVWLNKMY 231 (248)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-i~--~~~~~~~~~~g~~~~~~~~~~~m~ 231 (248)
+.|+.++|.+++....+.+..|-...+..- +| .-.-.+|.+.|++..|.+.+....
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 667777777777666665553322221100 01 012355666666555555444433
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.66 E-value=4.9e-05 Score=55.43 Aligned_cols=197 Identities=14% Similarity=0.074 Sum_probs=153.2
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|+...|.+-+++..+... -+..+|..+-..|-+.|+.+.|.+-|++..+.. +-+-...|..-..+|..|++++|...
T Consensus 48 ~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA~q~ 125 (250)
T COG3063 48 QGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEEAMQQ 125 (250)
T ss_pred CCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHHHHHH
Confidence 4889999999999988542 357799999999999999999999999987653 23446778888889999999999999
Q ss_pred HHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 81 FQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 81 ~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
|++....-.-| -..+|..+.-+..+.|+.+.|...|++-.+..-.- ......+... ....|++-.|...++.....+
T Consensus 126 F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~-~~~~l~~a~~-~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 126 FERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF-PPALLELARL-HYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred HHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC-ChHHHHHHHH-HHhcccchHHHHHHHHHHhcc
Confidence 99988763333 34688888888899999999999999987664221 1222233333 334677888998998888876
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhh
Q 039342 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204 (248)
Q Consensus 160 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 204 (248)
. ++....-..|+.--+.|+.+.+-++=..+.+. .|...-|..
T Consensus 204 ~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 204 G-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred c-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 6 89999999999999999999998887777654 565544443
No 61
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.65 E-value=4.5e-05 Score=61.23 Aligned_cols=207 Identities=12% Similarity=0.058 Sum_probs=124.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CcCH--hhHHHHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGI-LPSV--MCYCMLLA 101 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~ 101 (248)
....+-..+...|++++|.+.+++..+.. +.+...+..+-..+...|++++|...+++..+... .|+. ..|-.+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33444556778899999999999987764 44566778888899999999999999988776422 2232 34557788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CchHHhH-HH-H-hc-----ccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039342 102 VYAKSNRWDDAYGLLDEMHTNRI-SNIHQVT-GQ-M-IK-----GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~-~~-~-l~-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 172 (248)
.+...|+.++|..++++...... .+..... .. . +. +.......|+.+........ .+ ............
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~-~~-~~~~~~~~~~a~ 272 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHF-PD-HGLAFNDLHAAL 272 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc-Cc-ccchHHHHHHHH
Confidence 88999999999999999754332 1111111 11 1 11 11111223333222211100 11 111122235677
Q ss_pred HHHhcCchHHHHHHHHHHHHCCCCC---CcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHH
Q 039342 173 ALWCLGLRERAARVLDEATKRGLFP---ELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234 (248)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~ 234 (248)
++...|+.+.|..+++.+......+ ........+..+..-.+...|+.++|.+.+..-...+
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7888999999999999887633221 1111122222222244567888888888877766554
No 62
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.62 E-value=1.3e-06 Score=56.22 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHCCCCcCHhh
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRC-DPNERTLEAVLSVYCFAGL--------VDESKEQFQEIKSSGILPSVMC 95 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g~--------~~~a~~~~~~m~~~~~~p~~~~ 95 (248)
|-...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+-++... .-..+.+|+.|...++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777777999999999999999999 8899999999988876542 4456778888888889999999
Q ss_pred HHHHHHHHHhc
Q 039342 96 YCMLLAVYAKS 106 (248)
Q Consensus 96 ~~~li~~~~~~ 106 (248)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99988887653
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.62 E-value=2.2e-05 Score=65.41 Aligned_cols=84 Identities=21% Similarity=0.230 Sum_probs=60.0
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-h-----cCCh
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC-F-----AGLV 74 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~-~-----~g~~ 74 (248)
+|++++|++.+..-... +.-....+...-..+.+.|+.++|..+|..+.+.+ |+...|-..+..+. - ....
T Consensus 17 ~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred CCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccH
Confidence 58999999999775543 32345666677788889999999999999998875 66666655444443 2 2246
Q ss_pred hHHHHHHHHHHHC
Q 039342 75 DESKEQFQEIKSS 87 (248)
Q Consensus 75 ~~a~~~~~~m~~~ 87 (248)
+...++++++.+.
T Consensus 94 ~~~~~~y~~l~~~ 106 (517)
T PF12569_consen 94 EKLLELYDELAEK 106 (517)
T ss_pred HHHHHHHHHHHHh
Confidence 7778888887654
No 64
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=1.4e-05 Score=63.90 Aligned_cols=172 Identities=13% Similarity=0.125 Sum_probs=141.0
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|++.|-.+... ..-++....-+-..|--..+...|.+++.+..+ -++.|+.+.+-|-..|-+.|+-..|.+.+
T Consensus 538 ~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 538 GNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred cCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhh
Confidence 7899999999887542 124677788888889889999999999877643 36778899999999999999998888776
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
=+--+. ++.+..+..=|-.-|....-+++++..|++.. -+.|+..-|..++.+++++.|+++.|..+++..... ++
T Consensus 616 ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fp 691 (840)
T KOG2003|consen 616 YDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FP 691 (840)
T ss_pred hhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-Cc
Confidence 443222 34477888888888888999999999999754 467999999999999999999999999999998765 66
Q ss_pred CCHHHHHHHHHHHHhcCc
Q 039342 162 LGMRFYNALLEALWCLGL 179 (248)
Q Consensus 162 p~~~~~~~li~~~~~~g~ 179 (248)
-|......|++.+...|.
T Consensus 692 edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 692 EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cchHHHHHHHHHhccccc
Confidence 788889999999887774
No 65
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.56 E-value=1e-06 Score=70.96 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=96.0
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhh
Q 039342 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV--RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMC 95 (248)
Q Consensus 18 g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 95 (248)
+.+.+......+++.+....+++.+..++-+++.. ....-..|.+++|+.|.+.|..+.+.++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44567778888888888888899999998888765 3333345667999999999999999999998888999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcc
Q 039342 96 YCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137 (248)
Q Consensus 96 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~ 137 (248)
||.||+.+.+.|++..|.++..+|...+...+..|....+.+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~ 182 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYS 182 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 999999999999999999999988777665555555444443
No 66
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=9.1e-05 Score=59.35 Aligned_cols=220 Identities=14% Similarity=0.034 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHH------------------
Q 039342 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC--DPNERTLEAV------------------ 64 (248)
Q Consensus 5 ~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~t~~~l------------------ 64 (248)
+++.+-.....+.|.+-+...-+-.-.+.-...|+++|+.+|++..+... --|..+|+.+
T Consensus 244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~ 323 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS 323 (559)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence 34444444444555533322222222233345677777777777766531 0133444443
Q ss_pred -------------HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhH
Q 039342 65 -------------LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131 (248)
Q Consensus 65 -------------l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 131 (248)
-+-|+-.++.++|...|++..+.+. -....|+.|=.-|....+...|.+-++...+.+ +.|-..|
T Consensus 324 ~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAW 401 (559)
T KOG1155|consen 324 NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAW 401 (559)
T ss_pred HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHH
Confidence 3445666788888888888877542 245678888888888888888988888877654 2334444
Q ss_pred HHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhh
Q 039342 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDV 211 (248)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 211 (248)
..+=.+ |...+...-|...|++..+... -|...|.+|-++|.+.++.++|.+.|......|-. +...+..|-
T Consensus 402 YGLGQa-Yeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~La----- 473 (559)
T KOG1155|consen 402 YGLGQA-YEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLA----- 473 (559)
T ss_pred hhhhHH-HHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHH-----
Confidence 444443 5555556667777777666432 37889999999999999999999999998765533 333344444
Q ss_pred hccccchHHHHHHHHHHHHHHHH
Q 039342 212 HRMWEGGAYTAISVWLNKMYEMF 234 (248)
Q Consensus 212 ~~~~~~g~~~~~~~~~~~m~~~~ 234 (248)
+.|-+.++..+|...+.+-.+..
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 67778888888888777766643
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=2.4e-05 Score=59.96 Aligned_cols=159 Identities=12% Similarity=0.015 Sum_probs=122.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhH-HHHHHHHHh
Q 039342 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLAVYAK 105 (248)
Q Consensus 27 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~ 105 (248)
+-+-.+|.+.|.+.+|...|+.-.+. .|-+.||-.|-+.|.+..++..|..++.+-.+. .|-.+|| .-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 45677888899999999998887665 466668888999999999999999999988775 4555554 456667777
Q ss_pred cCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 039342 106 SNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185 (248)
Q Consensus 106 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 185 (248)
.++.++|.+++++..+... .+...+.++-.+ +--.++++.|...++.+.+.|+. +...|+.+--+|.-.+++|.++-
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~-yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVG-YFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeec-cccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 8889999999998876541 222333333333 44567789999999999999987 78888888888888899998888
Q ss_pred HHHHHHH
Q 039342 186 VLDEATK 192 (248)
Q Consensus 186 ~~~~m~~ 192 (248)
-|.+...
T Consensus 380 sf~RAls 386 (478)
T KOG1129|consen 380 SFQRALS 386 (478)
T ss_pred HHHHHHh
Confidence 8887654
No 68
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.53 E-value=0.00011 Score=59.07 Aligned_cols=228 Identities=11% Similarity=0.031 Sum_probs=127.0
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHH---HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNA---VIEAFRQGGRFEEAIKAYVEMEKVRCDPN-ERTLEAVLSVYCFAGLVDES 77 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~---li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a 77 (248)
|++++|.+.+++..+.. +.+...+.. ........+....+.+.+.. .....|+ ......+-..+...|++++|
T Consensus 57 g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A 133 (355)
T cd05804 57 GDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRA 133 (355)
T ss_pred CCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 78888888888876643 223444442 11111223455555555544 1222333 33444556678888999999
Q ss_pred HHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-chHHh-HHHHhcccccccchHHHHHHHHHHH
Q 039342 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIHQV-TGQMIKGEFDDESNWQMVEYVFDKL 155 (248)
Q Consensus 78 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m 155 (248)
.+.+++..+.. +.+...+..+-..+...|++++|...+++....... |.... ....+..++...|+++.|..+++..
T Consensus 134 ~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 134 EEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999988764 234567788888888999999999999887654321 22211 1112223366778889999999887
Q ss_pred HhcCC-CCCHHHH-H--HHHHHHHhcCchHHHHHH--HHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHH
Q 039342 156 NCEGY-GLGMRFY-N--ALLEALWCLGLRERAARV--LDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNK 229 (248)
Q Consensus 156 ~~~~~-~p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~ 229 (248)
..... .+..... + .++.-+...|..+.+... ...............+..+ .....+...|+.+.+.++++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDL---HAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHH---HHHHHHhcCCCHHHHHHHHHH
Confidence 54322 2222211 1 223333334433333332 1111111111111112221 233566778888889999988
Q ss_pred HHHHHHc
Q 039342 230 MYEMFMM 236 (248)
Q Consensus 230 m~~~~~~ 236 (248)
++.....
T Consensus 290 l~~~~~~ 296 (355)
T cd05804 290 LKGRASS 296 (355)
T ss_pred HHHHHhc
Confidence 8776544
No 69
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=0.00011 Score=58.98 Aligned_cols=216 Identities=8% Similarity=0.011 Sum_probs=162.8
Q ss_pred CchHHHHHHHHHHHHcCC-C-CCHHhHHHHH-------------------------------HHHHhcCCHHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSESGV-A-RNSDSFNAVI-------------------------------EAFRQGGRFEEAIKAYVE 48 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~-~-~~~~~y~~li-------------------------------~~~~~~~~~~~a~~~~~~ 48 (248)
.|+|+|+.+|+++.+... + -|..+|..++ +.|+-.++.++|...|++
T Consensus 276 rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkR 355 (559)
T KOG1155|consen 276 RDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKR 355 (559)
T ss_pred hhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHH
Confidence 478999999999987642 1 1445554443 335556678999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH
Q 039342 49 MEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128 (248)
Q Consensus 49 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 128 (248)
..+.+ +-....|+.+-.-|....+...|.+-++...+.. +.|-..|-.|=++|.-.+...=|+-.|++..+ ++|+.
T Consensus 356 ALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnD 431 (559)
T KOG1155|consen 356 ALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPND 431 (559)
T ss_pred HHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCc
Confidence 88765 3445778888999999999999999999988763 23778899999999999999999999998764 45888
Q ss_pred HhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH----CCCCCCcchhhh
Q 039342 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK----RGLFPELFRHNK 204 (248)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~t~~~ 204 (248)
......+-.+|.+.++.++|...|......|-. +...+..+-+.+-+.++.++|...|.+..+ .|.. +..|..+
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka 509 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKA 509 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHH
Confidence 888877878899999999999999988877644 668899999999999999999999987664 2322 3334444
Q ss_pred HHhhhhhhccccchHHHHHHH
Q 039342 205 LVWSVDVHRMWEGGAYTAISV 225 (248)
Q Consensus 205 li~~~~~~~~~~~g~~~~~~~ 225 (248)
.+| +..-+.+.+++++|..
T Consensus 510 ~~f--LA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 510 RLF--LAEYFKKMKDFDEASY 528 (559)
T ss_pred HHH--HHHHHHhhcchHHHHH
Confidence 443 2244455555555544
No 70
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.49 E-value=1.8e-07 Score=46.37 Aligned_cols=29 Identities=31% Similarity=0.649 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVR 53 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~ 53 (248)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45566666666666666666666665554
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.48 E-value=4.8e-05 Score=62.98 Aligned_cols=211 Identities=14% Similarity=0.124 Sum_probs=142.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHC-----C-C
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-----R-CDPNERTL-EAVLSVYCFAGLVDESKEQFQEIKSS-----G-I 89 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~m~~~-----~-~ 89 (248)
..+...+-..|...|+++.|..+++...+. | ..|...+. +.+-..|...+++++|..+|+++... | -
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666999999999999999999887543 2 12333332 34667888999999999999998642 2 1
Q ss_pred Cc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---C---CCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc---C
Q 039342 90 LP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHT---N---RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE---G 159 (248)
Q Consensus 90 ~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~ 159 (248)
.| -..+++.|-.+|.+.|++++|...+++..+ . -..|.......-+...+...+.++.+..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 22 346788888899999999988887776532 1 122444444444445577778888888887654332 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCchHHHHHHHHHHHHC---CCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHH
Q 039342 160 YGL----GMRFYNALLEALWCLGLRERAARVLDEATKR---GLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232 (248)
Q Consensus 160 ~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~ 232 (248)
+.+ -..+++.+-..|...|++++|.+++++.... +..-...-.+..+|.+. ..|.+.++..++.++|.+=+.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la-~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA-EAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH-HHHHHhcccchHHHHHHHHHH
Confidence 222 3578999999999999999999999987642 11111111244444443 456777888878887766544
Q ss_pred HH
Q 039342 233 MF 234 (248)
Q Consensus 233 ~~ 234 (248)
-.
T Consensus 438 i~ 439 (508)
T KOG1840|consen 438 IM 439 (508)
T ss_pred HH
Confidence 43
No 72
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.48 E-value=0.00017 Score=62.13 Aligned_cols=187 Identities=11% Similarity=0.087 Sum_probs=142.1
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.+++.+..+... .+...|-+|-..|-+.|+.+++...+-..-.. -+-|...|..+-....+.|+++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 899999999999987653 57889999999999999999998776554333 3567789999999999999999999999
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHH----HHhcccccccchHHHHHHHHHHHHh
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG----QMIKGEFDDESNWQMVEYVFDKLNC 157 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~ 157 (248)
.+..+.. +++...+--=...|-+.|+...|..-|.++....-+.+-.-+. ..+.. +...+.-+.|.+.++....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~-~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY-FITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHh
Confidence 9998874 3355555566778889999999999999998765322323333 33333 3333333666666655444
Q ss_pred -cCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 158 -EGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 158 -~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
.+-..+...++++...+.+...++.+......+..
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 34445677889999999999999999999888876
No 73
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.47 E-value=2.6e-07 Score=45.81 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 74
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.46 E-value=2.5e-06 Score=68.85 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=89.8
Q ss_pred chHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 3 LYKECQAILSRMSES--GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~--g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
+++.+..++.+.+.. ....-..|..++|+.|.+.|..+.++.+++.=...|+-||..|+|.||..+.+.|++..|.++
T Consensus 81 ~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V 160 (429)
T PF10037_consen 81 DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKV 160 (429)
T ss_pred HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHH
Confidence 467788888888765 222334566799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhc
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKS 106 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~ 106 (248)
..+|...+...+..|+...+.+|.+-
T Consensus 161 ~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 161 ATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99998777777888888888887776
No 75
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.46 E-value=8.8e-06 Score=58.88 Aligned_cols=89 Identities=18% Similarity=0.378 Sum_probs=71.9
Q ss_pred CCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------ChhHHH
Q 039342 20 ARNSDSFNAVIEAFRQG-----GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG----------------LVDESK 78 (248)
Q Consensus 20 ~~~~~~y~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g----------------~~~~a~ 78 (248)
..+-.+|..++..|.+. |.++-....++.|.+-|+.-|..+|+.||+.+=+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 46889999999999865 778999999999999999999999999999876522 345667
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHhcCC
Q 039342 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 108 (248)
+++++|...|+.||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 777777777777777777777777776654
No 76
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.44 E-value=7.7e-05 Score=56.26 Aligned_cols=182 Identities=13% Similarity=0.104 Sum_probs=108.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHh---
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN----ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM--- 94 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--- 94 (248)
....+-.+...+.+.|+++.|...|++..+.. |+ ...+..+..++.+.|++++|...++++.+.. |+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchH
Confidence 45677777788888899999999998886543 32 2456677788888899999999999887642 3211
Q ss_pred -hHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHH
Q 039342 95 -CYCMLLAVYAKS--------NRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR 165 (248)
Q Consensus 95 -~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 165 (248)
++..+-.++... |+.++|.+.|++..+.. |+.......+.. . ........ .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~-~---------~~~~~~~~--------~ 167 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKR-M---------DYLRNRLA--------G 167 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHH-H---------HHHHHHHH--------H
Confidence 344444444433 56778888888776553 332211111100 0 00000000 0
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC----cchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHH
Q 039342 166 FYNALLEALWCLGLRERAARVLDEATKRGLFPE----LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234 (248)
Q Consensus 166 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~ 234 (248)
....+-..+.+.|++++|...++...+. .|+ ...+..+. ..+.+.|+.+++...++.+..+.
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~a~~~l~-----~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVEN--YPDTPATEEALARLV-----EAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH--CCCCcchHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHhhC
Confidence 1123445677778888888888777654 222 22333333 66777788888888777776553
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=5.2e-05 Score=58.23 Aligned_cols=219 Identities=12% Similarity=0.001 Sum_probs=138.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChhHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE-AVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~g~~~~a~~~ 80 (248)
|.+.+|++.|+.-.+. .|-+.||-.|-.+|.+..+++.|+.++.+-.+. .|-.+||- -+.+.+-..++.++|.++
T Consensus 237 gm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~l 312 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQL 312 (478)
T ss_pred cChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHH
Confidence 5677888888876653 477889999999999999999999999887654 46555654 455667777888888888
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCC
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 160 (248)
++...+.. ..++....++-.+|.-.++.+-|++.++++.+-|+.... .|..+-.. |-..++++.+.--|......-.
T Consensus 313 Yk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe-Lf~NigLC-C~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 313 YKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE-LFCNIGLC-CLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred HHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH-HHhhHHHH-HHhhcchhhhHHHHHHHHhhcc
Confidence 88876542 235666666777777788888888888888888765433 33333222 4445556666655555544433
Q ss_pred CCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 161 GLG--MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 161 ~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
.|+ ...|-.+-...+-.|++..|...|+-..... .-+...++.|- ---.+.|+++.|..+++.-+..
T Consensus 390 ~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLa-----vL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 390 QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLA-----VLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred CcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHH-----HHHhhcCchHHHHHHHHHhhhh
Confidence 333 2234444555555666677766666544321 11222333332 2234666666666666655443
No 78
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.43 E-value=6.1e-05 Score=67.63 Aligned_cols=193 Identities=11% Similarity=0.033 Sum_probs=129.9
Q ss_pred CchHHHHHHHHHHHHc-CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 039342 2 GLYKECQAILSRMSES-GVAR---NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~-g~~~---~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 77 (248)
+++++|++++++.... +++- -...|.++++.-..-|.-+...++|++..+.- -....|..|...|.+.+++++|
T Consensus 1472 sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A 1549 (1710)
T KOG1070|consen 1472 SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEA 1549 (1710)
T ss_pred hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhH
Confidence 4567777777776532 1111 23467777776666777777777887776531 1134567788888888888888
Q ss_pred HHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHH-hHHHHhcccccccchHHHHHHHHHHHH
Q 039342 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ-VTGQMIKGEFDDESNWQMVEYVFDKLN 156 (248)
Q Consensus 78 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~ 156 (248)
-++++.|.+. +.-...+|...+..+.++++-+.|.+++.+..+.--+-.+. .+.....- --+.|+.+.+..+|+...
T Consensus 1550 ~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL-EFk~GDaeRGRtlfEgll 1627 (1710)
T KOG1070|consen 1550 DELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL-EFKYGDAERGRTLFEGLL 1627 (1710)
T ss_pred HHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH-HhhcCCchhhHHHHHHHH
Confidence 8888888754 12356788888888888888888888888766543111121 11111111 224566677788888877
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCc
Q 039342 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL 199 (248)
Q Consensus 157 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 199 (248)
....+ -...|+..|+.-.++|+.+.+..+|++....++.|..
T Consensus 1628 ~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1628 SAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 76444 4677899999999999999999999999888887754
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.41 E-value=2.2e-05 Score=60.89 Aligned_cols=154 Identities=13% Similarity=0.192 Sum_probs=109.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh----c
Q 039342 31 EAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK----S 106 (248)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~ 106 (248)
..+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCc
Confidence 3455679999999888652 556777888999999999999999999998753 33 344445554443 3
Q ss_pred CCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch-HHHHH
Q 039342 107 NRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAAR 185 (248)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~ 185 (248)
..+.+|..+|+++.+. ..++..+.+..... ....|++++|+.++.+..+.+.. +..+...++-+....|+. +.+.+
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~-~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVC-HLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHH-HHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHH
Confidence 4699999999998665 44555666655544 67788999999999987665543 566777777777778877 67888
Q ss_pred HHHHHHHCCCCCC
Q 039342 186 VLDEATKRGLFPE 198 (248)
Q Consensus 186 ~~~~m~~~g~~p~ 198 (248)
++.+++.. .|+
T Consensus 258 ~l~qL~~~--~p~ 268 (290)
T PF04733_consen 258 YLSQLKQS--NPN 268 (290)
T ss_dssp HHHHCHHH--TTT
T ss_pred HHHHHHHh--CCC
Confidence 88887763 454
No 80
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=6.3e-05 Score=56.04 Aligned_cols=172 Identities=17% Similarity=0.111 Sum_probs=114.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 039342 47 VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126 (248)
Q Consensus 47 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 126 (248)
+.+......-+......-...|++.|++++|.+...... +......=+..+.+..+++-|...+++|.+-.
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--- 167 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID--- 167 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---
Confidence 333333334443444444567899999999999887622 34455555666778889999999999998764
Q ss_pred hHHhHHHHhccc---ccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhh
Q 039342 127 IHQVTGQMIKGE---FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHN 203 (248)
Q Consensus 127 ~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 203 (248)
+..|.+.+..++ .........|..+|++|.+. ..|+..+.+-...++...|++++|..++++...+.-. + +.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-d---pe 242 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-D---PE 242 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-C---HH
Confidence 344444333322 34456689999999999765 6788999999999999999999999999998765211 1 12
Q ss_pred hHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 204 KLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 204 ~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
.|+ +.++.+.-.+.+-+...+.+.+++..
T Consensus 243 tL~-Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 243 TLA-NLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHH-HHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 222 22223444445555566666666654
No 81
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=7e-05 Score=60.38 Aligned_cols=184 Identities=15% Similarity=0.125 Sum_probs=103.3
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------------------
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---------------------------- 53 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~---------------------------- 53 (248)
|+.-.|..-|+...+....++ ..|--+-..|....+.++....|+...+.+
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 555566666666555433221 225555555666666555555555554332
Q ss_pred ----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---
Q 039342 54 ----CDP-NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS--- 125 (248)
Q Consensus 54 ----~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--- 125 (248)
+.| +...|--+--+..|.++++++...|++.++. ++..+.+|+..-..+...+++++|.+.|+...+-.-.
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 112 2223333333445666777777777776654 3445677777777777777777777777765432111
Q ss_pred ----chHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 039342 126 ----NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190 (248)
Q Consensus 126 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 190 (248)
+...+-..++. +.-.+++..|..+++...+.+.+ ....|..|-..-..+|+.++|.++|++-
T Consensus 498 ~~v~~~plV~Ka~l~--~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLV--LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred ccccchhhhhhhHhh--hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11111112221 22336677777777776665544 3455777777777777777777777764
No 82
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=8.7e-05 Score=51.45 Aligned_cols=116 Identities=9% Similarity=-0.068 Sum_probs=90.3
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 039342 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG 88 (248)
Q Consensus 9 ~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 88 (248)
.+|++..+ -++..+...-..+...|++++|...|+...... +.+...|..+-.++.+.|++++|...|+...+..
T Consensus 14 ~~~~~al~----~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS----VDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555544 233346667778889999999999999987664 4577888899999999999999999999998753
Q ss_pred CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHH
Q 039342 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG 132 (248)
Q Consensus 89 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 132 (248)
+.+...+..+-.++...|+.++|...|++..+.. |+...+.
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~~ 129 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--YADASWS 129 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHH
Confidence 2367888888899999999999999999887654 5554444
No 83
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.34 E-value=0.00014 Score=62.93 Aligned_cols=136 Identities=15% Similarity=0.091 Sum_probs=115.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhH
Q 039342 53 RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131 (248)
Q Consensus 53 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 131 (248)
....+...+-.|-....+.|..++|..+++...+. .| +......+...+.+.+++++|+..+++..+.. |++...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~ 156 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSARE 156 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHH
Confidence 35566888889999999999999999999999875 56 45677888999999999999999999988765 888888
Q ss_pred HHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
.......+...|.+++|..+|++....+. -+..++..+-.++-+.|+.++|...|+...+.
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777778899999999999999988432 24788888999999999999999999987653
No 84
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.29 E-value=0.00078 Score=56.56 Aligned_cols=213 Identities=13% Similarity=0.095 Sum_probs=123.7
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|..++...+|++.... ++.....|-.....+..+||+..|..++....+.. +-+..+|-.-+..-.....++.|..+|
T Consensus 564 gt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 4556666666666543 22344556666666777788888888877776554 235677777777777888888888888
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
.+.+.. .|+..+|.--+..---.++.++|.+++++..+. -|+-.-+..++-..+...++.+.|...|..=.+. ++
T Consensus 642 akar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 642 AKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 776653 466667766666666667777888777766543 2444444444444444445555555544432221 12
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHH
Q 039342 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227 (248)
Q Consensus 162 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~ 227 (248)
-.+-.|-.+.+.=-+.|.+-+|..++++-.-+ .|+ +.++|--.++.-.+.|..++|+.++
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk----~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPK----NALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCC----cchhHHHHHHHHHHcCCHHHHHHHH
Confidence 22334444444445556666666666655433 233 3333433345555666666555443
No 85
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0002 Score=57.91 Aligned_cols=155 Identities=10% Similarity=0.002 Sum_probs=106.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHH
Q 039342 33 FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112 (248)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 112 (248)
+.-.|+.-.|.+-|+...+..-.++. .|--+-.+|....+.++....|+...+.+.. ++.+|..--..+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 34468888999999998877654444 2666677888889999999999888765422 555666666666667788888
Q ss_pred HHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 113 YGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 113 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
..=|++...-. |....-..-+....-+.+.++.+...|++.++. ++-.+..|+..-..+.-++++++|.+.|+...+
T Consensus 414 ~aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 88888766443 433322221221123445778888888887665 555677788888888888888888888887654
No 86
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.28 E-value=1.9e-05 Score=50.90 Aligned_cols=43 Identities=28% Similarity=0.297 Sum_probs=25.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CcCHhhHHHHHHHHHh
Q 039342 63 AVLSVYCFAGLVDESKEQFQEIKSSGI-LPSVMCYCMLLAVYAK 105 (248)
Q Consensus 63 ~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~ 105 (248)
.-|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 344455555666666666666666666 5666666666666554
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.26 E-value=0.00023 Score=53.65 Aligned_cols=103 Identities=15% Similarity=-0.018 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHH-
Q 039342 55 DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPS----VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ- 129 (248)
Q Consensus 55 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~- 129 (248)
......+-.+...+.+.|+++.|...|+++.+.. |+ ...+..+-.++...|++++|...++++.+..-.....
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456677788888999999999999999987652 32 2467778889999999999999999997654211111
Q ss_pred -hHHHHhcc-------cccccchHHHHHHHHHHHHhcC
Q 039342 130 -VTGQMIKG-------EFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 130 -~~~~~l~~-------~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
.+..+-.. .....++++.|...++......
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC
Confidence 11111111 1123367788888888877653
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.25 E-value=0.00017 Score=53.62 Aligned_cols=159 Identities=11% Similarity=0.012 Sum_probs=102.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhc
Q 039342 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106 (248)
Q Consensus 27 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 106 (248)
.-+-..+...|+-+....+....... -+-|....+.......+.|++..|...|.+..... ++|...|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555566667766666665554321 23344455567777888888888888887776542 45777888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 039342 107 NRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186 (248)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 186 (248)
|+++.|..-|.+..+-.. -.....+.+-.. +.-.|+.+.|..++......+.. |...-..+.......|+++.|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms-~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMS-LLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHH-HHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888877765432 112223333323 44566777888777776665443 555666777777888888888877
Q ss_pred HHHH
Q 039342 187 LDEA 190 (248)
Q Consensus 187 ~~~m 190 (248)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6543
No 89
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.24 E-value=2.1e-05 Score=56.98 Aligned_cols=118 Identities=11% Similarity=0.103 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH
Q 039342 54 CDPNERTLEAVLSVYCF-----AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128 (248)
Q Consensus 54 ~~p~~~t~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 128 (248)
-..|-.+|..++..|.+ .|.++-....+..|.+-|+.-|..+|+.||+.+=+..-. ..
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv-----------------p~ 105 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV-----------------PR 105 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc-----------------cc
Confidence 36788899999998864 578888899999999999999999999999987752221 22
Q ss_pred HhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 039342 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR-ERAARVLDEAT 191 (248)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 191 (248)
..+...... + ..+-+.+.+++++|...|+.||..|+..+++.+++.+.. .+...+.-.|.
T Consensus 106 n~fQ~~F~h-y--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 106 NFFQAEFMH-Y--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred cHHHHHhcc-C--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 233333322 3 344579999999999999999999999999999988753 33444444443
No 90
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.23 E-value=0.00013 Score=63.33 Aligned_cols=230 Identities=11% Similarity=0.056 Sum_probs=149.8
Q ss_pred CchHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039342 2 GLYKECQAILSRMSESGVARN-SDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~-~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~ 79 (248)
++++.|.+++..+.+.- |+ +..|--+....-..+...+|...++..... .-.|+. ++.+-..+.+..++..|.+
T Consensus 510 ~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~a--rsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNA--RSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred hhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHH--HHHHHHHHHhhhhhccccc
Confidence 35677778888776532 43 444544543333446777788787776443 334544 4446668888888888888
Q ss_pred HHHHHHHC-CCCcCHhhHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHH
Q 039342 80 QFQEIKSS-GILPSVMCYCMLLAVYAK------------SNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146 (248)
Q Consensus 80 ~~~~m~~~-~~~p~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (248)
=|+...+. ...+|+.+.-+|-+.|.. .+..++|+++|.+..... |.+.....-|...+...|++.
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCch
Confidence 77666543 222565555555554432 234678888888877654 544444444445577889999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHH
Q 039342 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226 (248)
Q Consensus 147 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~ 226 (248)
.|..+|.+..+.... ...+|-.+-.+|+.+|++..|.++|+...+.-.+-+ +.-+..++.+++-+.|.+.+|.++
T Consensus 664 ~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~----~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 664 EARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKN----RSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred HHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999887542 445678899999999999999999998765433333 333444555888888888888776
Q ss_pred HHHHHHHHHcCCCCCccc
Q 039342 227 LNKMYEMFMMGEDLPQLA 244 (248)
Q Consensus 227 ~~~m~~~~~~~~~~~~~~ 244 (248)
+-.- +...|..+....
T Consensus 739 ll~a--~~~~p~~~~v~F 754 (1018)
T KOG2002|consen 739 LLKA--RHLAPSNTSVKF 754 (1018)
T ss_pred HHHH--HHhCCccchHHh
Confidence 5443 334565555443
No 91
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.23 E-value=0.00087 Score=56.28 Aligned_cols=185 Identities=12% Similarity=0.085 Sum_probs=146.6
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
+||+..|+.++.+.-+... -+...|-+-+..-..+.+++.|..+|.+... ..|+...|.--++.-.-.++.++|.++
T Consensus 597 agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 5899999999999887553 3678999999999999999999999999876 468888888777777778999999999
Q ss_pred HHHHHHCCCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 81 FQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 81 ~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
+++-.+. .|+ ...|-.+=+.+-+.++++.|...|..-.+ ..|...-.+.++...-...+.+-.|..+++.-.-.+
T Consensus 674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 9887765 344 34566666777778888888888875433 236666666666654556678889999999887776
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 160 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
.. +...|-..|+.-.+.|+.+.|..+..+..+.
T Consensus 750 Pk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 750 PK-NALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred CC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55 7888999999999999999999888776543
No 92
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.22 E-value=0.0016 Score=56.48 Aligned_cols=119 Identities=11% Similarity=0.138 Sum_probs=76.2
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCChhHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL----EAVLSVYCFAGLVDES 77 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~----~~ll~~~~~~g~~~~a 77 (248)
|++++|.-.|.+..+... ++...+--=...|-+.|+...|.+.|.++....-+.|..-+ -.++..+...++.+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 556777777777766442 34455555566777778888888888777655322222222 2334556666777777
Q ss_pred HHHHHHHHHC-CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039342 78 KEQFQEIKSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121 (248)
Q Consensus 78 ~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 121 (248)
.+.++..... +-..+...+++++..|.+...++.|......+..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 7777766542 2234566778888888888888888877777765
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.21 E-value=0.00028 Score=51.71 Aligned_cols=119 Identities=8% Similarity=0.046 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHH-HhcCC--HHHH
Q 039342 36 GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY-AKSNR--WDDA 112 (248)
Q Consensus 36 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~~~--~~~a 112 (248)
.++.+++...++...+.+ +.|...|..+-..|...|+++.|...|++..+... -+...+..+-.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344444444444443332 34445555555555555555555555555544321 1334444444432 34344 2555
Q ss_pred HHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc
Q 039342 113 YGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 113 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
..++++..+.. |+.......+...+...|+++.|...++.+.+.
T Consensus 130 ~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555554443 333222222222244455555555555555444
No 94
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.14 E-value=0.00027 Score=48.28 Aligned_cols=105 Identities=13% Similarity=0.070 Sum_probs=83.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
+......+...+.+.|++++|.+.++.....+ +.+...+..+-.++.+.|+++.|..++++..+.+ +.+...+..+-.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 44566677788888999999999999987754 4577888888889999999999999999887764 335677777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCchHHh
Q 039342 102 VYAKSNRWDDAYGLLDEMHTNRISNIHQV 130 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 130 (248)
.+...|++++|...|++..+.. |+...
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~--p~~~~ 120 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEIC--GENPE 120 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhc--cccch
Confidence 8999999999999998887654 44443
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.13 E-value=0.0012 Score=48.32 Aligned_cols=157 Identities=10% Similarity=0.058 Sum_probs=110.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC
Q 039342 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 108 (248)
-+..|...|+++.+..-.+.+.. |. . .+...++.+++...++...+.. +.+...|..+-..|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 34568889998887544432211 11 0 1122566677777777766543 3478899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCchHHhHHHH-hcccccccch--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 039342 109 WDDAYGLLDEMHTNRISNIHQVTGQM-IKGEFDDESN--WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185 (248)
Q Consensus 109 ~~~a~~~~~~m~~~~~~~~~~~~~~~-l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 185 (248)
+++|...|++..... |+....... -...+...|+ .+.+..++++..+.+.. +...+..+-..+.+.|++++|..
T Consensus 89 ~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 89 YDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999988765 544433333 2222344444 58999999999888655 67788888899999999999999
Q ss_pred HHHHHHHCCCCCCcchh
Q 039342 186 VLDEATKRGLFPELFRH 202 (248)
Q Consensus 186 ~~~~m~~~g~~p~~~t~ 202 (248)
.|+++.+. .+|+...+
T Consensus 166 ~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 166 LWQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHHHhh-CCCCccHH
Confidence 99999875 35555443
No 96
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=0.00015 Score=58.50 Aligned_cols=112 Identities=15% Similarity=0.110 Sum_probs=76.8
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
++++.|..+|+++.+.. |+ ....+...+...++-.+|.+++++..+.. +-|......-...|.+.++.+.|.++.
T Consensus 183 ~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 56777888888777643 33 33446666666777777777777776432 345556666666677777888888888
Q ss_pred HHHHHCCCCcCH-hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 82 QEIKSSGILPSV-MCYCMLLAVYAKSNRWDDAYGLLDEMH 120 (248)
Q Consensus 82 ~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 120 (248)
++..+. .|+. .+|..|..+|.+.|+++.|+..++.+.
T Consensus 258 k~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 258 KKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777764 4544 477888888888888888887777653
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.00029 Score=53.61 Aligned_cols=206 Identities=16% Similarity=0.126 Sum_probs=142.0
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhH
Q 039342 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96 (248)
Q Consensus 17 ~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 96 (248)
.|+.....-+.+.+..+.+..+++.|.+++....+.. +-+....+.+-.+|.+..++..|-..++++... .|...-|
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qY 80 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQY 80 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHH
Confidence 3444444557788888899999999999998876653 237778888999999999999999999999875 4555444
Q ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHHCC-CCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039342 97 CM-LLAVYAKSNRWDDAYGLLDEMHTNR-ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174 (248)
Q Consensus 97 ~~-li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 174 (248)
.. -..++-+.+.+..|+++...|.+.. ......-..+.| .-..+++-.+..++++....| +..+.+..-...
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAI---kYse~Dl~g~rsLveQlp~en---~Ad~~in~gCll 154 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAI---KYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHH---hcccccCcchHHHHHhccCCC---ccchhccchhee
Confidence 42 2355667888999999999887641 111111112222 223455666666766654332 334444444556
Q ss_pred HhcCchHHHHHHHHHHHH-CCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCC
Q 039342 175 WCLGLRERAARVLDEATK-RGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238 (248)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~ 238 (248)
.+.|+++.|.+-|+...+ .|..| ...|+.-+ +..+.|+.+.|.+...+..++|+...
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqp-llAYniAL------aHy~~~qyasALk~iSEIieRG~r~H 212 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL------AHYSSRQYASALKHISEIIERGIRQH 212 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH------HHHhhhhHHHHHHHHHHHHHhhhhcC
Confidence 688999999999998776 45555 35566554 44567888999999999999998753
No 98
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00028 Score=48.98 Aligned_cols=126 Identities=13% Similarity=0.208 Sum_probs=77.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC--HhhHHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN---ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPS--VMCYCM 98 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ 98 (248)
..|..++..+ ..++...+.+.++.+.+.. +.+ ....-.+-..+...|++++|...|+...+....|+ ....-.
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4555556665 3777777877777776653 222 12222344667778888888888888877652232 224444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHH
Q 039342 99 LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154 (248)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 154 (248)
+...+...|++++|+..++..... +....+..+.--.+...|+++.|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666777788888888888664333 33334444444446677778888877764
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.00048 Score=58.24 Aligned_cols=196 Identities=15% Similarity=0.055 Sum_probs=118.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 103 (248)
..|.-+|.+|+..|+..+|..+..+-.+ -+||+..|..+.+......-+++|.++++..... .-..+-...
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~ 495 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLI 495 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhcccc
Confidence 3455666777777777777776666555 2577777777766666666666777666654322 000011111
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHH
Q 039342 104 AKSNRWDDAYGLLDEMHTNR-ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182 (248)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 182 (248)
.++++++++.+.|+.-.+.. ..+ .+|... -.+.-..++++.+...|........ -+...||.+-.+|.+.+...+
T Consensus 496 ~~~~~fs~~~~hle~sl~~nplq~--~~wf~~-G~~ALqlek~q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINPLQL--GTWFGL-GCAALQLEKEQAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCccch--hHHHhc-cHHHHHHhhhHHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHH
Confidence 22566666666666543322 111 122111 1112344567777777776655432 246779999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCC
Q 039342 183 AARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238 (248)
Q Consensus 183 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~ 238 (248)
|...+.+..+.+..+-. +|--...--.+.|.+++|.+.+..+.+......
T Consensus 572 a~~~l~EAlKcn~~~w~------iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 572 AFRKLKEALKCNYQHWQ------IWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred HHHHHHHHhhcCCCCCe------eeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 99999998876644321 121111344688999999998888877765544
No 100
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00026 Score=57.03 Aligned_cols=125 Identities=17% Similarity=0.156 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccc
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF 139 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~ 139 (248)
....+++.+...++++.|.++|+++.+.. |+ ....+.+.+...++-.+|.+++++..+.. |.....-.+-..++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34556777778899999999999999874 54 45568888888888899999999888553 43333333333446
Q ss_pred cccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 140 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
...++++.|..+.++..+.... +..+|..|..+|...|+++.|...++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6778889999999988876322 56689999999999999999999988764
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.01 E-value=0.002 Score=58.54 Aligned_cols=204 Identities=15% Similarity=0.099 Sum_probs=151.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDP---NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC 97 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 97 (248)
+...|-..|......++.+.|.++.++.... ++.- -...|.++++.-...|.-+...++|++..+.- -.-.+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4668999999999999999999999998543 2111 12467778887777788899999999998752 2246799
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHH
Q 039342 98 MLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG---MRFYNALLEAL 174 (248)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~ 174 (248)
.|...|.+....++|-++|+.|.+.=- -....|...... .-+...-++|..++.+..+. .|. .....-....-
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~f-Ll~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADF-LLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHH-HhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 999999999999999999999977532 334445444444 44455557888888765543 333 44455566667
Q ss_pred HhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcC
Q 039342 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMG 237 (248)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~ 237 (248)
.+.|+.+++..+|+..... .|. ..-+|+..+..-.++|..+.+..+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~a--yPK----RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA--YPK----RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh--Ccc----chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 7899999999999987754 332 45566666688888999898999999888877665
No 102
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00065 Score=50.82 Aligned_cols=174 Identities=12% Similarity=0.093 Sum_probs=115.4
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 039342 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87 (248)
Q Consensus 8 ~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 87 (248)
.++.+.+.......+...-..-...|++.|++++|++..... -+......=+..+.+..+++.|.+.++.|.+-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344555555444444444444456788999999999888762 22233333445566778899999999999875
Q ss_pred CCCcCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCC
Q 039342 88 GILPSVMCYCMLLAVYAK----SNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG 163 (248)
Q Consensus 88 ~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 163 (248)
-+..|.+-|-.++.+ .+.+.+|.-+|++|-++ ..|+..+.+..... +...+++++|+.++++....... +
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~-~l~~~~~eeAe~lL~eaL~kd~~-d 240 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVC-HLQLGRYEEAESLLEEALDKDAK-D 240 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHH-HHHhcCHHHHHHHHHHHHhccCC-C
Confidence 256677766666654 45689999999999763 45777777666554 66778899999999998887655 3
Q ss_pred HHHHH-HHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 164 MRFYN-ALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 164 ~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
..|.. .++.+.....+.+-..+.+.+++..
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 44444 4444444444545566666676654
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.0004 Score=51.67 Aligned_cols=151 Identities=12% Similarity=0.055 Sum_probs=115.5
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|+-+.+..+...... ..+.+....+.......+.|++..|...+++..... ++|...|+.+--+|.+.|+++.|..-|
T Consensus 80 G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay 157 (257)
T COG5010 80 GDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAY 157 (257)
T ss_pred ccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHH
Confidence 444555555555432 223466677779999999999999999999987654 789999999999999999999999999
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHh
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC 157 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 157 (248)
.+..+... -+...+|.+--.+.-.|+.+.|..++......+.. +..+-..+... ....|+++.|+.+...-..
T Consensus 158 ~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~-~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 158 RQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALV-VGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHH-HhhcCChHHHHhhcccccc
Confidence 99887522 25678899999999999999999999998877632 33334444433 6778888999988665443
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.99 E-value=0.00031 Score=48.67 Aligned_cols=89 Identities=12% Similarity=0.030 Sum_probs=77.1
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|...|+....... .+...|..+-.++.+.|++++|...|+...+.+ +.+...+..+-.++.+.|++++|...|
T Consensus 38 g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~ 115 (144)
T PRK15359 38 GDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAF 115 (144)
T ss_pred CCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 889999999999987543 478899999999999999999999999998764 467788999999999999999999999
Q ss_pred HHHHHCCCCcCHh
Q 039342 82 QEIKSSGILPSVM 94 (248)
Q Consensus 82 ~~m~~~~~~p~~~ 94 (248)
+...+. .|+..
T Consensus 116 ~~Al~~--~p~~~ 126 (144)
T PRK15359 116 QTAIKM--SYADA 126 (144)
T ss_pred HHHHHh--CCCCh
Confidence 998875 45443
No 105
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.0027 Score=52.42 Aligned_cols=197 Identities=14% Similarity=0.146 Sum_probs=136.7
Q ss_pred CchHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHhcCChhHH
Q 039342 2 GLYKECQAILSRMSESGVARN-SDSFNAVIEAFRQGGRFEEAIKAYVEMEKV--RC-DPNERTLEAVLSVYCFAGLVDES 77 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~-~~~y~~li~~~~~~~~~~~a~~~~~~m~~~--~~-~p~~~t~~~ll~~~~~~g~~~~a 77 (248)
|..++|++.|..... +.|+ ...|-.+-+.|+-.|..++|+..+...-+. |. .|. .| +---|.+.+..+.|
T Consensus 326 ~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LY--lgmey~~t~n~kLA 399 (611)
T KOG1173|consen 326 GKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LY--LGMEYMRTNNLKLA 399 (611)
T ss_pred cCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HH--HHHHHHHhccHHHH
Confidence 566777777776543 2233 457777778888888888887777665332 22 222 12 33457778899999
Q ss_pred HHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCchHHhHHHHhcccccccchHHHHHH
Q 039342 78 KEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----R--ISNIHQVTGQMIKGEFDDESNWQMVEY 150 (248)
Q Consensus 78 ~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~--~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (248)
.+.|.+... +.| |+...+-+--..-..+.+.+|..+|+.-... + ..-+..+++.+=.. +++.+.+++|..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~-~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA-YRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH-HHHHhhHHHHHH
Confidence 999987665 345 5666776666666678899999998876521 1 11244455555444 788888999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhh
Q 039342 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVD 210 (248)
Q Consensus 151 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 210 (248)
.++.-.....+ +..++.++--.|...|+++.|.+.|.+.. .+.|+-.+.+.++...+
T Consensus 477 ~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 477 YYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 99887776444 78899999999999999999999999865 46888766666665443
No 106
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.97 E-value=0.0025 Score=51.68 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=62.1
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN-ERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
|..++|+..++.+...- +-|+.-+......+.+.++..+|.+.++.+... .|+ ....-.+-.+|.+.|++.+|..+
T Consensus 320 ~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 320 GQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 45556666666654422 124444445555566666666666666665543 344 23333445566666666666666
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 119 (248)
++...... +-|+..|..|-.+|...|+..++..-..+.
T Consensus 397 L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 397 LNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 66555432 235556666666666666666655555543
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.95 E-value=0.0065 Score=49.39 Aligned_cols=163 Identities=14% Similarity=0.038 Sum_probs=111.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHH
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCML 99 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l 99 (248)
|+...+...+.+......-..+..++.+-.+. .-...-|..-+. +...|+.++|+..++.+... .| |..-+...
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~ 346 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAA--QPDNPYYLELA 346 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHh--CCCCHHHHHHH
Confidence 45555555555554444333333333332221 222334554444 44678999999999998865 35 56667778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 039342 100 LAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179 (248)
Q Consensus 100 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 179 (248)
...+.+.++.++|.+.++.+.... |+...........+-..|+++++..+++...... +-|+..|..|-++|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc
Confidence 888999999999999999988654 6655554444444667788889998888877664 3478899999999999999
Q ss_pred hHHHHHHHHHHH
Q 039342 180 RERAARVLDEAT 191 (248)
Q Consensus 180 ~~~a~~~~~~m~ 191 (248)
..++..-..+..
T Consensus 424 ~~~a~~A~AE~~ 435 (484)
T COG4783 424 RAEALLARAEGY 435 (484)
T ss_pred hHHHHHHHHHHH
Confidence 888888777654
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.95 E-value=0.0025 Score=57.89 Aligned_cols=231 Identities=13% Similarity=0.091 Sum_probs=137.3
Q ss_pred CchHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSES----GV-ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK----VRCD--P-NERTLEAVLSVYC 69 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~----g~-~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~----~~~~--p-~~~t~~~ll~~~~ 69 (248)
|++++|...+++.... |- .+...+++.+-..+...|+++.|...+++... .+.. | ....+..+-..+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 7888888888876532 11 11123555566677889999999998887643 2321 1 2334445556677
Q ss_pred hcCChhHHHHHHHHHHHC--CCCc--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C-chH--HhHHHHhccccc
Q 039342 70 FAGLVDESKEQFQEIKSS--GILP--SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI--S-NIH--QVTGQMIKGEFD 140 (248)
Q Consensus 70 ~~g~~~~a~~~~~~m~~~--~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~-~~~--~~~~~~l~~~~~ 140 (248)
..|++++|...+.+.... ...+ ....+..+...+...|+.++|.+.+.+...... . +.. .....+....+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 789999999988876542 1112 234455566677789999999998888744211 1 100 111111111133
Q ss_pred ccchHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCchHHHHHHHHHHHHC----CCCCCcchhhhHHhhhhhhc
Q 039342 141 DESNWQMVEYVFDKLNCEGYGLG---MRFYNALLEALWCLGLRERAARVLDEATKR----GLFPELFRHNKLVWSVDVHR 213 (248)
Q Consensus 141 ~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li~~~~~~~ 213 (248)
..|+.+.+...+........... ...+..+..++...|+.++|...+++.... |..++ ..-.....-..
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~----~a~~~~~la~a 740 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD----LNRNLILLNQL 740 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH----HHHHHHHHHHH
Confidence 45677888877766443211111 111345667788899999999999887642 32221 11112222356
Q ss_pred cccchHHHHHHHHHHHHHHHHHc
Q 039342 214 MWEGGAYTAISVWLNKMYEMFMM 236 (248)
Q Consensus 214 ~~~~g~~~~~~~~~~~m~~~~~~ 236 (248)
+...|+.++|...+.+-.+..-.
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCc
Confidence 67888888888888777766543
No 109
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.0024 Score=51.80 Aligned_cols=184 Identities=10% Similarity=0.025 Sum_probs=133.0
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
+++..|.++|++...... .+...|--.+..=.++..+..|..+++.....=-..| ..|--.+.+=-..|++..|.++|
T Consensus 87 ~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHH
Confidence 467889999999887553 5778888888888899999999999999865422223 33444555556679999999999
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc-CC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE-GY 160 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~ 160 (248)
++..+ ..|+...|++.|+.=.+-+.++.|..++++..-.. |....|-....- -.++|....+..+|+...+. |-
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarF-E~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARF-EEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHhhh
Confidence 98876 47999999999999999999999999999987544 777666555443 45667778888888766553 21
Q ss_pred -CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 161 -GLGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 161 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
.-+...|.++..-=.++..++.|.-+|+-..+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223344444434456677777777766554
No 110
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.0036 Score=51.73 Aligned_cols=219 Identities=14% Similarity=0.039 Sum_probs=140.7
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
++++.+..++++...+.. ++....+..=|..+...|+-.+-+.+=.+|.+. .+-...+|-++---|.-.|+..+|++.
T Consensus 257 ~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 467888888888887643 356677777788888888888777776777654 345567888888888888999999999
Q ss_pred HHHHHHCCCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHH--------------------------------CCCCch
Q 039342 81 FQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEMHT--------------------------------NRISNI 127 (248)
Q Consensus 81 ~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------------------------------~~~~~~ 127 (248)
|.+-... .|+ ...|-..-.+|+-.+..|+|+..+...-+ .++-|.
T Consensus 335 ~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~ 412 (611)
T KOG1173|consen 335 FSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS 412 (611)
T ss_pred HHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 9876543 221 23555555666666666665555443211 123343
Q ss_pred HHhHHHHhcccccccchHHHHHHHHHHHHhc--CCC----CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcch
Q 039342 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCE--GYG----LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201 (248)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 201 (248)
......=+....-..+.+.+|..+|+.-... .+. --..+++.|-.+|.+.+.+++|...+++.... .+-+..|
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~ 491 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDAST 491 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhH
Confidence 3333222222122346678888877765521 111 12346788889999999999999999987654 2446667
Q ss_pred hhhHHhhhhhhccccchHHHHHHHHHHH
Q 039342 202 HNKLVWSVDVHRMWEGGAYTAISVWLNK 229 (248)
Q Consensus 202 ~~~li~~~~~~~~~~~g~~~~~~~~~~~ 229 (248)
|.++- -.|...|+++.|.+.|.+
T Consensus 492 ~asig-----~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 492 HASIG-----YIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHH-----HHHHHhcChHHHHHHHHH
Confidence 77666 345566777776665543
No 111
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.93 E-value=0.00063 Score=47.20 Aligned_cols=128 Identities=10% Similarity=0.061 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHh-HHHHh
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP--SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV-TGQMI 135 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~~l 135 (248)
..|..++..+. .++...+...++.+.+..-.. .....-.+-..+...|++++|...|+...+....|.... ...-+
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 45666666664 888999999999998753111 123344455778889999999999999988763332221 22223
Q ss_pred cccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 039342 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189 (248)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 189 (248)
...+...++++.|...++......+ ....+...-+.+.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3446678889999999876443333 345666778889999999999999875
No 112
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.008 Score=48.93 Aligned_cols=224 Identities=10% Similarity=0.036 Sum_probs=130.1
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++..|.++|++-.+ ..|+...|++.|..=.+-+.++.|..+++...- +.|+..+|--....=-+.|.+..+.++|
T Consensus 155 gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 567777777776544 357777777777777777777777777777754 3477777777777777777777777777
Q ss_pred HHHHHC-CC-CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHhHHHHhcccccccchHHHHHHH-------
Q 039342 82 QEIKSS-GI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI-HQVTGQMIKGEFDDESNWQMVEYV------- 151 (248)
Q Consensus 82 ~~m~~~-~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~------- 151 (248)
+...+. |- .-+...|.+....=.++..++.|.-+|+-..+.-.+.. ...|..+.. +-..-|+-...+..
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~-fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTA-FEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHHhcchhhhHHHHhhhhhh
Confidence 776643 21 01122333333333345667777777766554422211 122222221 11122222222221
Q ss_pred -HHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcc-----hhhhHHhhhhhhccccchHHHHHHH
Q 039342 152 -FDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF-----RHNKLVWSVDVHRMWEGGAYTAISV 225 (248)
Q Consensus 152 -~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----t~~~li~~~~~~~~~~~g~~~~~~~ 225 (248)
++.+.+.+ .-|-.+|-..++.--..|+.+...++|++...+ ++|-.. -|--|.-++++-.-....+.+....
T Consensus 310 qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 310 QYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 23333332 236677778888888889999999999998754 566321 1222332333333345567777777
Q ss_pred HHHHHHH
Q 039342 226 WLNKMYE 232 (248)
Q Consensus 226 ~~~~m~~ 232 (248)
+++...+
T Consensus 388 vyq~~l~ 394 (677)
T KOG1915|consen 388 VYQACLD 394 (677)
T ss_pred HHHHHHh
Confidence 7777666
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.00057 Score=52.08 Aligned_cols=180 Identities=14% Similarity=0.073 Sum_probs=112.3
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
||+..++.++++.... -+..+.+..-....+.|+++.|.+-|+...+ .|..| ...||..+..| +.|+.+.|.+.
T Consensus 126 ~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~ 200 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKH 200 (459)
T ss_pred ccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHH
Confidence 3444455555555432 2344455555556688999999999988755 45554 45788766544 56889999999
Q ss_pred HHHHHHCCCC-------------cC--------HhhHHHHHHH-------HHhcCCHHHHHHHHHHHHHC-CCCchHHhH
Q 039342 81 FQEIKSSGIL-------------PS--------VMCYCMLLAV-------YAKSNRWDDAYGLLDEMHTN-RISNIHQVT 131 (248)
Q Consensus 81 ~~~m~~~~~~-------------p~--------~~~~~~li~~-------~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~ 131 (248)
.+++.++|++ || ...-+.++.+ +-+.++.+.|.+-+-.|.-. ....|..|.
T Consensus 201 iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 9999887654 22 1223344444 34668888888888877422 233456666
Q ss_pred HHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 039342 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189 (248)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 189 (248)
..+... ...+++-...+-+.-+.+...- ...||..++-.||+..-++.|.+++.+
T Consensus 281 HN~Al~--n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 281 HNQALM--NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHh--cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 655332 2223333333333333334332 468899999999999999999888875
No 114
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.87 E-value=0.00061 Score=42.51 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh
Q 039342 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105 (248)
Q Consensus 26 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 105 (248)
|..+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556667778888999999888886653 2344667778888888889999999888877653 2244677788888888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 039342 106 SNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 106 ~~~~~~a~~~~~~m~~~ 122 (248)
.|+.+.|...+.+..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 88888888888876543
No 115
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.86 E-value=0.0014 Score=43.38 Aligned_cols=100 Identities=11% Similarity=0.058 Sum_probs=74.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CcCHhhHHHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC--DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGI--LPSVMCYCML 99 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~l 99 (248)
.++......+.+.|++++|.+.|..+.+..- +.....+..+..++.+.|+++.|.+.|+.+..... ......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566677778888999999999998876431 11234566688888999999999999998876421 1124567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 100 LAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 100 i~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
..++.+.|+.++|...+++..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 788888899999999999887764
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.86 E-value=0.0047 Score=53.86 Aligned_cols=133 Identities=8% Similarity=0.011 Sum_probs=101.8
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhH
Q 039342 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE-RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCY 96 (248)
Q Consensus 19 ~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~ 96 (248)
...++..+-.|-....+.|+.++|..+++...+. .||. .....+...+.+.+++++|....++..+.. | +....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHH
Confidence 3446778888888888899999999999998764 5655 455677888999999999999999988763 4 55677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHhHHHHhcccccccchHHHHHHHHHHHHhc
Q 039342 97 CMLLAVYAKSNRWDDAYGLLDEMHTNRISNI-HQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 97 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
..+-.++.+.|+.++|..+|++....+ |+ ...+...-.. +...|+.++|...|+...+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~-l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQS-LTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh
Confidence 788888889999999999999998744 33 3333333333 66778888888888887665
No 117
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0079 Score=50.06 Aligned_cols=216 Identities=13% Similarity=0.047 Sum_probs=126.2
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.+.-..+...+ +-+...+.+=+-+..+.+.+++|+.+.+.-.. ...+.+-+--=..+..+.++.|+|...+
T Consensus 26 ~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 67888888888888765 34567777778888888999988855444211 0111111111234445788899998888
Q ss_pred HHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCC
Q 039342 82 QEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY 160 (248)
Q Consensus 82 ~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 160 (248)
+ |..+ +..+-..--..+-+.+++++|+.+|+.+.+++..--..-...-+.+.. .+.. ...+.....
T Consensus 103 ~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~-~~~~q~v~~ 169 (652)
T KOG2376|consen 103 K-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQ-VQLLQSVPE 169 (652)
T ss_pred h-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------Hhhh-HHHHHhccC
Confidence 7 3333 333555666677889999999999999987765443332222222100 1111 113334444
Q ss_pred CCCHHHHHHHHH---HHHhcCchHHHHHHHHHHHHCC---CCC-C--cchhhhHHhh---hhhhccccchHHHHHHHHHH
Q 039342 161 GLGMRFYNALLE---ALWCLGLRERAARVLDEATKRG---LFP-E--LFRHNKLVWS---VDVHRMWEGGAYTAISVWLN 228 (248)
Q Consensus 161 ~p~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~g---~~p-~--~~t~~~li~~---~~~~~~~~~g~~~~~~~~~~ 228 (248)
.| ..+|..+.+ .+...|++.+|++++....+-+ +.- | ..-+..-+.. =+.-.+-..|+-+++..++.
T Consensus 170 v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 170 VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 44 445555554 4556899999999998873211 000 0 0111111111 11133456788889999888
Q ss_pred HHHHHH
Q 039342 229 KMYEMF 234 (248)
Q Consensus 229 ~m~~~~ 234 (248)
......
T Consensus 249 ~~i~~~ 254 (652)
T KOG2376|consen 249 DIIKRN 254 (652)
T ss_pred HHHHhc
Confidence 887774
No 118
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.85 E-value=5.8e-05 Score=47.07 Aligned_cols=47 Identities=30% Similarity=0.458 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 039342 37 GRFEEAIKAYVEMEKVRC-DPNERTLEAVLSVYCFAGLVDESKEQFQE 83 (248)
Q Consensus 37 ~~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 83 (248)
|+++.|+.+++++.+..- .|+...+-.+-.+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444455555555443321 11222233344455555555555555544
No 119
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.82 E-value=0.0057 Score=53.18 Aligned_cols=222 Identities=14% Similarity=0.100 Sum_probs=134.6
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFR--QGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 79 (248)
+++..|.+....+.+.- |+ ..|..++.++. +.|+.++|..+++.....+.. |..|...+-.+|...++.++|..
T Consensus 23 ~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 56778888888765432 43 34555666554 679999999999988766654 88999999999999999999999
Q ss_pred HHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccc----ccc-----chHHHHHH
Q 039342 80 QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF----DDE-----SNWQMVEY 150 (248)
Q Consensus 80 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~----~~~-----~~~~~a~~ 150 (248)
+|++..+. .|+......+..+|+|.+++.+-.++--+|.+ ..+-....|++++.-.. ... --...|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99998875 57777788888899998887654444333332 22222334444433211 111 12345556
Q ss_pred HHHHHHhcC-CCCCHHHHHHHHHHHHhcCchHHHHHHHHH-HHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHH
Q 039342 151 VFDKLNCEG-YGLGMRFYNALLEALWCLGLRERAARVLDE-ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLN 228 (248)
Q Consensus 151 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~ 228 (248)
.++.+.+.+ ..-+..-...-...+-..|.+++|.+++.. ..+.-..- +.-+......-+...+++.+..++..
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~-----~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSA-----NLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHHHhcChHHHHHHHH
Confidence 666666554 222222223333445567889999999843 33321111 11111122233445556666666665
Q ss_pred HHHHHHH
Q 039342 229 KMYEMFM 235 (248)
Q Consensus 229 ~m~~~~~ 235 (248)
++.+.|-
T Consensus 251 ~Ll~k~~ 257 (932)
T KOG2053|consen 251 RLLEKGN 257 (932)
T ss_pred HHHHhCC
Confidence 5555543
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.81 E-value=0.001 Score=45.40 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=76.9
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.+.|+...+.+ +.+...|..+-..+.+.|++++|...++...+.+ +.+...+..+-..|...|++++|...|
T Consensus 31 ~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 108 (135)
T TIGR02552 31 GRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKAL 108 (135)
T ss_pred ccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78999999999987755 3478889999999999999999999999987664 456777888888999999999999999
Q ss_pred HHHHHCCCCcCHhhHHH
Q 039342 82 QEIKSSGILPSVMCYCM 98 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~ 98 (248)
+...+. .|+...+..
T Consensus 109 ~~al~~--~p~~~~~~~ 123 (135)
T TIGR02552 109 DLAIEI--CGENPEYSE 123 (135)
T ss_pred HHHHHh--ccccchHHH
Confidence 998875 455544443
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.79 E-value=0.0044 Score=51.07 Aligned_cols=150 Identities=9% Similarity=0.050 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHH
Q 039342 39 FEEAIKAYVEMEKV-RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLL 116 (248)
Q Consensus 39 ~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 116 (248)
.+.....++++... .+.|+ .+|...|+.-.|..-++.|+.+|.+.++.+..+ .+.+++++|.-||. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 55566666666443 45555 478888999999999999999999999887777 78899999998875 6778899999
Q ss_pred HHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG--MRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 117 ~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
+--...- ++...|..--..++..-++-..+..+|+.....++.|| ...|..+|+.=..-|++..+.++-+++..
T Consensus 425 eLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8643321 23323322211223334444678889999888866665 46799999999999999999998887653
No 122
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.77 E-value=0.01 Score=48.96 Aligned_cols=153 Identities=12% Similarity=0.158 Sum_probs=115.1
Q ss_pred ChhHHHHHHHHHHHC-CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-HhHHHHhcccccccchHHHHHH
Q 039342 73 LVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH-QVTGQMIKGEFDDESNWQMVEY 150 (248)
Q Consensus 73 ~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 150 (248)
..+...++++++... .+.| +.+|-..|+.--|..-++.|..+|.+.++.+..+.. .+..+++. +-..++.+.|.+
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE--y~cskD~~~Afr 422 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME--YYCSKDKETAFR 422 (656)
T ss_pred hhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH--HHhcCChhHHHH
Confidence 366777777777654 3344 567888999999999999999999999999998844 44455555 445567799999
Q ss_pred HHHHHHh-cCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHH
Q 039342 151 VFDKLNC-EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNK 229 (248)
Q Consensus 151 ~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~ 229 (248)
+|+.=.. .|- ++.--...++-+...++-..+..+|++....++.|+. ..-||.-++.--+.-|++..+.++-++
T Consensus 423 IFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k---s~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 423 IFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK---SKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh---hHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9986433 332 3344467888888999999999999999988777765 344555555888889999988888877
Q ss_pred HHHH
Q 039342 230 MYEM 233 (248)
Q Consensus 230 m~~~ 233 (248)
+..+
T Consensus 498 ~~~a 501 (656)
T KOG1914|consen 498 RFTA 501 (656)
T ss_pred HHHh
Confidence 7665
No 123
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.72 E-value=8.2e-05 Score=46.37 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 2 GLYKECQAILSRMSESGV-ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~-~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
|+++.|+.+|+++.+... .++...+-.+-.++.+.|++++|..+++. .+.+. .+....-.+-.+|.+.|++++|.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 788999999999887543 22455566688889999999999999988 22221 2224444557888899999999998
Q ss_pred HHH
Q 039342 81 FQE 83 (248)
Q Consensus 81 ~~~ 83 (248)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.011 Score=44.09 Aligned_cols=150 Identities=13% Similarity=0.069 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH-hhHHHHHHHHHhcCCHH
Q 039342 37 GRFEEAIKAYVEMEK---VR-CDPNERT-LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV-MCYCMLLAVYAKSNRWD 110 (248)
Q Consensus 37 ~~~~~a~~~~~~m~~---~~-~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~ 110 (248)
.+.++..+++.++.. +| ..++..+ |..++-+..-.|+.+.|...++++.+.- |.+ .+-..=---+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 345566666655532 23 4455432 3344555555666666666666665442 222 11111111122345666
Q ss_pred HHHHHHHHHHHCCCCchHHhHH-HHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 039342 111 DAYGLLDEMHTNRISNIHQVTG-QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189 (248)
Q Consensus 111 ~a~~~~~~m~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 189 (248)
+|+++++.+.+.+ |++..+. .-+.. ....|..-.|.+-+....+. +..|...|.-+-..|...|++++|.-.+++
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAi-lka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAI-LKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHH-HHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 6666666666555 3333322 11111 12222222333222222222 445666666666666666666666666666
Q ss_pred HHH
Q 039342 190 ATK 192 (248)
Q Consensus 190 m~~ 192 (248)
+.-
T Consensus 180 ~ll 182 (289)
T KOG3060|consen 180 LLL 182 (289)
T ss_pred HHH
Confidence 543
No 125
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.67 E-value=0.032 Score=50.86 Aligned_cols=232 Identities=12% Similarity=0.011 Sum_probs=136.8
Q ss_pred CCchHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhc
Q 039342 1 GGLYKECQAILSRMSESGVARN----SDSFNAVIEAFRQGGRFEEAIKAYVEMEKV----RC-DPNERTLEAVLSVYCFA 71 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~----~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~t~~~ll~~~~~~ 71 (248)
.|++++|...+++..+.-...+ ....+.+-..+...|++++|...+.+.... |- .+-..++..+-..+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 3788999999988765211112 134455666677899999999998887532 11 11123445566678889
Q ss_pred CChhHHHHHHHHHHH----CCCC--c-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCchH-HhHHHHhcccccc
Q 039342 72 GLVDESKEQFQEIKS----SGIL--P-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR--ISNIH-QVTGQMIKGEFDD 141 (248)
Q Consensus 72 g~~~~a~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~-~~~~~~l~~~~~~ 141 (248)
|+++.|...+++..+ .+.. | ....+..+-..+...|++++|...+.+..... ..+.. ......+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999999887654 2221 1 22334455556777899999999988765421 11211 1112222223456
Q ss_pred cchHHHHHHHHHHHHhc----CCCCCHHH--HHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccc
Q 039342 142 ESNWQMVEYVFDKLNCE----GYGLGMRF--YNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215 (248)
Q Consensus 142 ~~~~~~a~~~~~~m~~~----~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 215 (248)
.|+++.|...+...... +..+.... -...+..+...|+.+.|...+........... .. ...........+.
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~-~~~~~~~~a~~~~ 702 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN-HF-LQGQWRNIARAQI 702 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc-hh-HHHHHHHHHHHHH
Confidence 78888888888776542 11111101 01123445668899999999877543211111 11 1111222335667
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 039342 216 EGGAYTAISVWLNKMYEMF 234 (248)
Q Consensus 216 ~~g~~~~~~~~~~~m~~~~ 234 (248)
..|+.+++...+++..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 703 LLGQFDEAEIILEELNENA 721 (903)
T ss_pred HcCCHHHHHHHHHHHHHHH
Confidence 7888899988888877654
No 126
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.035 Score=49.01 Aligned_cols=162 Identities=22% Similarity=0.276 Sum_probs=83.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE--AVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLA 101 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~ 101 (248)
.|--+-++|-..|++++|...|.+-.+. .||.+++. -+-..|.+.|+++.+...|+.+.+. .| +..+..++-.
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHh
Confidence 3444555555556666665555444322 33332222 2445555566666666666555543 23 2334444444
Q ss_pred HHHhcC----CHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHH----HHHHHhcCCCCCHHHHHHHHHH
Q 039342 102 VYAKSN----RWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYV----FDKLNCEGYGLGMRFYNALLEA 173 (248)
Q Consensus 102 ~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~li~~ 173 (248)
.|+..+ ..+.|..++.+-.+.- |...--+..+...+.. ++....... .+.+...+-.+.+...|.+-..
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 444332 2344444444433322 1111111111111222 222222333 3345556666778889999999
Q ss_pred HHhcCchHHHHHHHHHHHHC
Q 039342 174 LWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~ 193 (248)
....|++.+|...|......
T Consensus 462 hf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhh
Confidence 99999999999999987654
No 127
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.66 E-value=0.0013 Score=51.07 Aligned_cols=142 Identities=9% Similarity=0.029 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcc
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~ 137 (248)
.+|..++....+.+..+.|..+|.+.++.+ +........+++.. ...++.+.|..+|+...+. ...+...+...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888999999998887543 23333444444433 3346677799999887764 22333334444433
Q ss_pred cccccchHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHH
Q 039342 138 EFDDESNWQMVEYVFDKLNCEGYGLG---MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206 (248)
Q Consensus 138 ~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 206 (248)
....++.+.+..+|+..... +.++ ...|...++.=.+.|+++.+.++.+++.+. .|+......++
T Consensus 80 -l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 80 -LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp -HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred -HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 44566788888888887765 3222 247888888888888888888888888764 55544444444
No 128
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.66 E-value=0.0013 Score=44.27 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=18.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEM 49 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m 49 (248)
|..++.++|.++++.|+.+....+++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 3456667777777777777666666544
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.62 E-value=0.021 Score=50.89 Aligned_cols=191 Identities=10% Similarity=0.031 Sum_probs=115.8
Q ss_pred CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChhHHHHH---------------
Q 039342 18 GVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL-EAVLSVYCFAGLVDESKEQ--------------- 80 (248)
Q Consensus 18 g~~~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~g~~~~a~~~--------------- 80 (248)
.+.| +...+..|+..+...+++++|.++.+.-.+. .|+...+ -.+-..+.+.++.+.+..+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHH
Confidence 3443 5778999999999999999999999966544 3443222 2222245555555555444
Q ss_pred ---HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHH-hHHHHhcccccccchHHHHHHHHHHHH
Q 039342 81 ---FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ-VTGQMIKGEFDDESNWQMVEYVFDKLN 156 (248)
Q Consensus 81 ---~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~ 156 (248)
...|.+. .-+...+-.+..+|-+.|+.++|..++++..+.. |++. ..+.+-.. +... +.++|..++....
T Consensus 103 e~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~-~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 103 EHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATS-YEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHH-HHHh-hHHHHHHHHHHHH
Confidence 2222221 1133566777778888899999999999998877 5444 44444433 5555 8888888776654
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhh----------------hhhccccchHH
Q 039342 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV----------------DVHRMWEGGAY 220 (248)
Q Consensus 157 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~----------------~~~~~~~~g~~ 220 (248)
.. +...+++..+.++|.++... .|+...+-..+... +-..|-+..++
T Consensus 177 ~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 177 YR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred HH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Confidence 43 55555666666666666553 23322221111111 11456666777
Q ss_pred HHHHHHHHHHHHH
Q 039342 221 TAISVWLNKMYEM 233 (248)
Q Consensus 221 ~~~~~~~~~m~~~ 233 (248)
+++..+|+...+.
T Consensus 240 ~~~i~iLK~iL~~ 252 (906)
T PRK14720 240 DEVIYILKKILEH 252 (906)
T ss_pred hHHHHHHHHHHhc
Confidence 7777777776654
No 130
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.61 E-value=0.0053 Score=47.64 Aligned_cols=131 Identities=12% Similarity=0.072 Sum_probs=92.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV-YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
.+|..+|...-+.+..+.|..+|.+.++.+ ..+...|-..... |...++.+.|.++|+...+. +..+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578899999999999999999999998543 2333444433333 33356777799999998765 44577889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCchH---HhHHHHhcccccccchHHHHHHHHHHHHhc
Q 039342 103 YAKSNRWDDAYGLLDEMHTNRISNIH---QVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
+.+.++.+.|..+|++.... +.+.. ..|...+.- -...|+++.+..+.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~f-E~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEF-ESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHH-HHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998765 33332 355555553 45667888888888887774
No 131
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.59 E-value=0.0036 Score=41.39 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=69.7
Q ss_pred CchHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHH
Q 039342 2 GLYKECQAILSRMSESGV--ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR--CDPNERTLEAVLSVYCFAGLVDES 77 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~--~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a 77 (248)
|++++|.+.|..+.+... ......+..+...+.+.|+++.|...|+...... -+.....+..+..++.+.|+.++|
T Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A 95 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKA 95 (119)
T ss_pred CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHH
Confidence 789999999999976432 1124567778999999999999999999987643 112356677888899999999999
Q ss_pred HHHHHHHHHCC
Q 039342 78 KEQFQEIKSSG 88 (248)
Q Consensus 78 ~~~~~~m~~~~ 88 (248)
.+.++++.+..
T Consensus 96 ~~~~~~~~~~~ 106 (119)
T TIGR02795 96 KATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHC
Confidence 99999998763
No 132
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.57 E-value=0.013 Score=49.94 Aligned_cols=185 Identities=14% Similarity=0.127 Sum_probs=137.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 103 (248)
..=..+-..+...|-..+|..++++.. .|.-+|.+|...|+..+|..+..+..++ +||+..|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 333445667777888888998888864 5788999999999999999999888774 68999999999998
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHH
Q 039342 104 AKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183 (248)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 183 (248)
....-+++|.++.+..... ...+... . ..+.++++.+.+.++.-.+... .-..+|-..-.+..+.++++.|
T Consensus 468 ~d~s~yEkawElsn~~sar-----A~r~~~~--~-~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-----AQRSLAL--L-ILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-----HHHhhcc--c-cccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHH
Confidence 8888899999999875432 1111000 1 2336788888888876554432 2457777788888889999999
Q ss_pred HHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHH
Q 039342 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234 (248)
Q Consensus 184 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~ 234 (248)
.+.|..... ..|| +..-|+-+-.+|.+.|+-.++.+.+.+-.+-.
T Consensus 539 v~aF~rcvt--L~Pd----~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPD----NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhh--cCCC----chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999998765 4676 44445555588999999999888887765544
No 133
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.56 E-value=0.00063 Score=57.99 Aligned_cols=104 Identities=13% Similarity=0.225 Sum_probs=69.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHH
Q 039342 104 AKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183 (248)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 183 (248)
.....|.+|+.+++.+++.. +..-|...+...|...|+++.|+++|.+ ...++-.|..|.+.|+|.+|
T Consensus 743 i~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e---------~~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTE---------ADLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHh---------cchhHHHHHHHhccccHHHH
Confidence 45567888888888887664 3344566666668899999999998875 23478889999999999999
Q ss_pred HHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHH
Q 039342 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226 (248)
Q Consensus 184 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~ 226 (248)
.++-.+.... +.....|-.-. .-+-++|++.+++++
T Consensus 811 ~kla~e~~~~--e~t~~~yiaka-----edldehgkf~eaeql 846 (1636)
T KOG3616|consen 811 FKLAEECHGP--EATISLYIAKA-----EDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHHHhcCc--hhHHHHHHHhH-----HhHHhhcchhhhhhe
Confidence 9987765422 22333332222 334455555555543
No 134
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.54 E-value=0.0014 Score=44.03 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH---------------CCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039342 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKS---------------SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121 (248)
Q Consensus 57 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~---------------~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 121 (248)
|..++..+|.++++.|+++....+.+..=. ....|+..+..+++.+|+.++++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 567899999999999999999998876521 23457888888888888888888888888888754
Q ss_pred -CCCCchHHhHHHHhccc
Q 039342 122 -NRISNIHQVTGQMIKGE 138 (248)
Q Consensus 122 -~~~~~~~~~~~~~l~~~ 138 (248)
.+++.+..++..++.-.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 35555666666666543
No 135
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.0042 Score=49.95 Aligned_cols=96 Identities=10% Similarity=0.062 Sum_probs=75.8
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|++.|++..+... -+...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+-.+|...|+++.|...
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4789999999999887543 357788888889999999999999999987754 34667788888899999999999999
Q ss_pred HHHHHHCCCCcCHhhHHHHH
Q 039342 81 FQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li 100 (248)
|++..+. .|+.......+
T Consensus 93 ~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 93 LEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHh--CCCCHHHHHHH
Confidence 9998875 45544444443
No 136
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.52 E-value=0.0011 Score=45.98 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCchHHhH
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIHQVT 131 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~~ 131 (248)
....++..+...|+++.|..+.+.+.... +.+...|..+|.+|...|+...|.+.|+++. +-|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45566667777777777777777776542 2256677777777777777777777777663 34666665543
No 137
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.041 Score=45.82 Aligned_cols=213 Identities=15% Similarity=0.084 Sum_probs=142.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++.+|.-.|+...+... -+...|--|=..-+.+++-..|+..+++..+.. +-|....-.|--.|...|.-..|...+
T Consensus 299 G~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred CCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 678888888888776542 367788888888888888888988888887653 234455666777788888888888888
Q ss_pred HHHHHCCCC-----c---CHhhHHHHHHHHHhcCCHHHHHHHHHHH-HHCC--CCchHHhHHHHhcccccccchHHHHHH
Q 039342 82 QEIKSSGIL-----P---SVMCYCMLLAVYAKSNRWDDAYGLLDEM-HTNR--ISNIHQVTGQMIKGEFDDESNWQMVEY 150 (248)
Q Consensus 82 ~~m~~~~~~-----p---~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (248)
+.......+ + +...-+. ..+.....+....++|-++ ++.+ +.|+....-.+| |...+.++.+..
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL---y~ls~efdraiD 451 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL---YNLSGEFDRAVD 451 (579)
T ss_pred HHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH---HhcchHHHHHHH
Confidence 776543210 0 0000000 2222233344455555554 3444 445555444444 556788999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcc--hhhhHHhhhhhhccccchHHHHHHHHHH
Q 039342 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF--RHNKLVWSVDVHRMWEGGAYTAISVWLN 228 (248)
Q Consensus 151 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~g~~~~~~~~~~ 228 (248)
.|+........ |..+||-|-..++...+..+|...|++..+ ++|+-+ -||.-| .|...|.+.+|...|=
T Consensus 452 cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgI------S~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 452 CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGI------SCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhh------hhhhhhhHHHHHHHHH
Confidence 99988776543 678899999999999999999999999876 466532 355544 5667788888777554
Q ss_pred HH
Q 039342 229 KM 230 (248)
Q Consensus 229 ~m 230 (248)
+-
T Consensus 523 ~A 524 (579)
T KOG1125|consen 523 EA 524 (579)
T ss_pred HH
Confidence 43
No 138
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.47 E-value=0.00084 Score=39.76 Aligned_cols=50 Identities=20% Similarity=0.271 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 039342 36 GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86 (248)
Q Consensus 36 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 86 (248)
.|++++|.++|+...+.. +-+...+-.+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444443332 12333444444444444444444444444443
No 139
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.46 E-value=0.0058 Score=49.20 Aligned_cols=101 Identities=11% Similarity=0.017 Sum_probs=82.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHH
Q 039342 31 EAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110 (248)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 110 (248)
..+...|+++.|++.|++..+.. +-+...|..+-.+|.+.|++++|...+++..+.. +.+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 45567899999999999998764 3466788888899999999999999999998763 226678888999999999999
Q ss_pred HHHHHHHHHHHCCCCchHHhHHHHh
Q 039342 111 DAYGLLDEMHTNRISNIHQVTGQMI 135 (248)
Q Consensus 111 ~a~~~~~~m~~~~~~~~~~~~~~~l 135 (248)
+|+..|++..+.. |+...+...+
T Consensus 88 eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHH
Confidence 9999999988654 5555554444
No 140
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.43 E-value=0.0021 Score=48.76 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=79.9
Q ss_pred CCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------ChhHHH
Q 039342 20 ARNSDSFNAVIEAFRQG-----GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG----------------LVDESK 78 (248)
Q Consensus 20 ~~~~~~y~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g----------------~~~~a~ 78 (248)
+.|-.+|-+.+..|... +.++-....++.|++-|+.-|..+|+.||+.+-+-. +-+=+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 46778888888888754 678888889999999999999999999999875533 234467
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHhcCC-HHHHHHHHHHH
Q 039342 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNR-WDDAYGLLDEM 119 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m 119 (248)
.++++|...|+.||..+-..+++++.+.+- ..+..+++--|
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 899999999999999999999999998875 33344444333
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.43 E-value=0.0036 Score=38.87 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120 (248)
Q Consensus 62 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 120 (248)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.+++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555554431 1122344444444444455555555544443
No 142
>PLN02789 farnesyltranstransferase
Probab=97.41 E-value=0.041 Score=43.54 Aligned_cols=187 Identities=8% Similarity=-0.083 Sum_probs=116.6
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh--hHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV--DESK 78 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~--~~a~ 78 (248)
++.++|+.+..++.+... -+..+|+.--..+.+.| ++++++..++++.+.+ +-+..+|+.--..+.+.|+. +++.
T Consensus 51 e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 567889999998876332 23456665555556666 6789999999987765 34445676555555556653 6778
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHH-Hhcccccccc----hHHHHHHHHH
Q 039342 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ-MIKGEFDDES----NWQMVEYVFD 153 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-~l~~~~~~~~----~~~~a~~~~~ 153 (248)
++++.+.+... -+-.+|+..-..+.+.|+++++++.++++.+.+......-.+. .+.......+ ..+.......
T Consensus 129 ~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 129 EFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 88888876542 2678888888888888999999999999988764433322221 1211111111 1244555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhc----CchHHHHHHHHHHHH
Q 039342 154 KLNCEGYGLGMRFYNALLEALWCL----GLRERAARVLDEATK 192 (248)
Q Consensus 154 ~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~ 192 (248)
........ |...|+.+-..+... ++..+|.+.+.+..+
T Consensus 208 ~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 208 DAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 55544332 566677666666652 344567777777555
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.36 E-value=0.1 Score=46.80 Aligned_cols=210 Identities=10% Similarity=0.056 Sum_probs=131.0
Q ss_pred CchHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHH------------------HHHHHHcCCCCCHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNS-DSFNAVIEAFRQGGRFEEAIKA------------------YVEMEKVRCDPNERTLE 62 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~-~~y~~li~~~~~~~~~~~a~~~------------------~~~m~~~~~~p~~~t~~ 62 (248)
|++++|.++.+...+. .|+. ..|-.+-..+.+.++.+.+..+ ...|.+ ..-+...+-
T Consensus 45 ~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~ 120 (906)
T PRK14720 45 NLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILL--YGENKLALR 120 (906)
T ss_pred CCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHh--hhhhhHHHH
Confidence 6788999998866553 2432 2233222255566666555444 111111 111224666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CchHHhHHHHhcc
Q 039342 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-----SNIHQVTGQMIKG 137 (248)
Q Consensus 63 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~~l~~ 137 (248)
.+..+|-+.|+.+++..+++++.+.. +-|+.+.|.+-..|+.. ++++|+.++.+....-+ ..-...|..++..
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhc
Confidence 77788889999999999999999876 33788999999999999 99999999988754311 1112223333322
Q ss_pred cccccchHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhcccc
Q 039342 138 EFDDESNWQMVEYVFDKLNCE-GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWE 216 (248)
Q Consensus 138 ~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 216 (248)
...+.+.-.++.+.+... |..--..++-.+-..|-..++|+++..+++...+.. +-|.....-++.++. ..|..
T Consensus 199 ---~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~-~kY~~ 273 (906)
T PRK14720 199 ---NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK-EKYKD 273 (906)
T ss_pred ---CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH-HHccC
Confidence 233444555555555544 544456667777788889999999999999988642 113334444553333 44555
Q ss_pred chHHHH
Q 039342 217 GGAYTA 222 (248)
Q Consensus 217 ~g~~~~ 222 (248)
+..+++
T Consensus 274 ~~~~ee 279 (906)
T PRK14720 274 HSLLED 279 (906)
T ss_pred cchHHH
Confidence 445544
No 144
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.36 E-value=0.012 Score=41.80 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=69.4
Q ss_pred HHHHHHHH-HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 039342 7 CQAILSRM-SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP--NERTLEAVLSVYCFAGLVDESKEQFQE 83 (248)
Q Consensus 7 a~~~~~~m-~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~ 83 (248)
+...+..+ ...+-.-....|..+...+...|++++|+..|+........| ...+|..+-..+...|++++|...++.
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444 233333345667777777778888888888888876543222 234777788888888888888888888
Q ss_pred HHHCCCCcCHhhHHHHHHHHH-------hcCCHHHHHHHHH
Q 039342 84 IKSSGILPSVMCYCMLLAVYA-------KSNRWDDAYGLLD 117 (248)
Q Consensus 84 m~~~~~~p~~~~~~~li~~~~-------~~~~~~~a~~~~~ 117 (248)
..+.. +....++..+...+. +.|+++.|+..++
T Consensus 98 Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 98 ALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 77542 123445555555665 5556555544444
No 145
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.35 E-value=0.025 Score=49.34 Aligned_cols=171 Identities=12% Similarity=0.156 Sum_probs=91.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-C--------CCCCHHHHHHHHHHHHhcC
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-R--------CDPNERTLEAVLSVYCFAG 72 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-~--------~~p~~~t~~~ll~~~~~~g 72 (248)
|+.|.|.+-.+.++ +...|..|-+.|.+..+.+-|.-.+-.|... | -.|+ .+-.-+.-.....|
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 56666665555553 4567888888888888877776666666322 1 1222 22222233344567
Q ss_pred ChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHH
Q 039342 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVF 152 (248)
Q Consensus 73 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 152 (248)
.+++|+.+|.+-++ |..|=+.|-..|.|++|.++-+.= ...--..||...... +...++.+.|.+.|
T Consensus 815 MlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~---DRiHLr~Tyy~yA~~-Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 815 MLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETK---DRIHLRNTYYNYAKY-LEARRDIEAALEYY 881 (1416)
T ss_pred hHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhc---cceehhhhHHHHHHH-HHhhccHHHHHHHH
Confidence 77777777766554 334445566667777777665532 111122233332222 33344444444443
Q ss_pred HH-----------HHhc--------CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 153 DK-----------LNCE--------GYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 153 ~~-----------m~~~--------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
+. +.+. .-.-|...|...-..+-..|+.|.|+.+|...++
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 32 2111 0123445566666666667777777777776554
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.31 E-value=0.023 Score=40.57 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=68.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN--ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCM 98 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ 98 (248)
....|..+-..+...|++++|...|++..+..-.+. ...+..+...+.+.|++++|...+++..+. .| +...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 345677788888899999999999999876543332 467888888999999999999999988775 23 4556666
Q ss_pred HHHHHHhcCCHHHHHH
Q 039342 99 LLAVYAKSNRWDDAYG 114 (248)
Q Consensus 99 li~~~~~~~~~~~a~~ 114 (248)
+...+...|+...+..
T Consensus 112 lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 112 IAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHHcCChHhHhh
Confidence 7777777776544443
No 147
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.067 Score=47.87 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=79.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 103 (248)
..|..+-.+-.+.|.+.+|.+-|-+ .-|+..|.-++..+.+.|.+++-.+.+...++..-.|. .=+.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHH
Confidence 4555555555555555555544433 24566788888888888888888888766666544443 445788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHH
Q 039342 104 AKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183 (248)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 183 (248)
++.+++.+.++++. | |+......+=.. |-..+.++.|.-+|.. ..-|.-+-..+...|++..|
T Consensus 1177 Akt~rl~elE~fi~-----g--pN~A~i~~vGdr-cf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-----G--PNVANIQQVGDR-CFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHhchHHHHHHHhc-----C--CCchhHHHHhHH-HhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 88888777666553 2 444444444333 3334455555555543 22344444444444444444
Q ss_pred H
Q 039342 184 A 184 (248)
Q Consensus 184 ~ 184 (248)
.
T Consensus 1240 V 1240 (1666)
T KOG0985|consen 1240 V 1240 (1666)
T ss_pred H
Confidence 3
No 148
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.28 E-value=0.0018 Score=38.25 Aligned_cols=62 Identities=19% Similarity=0.362 Sum_probs=50.1
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 65 (248)
.|++++|.++|+.+.+... -+...+..+..+|.+.|++++|.++++.+... .|+...|..++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4899999999999987543 37888889999999999999999999999776 47755555544
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.21 E-value=0.011 Score=41.14 Aligned_cols=99 Identities=7% Similarity=-0.095 Sum_probs=76.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
+....-.+-..+...|++++|..+|+.+..-. +-+..-|-.|-.+|-..|++++|...|........ -++..+-.+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 34455556666778899999999999987654 24445556677778888999999999998887653 36778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 039342 102 VYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~ 122 (248)
++...|+.+.|.+-|+.....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 899999999999999877654
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.21 E-value=0.024 Score=40.50 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=56.8
Q ss_pred CCchHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 039342 1 GGLYKECQAILSRMSESGVARN--SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~--~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 76 (248)
.|++++|...|++..+....+. ...|..+-..+.+.|++++|...+++..+.. +-+...+..+..++...|+...
T Consensus 48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 124 (172)
T PRK02603 48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYHKRGEKAE 124 (172)
T ss_pred cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHh
Confidence 3899999999999876543332 4688889999999999999999999987653 2345666667777777776433
No 151
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.046 Score=45.76 Aligned_cols=186 Identities=12% Similarity=0.100 Sum_probs=116.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHH--HHHHHH-
Q 039342 28 AVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM--LLAVYA- 104 (248)
Q Consensus 28 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--li~~~~- 104 (248)
+=++-+.+.|++++|.....++...+ +-|...+.+-+-+..+.+++++|..+.+.=. . ..+++. +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---~---~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG---A---LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---h---hhhcchhhHHHHHHH
Confidence 34566778899999999999998766 5566778888889999999999985544322 1 112222 356666
Q ss_pred -hcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHH
Q 039342 105 -KSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183 (248)
Q Consensus 105 -~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 183 (248)
+.+..|+|+..++ |..+.+.-...+=...+-+.++++++..+|+.+.+.+.. .+..-+++-+.. ...+
T Consensus 90 Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a--~~a~ 158 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLA--VAAA 158 (652)
T ss_pred HHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHH--HHHh
Confidence 6789999999998 333333322222223355788999999999999877543 222222221110 0011
Q ss_pred HHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHH
Q 039342 184 ARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFM 235 (248)
Q Consensus 184 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~ 235 (248)
... +.+......| ..||..+....+ .+...|++.+|+++++.-.+.+.
T Consensus 159 l~~-~~~q~v~~v~-e~syel~yN~Ac--~~i~~gky~qA~elL~kA~~~~~ 206 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVP-EDSYELLYNTAC--ILIENGKYNQAIELLEKALRICR 206 (652)
T ss_pred hhH-HHHHhccCCC-cchHHHHHHHHH--HHHhcccHHHHHHHHHHHHHHHH
Confidence 111 1233333344 346766665553 46789999999999988744443
No 152
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.20 E-value=0.06 Score=40.88 Aligned_cols=81 Identities=10% Similarity=0.104 Sum_probs=53.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE-RTL---EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC 97 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 97 (248)
+...+-..-..+.+.|++++|.+.|+.+...- |+. ..- -.+..++.+.++++.|...+++..+.-..-...-|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 34444344555567899999999999997753 333 222 345678899999999999999998753222233444
Q ss_pred HHHHHHH
Q 039342 98 MLLAVYA 104 (248)
Q Consensus 98 ~li~~~~ 104 (248)
..+.+.+
T Consensus 109 ~Y~~g~~ 115 (243)
T PRK10866 109 LYMRGLT 115 (243)
T ss_pred HHHHHHh
Confidence 4555543
No 153
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.18 E-value=0.0096 Score=45.27 Aligned_cols=117 Identities=14% Similarity=0.160 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHH-----hcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHH
Q 039342 55 DPNERTLEAVLSVYC-----FAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129 (248)
Q Consensus 55 ~p~~~t~~~ll~~~~-----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 129 (248)
+-|-.+|-..+..+. +.++++-.-..++.|++.|+.-|..+|+.||..+=+.. ..|.+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence 456667777766664 34677777888899999999999999999988765532 22332
Q ss_pred hHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchH-HHHHHHHHHH
Q 039342 130 VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE-RAARVLDEAT 191 (248)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~ 191 (248)
+|..+... |.+.. +-+..++++|...|+.||-.+-..+++++.+.+..- +...+.-.|.
T Consensus 127 vfQ~~F~H-YP~QQ--~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 127 VFQKVFLH-YPQQQ--NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhh-Cchhh--hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 33333333 44433 578899999999999999999999999999887532 3333333343
No 154
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.033 Score=43.83 Aligned_cols=173 Identities=11% Similarity=0.080 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--Hhc-------CChh
Q 039342 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY--CFA-------GLVD 75 (248)
Q Consensus 5 ~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~-------g~~~ 75 (248)
+.|++++-.+.+ +-| ..--.|+-.|.+.+++.+|..+.+++. +.++.-| ++++. ++. .+..
T Consensus 271 EgALqVLP~L~~--~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Ey--ilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 271 EGALQVLPSLMK--HIP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEY--ILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred ccHHHhchHHHh--hCh--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHH--HHHHHHHHHhhhhcCcHHHHH
Confidence 345555554443 112 223345556788888888888877653 2222222 23222 222 2355
Q ss_pred HHHHHHHHHHHCCCCcCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHH
Q 039342 76 ESKEQFQEIKSSGILPSV-MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154 (248)
Q Consensus 76 ~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 154 (248)
-|.+.|+-.-+++..-|+ .--.++...+.-..++|+++..++.++..=..-|...++ +..+ ....|++.+++++|-.
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQA-k~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQA-KLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHH-HHHhcChHHHHHHHhh
Confidence 566666555555554433 334455555566667777777777665443222222222 2222 4556677777777776
Q ss_pred HHhcCCCCCHHHHH-HHHHHHHhcCchHHHHHHHHHH
Q 039342 155 LNCEGYGLGMRFYN-ALLEALWCLGLRERAARVLDEA 190 (248)
Q Consensus 155 m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m 190 (248)
+....++ |..+|. .+.++|.+.+..+.|++++-++
T Consensus 419 is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 419 ISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 6655555 455554 4445777777777777776554
No 155
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.09 E-value=0.033 Score=42.77 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=68.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CcCHhhHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE----RTLEAVLSVYCFAGLVDESKEQFQEIKSSGI--LPSVMCYC 97 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~ 97 (248)
..|...+..+.+.|++++|...|+.+.+.- |+. ..+-.+-.+|...|++++|...|+.+.+.-. ......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 456666666677788999988888887652 332 4556678888888999999999888875411 11233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 98 MLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
.+...+...|+.++|..+|++..+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556777888888888888877653
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.08 E-value=0.018 Score=40.98 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=60.8
Q ss_pred CchHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcC
Q 039342 2 GLYKECQAILSRMSESGVAR--NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC-------FAG 72 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~--~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~-------~~g 72 (248)
|++++|+..|++.......+ ...+|..+-..+.+.|++++|.+.++...+.. +....++..+...+. +.|
T Consensus 49 g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g 127 (168)
T CHL00033 49 GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQG 127 (168)
T ss_pred CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcc
Confidence 78999999999987643322 24588889999999999999999999987652 333455666666666 777
Q ss_pred ChhHHHHHHHHH
Q 039342 73 LVDESKEQFQEI 84 (248)
Q Consensus 73 ~~~~a~~~~~~m 84 (248)
+++.|...+++-
T Consensus 128 ~~~~A~~~~~~a 139 (168)
T CHL00033 128 DSEIAEAWFDQA 139 (168)
T ss_pred cHHHHHHHHHHH
Confidence 877666655543
No 157
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=97.07 E-value=0.078 Score=41.47 Aligned_cols=132 Identities=17% Similarity=0.183 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CchHHhHHHHhccccccc-c
Q 039342 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAK--SN----RWDDAYGLLDEMHTNRI---SNIHQVTGQMIKGEFDDE-S 143 (248)
Q Consensus 74 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~~l~~~~~~~-~ 143 (248)
++...++++.|.+.|+.-+..+|-+-...... .. ...+|..+|+.|++... .++...+..++...-... .
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~ 157 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHH
Confidence 45556677777777777666655542222222 22 24567777777766542 234444444444311111 1
Q ss_pred hHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCc--hHHHHHHHHHHHHCCCCCCcchhhhH
Q 039342 144 NWQMVEYVFDKLNCEGYGLGMR--FYNALLEALWCLGL--RERAARVLDEATKRGLFPELFRHNKL 205 (248)
Q Consensus 144 ~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~l 205 (248)
-.+.++.+|+.+.+.|+..+-. ....++..+-.... ..++.++++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2356666777777766654322 22222222222111 34677777777777777776666544
No 158
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.06 E-value=0.13 Score=43.72 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=111.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
..|-..+....+.|++......|+.... .-+.--..+|...|......+-++-+..++++..+. ++..-+--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 4566666677777888888888877643 233334467888888888889999999999998874 34457888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCC------CCchHHhHHHHhcccccccc---hHHHHHHHHHHHHhcCCCCC--HHHHHHHH
Q 039342 103 YAKSNRWDDAYGLLDEMHTNR------ISNIHQVTGQMIKGEFDDES---NWQMVEYVFDKLNCEGYGLG--MRFYNALL 171 (248)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~--~~~~~~li 171 (248)
+++.+++++|-+.+....... .+.+...|..+..- ...+. .--....+++.+... -|| ...|++|.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl-is~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL-ISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH-HHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 999999999998887764321 12223333322211 11111 111222333333221 233 45689999
Q ss_pred HHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHH
Q 039342 172 EALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206 (248)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 206 (248)
+.|.+.|.+++|.++|++-.+. ..++.-|+.+.
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~if 288 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIF 288 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHH
Confidence 9999999999999999987664 33334444444
No 159
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.04 E-value=0.16 Score=43.11 Aligned_cols=126 Identities=11% Similarity=0.006 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 174 (248)
++--++..|-+.|+++.|+..++...+. .|+..-...+=...+...|.++.|..++++..+.+. ||...=.--....
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHH
Confidence 3445667777778888888777766543 355544443333335667777777777777666543 2333222344455
Q ss_pred HhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhh-----hhhccccchHHHHHHH
Q 039342 175 WCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV-----DVHRMWEGGAYTAISV 225 (248)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~-----~~~~~~~~g~~~~~~~ 225 (248)
.+.++.++|.++.....+.|. +...+-..+++. .-.+|.+.|++..|.+
T Consensus 450 LrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALK 503 (700)
T ss_pred HHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHH
Confidence 667778888888777777665 333333333222 2345555555544444
No 160
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.085 Score=39.64 Aligned_cols=186 Identities=16% Similarity=0.105 Sum_probs=114.0
Q ss_pred CchHHHHHHHHHHHH---cC-CCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 039342 2 GLYKECQAILSRMSE---SG-VARNSD-SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76 (248)
Q Consensus 2 g~~~~a~~~~~~m~~---~g-~~~~~~-~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 76 (248)
.+.++..+++.++.. .| ..++.. .|.-++-+....|+.+.|...++.+.+.= +-+...-..----+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 456777888877753 34 445543 45566666777788888888888886652 2222222222223345678888
Q ss_pred HHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHH
Q 039342 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN 156 (248)
Q Consensus 77 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 156 (248)
|.++++.+.+.. +.|.++|--=+...-..|+--+|++-+.+..+. +..|...|..+-.- |...+++++|...++++.
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaei-Y~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEI-YLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHH-HHhHhHHHHHHHHHHHHH
Confidence 888888888765 335666665555555666666777666666543 34556666666554 667788888888888877
Q ss_pred hcCCCCCHHH-HHHHHHHHHh---cCchHHHHHHHHHHHHC
Q 039342 157 CEGYGLGMRF-YNALLEALWC---LGLRERAARVLDEATKR 193 (248)
Q Consensus 157 ~~~~~p~~~~-~~~li~~~~~---~g~~~~a~~~~~~m~~~ 193 (248)
-. .|.... |..+-..+-- ..+...+.++|.+..+.
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 64 343333 3333333322 33566777777776653
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.02 E-value=0.0056 Score=35.80 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=24.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039342 32 AFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 32 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 85 (248)
.+.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++++|...|++..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555554443 2233444444445555555555555555444
No 162
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.095 Score=39.69 Aligned_cols=147 Identities=10% Similarity=-0.009 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhc---
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK--- 136 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~--- 136 (248)
.-++++..+.-.|.+.-...++.+.++..-+-++...+.+.+.--..|+.+.|...|++..+..-..+..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566777777888888899999998876566788888888888899999999999998776554444444444332
Q ss_pred -ccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhh
Q 039342 137 -GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209 (248)
Q Consensus 137 -~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 209 (248)
..+.-..++..+...+.++...+.+ |+...|.=.-+..-.|+..+|.+.++.|.+. .|...+.++++.++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNL 329 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHH
Confidence 2244456677777778777766433 4444454444444568899999999999875 78777778777665
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.99 E-value=0.015 Score=40.49 Aligned_cols=91 Identities=9% Similarity=-0.020 Sum_probs=68.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 039342 99 LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178 (248)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 178 (248)
+-.-+...|++++|.++|+.+.... |....+..-+-.++...|++++|...|......++ -|...+-.+-.++...|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 3334456788888888888776554 66666666666667778888888888888777764 36777888888899999
Q ss_pred chHHHHHHHHHHHH
Q 039342 179 LRERAARVLDEATK 192 (248)
Q Consensus 179 ~~~~a~~~~~~m~~ 192 (248)
+.+.|.+-|+....
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987654
No 164
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.97 E-value=0.026 Score=48.63 Aligned_cols=101 Identities=17% Similarity=0.293 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 039342 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 82 (248)
.|.+|+.+++.+..... -..-|.-+-..|+..|+++.|.++|-+- ..++-.|.+|.+.|+|+.|.++-+
T Consensus 747 ew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHH
Confidence 45556666665554321 2233555556666667777666666542 124556667777777776666654
Q ss_pred HHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 039342 83 EIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116 (248)
Q Consensus 83 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 116 (248)
+.. |...+...|-+-..-+-++|++.+|.++|
T Consensus 816 e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 816 ECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred Hhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 433 22223444444444444445444444443
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.97 E-value=0.0065 Score=35.50 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=47.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 64 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
+-..+.+.|++++|.+.|++..+.. +-+...+..+-..+...|++++|...|++..+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3456788999999999999998775 2267788888899999999999999999887543
No 166
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.96 E-value=0.12 Score=40.35 Aligned_cols=155 Identities=16% Similarity=0.192 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CChhHHHHHHHHHHHCCC---CcCHhhHHHHHHHHHhcCC-
Q 039342 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF--A----GLVDESKEQFQEIKSSGI---LPSVMCYCMLLAVYAKSNR- 108 (248)
Q Consensus 39 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~----g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~~- 108 (248)
+++...+++.|.+.|++-+..+|-+....... . ....+|.++|+.|++.-. .++..++..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56678889999999999998888664443333 2 247789999999997632 2456677777665 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCchHH--hHHHHhcccccccc--hHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCc-
Q 039342 109 ---WDDAYGLLDEMHTNRISNIHQ--VTGQMIKGEFDDES--NWQMVEYVFDKLNCEGYGLGMRFYNALLEAL-WCLGL- 179 (248)
Q Consensus 109 ---~~~a~~~~~~m~~~~~~~~~~--~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~- 179 (248)
.+.++.+|+.+.+.|...... ....++.- ..... ....+..+++.+++.|+++....|..+--.. ...+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL-~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~ 234 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILAL-SEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchH
Confidence 467888899999888776554 23333322 22222 2568888999999999998888877554333 33333
Q ss_pred --hHHHHHHHHHHHH-CCCC
Q 039342 180 --RERAARVLDEATK-RGLF 196 (248)
Q Consensus 180 --~~~a~~~~~~m~~-~g~~ 196 (248)
.+...++.+.+.+ .|+.
T Consensus 235 ~~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 235 KIVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHHHhhCcccC
Confidence 4455555555554 3433
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.94 E-value=0.059 Score=45.64 Aligned_cols=59 Identities=19% Similarity=0.116 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 119 (248)
..|..+--.+...|++++|...+++..+.+ |+...|..+-..+...|+.++|.+.+++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334333333333444444444444444432 34444444444444444444444444443
No 168
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.93 E-value=0.19 Score=42.09 Aligned_cols=199 Identities=15% Similarity=0.129 Sum_probs=142.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHH
Q 039342 33 FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDD 111 (248)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~ 111 (248)
+.+.|+..+|.-.|+...+.+ +-+...|.-|-......++-..|...+.+-.+. .| +....-.|--.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 457888999988888887664 446688888888888999989999998888775 45 66788888899999999999
Q ss_pred HHHHHHHHHHCCCCchHHhHH---HHh---cccccccchHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCchHHHH
Q 039342 112 AYGLLDEMHTNRISNIHQVTG---QMI---KGEFDDESNWQMVEYVFDKLN-CEGYGLGMRFYNALLEALWCLGLRERAA 184 (248)
Q Consensus 112 a~~~~~~m~~~~~~~~~~~~~---~~l---~~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~ 184 (248)
|++.|+.-.....+--..... ... .+ +........+.++|-++. +.+..+|..+...|--.|--.|++++|.
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s-~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKS-FLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcC-CCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 999998875443110000000 000 11 233334455555555554 4465678888888888888899999999
Q ss_pred HHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCCCCCcc
Q 039342 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLPQL 243 (248)
Q Consensus 185 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~~~ 243 (248)
+.|+.... ++|+ +.++|+-+-..++...+-++|...+++-.+. +|+.+-..
T Consensus 451 Dcf~~AL~--v~Pn----d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~R 501 (579)
T KOG1125|consen 451 DCFEAALQ--VKPN----DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVR 501 (579)
T ss_pred HHHHHHHh--cCCc----hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeee
Confidence 99999876 4787 6777777778888988999988888776554 66554433
No 169
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.93 E-value=0.21 Score=42.50 Aligned_cols=200 Identities=14% Similarity=0.068 Sum_probs=125.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|+-++|.+..+.-....+ .+.++|..+--.+....++++|.+.|......+ +-|...|.-+--.=++.|+++......
T Consensus 55 g~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 556677776666555443 356777777777777788888988888876654 345566766655566777777777777
Q ss_pred HHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CchHHhHHHHhccc-----ccccchHHHHHHHHHH
Q 039342 82 QEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVTGQMIKGE-----FDDESNWQMVEYVFDK 154 (248)
Q Consensus 82 ~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~ 154 (248)
.++.+. .| ....|....-++.-.|+...|..++++..+... .|+...+.....-. ....|..+.+.+.+..
T Consensus 133 ~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 133 NQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 777664 33 446688888888888999999999988876552 34444443221111 2234445555554443
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhh
Q 039342 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWS 208 (248)
Q Consensus 155 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 208 (248)
-... +.-....-.+-...+.+.+++++|..++..+... .||-.-|...+..
T Consensus 211 ~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 211 NEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEK 261 (700)
T ss_pred hhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHH
Confidence 2221 1111222234455677788888888888887765 5766666655543
No 170
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.92 E-value=0.22 Score=42.56 Aligned_cols=221 Identities=11% Similarity=0.083 Sum_probs=132.2
Q ss_pred CchHHHHHHHHHHHHcCCCC------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 039342 2 GLYKECQAILSRMSESGVAR------NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN---ERTLEAVLSVYCFAG 72 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~------~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g 72 (248)
|+..+-...+.+..+. +.| -...|..+-..|-..|+.+.|..+|++..+...+-= ..+|..--..=.+..
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 3444555556655432 222 124677888888889999999999998876554322 344444445555666
Q ss_pred ChhHHHHHHHHHHHCC-----------CC------cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHh
Q 039342 73 LVDESKEQFQEIKSSG-----------IL------PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135 (248)
Q Consensus 73 ~~~~a~~~~~~m~~~~-----------~~------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 135 (248)
+++.|.++.+...... .+ -+...|+..++---..|-++....+++++.+-.+.......|..+
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 7888877766554211 11 123345555555556678888888888888877665555554433
Q ss_pred cccccccchHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHh---cCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhh
Q 039342 136 KGEFDDESNWQMVEYVFDKLNCEGYGLG-MRFYNALLEALWC---LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDV 211 (248)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 211 (248)
- +..+..++.+.++++.=...=--|+ ...|+.-+.-+.+ ...++.|..+|++..+ |++|...-+--|+++-+-
T Consensus 520 f--LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 520 F--LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred H--HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 2 4456667788877765333211133 3345555555444 2368899999999887 788876555555555432
Q ss_pred hccccchHHHHHHHHHHH
Q 039342 212 HRMWEGGAYTAISVWLNK 229 (248)
Q Consensus 212 ~~~~~~g~~~~~~~~~~~ 229 (248)
. +.|....+..++++
T Consensus 597 E---e~GLar~amsiyer 611 (835)
T KOG2047|consen 597 E---EHGLARHAMSIYER 611 (835)
T ss_pred H---HhhHHHHHHHHHHH
Confidence 2 23555555555544
No 171
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.90 E-value=0.011 Score=40.90 Aligned_cols=58 Identities=9% Similarity=0.168 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHH-hHHHHhcccccccchHHHHHHHHHHH
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ-VTGQMIKGEFDDESNWQMVEYVFDKL 155 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m 155 (248)
+...++..+...|++++|....+.+.... |... .+..++.. +...|+...|.+.|+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~-~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRA-LAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHH-HHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHH-HHHCcCHHHHHHHHHHH
Confidence 34444444555555555555555554433 3322 33333333 44444455555555443
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.89 E-value=0.13 Score=43.61 Aligned_cols=143 Identities=12% Similarity=-0.019 Sum_probs=89.7
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCcC-HhhHHHHHHHHHhc--------CCHHHHHHHHHH
Q 039342 53 RCDPNERTLEAVLSVYCFAG-----LVDESKEQFQEIKSSGILPS-VMCYCMLLAVYAKS--------NRWDDAYGLLDE 118 (248)
Q Consensus 53 ~~~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~--------~~~~~a~~~~~~ 118 (248)
+.+.|...|...+.+..... ..+.|.++|++..+. .|+ ...|..+..++... .++..+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45677788888888765433 366888888888765 453 34444443333222 123344444444
Q ss_pred HHHCCCCc-hHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCC
Q 039342 119 MHTNRISN-IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197 (248)
Q Consensus 119 m~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 197 (248)
.......| +...+..+-.. ....|+++.|...+++..+.+ |+...|..+-..+...|+.++|.+.+.+..+ +.|
T Consensus 410 a~al~~~~~~~~~~~ala~~-~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQ-ALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 33321122 22333322111 334688999999999988876 6788999999999999999999999998765 356
Q ss_pred Ccchh
Q 039342 198 ELFRH 202 (248)
Q Consensus 198 ~~~t~ 202 (248)
...||
T Consensus 485 ~~pt~ 489 (517)
T PRK10153 485 GENTL 489 (517)
T ss_pred CCchH
Confidence 55553
No 173
>PLN02789 farnesyltranstransferase
Probab=96.83 E-value=0.17 Score=40.08 Aligned_cols=140 Identities=6% Similarity=-0.019 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCcCHhhHHHHHHHH
Q 039342 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE-RTLEAVLSVYCFAG-LVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103 (248)
Q Consensus 26 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 103 (248)
++.+-..+...++.++|+.+.++..+.. |+. ..|+.--.++.+.| +++++...++++.+.... +..+|+.--..+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 3333344444455556666655554432 222 23333323333334 345556655555543211 223344333333
Q ss_pred HhcCC--HHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039342 104 AKSNR--WDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALL 171 (248)
Q Consensus 104 ~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 171 (248)
.+.|+ .++++.+++++.+.. |.......-....+...+.++.+.+.++.+.+.+.. +...|+...
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~ 183 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRY 183 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHH
Confidence 33333 244555555555443 222111111111123334455666666665555444 334444333
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.82 E-value=0.064 Score=35.77 Aligned_cols=88 Identities=24% Similarity=0.132 Sum_probs=53.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----HhhHHHHHHHHH
Q 039342 31 EAFRQGGRFEEAIKAYVEMEKVRCDPNE--RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPS----VMCYCMLLAVYA 104 (248)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~ 104 (248)
.++-..|+.++|..+|++....|..... ..+-.+-+.+...|++++|..++++..... |+ ......+-.++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 3455567777777777777777765442 344445566777777777777777766531 22 112222233556
Q ss_pred hcCCHHHHHHHHHHHH
Q 039342 105 KSNRWDDAYGLLDEMH 120 (248)
Q Consensus 105 ~~~~~~~a~~~~~~m~ 120 (248)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777777665543
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.82 E-value=0.12 Score=40.25 Aligned_cols=169 Identities=11% Similarity=0.189 Sum_probs=101.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCc-CH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKV----RCDP-NERTLEAVLSVYCFAGLVDESKEQFQEIKS----SGILP-SV 93 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~ 93 (248)
..|.-.-..|...+++++|.+.|.+..+. +-+. -...|.....+|.+. ++++|.+.+++..+ .|-.. -.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 46777777888889999998888876322 2111 123444445555444 88888888877653 34221 23
Q ss_pred hhHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCC-----CCC
Q 039342 94 MCYCMLLAVYAKS-NRWDDAYGLLDEMHT----NRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY-----GLG 163 (248)
Q Consensus 94 ~~~~~li~~~~~~-~~~~~a~~~~~~m~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~p~ 163 (248)
.++..+-..|-.. |+++.|++.|++-.+ .+.+....-+..-+...+...++++.|..+|++...... +++
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 5677777788888 899999999887643 342222222222222336677899999999998876532 222
Q ss_pred HH-HHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 164 MR-FYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 164 ~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
.. .|-..+-++...|+...|.+.+++....
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22 2333444666678999999999987653
No 176
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.19 Score=39.79 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=57.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHH-HHHHHHHhcCC
Q 039342 30 IEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC-MLLAVYAKSNR 108 (248)
Q Consensus 30 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~~~ 108 (248)
-+.+.-.-++++++-.++..+.-=..-|...| .+..+++..|.+.+|+++|-+.....++ |..+|- .|.++|.+++.
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCC
Confidence 33333344455555555554433222222222 3455556666666666666554433333 333443 33445556666
Q ss_pred HHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 109 WDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 109 ~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
++.|+.++-.+ ..+....+.-.+|..-|-..+.+--+.+.|+.+...+
T Consensus 444 P~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 444 PQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred chHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 66665555433 2222333333444433444444444555555554443
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.74 E-value=0.084 Score=35.22 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=71.8
Q ss_pred CchHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChh
Q 039342 2 GLYKECQAILSRMSESGVARN--SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN----ERTLEAVLSVYCFAGLVD 75 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~--~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~~~ 75 (248)
|+.++|..+|++..+.|.... ...+-.+-+.+...|++++|..++++..... |+ ......+-.++...|+.+
T Consensus 15 G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~~gr~~ 92 (120)
T PF12688_consen 15 GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYNLGRPK 92 (120)
T ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHHCCCHH
Confidence 889999999999999887544 3466667788899999999999999987652 43 222223345678889999
Q ss_pred HHHHHHHHHHHCCCCcCHhhHHHHHHHHHh
Q 039342 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105 (248)
Q Consensus 76 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 105 (248)
+|.+.+-.... ++..-|.--|..|+.
T Consensus 93 eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 93 EALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 99998866553 344466666666653
No 178
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.73 E-value=0.38 Score=42.55 Aligned_cols=187 Identities=11% Similarity=0.127 Sum_probs=128.8
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|+.++|..+++.....+.. |..|...+-..|...++.++|..+|++.... .|+..-...+..+|.|.+.+.+-.++-
T Consensus 57 gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa 133 (932)
T KOG2053|consen 57 GKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAA 133 (932)
T ss_pred cCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999888888766554 8899999999999999999999999998654 688888888999999999888777666
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcC----------CHHHHHHHHHHHHHCCCC--chHHhHHHHhcccccccchHHHHH
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSN----------RWDDAYGLLDEMHTNRIS--NIHQVTGQMIKGEFDDESNWQMVE 149 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~----------~~~~a~~~~~~m~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 149 (248)
=+|-+. ++-+...|=++++.....- -+.-|.+.++.+.+.+-+ ......-.+.. ....+.+++|.
T Consensus 134 ~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i--L~~~~k~~eal 210 (932)
T KOG2053|consen 134 LQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI--LELQGKYQEAL 210 (932)
T ss_pred HHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH--HHhcccHHHHH
Confidence 555543 2224444445555444321 133466777777665511 11111111111 34566789999
Q ss_pred HHH-HHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCC
Q 039342 150 YVF-DKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194 (248)
Q Consensus 150 ~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 194 (248)
.++ ....+.-...+...-+--+..+...++|++..++-.++..+|
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 888 444444444455666677788888999999998888888765
No 179
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.71 E-value=0.018 Score=34.05 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC-CHHHHHHHHHHH
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN-RWDDAYGLLDEM 119 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m 119 (248)
.+|..+-..+.+.|++++|...|++..+.. +-+...|..+-.+|.+.| ++++|++.+++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344444445555555555555555544432 113344444444555554 355555555443
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.64 E-value=0.19 Score=38.13 Aligned_cols=165 Identities=11% Similarity=-0.005 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH-hhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHh
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV-MCY---CMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 135 (248)
.|. ....+.+.|++++|.+.|+.+...- |+. ... -.+..++.+.++.++|...+++..+..-.-...-+...+
T Consensus 35 ~Y~-~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 35 IYA-TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHH-HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 444 4455567899999999999998752 332 222 345677889999999999999997654221111221222
Q ss_pred cccc-------------------cccchHHHHHHHHHHHHhcC----CCCCHHHHH------------HHHHHHHhcCch
Q 039342 136 KGEF-------------------DDESNWQMVEYVFDKLNCEG----YGLGMRFYN------------ALLEALWCLGLR 180 (248)
Q Consensus 136 ~~~~-------------------~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~------------~li~~~~~~g~~ 180 (248)
.+.+ ........|...|+.+.+.= ..|+....- .+.+-|.+.|.+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 2211 01112344555666655541 122222211 233457888999
Q ss_pred HHHHHHHHHHHHCCCCCCcc-hhhhHHhhhhhhccccchHHHHHHHHHHHHH
Q 039342 181 ERAARVLDEATKRGLFPELF-RHNKLVWSVDVHRMWEGGAYTAISVWLNKMY 231 (248)
Q Consensus 181 ~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~ 231 (248)
..|..-++.+.+. -|+.. +...|. .+..+|...|..+++..+...+.
T Consensus 192 ~AA~~r~~~v~~~--Yp~t~~~~eal~--~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 192 VAVVNRVEQMLRD--YPDTQATRDALP--LMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHH--CCCCchHHHHHH--HHHHHHHHcCChHHHHHHHHHHh
Confidence 9899888888864 33322 222222 23377888888888777666553
No 181
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.63 E-value=0.018 Score=34.04 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=52.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG-LVDESKEQFQEIKS 86 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~ 86 (248)
++..|..+-..+.+.|++++|+..|++..+.+ +-+...|..+-.+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46778888888999999999999999987764 346677888888888888 69999999888765
No 182
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.29 Score=39.63 Aligned_cols=135 Identities=16% Similarity=0.081 Sum_probs=92.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHH-hcccccccc
Q 039342 66 SVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM-IKGEFDDES 143 (248)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~-l~~~~~~~~ 143 (248)
..+...++++.|.-.|+..+.. .| +..+|.-|+.+|...|++.+|..+-+.-... ...+..+...+ -..++....
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCch
Confidence 3566788999999999887654 44 6789999999999999999987766543321 11122222222 112233444
Q ss_pred hHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHh
Q 039342 144 NWQMVEYVFDKLNCEGYGLG-MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW 207 (248)
Q Consensus 144 ~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 207 (248)
.-++|..+++.-.. +.|+ ....+.+...+...|..+++..+++.-... .||...++.|-.
T Consensus 419 ~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd 479 (564)
T KOG1174|consen 419 MREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGD 479 (564)
T ss_pred hHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHH
Confidence 45888888876544 3343 455667777888899999999999986653 788888777763
No 183
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.58 E-value=0.24 Score=38.46 Aligned_cols=224 Identities=13% Similarity=0.140 Sum_probs=127.3
Q ss_pred CchHHHHHHHHHHHHcC--CCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCCH-----HH
Q 039342 2 GLYKECQAILSRMSESG--VARNS------DSFNAVIEAFRQGGRFEEAIKAYVEMEKV--------RCDPNE-----RT 60 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g--~~~~~------~~y~~li~~~~~~~~~~~a~~~~~~m~~~--------~~~p~~-----~t 60 (248)
||.+.|..++.+.+..- ..|+. ..||.-...+.+..+++.|...+++..+- ...|+. .+
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~i 86 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSI 86 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHH
Confidence 89999999999987543 23332 35666666666664777776666554221 233333 56
Q ss_pred HHHHHHHHHhcCChh---HHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--hHHhHHHHh
Q 039342 61 LEAVLSVYCFAGLVD---ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN--IHQVTGQMI 135 (248)
Q Consensus 61 ~~~ll~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~~l 135 (248)
+..++.+|...+..+ +|.++++.+.... .-.+.++-.=+..+.+.++.+.+.+++.+|...-..+ +-..+-..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 677888888877655 4555666664332 1125566667777777899999999999998764312 222222222
Q ss_pred cccccccchHHHHHHHHHHHHhcCCCCCHH-HHH-HHHHH-HHhcC--------chHHHHHHHHHHHH-CCCCCC---cc
Q 039342 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMR-FYN-ALLEA-LWCLG--------LRERAARVLDEATK-RGLFPE---LF 200 (248)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~-~li~~-~~~~g--------~~~~a~~~~~~m~~-~g~~p~---~~ 200 (248)
....... ...+...+..+....+.|... ... .++.- +...+ ..+...++++...+ .+.+.+ ..
T Consensus 166 ~~l~~~~--~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 166 KQLAEKS--PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHhhC--cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 2212222 245555565555554555543 111 12221 11111 14455555654333 222222 23
Q ss_pred hhhhHHhhhhhhccccchHHHHHHHHHHH
Q 039342 201 RHNKLVWSVDVHRMWEGGAYTAISVWLNK 229 (248)
Q Consensus 201 t~~~li~~~~~~~~~~~g~~~~~~~~~~~ 229 (248)
+..+++|+... ...+.++++.|..+++-
T Consensus 244 a~~~LLW~~~~-~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 244 AIHTLLWNKGK-KHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHH-HHHhhcCHHHHHHHHHH
Confidence 45677888764 45677899999998874
No 184
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.52 E-value=0.58 Score=42.14 Aligned_cols=163 Identities=14% Similarity=0.126 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcc-
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG- 137 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~- 137 (248)
..|..|-..|+...+...|.+.|+...+-. ..+........+.|++..+++.|..+.-.--+.. +.....++..-++
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 466777777777778888888888877643 2266788999999999999999999933322221 1122223322232
Q ss_pred cccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccc
Q 039342 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEG 217 (248)
Q Consensus 138 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 217 (248)
++-..++...+..-|+.-....+. |...|..+.++|.+.|++..|.++|.+... +.|+ .+|.....+.+ .+..
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~-s~y~~fk~A~~---ecd~ 643 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL-SKYGRFKEAVM---ECDN 643 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH-hHHHHHHHHHH---HHHh
Confidence 355667778888777776665544 778899999999999999999999987654 3554 33333333322 2345
Q ss_pred hHHHHHHHHHHHH
Q 039342 218 GAYTAISVWLNKM 230 (248)
Q Consensus 218 g~~~~~~~~~~~m 230 (248)
|.+.++...+...
T Consensus 644 GkYkeald~l~~i 656 (1238)
T KOG1127|consen 644 GKYKEALDALGLI 656 (1238)
T ss_pred hhHHHHHHHHHHH
Confidence 5665555555444
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.49 E-value=0.28 Score=38.19 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=52.8
Q ss_pred cccc-chHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchh---hhHHhh
Q 039342 139 FDDE-SNWQMVEYVFDKLNCE----GYGLG--MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH---NKLVWS 208 (248)
Q Consensus 139 ~~~~-~~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~---~~li~~ 208 (248)
+... ++++.|.+.|+...+. + .+. ..++..+...+.+.|++++|.++|++........+..-| ..++.+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 5566 7888998888775543 3 222 445677788899999999999999998875443322111 122222
Q ss_pred hhhhccccchHHHHHHHHHHHHH
Q 039342 209 VDVHRMWEGGAYTAISVWLNKMY 231 (248)
Q Consensus 209 ~~~~~~~~~g~~~~~~~~~~~m~ 231 (248)
.+ .+...|+...|.+.+++..
T Consensus 203 ~l--~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 203 IL--CHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HH--HHHHTT-HHHHHHHHHHHG
T ss_pred HH--HHHHcCCHHHHHHHHHHHH
Confidence 22 2233466666766666654
No 186
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.49 E-value=0.33 Score=38.89 Aligned_cols=203 Identities=12% Similarity=0.025 Sum_probs=108.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCC-cCHhhHHHHHHHHH
Q 039342 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS---GIL-PSVMCYCMLLAVYA 104 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~-p~~~~~~~li~~~~ 104 (248)
...+..+.|+|+...+........ .++...|.++... +.++.+++....+...+. .+. .....|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356777888888855555554422 2355555555554 778888888887777643 111 12334444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CchH----HhHHHHhcccccccchHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhc
Q 039342 105 KSNRWDDAYGLLDEMHTNRI-SNIH----QVTGQMIKGEFDDESNWQMVEYVFDKLNC--EGYGLGMRFYNALLEALWCL 177 (248)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~li~~~~~~ 177 (248)
+...+.+..++.+-...... .... ..|..-+......-..|+....+-..+.. ........++..+.+.+.+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~ 159 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKA 159 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHC
Confidence 44444444444433311110 1111 12222222212222334444443333333 12334567788899999999
Q ss_pred CchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcC
Q 039342 178 GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMG 237 (248)
Q Consensus 178 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~ 237 (248)
|+++.|...+..+.+.+..+........+... +-.+..|+..+|...+++..+.....
T Consensus 160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~a--kllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYA--KLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred CCcHHHHHHHHHHhccCCcccCCCcchHHHHH--HHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999988754222211111111111 44567788888888888888744443
No 187
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.45 E-value=0.035 Score=33.12 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=25.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 039342 32 AFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86 (248)
Q Consensus 32 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 86 (248)
.|.+.++++.|.++++.+.+.+ +.+...+...-.++.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555555555555554432 22334444444455555555555555555443
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.42 E-value=0.035 Score=33.14 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=47.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
..|.+.+++++|.++++.+.+.+ +.+...+...-..+.+.|++++|...|++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 56788999999999999998763 2266778888888999999999999999988665
No 189
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.33 E-value=0.64 Score=40.51 Aligned_cols=102 Identities=12% Similarity=0.105 Sum_probs=62.3
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH-hh
Q 039342 17 SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV-MC 95 (248)
Q Consensus 17 ~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~ 95 (248)
..+.-+...|..+--+....|+++.+-+.|++....- .-....|+.+-..|...|.-..|..+++.-....-.|+. ..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3445577888888888888888888888888765332 234566777777777888888888887765543223433 33
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHH
Q 039342 96 YCMLLAVYAK-SNRWDDAYGLLDEM 119 (248)
Q Consensus 96 ~~~li~~~~~-~~~~~~a~~~~~~m 119 (248)
+-..-..|.+ -+..++++.+-.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~ka 420 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKA 420 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHH
Confidence 3333333332 23445544444443
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.32 E-value=0.27 Score=36.19 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=38.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 039342 29 VIEAFRQGGRFEEAIKAYVEMEKVR--CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 87 (248)
.-..+...|++.+|.+.|+.+...- -+--....-.+..++.+.|+++.|...++++.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445567788888888888886541 1222344455677888888888888888887654
No 191
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.31 E-value=0.019 Score=34.93 Aligned_cols=61 Identities=25% Similarity=0.485 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKV--RCD---PN-ERTLEAVLSVYCFAGLVDESKEQFQEI 84 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~--~~~---p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m 84 (248)
.+|+.+-..|...|++++|+..|++..+. ... |+ ..+++.+-.+|...|++++|.+.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555555555555554321 011 11 234444445555555555555555443
No 192
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.30 E-value=0.022 Score=34.63 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSS----GI-LPS-VMCYCMLLAVYAKSNRWDDAYGLLDEMH 120 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 120 (248)
.+|+.+-..|.+.|++++|.+.|++..+. |- .|. ..+++.+-..|...|++++|++.+++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57888889999999999999999887643 21 132 5678888889999999999999988754
No 193
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.28 E-value=0.24 Score=35.09 Aligned_cols=138 Identities=12% Similarity=0.118 Sum_probs=80.0
Q ss_pred HHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccc-cccchHHHHHHHHHHHH
Q 039342 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF-DDESNWQMVEYVFDKLN 156 (248)
Q Consensus 78 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~ 156 (248)
.+..+.+.+.++.|+...|..+|+.+.+.|++.. +.++...++-+|+......+...- ....-.+.+.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455566667778888888888888888877544 444555566666666655544311 11222344444444443
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHc
Q 039342 157 CEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMM 236 (248)
Q Consensus 157 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~ 236 (248)
. .+..+++.+...|++-+|..+.+......-.| ...++ .+-.+.++...-..+++-+.+++..
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~----~~~fL-----eAA~~~~D~~lf~~V~~ff~~~n~~ 152 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQYHKVDSVP----ARKFL-----EAAANSNDDQLFYAVFRFFEERNLR 152 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCC----HHHHH-----HHHHHcCCHHHHHHHHHHHHHhhHh
Confidence 2 26777888888888888888887643221111 13444 3334455555555566666665543
No 194
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.26 E-value=0.055 Score=42.80 Aligned_cols=86 Identities=17% Similarity=0.105 Sum_probs=72.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
-.+.+..|.-+...|+...|.++-.+.+ .||..-|-..|.+++..++|++-.++... . -++.-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence 3467777888899999999988877774 49999999999999999999987765432 1 256899999999
Q ss_pred HHhcCCHHHHHHHHHH
Q 039342 103 YAKSNRWDDAYGLLDE 118 (248)
Q Consensus 103 ~~~~~~~~~a~~~~~~ 118 (248)
|.+.|+..+|..++..
T Consensus 247 ~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHCCCHHHHHHHHHh
Confidence 9999999999999987
No 195
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.21 E-value=0.12 Score=39.82 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=78.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHH
Q 039342 33 FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDD 111 (248)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~ 111 (248)
+.+.+++++|+..|.+..+.. +-|.+-|..=-.+|.+.|.++.|.+=.+.-... .| ...+|..|=.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 456778888888888887653 345666777788999999999998877766654 34 46789999999999999999
Q ss_pred HHHHHHHHHHCCCCchHHhHHHHhcc
Q 039342 112 AYGLLDEMHTNRISNIHQVTGQMIKG 137 (248)
Q Consensus 112 a~~~~~~m~~~~~~~~~~~~~~~l~~ 137 (248)
|++.|++-.+ +.|+..+|..-+..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 9999998764 45888888776654
No 196
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.14 E-value=0.37 Score=42.54 Aligned_cols=136 Identities=13% Similarity=0.109 Sum_probs=81.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHH
Q 039342 33 FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112 (248)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 112 (248)
....|..++|+.+|++.++ |..|=+.|-..|+|++|.++-+.=-+.. -..||-.-...+-..++++.|
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHH
Confidence 3466888888888888775 3445566777888998888765422221 234566666666667788888
Q ss_pred HHHHHHH----------HHCCCC--------chHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039342 113 YGLLDEM----------HTNRIS--------NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174 (248)
Q Consensus 113 ~~~~~~m----------~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 174 (248)
++.|++- .....+ ....+...-...+....|..+.|..+|...++ |-++++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 8887642 111100 00011111112234456777777777765443 55666666
Q ss_pred HhcCchHHHHHHHHH
Q 039342 175 WCLGLRERAARVLDE 189 (248)
Q Consensus 175 ~~~g~~~~a~~~~~~ 189 (248)
|-+|+.++|..+-++
T Consensus 949 C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEE 963 (1416)
T ss_pred eeccCchHHHHHHHh
Confidence 777777777776655
No 197
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.05 E-value=0.67 Score=38.99 Aligned_cols=154 Identities=18% Similarity=0.110 Sum_probs=102.8
Q ss_pred CCchHHHHHHHHHHHHc-CCCCC-----HHhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHH
Q 039342 1 GGLYKECQAILSRMSES-GVARN-----SDSFNAVIEAFRQG----GRFEEAIKAYVEMEKVRCDPNERTLEAV-LSVYC 69 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~-g~~~~-----~~~y~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~t~~~l-l~~~~ 69 (248)
.||-+.+++.+.+-.+. ++.-. .-.|+.++..++.. .+.+.|.++++.+.+. -|+...|... -+.+.
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLER 278 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 36778888888776543 33221 23577777666654 5678899999999865 6887777544 35667
Q ss_pred hcCChhHHHHHHHHHHHC--CC-CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchH-
Q 039342 70 FAGLVDESKEQFQEIKSS--GI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW- 145 (248)
Q Consensus 70 ~~g~~~~a~~~~~~m~~~--~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~- 145 (248)
..|++++|.+.|+..... .. +.....+--+...+.-..+|++|...|.++.+..- -...+|..+..+++...++.
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~ 357 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREE 357 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccch
Confidence 789999999999975431 11 12344555666677888999999999999987542 23455555555555555555
Q ss_pred ------HHHHHHHHHHHh
Q 039342 146 ------QMVEYVFDKLNC 157 (248)
Q Consensus 146 ------~~a~~~~~~m~~ 157 (248)
++|..++.+...
T Consensus 358 ~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 358 EAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 677777766543
No 198
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.00 E-value=0.96 Score=39.50 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=63.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 039342 47 VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126 (248)
Q Consensus 47 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 126 (248)
.++....+..|...|..+--+..+.|+++.+.+.|++.... ..-....|..+-..|...|.-..|..++++-....-.|
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 33344456788999999999999999999999999997754 23357789999999999999999999998876554334
Q ss_pred h
Q 039342 127 I 127 (248)
Q Consensus 127 ~ 127 (248)
+
T Consensus 391 s 391 (799)
T KOG4162|consen 391 S 391 (799)
T ss_pred C
Confidence 3
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.98 E-value=0.22 Score=38.29 Aligned_cols=86 Identities=8% Similarity=0.023 Sum_probs=65.6
Q ss_pred CchHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHH
Q 039342 2 GLYKECQAILSRMSESGVAR--NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR--CDPNERTLEAVLSVYCFAGLVDES 77 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~--~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a 77 (248)
|++++|...|+.+.+.-... ....+--+-..|...|++++|...|+.+.+.- -+.....+-.+...+...|+.++|
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A 236 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA 236 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence 78999999999988643211 13567778888999999999999999997542 112234455566678899999999
Q ss_pred HHHHHHHHHC
Q 039342 78 KEQFQEIKSS 87 (248)
Q Consensus 78 ~~~~~~m~~~ 87 (248)
..+|+.+.+.
T Consensus 237 ~~~~~~vi~~ 246 (263)
T PRK10803 237 KAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 200
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.96 E-value=0.42 Score=43.00 Aligned_cols=86 Identities=14% Similarity=0.075 Sum_probs=53.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHH
Q 039342 68 YCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146 (248)
Q Consensus 68 ~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (248)
|.+.++...+..-|+...+. .| |...|..+..+|.++|+...|.++|.+...-+ |...--.......-...|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHH
Confidence 33444455554444444332 34 67789999999999999999999998776543 443322222222234566677
Q ss_pred HHHHHHHHHHh
Q 039342 147 MVEYVFDKLNC 157 (248)
Q Consensus 147 ~a~~~~~~m~~ 157 (248)
.+...+.....
T Consensus 648 eald~l~~ii~ 658 (1238)
T KOG1127|consen 648 EALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHH
Confidence 77777666543
No 201
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.88 E-value=0.13 Score=39.51 Aligned_cols=95 Identities=19% Similarity=0.252 Sum_probs=75.0
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN-ERTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~ 79 (248)
.+++++|+..|.+..+... .|+.-|..=-.+|++.|.++.|.+-.+...+- .|. ..+|..|-.+|...|++++|.+
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred hhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3689999999999987432 36777777788999999999998877766543 343 4788999999999999999999
Q ss_pred HHHHHHHCCCCcCHhhHHHHH
Q 039342 80 QFQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 80 ~~~~m~~~~~~p~~~~~~~li 100 (248)
.|+...+ +.|+-.+|-.=+
T Consensus 171 aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHhhhc--cCCCcHHHHHHH
Confidence 9988776 578777665433
No 202
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.85 E-value=0.35 Score=39.71 Aligned_cols=65 Identities=8% Similarity=0.132 Sum_probs=56.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE----RTLEAVLSVYCFAGLVDESKEQFQEIKSS 87 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 87 (248)
.+...|+.+-.+|.+.|++++|+..|++..+. .|+. .+|..+-.+|.+.|+.++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35778999999999999999999999997765 4664 46899999999999999999999998874
No 203
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.79 E-value=0.34 Score=39.72 Aligned_cols=131 Identities=11% Similarity=0.103 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhc
Q 039342 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSG-ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136 (248)
Q Consensus 58 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~ 136 (248)
+..|...|++-.+..-++.|..+|-+.++.| +.+++..++++|..++. |+...|.++|+--... -|+...|..-..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567778888888888999999999999888 66789999999998875 6778888888754332 144444432222
Q ss_pred ccccccchHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 137 GEFDDESNWQMVEYVFDKLNCEGYGL--GMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
.+...-++-+.|..+|+.-.+. +.- -...|..+|+.-..-|++..+..+-+.|..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 2233445557778888743322 111 145788888888888988777776666643
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.77 E-value=0.75 Score=36.49 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcc
Q 039342 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137 (248)
Q Consensus 58 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~ 137 (248)
..+.+..|.-+...|+...|.++-++++ .|+..-|-..|.+++..++|++-..+-.. .-+| .-|..++..
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsP--IGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KKSP--IGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCC--CChHHHHHH
Confidence 4466777888889999998888876664 47899999999999999999998876543 1122 334444444
Q ss_pred cccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 039342 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190 (248)
Q Consensus 138 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 190 (248)
|...|+...|..+... + .+..-+..|.+.|++.+|.+.-.+.
T Consensus 247 -~~~~~~~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 -CLKYGNKKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred -HHHCCCHHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 3345566777777665 2 2466788899999999988775443
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.60 E-value=0.62 Score=34.30 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSESGV--ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEK 51 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~--~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~ 51 (248)
|++++|.+.|+.+...-. +-.....-.+..++-+.|+++.|...++++.+
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666666554321 11123344445555566666666666665544
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.78 Score=35.00 Aligned_cols=135 Identities=8% Similarity=0.034 Sum_probs=94.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHH----
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL---- 100 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li---- 100 (248)
.-++++....-.+.+.-...++++..+..-+.++...+.+.+.-.+.|+.+.|...|++..+..-..|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4566777777788888899999999888777888888999999999999999999999887654344544554444
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHCCCCchHHhH-HHHhcccccccchHHHHHHHHHHHHhcCCCC
Q 039342 101 -AVYAKSNRWDDAYGLLDEMHTNRISNIHQVT-GQMIKGEFDDESNWQMVEYVFDKLNCEGYGL 162 (248)
Q Consensus 101 -~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 162 (248)
..|.-++++-.|...+.+....+-......- .+++ .--.|+...|.+..+.|.+.-..|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc---llYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC---LLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHH---HHHHHHHHHHHHHHHHHhccCCcc
Confidence 3455677888899999887655422111111 1222 223456778888888888764443
No 207
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.51 E-value=0.32 Score=37.52 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCchHHhHHH
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRISNIHQVTGQ 133 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~ 133 (248)
.++..++..+...|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 467778888888888888888888887653 23677888888888888888888888887744 567776665544
Q ss_pred Hhc
Q 039342 134 MIK 136 (248)
Q Consensus 134 ~l~ 136 (248)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.47 E-value=0.24 Score=42.80 Aligned_cols=72 Identities=10% Similarity=0.119 Sum_probs=33.7
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
|++++|++++-+|.++.. .|..+.+.|||-.+.++++.=-.. .=..-...|+.+-..++....|++|.+.
T Consensus 748 g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777766655332 244455556665555554331000 0001123444444445544455555544
Q ss_pred HH
Q 039342 81 FQ 82 (248)
Q Consensus 81 ~~ 82 (248)
+.
T Consensus 819 Y~ 820 (1189)
T KOG2041|consen 819 YS 820 (1189)
T ss_pred HH
Confidence 43
No 209
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.15 Score=39.65 Aligned_cols=103 Identities=13% Similarity=0.206 Sum_probs=74.3
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHh
Q 039342 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV---RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM 94 (248)
Q Consensus 18 g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 94 (248)
|...+..+-..++..-....+++.+...+-+++.. ...|+...| ++++.|.+ =+.+++..++..-.+.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 44455666667777777778888888888887654 233443322 23333333 35678888888888899999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
+++.+|+.+.+.++..+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999988887776543
No 210
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.95 Score=39.46 Aligned_cols=111 Identities=11% Similarity=0.034 Sum_probs=72.0
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHH
Q 039342 90 LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNA 169 (248)
Q Consensus 90 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 169 (248)
.-..-+.+--+.-++.-|+-.+|.++-.+.+ .|+-..|+.-+.+ +...++|++.+++-+.++. +.=|.-
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~a-La~~~kweeLekfAkskks------PIGy~P 749 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTA-LADIKKWEELEKFAKSKKS------PIGYLP 749 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHH-HHhhhhHHHHHHHHhccCC------CCCchh
Confidence 3344455555666667777777777766543 3666666666666 7777888888877666553 223555
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHH
Q 039342 170 LLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225 (248)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~ 225 (248)
++.+|.+.|+.++|.+++-+.... .-.. ..|.+.|++.+|.+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~l---------~ekv-----~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGGL---------QEKV-----KAYLRVGDVKEAAD 791 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCCh---------HHHH-----HHHHHhccHHHHHH
Confidence 889999999999999998764321 1233 45556666655544
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=95.29 E-value=0.25 Score=34.76 Aligned_cols=91 Identities=9% Similarity=-0.046 Sum_probs=62.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCH
Q 039342 30 IEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRW 109 (248)
Q Consensus 30 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 109 (248)
-..+-..|++++|..+|.-+...+. -|..-|..|-.+|-..+++++|...|...-..+. -|+..+--.-.+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 3445578888888888888866543 3444455666666677888888888877654432 2344444556677788888
Q ss_pred HHHHHHHHHHHHC
Q 039342 110 DDAYGLLDEMHTN 122 (248)
Q Consensus 110 ~~a~~~~~~m~~~ 122 (248)
+.|...|....+.
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888887764
No 212
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.22 E-value=1.2 Score=35.35 Aligned_cols=188 Identities=11% Similarity=0.074 Sum_probs=121.6
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChhHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVI---EAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA-VLSVYCFAGLVDES 77 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~g~~~~a 77 (248)
|++..|+.-|....+ -|+..|-++. ..|...|+...|+.=+....+ ++||-..-.+ --..+.+.|.++.|
T Consensus 52 ~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A 125 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQA 125 (504)
T ss_pred hhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHH
Confidence 455566666665554 4445555443 345566666666665655544 3566322111 12356789999999
Q ss_pred HHHHHHHHHCCCC------------cCHhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccc
Q 039342 78 KEQFQEIKSSGIL------------PSVMC--YCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES 143 (248)
Q Consensus 78 ~~~~~~m~~~~~~------------p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~ 143 (248)
..=|+.+.+.... +.... ....+..+.-.|+...|+.....+.+. .|+...+..+-..++...|
T Consensus 126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcC
Confidence 9999998875321 11222 223455667788999999999988864 5888888887777788888
Q ss_pred hHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcc
Q 039342 144 NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200 (248)
Q Consensus 144 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 200 (248)
.+..|..=++...+..-. ++.++--+-..+-..|+.+.++...++..+. .||-.
T Consensus 204 e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK 257 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHK 257 (504)
T ss_pred cHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchh
Confidence 888888766665554333 4455555666777888888888888887753 56543
No 213
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.10 E-value=0.64 Score=31.46 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 125 (248)
.....+......|+-|.-.+++..+.+. -.|++...-.+-.+|.+-|+..++.+++.+.-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3455566666666666666666666542 2455556666666666666666666666666666543
No 214
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.02 E-value=0.79 Score=34.94 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=74.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCc-CHhhHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVR----CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS-GILP-SVMCYCM 98 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p-~~~~~~~ 98 (248)
.|+.-+..+ +.|++..|...|....+.. +.||..- .|-.++...|++++|..+|..+.+. +-.| -+..+--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y--WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYY--WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHH--HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 588777765 5667999999999997752 4455544 4999999999999999999998754 2223 2356777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 99 LLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
|-....+.|+.++|..+|++..+.-
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 7778889999999999999987663
No 215
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.98 E-value=0.73 Score=31.51 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=78.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 103 (248)
.....++..+.+.+.+.....+++.+...+ ..+...++.++..|++.+. .+..+.++. .++......+++.|
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHH
Confidence 344567788888888888888888887776 3677788888888887643 333333331 13445555677888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039342 104 AKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175 (248)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 175 (248)
.+.+.++++.-++.++.. .......++. ..++.+.|.+.+.+ ..+...|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~----~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN-----FKDAIVTLIE----HLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC-----HHHHHHHHHH----cccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 888888888888776521 1222222222 22445666655553 114455665555544
No 216
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.95 E-value=0.75 Score=31.47 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccc
Q 039342 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141 (248)
Q Consensus 62 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~ 141 (248)
..++..+...+.......+++.+...+. .+...++.++..|++.+ ..+.+..++. . ++......++.- |.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~-c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKL-CEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHH-HHH
Confidence 4567777777788888888888876653 56778888888888764 3444444442 1 111222223333 566
Q ss_pred cchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CchHHHHHHHHH
Q 039342 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL-GLRERAARVLDE 189 (248)
Q Consensus 142 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~ 189 (248)
.+.++.+..++..+.. |...++.+... ++.+.|.++..+
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 6677777777776533 33344444444 777777777765
No 217
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.91 E-value=0.28 Score=31.35 Aligned_cols=62 Identities=15% Similarity=0.021 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 39 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
.-+..+-++.+....+.|++.+..+.+++|.|.+++..|.++|+-.+.+ +.+....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 3355566666777788888888888888888888888888888888743 1122236666654
No 218
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.91 E-value=0.34 Score=30.65 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 38 RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 38 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
|.-++.+-++.+....+.|++....+.+++|.|.+++..|.++|+-.+.+ +..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44456666677777777888888888888888888888888888877633 1123445655544
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.88 E-value=1.9 Score=36.38 Aligned_cols=160 Identities=14% Similarity=0.138 Sum_probs=93.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CCCC-----CHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCcCHhhHH
Q 039342 28 AVIEAFRQGGRFEEAIKAYVEMEKV-RCDP-----NERTLEAVLSVYCF----AGLVDESKEQFQEIKSSGILPSVMCYC 97 (248)
Q Consensus 28 ~li~~~~~~~~~~~a~~~~~~m~~~-~~~p-----~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 97 (248)
.++....=.||-+.+++.+.+-.+. ++.- -.-+|+.++..++. ....+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3444455568888888888776443 2322 12334444444433 45678888889888875 57766665
Q ss_pred HHH-HHHHhcCCHHHHHHHHHHHHHCC--CC-chHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHH-
Q 039342 98 MLL-AVYAKSNRWDDAYGLLDEMHTNR--IS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE- 172 (248)
Q Consensus 98 ~li-~~~~~~~~~~~a~~~~~~m~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~- 172 (248)
..- +.+...|++++|++.|++..... .+ .....+..+... +....+|+.|...|..+.+.. ..+..+|.-+.-
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~-~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWC-HMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHH-HHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 433 33456788999999998754311 11 112222222222 555678899999998888752 223444443333
Q ss_pred HHHhcCch-------HHHHHHHHHHH
Q 039342 173 ALWCLGLR-------ERAARVLDEAT 191 (248)
Q Consensus 173 ~~~~~g~~-------~~a~~~~~~m~ 191 (248)
++...|+. ++|.++|.+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 23445666 77888887654
No 220
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.24 Score=38.54 Aligned_cols=102 Identities=16% Similarity=0.044 Sum_probs=71.7
Q ss_pred CCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---Cc--hHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 87 SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI---SN--IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 87 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
.|...+..+....+..-....+++.++..+-+++...- .| +..++-.++.. -+++.+..++..=.+.|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-----y~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-----YDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-----cChHHHHHHHhCcchhccc
Confidence 35555677777777777777788888888888765421 11 12222222222 2346777777777788999
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 162 LGMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 162 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
||..+++.+|+.+.+.+++.+|..+...|..+
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999998888776644
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.70 E-value=0.37 Score=39.59 Aligned_cols=66 Identities=14% Similarity=0.026 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 55 DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV----MCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 55 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
+.+...++.+-.+|.+.|++++|...|++..+. .|+. .+|..+-.+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346688999999999999999999999998875 4653 46999999999999999999999998875
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=1.6 Score=33.84 Aligned_cols=101 Identities=10% Similarity=0.168 Sum_probs=65.9
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCcCHhhHH
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA---GLVDESKEQFQEIKSSGILPSVMCYC 97 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~ 97 (248)
-|...|-.|-..|...|+...|..-|....+.. .+|...+..+-.++... .+..++..+|++..... .-++.+-.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 367778888888888888888887777765432 34444555444444332 24667777777776643 12556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 98 MLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
.|-..+...|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 66677777788888888888777654
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=94.32 E-value=0.42 Score=33.60 Aligned_cols=86 Identities=7% Similarity=-0.087 Sum_probs=55.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHH
Q 039342 104 AKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183 (248)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 183 (248)
-..|++++|..+|.-+...+ |...-|..-+.+++...+.++.|...|...-..+. -|...+-..-.++...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 35677777777777765543 44444555555556667777777777766544432 1333355566778888888888
Q ss_pred HHHHHHHHH
Q 039342 184 ARVLDEATK 192 (248)
Q Consensus 184 ~~~~~~m~~ 192 (248)
...|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888877665
No 224
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=94.31 E-value=1.1 Score=30.81 Aligned_cols=82 Identities=10% Similarity=0.092 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C--CCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCcCHhhHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVR---C--DPNERTLEAVLSVYCFAGL-VDESKEQFQEIKSSGILPSVMCYCM 98 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~---~--~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ 98 (248)
..|+++...+..+.......+++.+..-. + ..+..+|++++.+.++..- ---+..+|+.|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34555555555555555555555542110 0 1233445555555544333 2333445555555555555555555
Q ss_pred HHHHHHhc
Q 039342 99 LLAVYAKS 106 (248)
Q Consensus 99 li~~~~~~ 106 (248)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 55555443
No 225
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.24 E-value=1.1 Score=32.13 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=34.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE--RTLEAVLSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~ 85 (248)
..+..+...|++.|+.+.|++.|.++.+....|.. ..+-.+|..+.-.+++..+....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35555666666666666666666666554333322 333445555556666666665555554
No 226
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.24 E-value=0.88 Score=35.17 Aligned_cols=79 Identities=9% Similarity=0.025 Sum_probs=59.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHh-----cCCCCCHHHH
Q 039342 93 VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC-----EGYGLGMRFY 167 (248)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 167 (248)
..++..++..+...|+.+.+.+.++++.... +-+...+..++.+ +...|+...+...|+.+.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~-y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEA-YLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHH-HHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 4477888888888889999999888887664 2345566666666 6667777888888777654 4888888887
Q ss_pred HHHHHH
Q 039342 168 NALLEA 173 (248)
Q Consensus 168 ~~li~~ 173 (248)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 777766
No 227
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.17 E-value=2.4 Score=35.42 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=87.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
..-.+.+++.+-+.|..+.|+++... . ..-.....+.|+++.|.++-++. ++...|..|-+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 45578888888888888888877433 2 22345566778888887765443 367799999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHH
Q 039342 103 YAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182 (248)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 182 (248)
..+.|+++-|++.|.+..+ +..++.- +...|+.+...++.+.....|- +|....++.-.|+.++
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lL-y~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLL-YSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEE 420 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHH-HHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHH-HHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHH
Confidence 9999999999999986532 1222111 3344555677777666655542 6777777788888888
Q ss_pred HHHHHHH
Q 039342 183 AARVLDE 189 (248)
Q Consensus 183 a~~~~~~ 189 (248)
..+++.+
T Consensus 421 cv~lL~~ 427 (443)
T PF04053_consen 421 CVDLLIE 427 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888765
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.13 E-value=1.1 Score=30.83 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=58.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC
Q 039342 31 EAFRQGGRFEEAIKAYVEMEKVR--CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108 (248)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 108 (248)
....+.|++++|.+.|+.+...= -+-....--.++.+|.+.+++++|...++++.+....--..-|-..+.+++.-..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 34456788888888888886651 1223345556788888888888888888888775322223445555555443221
Q ss_pred -----------------HHHHHHHHHHHHHC
Q 039342 109 -----------------WDDAYGLLDEMHTN 122 (248)
Q Consensus 109 -----------------~~~a~~~~~~m~~~ 122 (248)
...|..-|+++.+.
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 55677777777654
No 229
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.10 E-value=0.75 Score=38.29 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCH
Q 039342 30 IEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRW 109 (248)
Q Consensus 30 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 109 (248)
.....+.|+.+.|.++.++ ..+...|..|-....+.|+++-|++.|.+.. -|..|+-.|.-.|+.
T Consensus 325 FeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDR 389 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-H
T ss_pred hHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCH
Confidence 3445566666666655443 2355667777777777777777776665533 345555566666666
Q ss_pred HHHHHHHHHHHHCC
Q 039342 110 DDAYGLLDEMHTNR 123 (248)
Q Consensus 110 ~~a~~~~~~m~~~~ 123 (248)
+...++.+.....|
T Consensus 390 ~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 390 EKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcc
Confidence 66666665555554
No 230
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.06 E-value=1.3 Score=31.89 Aligned_cols=62 Identities=15% Similarity=0.281 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC--HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPS--VMCYCMLLAVYAKSNRWDDAYGLLDEMH 120 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~ 120 (248)
..+..+...|++.|+.+.|.+.|.++.+....|. ...+-.+|....-.+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455566666666666666666666665533332 2345555666666666666665555543
No 231
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.94 E-value=2.6 Score=33.57 Aligned_cols=187 Identities=11% Similarity=0.050 Sum_probs=119.6
Q ss_pred CchHHHHHHHHHHHHcCCCC--CH----------Hh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVAR--NS----------DS--FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~--~~----------~~--y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 67 (248)
|.+++|..=|+...+....- +. .. ....+..+...||...|.+....+.+-. +.|...|..--.+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHH
Confidence 78899999999887654211 11 11 2234556777899999999999988764 5788888888999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcc----------
Q 039342 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG---------- 137 (248)
Q Consensus 68 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~---------- 137 (248)
|...|++..|..=++...+.. .-++.++--+-..+-..|+.+.++...++..+-+ |++......-..
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHH
Confidence 999999998877666655432 1245556666677777888888888888877543 555443222111
Q ss_pred --cccccchHHHHHHHHHHHHhcCCCCCHHHHH---HHHHHHHhcCchHHHHHHHHHHHH
Q 039342 138 --EFDDESNWQMVEYVFDKLNCEGYGLGMRFYN---ALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 138 --~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
.....++|-.+..-.+...+.........|| .+-.++...|++.+|.+...+..+
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 0223445555555555554443332233333 344455567777788777777664
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.74 E-value=2.3 Score=32.26 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=98.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHhhHH
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR--CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS-GILPSVMCYC 97 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~ 97 (248)
|-...|+--+. -.+.|++++|.+.|+.+.+.- -+-...+--.++.++.+.++.+.|....++..+. +-.|| .-|-
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~ 110 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYA 110 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHH
Confidence 33444554444 457899999999999997542 2334566667788889999999999999998764 33333 3455
Q ss_pred HHHHHHHhc-------CCHHH---HHHHHHHHHHC----CCCchHHhH-----------HHHhcccccccchHHHHHHHH
Q 039342 98 MLLAVYAKS-------NRWDD---AYGLLDEMHTN----RISNIHQVT-----------GQMIKGEFDDESNWQMVEYVF 152 (248)
Q Consensus 98 ~li~~~~~~-------~~~~~---a~~~~~~m~~~----~~~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~~ 152 (248)
.-|.+++.- .+... |..-|+++.+. .-.|+...- ...|..++.+.+.+..|..-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 455554432 23333 34444444332 222322221 112223455666777777777
Q ss_pred HHHHhc--CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 153 DKLNCE--GYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 153 ~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
+.|.+. ...-.....-.+..+|-..|..++|.+.-.-+..+
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 777765 11112233445666777777777777666555443
No 233
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=5.6 Score=36.60 Aligned_cols=117 Identities=11% Similarity=0.131 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcc
Q 039342 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137 (248)
Q Consensus 58 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~ 137 (248)
+..|+.+-.+-.+.|.+.+|.+-|= +. -|+..|.-+|+...+.|.+++-.+.+...++....|...+ .++.+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyi---ka---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYI---KA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHH---hc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHH
Confidence 3457777777777777766665442 21 2667888888888888888888888887777766665443 23333
Q ss_pred cccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 039342 138 EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190 (248)
Q Consensus 138 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 190 (248)
+.+.++..+.+++. .-|+......+-+-|...|.++.|.-+|...
T Consensus 1176 -yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1176 -YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred -HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 44444444433332 3466666777777777778877777776643
No 234
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.64 E-value=2.3 Score=35.15 Aligned_cols=138 Identities=10% Similarity=0.154 Sum_probs=74.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHH--Hhc
Q 039342 35 QGGRFEEAIKAYVEMEKVRCDPNE------RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY--AKS 106 (248)
Q Consensus 35 ~~~~~~~a~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~--~~~ 106 (248)
+.+++.++.++|.+.-++. .-++ ..-+.+|++|.. ++.+.+...+..+.+. .| ...|-.+..+. -+.
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 5677788888887774432 1221 223456666664 4566666666666643 22 23344444433 255
Q ss_pred CCHHHHHHHHHHHHHC--CCCc-----------hHHhHHHHhcccccccchHHHHHHHHHHHHhc----CCCCCHHHHHH
Q 039342 107 NRWDDAYGLLDEMHTN--RISN-----------IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE----GYGLGMRFYNA 169 (248)
Q Consensus 107 ~~~~~a~~~~~~m~~~--~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~ 169 (248)
+..++|.+.+..-.+. +..| ++..+..+...+....|.+.++..+++++... ....+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 6677777776655433 2211 12222223333345566667777666666544 23367777777
Q ss_pred HHHHHHhc
Q 039342 170 LLEALWCL 177 (248)
Q Consensus 170 li~~~~~~ 177 (248)
++-.+++.
T Consensus 173 ~vlmlsrS 180 (549)
T PF07079_consen 173 AVLMLSRS 180 (549)
T ss_pred HHHHHhHH
Confidence 77666654
No 235
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=3.7 Score=33.63 Aligned_cols=154 Identities=10% Similarity=0.099 Sum_probs=85.8
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH-hhHHHHHHHHHhcCCHH
Q 039342 33 FRQGGRFEEAIKAYVEMEKV-RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV-MCYCMLLAVYAKSNRWD 110 (248)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~ 110 (248)
.+..++...+.+++-.+... -++-|......+-+.+...|+.+.|...|++.+.. .|+. .....---.+.+.|+.+
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHh
Confidence 33456666666666555433 45667777888889999999999999999887754 2332 22222223344566666
Q ss_pred HHHHHHHHHHHCCC---Cch---------------------------HHhHHH-Hhcc-cccccchHHHHHHHHHHHHhc
Q 039342 111 DAYGLLDEMHTNRI---SNI---------------------------HQVTGQ-MIKG-EFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 111 ~a~~~~~~m~~~~~---~~~---------------------------~~~~~~-~l~~-~~~~~~~~~~a~~~~~~m~~~ 158 (248)
....+...+....- .|. ...... ++.+ .....++.+.|.-.|+..+..
T Consensus 284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 66666555533220 010 000011 1111 122334555555556554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 039342 159 GYGLGMRFYNALLEALWCLGLRERAARVLDE 189 (248)
Q Consensus 159 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 189 (248)
.. -+...|.-|+.+|...|++.+|.-+-+.
T Consensus 364 ap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 364 AP-YRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred ch-hhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 21 2566777777777777777776665544
No 236
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=2.9 Score=32.42 Aligned_cols=113 Identities=12% Similarity=-0.088 Sum_probs=79.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 039342 92 SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN-RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170 (248)
Q Consensus 92 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 170 (248)
|...|-.|-..|...|+.+.|..-|.+-.+- |-.|+...-..=+..+-.....-.++..++++....+.. |+.+-..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHHH
Confidence 7889999999999999999999999987643 322322221111111123344557888999998887544 66777777
Q ss_pred HHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHh
Q 039342 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW 207 (248)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 207 (248)
-..+...|++.+|...|+.|.+. -|.......+|.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 78899999999999999999875 333334455553
No 237
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.40 E-value=4.9 Score=34.95 Aligned_cols=86 Identities=7% Similarity=0.054 Sum_probs=53.6
Q ss_pred ccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchh-hhHHhh-----hhhh
Q 039342 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH-NKLVWS-----VDVH 212 (248)
Q Consensus 139 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~li~~-----~~~~ 212 (248)
+.+...+..|.++|..|-+ ...+++.....++|++|+.+-+...+ +.||+... ...+-. =..+
T Consensus 757 lk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHH
Confidence 4445556667777776644 24577777888899999888776543 34554321 111100 0246
Q ss_pred ccccchHHHHHHHHHHHHHHHHH
Q 039342 213 RMWEGGAYTAISVWLNKMYEMFM 235 (248)
Q Consensus 213 ~~~~~g~~~~~~~~~~~m~~~~~ 235 (248)
+|-+.|+-.+|..+++++....+
T Consensus 826 AfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhhhhh
Confidence 77788888888888888765543
No 238
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.40 E-value=0.039 Score=38.04 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=64.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC
Q 039342 28 AVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN 107 (248)
Q Consensus 28 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 107 (248)
.+|..+.+.+.+.....+++.+...+-..+....+.++..|++.++.++..++++ . .+..-...++..|-+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~----~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---T----SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---S----SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---c----ccccCHHHHHHHHHhcc
Confidence 3577777888889999999999887767778889999999999988888887776 1 22244456778888888
Q ss_pred CHHHHHHHHHHH
Q 039342 108 RWDDAYGLLDEM 119 (248)
Q Consensus 108 ~~~~a~~~~~~m 119 (248)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 888888888765
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.38 E-value=1.7 Score=29.53 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=74.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChhHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL---EAVLSVYCFAGLVDESK 78 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~---~~ll~~~~~~g~~~~a~ 78 (248)
|.+++..++..+...+ .+..-||=+|......-+-+...++++..-+ -.|...+ ..++.+|++.|.
T Consensus 16 G~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~----- 84 (161)
T PF09205_consen 16 GDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK----- 84 (161)
T ss_dssp T-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT------
T ss_pred chHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc-----
Confidence 5566666666655542 3445555555555555555555555544421 2222221 223333333332
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc
Q 039342 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
+..-.+.-++.....|+-|.-.+++.++.+.+ .++......+-.+ |.+-|+..++.+++.+.-+.
T Consensus 85 -------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~A-y~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 -------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANA-YKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHH-HHHTT-HHHHHHHHHHHHHT
T ss_pred -------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHH-HHHhcchhhHHHHHHHHHHh
Confidence 34556677888899999999999999987633 4555555555555 89999999999999999998
Q ss_pred CCC
Q 039342 159 GYG 161 (248)
Q Consensus 159 ~~~ 161 (248)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 875
No 240
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.28 E-value=3.1 Score=32.29 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cC-ChhHHHHHHHHHHH-CCCCcCHhhHHHHHHHHHhcCCHHH
Q 039342 36 GGRFEEAIKAYVEMEK-VRCDPNERTLEAVLSVYCF-AG-LVDESKEQFQEIKS-SGILPSVMCYCMLLAVYAKSNRWDD 111 (248)
Q Consensus 36 ~~~~~~a~~~~~~m~~-~~~~p~~~t~~~ll~~~~~-~g-~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~ 111 (248)
+..+.+|+.+|+...- ..+--|..+...+++.... .+ ....--++.+-+.. .+-.++..+.-.+|..+++.++|.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445667777764322 3455667777777776665 22 33333344444442 2445667777777777777777777
Q ss_pred HHHHHHHHHHC-CCCchHHhHHHHhcccccccchHHHHHHHHH
Q 039342 112 AYGLLDEMHTN-RISNIHQVTGQMIKGEFDDESNWQMVEYVFD 153 (248)
Q Consensus 112 a~~~~~~m~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 153 (248)
-+++++..... +...|...+..+|.. ....|+......+.+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~l-i~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKL-IVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHH-HHHcCCHHHHHHHhh
Confidence 77777766544 333455555555555 445555555555443
No 241
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.01 E-value=2.3 Score=30.16 Aligned_cols=99 Identities=9% Similarity=0.156 Sum_probs=45.3
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 039342 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGIL 90 (248)
Q Consensus 11 ~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 90 (248)
.+.+.+.+++|+...|..+|..+.+.|++.. +..+...++-+|+......+-.+.. ....+.++=-.|..+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH---
Confidence 3344455555666666666666666665432 3333444555555444443333322 122233332222221
Q ss_pred cCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039342 91 PSVMCYCMLLAVYAKSNRWDDAYGLLDEM 119 (248)
Q Consensus 91 p~~~~~~~li~~~~~~~~~~~a~~~~~~m 119 (248)
=...+..++..+...|++-+|+++.+..
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0113444555555556666666555543
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.00 E-value=4.2 Score=33.03 Aligned_cols=170 Identities=14% Similarity=0.043 Sum_probs=105.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCcCHhh
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---CDPNERTLEAVLSVYCF---AGLVDESKEQFQEIKSSGILPSVMC 95 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~ 95 (248)
+..+-..++-+|....+++...++.+.+...- +.-+...--...-++.| .|+.++|.+++..+....-.+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 33444566667999999999999999997651 11122222234445566 8999999999999665555678888
Q ss_pred HHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCchHH---hHHHHhcccccccchHHHHHHHH---H-HHHhcC
Q 039342 96 YCMLLAVYAK---------SNRWDDAYGLLDEMHTNRISNIHQ---VTGQMIKGEFDDESNWQMVEYVF---D-KLNCEG 159 (248)
Q Consensus 96 ~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~---~-~m~~~~ 159 (248)
|..+-..|-. ...+++|+..|.+--+.. |+.. -+..++...-.....-.+..++. . .+.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 8888777642 224788888888764433 2211 01111111000111112222332 2 222333
Q ss_pred C---CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 160 Y---GLGMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 160 ~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
. ..+--.+.+++.++.-.|+.++|.+..++|.+.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 345556678999999999999999999999865
No 243
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.87 E-value=4.8 Score=33.40 Aligned_cols=131 Identities=14% Similarity=0.109 Sum_probs=88.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhH-HHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLL 100 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li 100 (248)
...|...|.+..+..-++.|..+|-+..+.| +.++..+++++|..++. |+..-|..+|+.=... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567788888888888999999999999888 77888999999988775 6778888888764433 2455444 4667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-chHHhHHHHhcccccccchHHHHHHHHHHHHh
Q 039342 101 AVYAKSNRWDDAYGLLDEMHTNRIS-NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC 157 (248)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 157 (248)
..+.+-++-+.|..+|+.-...--. --..+|..+|.. -..-|+...+..+-+.|.+
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~Y-Es~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEY-ESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHH-HHhhcchHHHHhHHHHHHH
Confidence 7778888888888888843321100 113345555543 3344555555555444444
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.82 E-value=2.1 Score=29.06 Aligned_cols=104 Identities=11% Similarity=0.092 Sum_probs=57.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHhhHHH---HHHHHHhcC
Q 039342 32 AFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS-GILPSVMCYCM---LLAVYAKSN 107 (248)
Q Consensus 32 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~---li~~~~~~~ 107 (248)
+.+..|+.+.|++.|.+.... .+-....||.--.++.-.|+.++|.+=+++..+. |-+ +.....+ --..|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 345667777777777665432 2345566777777777777777776666665543 222 2222222 222344566
Q ss_pred CHHHHHHHHHHHHHCC----------CCchHHhHHHHhcc
Q 039342 108 RWDDAYGLLDEMHTNR----------ISNIHQVTGQMIKG 137 (248)
Q Consensus 108 ~~~~a~~~~~~m~~~~----------~~~~~~~~~~~l~~ 137 (248)
+.+.|..-|+..-+-| +.|-...++.++..
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~ 169 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLAD 169 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHH
Confidence 6666666665443333 33666666666554
No 245
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.78 E-value=0.34 Score=24.38 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 039342 61 LEAVLSVYCFAGLVDESKEQFQE 83 (248)
Q Consensus 61 ~~~ll~~~~~~g~~~~a~~~~~~ 83 (248)
|+.|-..|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444445555555555555544
No 246
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.75 E-value=1 Score=34.84 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHH-CCCCchHHhHHHHhccccc-ccchHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCchHHHHH
Q 039342 109 WDDAYGLLDEMHT-NRISNIHQVTGQMIKGEFD-DESNWQMVEYVFDKLNCE-GYGLGMRFYNALLEALWCLGLRERAAR 185 (248)
Q Consensus 109 ~~~a~~~~~~m~~-~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~ 185 (248)
+.+|+.+|+.... ..+.-+..+...++..... .+......-++.+.+... +-.++..+...+|+.+++.++|++-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4566666663221 2355566677666666544 333444455555555543 567888889999999999999999999
Q ss_pred HHHHHHHC-CCCCCcchhhhHHhhhhhhccccchHHHHHH
Q 039342 186 VLDEATKR-GLFPELFRHNKLVWSVDVHRMWEGGAYTAIS 224 (248)
Q Consensus 186 ~~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~ 224 (248)
+++..... +-.-|..-+..+| +...+.|+..-+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI-----~li~~sgD~~~~~ 258 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFI-----KLIVESGDQEVMR 258 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHH-----HHHHHcCCHHHHH
Confidence 99986654 4455666667777 6666777766433
No 247
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=92.71 E-value=2.8 Score=30.36 Aligned_cols=126 Identities=13% Similarity=0.028 Sum_probs=71.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCchHHh
Q 039342 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR---ISNIHQV 130 (248)
Q Consensus 54 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~ 130 (248)
+.|+...--.|-.+..+.|+..+|...|++-..--+.-|....-.+-++....+++..|...++.+.+.. .+|+...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3566666666777777777777777777776544344466666666667777777777777777765543 2344433
Q ss_pred HHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHH
Q 039342 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184 (248)
Q Consensus 131 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 184 (248)
...-. +...|.+..++.-|+.....-.-|.... .--..+.++|+.+++.
T Consensus 165 l~aR~---laa~g~~a~Aesafe~a~~~ypg~~ar~--~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFART---LAAQGKYADAESAFEVAISYYPGPQARI--YYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHH---HHhcCCchhHHHHHHHHHHhCCCHHHHH--HHHHHHHHhcchhHHH
Confidence 22211 3345566666666666665433332222 2233445555544443
No 248
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=92.69 E-value=2.6 Score=32.47 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh
Q 039342 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105 (248)
Q Consensus 26 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 105 (248)
+..=|.+++..++|.+++...-+.-+.--+.-..+....|-.|.+.+.+..+.++-+...+..-.-+...|.++...|..
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 34458899999999999877666533322333456777888899999999999999887654222244558888887776
Q ss_pred -----cCCHHHHHHHH
Q 039342 106 -----SNRWDDAYGLL 116 (248)
Q Consensus 106 -----~~~~~~a~~~~ 116 (248)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 58999999887
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.68 E-value=0.49 Score=24.99 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 039342 61 LEAVLSVYCFAGLVDESKEQFQEIKSS 87 (248)
Q Consensus 61 ~~~ll~~~~~~g~~~~a~~~~~~m~~~ 87 (248)
+..+-..|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555555555543
No 250
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=5.5 Score=33.56 Aligned_cols=183 Identities=10% Similarity=0.026 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCChhH
Q 039342 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA-------VLSVYCFAGLVDE 76 (248)
Q Consensus 4 ~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-------ll~~~~~~g~~~~ 76 (248)
++.|++-+....+.. .++.-++..-.+|...|....+...-..-.+.|-. ...-|+. +-.+|.+.++.+.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 445555555544432 34445555566666767666655555544443311 1111222 2235555666777
Q ss_pred HHHHHHHHHHCCCCcCHhhHH-------------------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhH
Q 039342 77 SKEQFQEIKSSGILPSVMCYC-------------------------MLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131 (248)
Q Consensus 77 a~~~~~~m~~~~~~p~~~~~~-------------------------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 131 (248)
+...|.+....--.|+..+-. .--..+.+.|++..|+..|.++.... |+..+.
T Consensus 317 ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~l 394 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARL 394 (539)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHH
Confidence 777766654322222211110 01123345566777777777766554 555554
Q ss_pred HHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
.+--..++.+.+.+..+..=.+...+.... ....|.-=..++....++++|.+.|.+-.+
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444455555555555444333333111 122222222223333455566666655443
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.66 E-value=3.6 Score=31.48 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=67.4
Q ss_pred CCchHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhcCChhH
Q 039342 1 GGLYKECQAILSRMSESGVA--RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDP-NERTLEAVLSVYCFAGLVDE 76 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~--~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p-~~~t~~~ll~~~~~~g~~~~ 76 (248)
+|++..|..-|....+.... -....+-=|-.++...|++++|..+|..+.+. +-.| -+..+--|-.+..+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 48899999999998875431 23344555889999999999999999999664 2222 23566677788899999999
Q ss_pred HHHHHHHHHHC
Q 039342 77 SKEQFQEIKSS 87 (248)
Q Consensus 77 a~~~~~~m~~~ 87 (248)
|...|+++.+.
T Consensus 234 A~atl~qv~k~ 244 (262)
T COG1729 234 ACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 252
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.63 E-value=4.7 Score=32.72 Aligned_cols=168 Identities=10% Similarity=0.022 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCcCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCchHHhHH
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSG---ILPSVMCYCMLLAVYAK---SNRWDDAYGLLDEMHTNRISNIHQVTG 132 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~ 132 (248)
.+...++-+|....+++.+.++.+.+.... +.-+..+--...-++.+ .|+-++|++++.........++..++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334456667999999999999999998751 11123333344556667 899999999999966655556555554
Q ss_pred HH--------hcccccccchHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcC-chHHHHHHH---H-HHHHCCCC
Q 039342 133 QM--------IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRF---YNALLEALWCLG-LRERAARVL---D-EATKRGLF 196 (248)
Q Consensus 133 ~~--------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g-~~~~a~~~~---~-~m~~~g~~ 196 (248)
.+ +.+........+.|...|.+--+. .||... +.+|+......- .-.+..++- . ...++|..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 32 222233444577777777654333 244332 222332222211 111223332 2 22244543
Q ss_pred CCc---chhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 197 PEL---FRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 197 p~~---~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
-.. ..+.+++ ....-.|+.+.+.+..+.|.+.
T Consensus 300 ~~~~dYWd~ATl~-----Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLL-----EASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHH-----HHHHHcCCHHHHHHHHHHHhhc
Confidence 333 3334444 5555577888888888888765
No 253
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.56 E-value=2.8 Score=29.96 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHh
Q 039342 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV-MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135 (248)
Q Consensus 57 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 135 (248)
....|..-++ ..+.+..++|+.-|..+.+.|...-+ ..---.-......|+-..|...|++.-.....|-..--..-+
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445555554 45678899999999999987644211 122223334567889999999999987665555333111112
Q ss_pred cc--cccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 136 KG--EFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 136 ~~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
++ .+...|.++.+....+-+...+-..-...-..|--+-.+.|++.+|.+.|..+...-..|-
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 21 1456788888888777776665554555556777778889999999999999877555553
No 254
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.52 E-value=0.45 Score=23.92 Aligned_cols=26 Identities=23% Similarity=0.109 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 166 FYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 166 ~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
+|+.|-+.|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778889999999999999998743
No 255
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.46 E-value=2.4 Score=30.98 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=54.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCcCHhhHHHHHHHHHhcCCH
Q 039342 33 FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS---GILPSVMCYCMLLAVYAKSNRW 109 (248)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~ 109 (248)
+.+.|+ +.|.+.|-.+...+.--|+..--.|...|. ..+.+++..++-...+. +-.+|+..+.+|...|-+.++.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 557777777777776555555555554444 67788888888776542 3367888889999999988888
Q ss_pred HHHH
Q 039342 110 DDAY 113 (248)
Q Consensus 110 ~~a~ 113 (248)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.38 E-value=2.5 Score=29.04 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC-CC-CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSS-GI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
..|+.-. ...+.|++++|.+.|+.+... -. .-.....-.++.+|.+.+++++|...++++.+..
T Consensus 12 ~ly~~a~-~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 12 ELYQEAQ-EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHH-HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3444333 345678999999999998865 11 1245677788899999999999999999887654
No 257
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=4.1 Score=33.04 Aligned_cols=99 Identities=11% Similarity=0.014 Sum_probs=53.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-----CC---------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHH
Q 039342 32 AFRQGGRFEEAIKAYVEMEKV-----RC---------DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC 97 (248)
Q Consensus 32 ~~~~~~~~~~a~~~~~~m~~~-----~~---------~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 97 (248)
.|.+.|++..|...|++..+. +. ..-...+..+.-+|.+.+++..|.+.-+.....+ ++|.-..-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 567788888887777764321 11 1122334455556666666666666666655543 22444433
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHH
Q 039342 98 MLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133 (248)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 133 (248)
---.+|...|+++.|+..|+++.+.. |++.....
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~ 329 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLE--PSNKAARA 329 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 44455555666666666666665432 44444433
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.90 E-value=4.9 Score=31.26 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=97.4
Q ss_pred HhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHH
Q 039342 24 DSFNAVIEAFRQGGRFE---EAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 100 (248)
.++..++.+|...+..+ +|..+++.+.+.. +-....+-.-++.+.+.++.+.+.+++.+|...- .-+...+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 46777888888887654 4566666664442 2224566667888888999999999999998762 22445666666
Q ss_pred HHHHh--cCCHHHHHHHHHHHHHCCCCchHH-hHHH-----Hhcccc----cccchHHHHHHHHHHHHhc-CCCCCHHHH
Q 039342 101 AVYAK--SNRWDDAYGLLDEMHTNRISNIHQ-VTGQ-----MIKGEF----DDESNWQMVEYVFDKLNCE-GYGLGMRFY 167 (248)
Q Consensus 101 ~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~-~~~~-----~l~~~~----~~~~~~~~a~~~~~~m~~~-~~~p~~~~~ 167 (248)
..+-. ......|...+..+....+.|... .... ++.... ......+.+..+++..... +.+.+..+-
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 66522 233456667777666555555443 1111 111101 1112255566666644433 444455554
Q ss_pred HHHHH-------HHHhcCchHHHHHHHHHH
Q 039342 168 NALLE-------ALWCLGLRERAARVLDEA 190 (248)
Q Consensus 168 ~~li~-------~~~~~g~~~~a~~~~~~m 190 (248)
.++.. .+.+.++++.|.+.|+--
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 44443 355678899999988743
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.77 E-value=7.1 Score=32.83 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=46.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 63 AVLSVYCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 63 ~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
.+-.++.+.|+.++|.+.|.+|.+. ...-.......||.++...+...++..++.+-.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 4555667889999999999998754 222234577889999999999999999999865443
No 260
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.76 E-value=2.3 Score=27.28 Aligned_cols=59 Identities=12% Similarity=-0.052 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHH
Q 039342 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206 (248)
Q Consensus 147 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 206 (248)
...+-++.+....+.|++....+.+++|-+.+++..|..+|+-.+.+ +.+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 44555566666788999999999999999999999999999987754 223333566665
No 261
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=91.16 E-value=4.5 Score=29.39 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=63.0
Q ss_pred CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC---CCCCHH
Q 039342 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG---YGLGMR 165 (248)
Q Consensus 89 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~ 165 (248)
..|+...--.|-.+....|+..+|...|++-...-..-+....-.+..+ .-..+++..+...++.+-+.. -+||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A-qfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA-QFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH-HHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 3566666666777777777777777777776554444455555555544 333455666666776665542 23333
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 166 FYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 166 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
.-.+-+.+...|...+|+.-|+.....
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 345566777777777777777776653
No 262
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=8.4 Score=32.51 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=109.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH---
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA--- 101 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~--- 101 (248)
-+-.+.++.-+..+++.+.+-+....+.. -+..-++..-.+|...|+.......-+.-.+.|-. ...-|+.+-.
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~ 302 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHH
Confidence 35556777778888888888888877654 44444566667788888877777666665555432 2333444444
Q ss_pred ----HHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcc------------------------cccccchHHHHHHHHH
Q 039342 102 ----VYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG------------------------EFDDESNWQMVEYVFD 153 (248)
Q Consensus 102 ----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~------------------------~~~~~~~~~~a~~~~~ 153 (248)
+|.+.++.+.++..|.+-......|+...=...... .+-..+++..|...|.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 455567788899998887665555544332221110 1224567888888888
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 154 KLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 154 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
++.... +-|...|...--+|.+.|.+..|.+=.+...+.
T Consensus 383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 888776 337788888888888999888888766655543
No 263
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.10 E-value=9.5 Score=33.03 Aligned_cols=184 Identities=9% Similarity=0.010 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHH--H-HHhcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-
Q 039342 4 YKECQAILSRMSESGVARNSDSFNAVIE--A-FRQGGRFEEAIKAYVEMEK-------VRCDPNERTLEAVLSVYCFAG- 72 (248)
Q Consensus 4 ~~~a~~~~~~m~~~g~~~~~~~y~~li~--~-~~~~~~~~~a~~~~~~m~~-------~~~~p~~~t~~~ll~~~~~~g- 72 (248)
...|.+.++...+.|.. .....-..+. + +....|++.|+..|+...+ .|. .....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCC
Confidence 46788888888776652 2222222222 2 4567789999999999866 452 224455666666543
Q ss_pred ----ChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHH
Q 039342 73 ----LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK-SNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQM 147 (248)
Q Consensus 73 ----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (248)
+.+.|..++...-+.|. |+....-..+.-... ..+...|.+.|..--+.|..+-.--+..+.........+...
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 56778888888877764 344433333333333 356789999999988888544332222222222445567788
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCC
Q 039342 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194 (248)
Q Consensus 148 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 194 (248)
|..++...-+.| .|...---..+..+.. +.++.+.-.+..+.+.|
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 888888888887 3332222333444444 66666666655555444
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.09 E-value=6.7 Score=31.29 Aligned_cols=85 Identities=13% Similarity=0.062 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCcCHhhHHHHHHHHHhcCCHHHH
Q 039342 36 GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS---GILPSVMCYCMLLAVYAKSNRWDDA 112 (248)
Q Consensus 36 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a 112 (248)
.|...+|-..++++.+. .+-|...++-.=.+|.-.|+.+.....+++.... +++..+.+-...--++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34444455555555432 3455555555556666666666666666665532 2211222222233333455666666
Q ss_pred HHHHHHHHH
Q 039342 113 YGLLDEMHT 121 (248)
Q Consensus 113 ~~~~~~m~~ 121 (248)
++.-++-.+
T Consensus 195 Ek~A~ralq 203 (491)
T KOG2610|consen 195 EKQADRALQ 203 (491)
T ss_pred HHHHHhhcc
Confidence 666655443
No 265
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.61 E-value=0.87 Score=23.29 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEI 84 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m 84 (248)
+++.+-..|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4445555555555555555555444
No 266
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.48 E-value=1 Score=22.99 Aligned_cols=29 Identities=31% Similarity=0.304 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 164 MRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
..+++.+-..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45788889999999999999999988653
No 267
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.00 E-value=7.5 Score=33.53 Aligned_cols=133 Identities=13% Similarity=0.038 Sum_probs=89.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 103 (248)
..-+.+.+.+-+.|-.++|+++ .+|..- -.....+.|+++.|.++..+.. +..-|..|-++.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 3555666667777777777654 333321 1234456788888887765533 677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHH
Q 039342 104 AKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183 (248)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 183 (248)
...+++..|.+.|..-++-+ .++.. +...|+-+....+-...++.|. .|...-+|...|+++++
T Consensus 677 l~~~~l~lA~EC~~~a~d~~---------~LlLl-~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARDLG---------SLLLL-YTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEEC 740 (794)
T ss_pred hhcccchhHHHHHHhhcchh---------hhhhh-hhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHH
Confidence 99999999999998765433 33333 4445554555555555555554 46677788899999999
Q ss_pred HHHHHHH
Q 039342 184 ARVLDEA 190 (248)
Q Consensus 184 ~~~~~~m 190 (248)
.+++.+-
T Consensus 741 ~~lLi~t 747 (794)
T KOG0276|consen 741 LELLIST 747 (794)
T ss_pred HHHHHhc
Confidence 9998753
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.95 E-value=1.8 Score=22.78 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=25.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKV 52 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~ 52 (248)
.+|..+-..|...|++++|.++|++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46778889999999999999999999876
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.92 E-value=8.7 Score=30.69 Aligned_cols=149 Identities=8% Similarity=0.001 Sum_probs=101.0
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV---RCDPNERTLEAVLSVYCFAGLVDESK 78 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~t~~~ll~~~~~~g~~~~a~ 78 (248)
|...+|-..++++.+. .+.|...++..=.+|.-.|+...-...+++..-. +++..+......--++...|-+++|+
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 6677777888887653 5578888888889999999998888888887433 33333333344444556889999999
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCchHHhHHHHhcccccccchHHHHHHHHHH
Q 039342 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR----ISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 154 (248)
+.-++-.+.+ +.|...-.+.-..+--++++.++.++..+-.+.- ....+.-+...+- +...+.++.|..+|+.
T Consensus 196 k~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~--~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 196 KQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALF--HIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHh--hhcccchhHHHHHHHH
Confidence 9888877654 3366777788888888899999988876543221 1112222222222 4455778888888865
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.72 E-value=4.8 Score=27.39 Aligned_cols=105 Identities=12% Similarity=0.022 Sum_probs=69.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhc--ccccccch
Q 039342 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK--GEFDDESN 144 (248)
Q Consensus 67 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~--~~~~~~~~ 144 (248)
+.+..|+++.|.+.|.+....- +-....||.-..++--.|+.++|++-+++..+-.-.-+.......+. ..|+..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 5678899999999998877641 22678899999999999999999998888765432223333332222 11455566
Q ss_pred HHHHHHHHHHHHhcC----------CCCCHHHHHHHHH
Q 039342 145 WQMVEYVFDKLNCEG----------YGLGMRFYNALLE 172 (248)
Q Consensus 145 ~~~a~~~~~~m~~~~----------~~p~~~~~~~li~ 172 (248)
-+.|..=|+..-+.| +.|-...+|-++.
T Consensus 131 dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa 168 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLA 168 (175)
T ss_pred hHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHH
Confidence 666666655544443 4576667776664
No 271
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.71 E-value=3.7 Score=26.12 Aligned_cols=67 Identities=12% Similarity=-0.022 Sum_probs=47.6
Q ss_pred ccccc-hHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHH
Q 039342 139 FDDES-NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206 (248)
Q Consensus 139 ~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 206 (248)
+.+.. +.-.+.+-++.+...+..|++....+.+++|-+.+++..|..+|+-.+.+ +..+...|..++
T Consensus 16 F~~~~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 16 FNRPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred hCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 44442 34455566667777788999999999999999999999999999877743 122334555555
No 272
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.36 E-value=5.8 Score=27.90 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=23.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHhhHH-HHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 69 CFAGLVDESKEQFQEIKSSGILPSVMCYC-MLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 69 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
.+.++.+.+..++..++-. .|...... .--..+.+.|+|++|+++|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3444555555555555432 23221111 1112234555566666666555433
No 273
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.05 E-value=8.9 Score=31.22 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=70.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhH-HHHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY-CMLLA 101 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~ 101 (248)
..+++.+..++.+.+++..|++.-+.....+ ++|.-..----.+|...|+++.|+..|+.+.+. .|+...- +-|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 4578888889999999999999988887765 466666666677899999999999999999885 5755444 44444
Q ss_pred HHHhcCCH-HHHHHHHHHHHH
Q 039342 102 VYAKSNRW-DDAYGLLDEMHT 121 (248)
Q Consensus 102 ~~~~~~~~-~~a~~~~~~m~~ 121 (248)
.-.+.... +...++|..|-.
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 44444443 334677777754
No 274
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=88.99 E-value=2.1 Score=23.24 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=14.0
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHhhHHHHH
Q 039342 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 71 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 100 (248)
.|..+++..++++|.+.|+..+...|..++
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 344444444455554444444444444433
No 275
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.91 E-value=17 Score=32.76 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=51.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHH
Q 039342 32 AFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111 (248)
Q Consensus 32 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 111 (248)
.+.+.|++++|..-|-+-... +.| .-+|.-|....++..--.+++.+.+.|+. +...-..|+.+|.+.++.++
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 344678888887776664321 222 23556666666666667777777777765 55566777788887777766
Q ss_pred HHHHHHHH
Q 039342 112 AYGLLDEM 119 (248)
Q Consensus 112 a~~~~~~m 119 (248)
-.++.+..
T Consensus 450 L~efI~~~ 457 (933)
T KOG2114|consen 450 LTEFISKC 457 (933)
T ss_pred HHHHHhcC
Confidence 65555543
No 276
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.84 E-value=13 Score=31.07 Aligned_cols=131 Identities=8% Similarity=0.085 Sum_probs=84.5
Q ss_pred CchHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCh
Q 039342 2 GLYKECQAILSRMSESGV-ARN----SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV--YCFAGLV 74 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~-~~~----~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~g~~ 74 (248)
|++.+|+++|.++-+..- .|. ...-+.+|++|... +.+.....+....+. .| ...|-.+..+ +.+.+++
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhH
Confidence 578899999999865422 111 23456677887755 355555555555433 23 2345555444 4578899
Q ss_pred hHHHHHHHHHHHC--CCC------------cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----chHHhHHHHhc
Q 039342 75 DESKEQFQEIKSS--GIL------------PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS----NIHQVTGQMIK 136 (248)
Q Consensus 75 ~~a~~~~~~m~~~--~~~------------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~~l~ 136 (248)
++|.+.+....+. +-. +|-.-=+..+.++...|++.++..+++++...=.+ -+..+|+.++.
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 9999999888754 322 22233356677888999999999999998765433 56667776543
No 277
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=88.58 E-value=4.5 Score=27.18 Aligned_cols=43 Identities=14% Similarity=0.266 Sum_probs=22.3
Q ss_pred HHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120 (248)
Q Consensus 78 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 120 (248)
.+-++.+....+.|++.+...-+++|-+.+++..|.++|+-+.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555443
No 278
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.27 E-value=13 Score=30.45 Aligned_cols=190 Identities=15% Similarity=0.147 Sum_probs=114.7
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChhH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFR--QGGRFEEAIKAYVEMEKVRCDPNERTL--EAVLSVYCFAGLVDE 76 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~g~~~~ 76 (248)
+||-..|.++-.+-.+. +.-|....-.++.+-. -.|+++.|.+-|+.|... |...-. ..|.-.--+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 46666777666554321 2234455555555443 469999999999999752 333222 234444457788888
Q ss_pred HHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-chHHhH-HH-Hhcc--cccccchHHHHHH
Q 039342 77 SKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIHQVT-GQ-MIKG--EFDDESNWQMVEY 150 (248)
Q Consensus 77 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~-~~-~l~~--~~~~~~~~~~a~~ 150 (248)
|..+-+..-+. .| -...+.+.+...+..|+|+.|+++++.-++..+. ++..-- .. ++.+ ...-..+...+..
T Consensus 173 Ar~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 173 ARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 88887776554 34 3578899999999999999999999987654332 222111 11 1111 0111122233333
Q ss_pred HHHHHHhcCCCCCHHHH-HHHHHHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 151 VFDKLNCEGYGLGMRFY-NALLEALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 151 ~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
.-. ...+..||..-- ...-+++.+.|+..++-.+++.+=+..-.|+
T Consensus 251 ~A~--~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 251 DAL--EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHH--HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 222 233455554432 2345789999999999999999877655554
No 279
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.97 E-value=1.7 Score=38.02 Aligned_cols=36 Identities=8% Similarity=0.142 Sum_probs=21.2
Q ss_pred cchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcC
Q 039342 199 LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMG 237 (248)
Q Consensus 199 ~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~ 237 (248)
..|+..|+.-.-...+...|++++|. +.+.+.++-|
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL---~~i~~L~liP 535 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQAL---DIIEKLDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHH---HHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHH---HHHHhCCCCC
Confidence 45666666665566777888888864 4555555666
No 280
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=87.87 E-value=2.9 Score=22.65 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=30.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 039342 30 IEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67 (248)
Q Consensus 30 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 67 (248)
+....+.|-.+++..++++|.+.|+..+...|..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33445677788899999999999999999888887764
No 281
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.49 E-value=13 Score=33.30 Aligned_cols=92 Identities=17% Similarity=0.266 Sum_probs=51.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS----VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~----~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 100 (248)
....-|...++...++-|..+-+. .+..+ .+...+.. -+.+.|++++|..-|-+-... +.|+ -+|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 344556666777777777665443 22222 23333333 345677777777666544332 2222 245
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCch
Q 039342 101 AVYAKSNRWDDAYGLLDEMHTNRISNI 127 (248)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~~~~~~ 127 (248)
.-|....++..--..++.+.+.|+...
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla~~ 431 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLANS 431 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccccc
Confidence 555666667777777777777776443
No 282
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=87.44 E-value=7.6 Score=26.88 Aligned_cols=83 Identities=13% Similarity=0.052 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHH
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRI-----SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNA 169 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 169 (248)
..|+++......+++.....+++.+.--.. ..+...|..++.+.......--.+..+|.-|++.+..++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 355555555555666666666555521110 123344555555532222224455566666666666667777777
Q ss_pred HHHHHHhc
Q 039342 170 LLEALWCL 177 (248)
Q Consensus 170 li~~~~~~ 177 (248)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77766655
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.12 E-value=8.5 Score=27.12 Aligned_cols=103 Identities=15% Similarity=0.074 Sum_probs=59.7
Q ss_pred HhHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHH
Q 039342 24 DSFNAVIE---AFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV-LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99 (248)
Q Consensus 24 ~~y~~li~---~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 99 (248)
.+.+.||. .-.+.++.+++..+++-++-. .|.......+ -..+.+.|+|++|..+|+++.+.. |....-..|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 33444444 445678999999999998754 4555443322 345678899999999999987653 444444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCchHHh
Q 039342 100 LAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130 (248)
Q Consensus 100 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 130 (248)
+..|.....-..=...-++..+.+-.|+...
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~~d~~a~~ 114 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESGADPDARA 114 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCCChHHHH
Confidence 5444433322222222334445554444443
No 284
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.09 E-value=0.26 Score=33.89 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=52.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
+.++.....++.+...+...+....+.++..|++.++.+...++++.. .++ -...++..|-+.|.++.+.-++
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~--~~y-----d~~~~~~~c~~~~l~~~a~~Ly 93 (143)
T PF00637_consen 21 NQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS--NNY-----DLDKALRLCEKHGLYEEAVYLY 93 (143)
T ss_dssp T-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS--SSS------CTHHHHHHHTTTSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc--ccc-----CHHHHHHHHHhcchHHHHHHHH
Confidence 345555667777777666677999999999999998888888887721 122 2245667777777777777666
Q ss_pred HHHH
Q 039342 82 QEIK 85 (248)
Q Consensus 82 ~~m~ 85 (248)
.++.
T Consensus 94 ~~~~ 97 (143)
T PF00637_consen 94 SKLG 97 (143)
T ss_dssp HCCT
T ss_pred HHcc
Confidence 6543
No 285
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.02 E-value=2.7 Score=22.35 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=11.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 039342 100 LAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 100 i~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
-.+|...|+.+.|.+++++....
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHHc
Confidence 34555555555555555555443
No 286
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.90 E-value=13 Score=29.05 Aligned_cols=148 Identities=9% Similarity=0.041 Sum_probs=80.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHH
Q 039342 31 EAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110 (248)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 110 (248)
......|+..+|..+|+......- -+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345667888888888888765432 2234556678888888888888888888764321122222223344444444444
Q ss_pred HHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHH-HHhc-CCCCCHHHHHHHHHHHHhcCchHHH
Q 039342 111 DAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK-LNCE-GYGLGMRFYNALLEALWCLGLRERA 183 (248)
Q Consensus 111 ~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~-~~~p~~~~~~~li~~~~~~g~~~~a 183 (248)
+...+-.+.-.. |++.-...-+.-.+...|+.+.|.+.+-. +.+. |.. |...-..+++.+.-.|..|.+
T Consensus 221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence 444444444333 43333322222224445555666554444 4333 443 555566777777766654443
No 287
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.83 E-value=18 Score=30.71 Aligned_cols=164 Identities=10% Similarity=0.047 Sum_probs=106.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHH
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 100 (248)
.|-...-+++..+..+..+.-+..+-.+|..-| -+-..|-.++.+|... .-+.-..+|+++.+..+ +.....--+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReL 138 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGREL 138 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHH
Confidence 355666778888888888888888888887654 4556778888888887 56677888888877643 344444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-----chHHhHHHHhcccccccchHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q 039342 101 AVYAKSNRWDDAYGLLDEMHTNRIS-----NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE-GYGLGMRFYNALLEAL 174 (248)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~ 174 (248)
..+...++.+.+...|......-++ .-...|..+..- -+.+.+....+...++.. |..--...+.-+-.-|
T Consensus 139 a~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~---i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL---IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh---ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 4444447777777777776543322 122233333331 134445555665555544 5555566677777888
Q ss_pred HhcCchHHHHHHHHHHHH
Q 039342 175 WCLGLRERAARVLDEATK 192 (248)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~ 192 (248)
....++++|.+++..+.+
T Consensus 216 s~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 216 SENENWTEAIRILKHILE 233 (711)
T ss_pred ccccCHHHHHHHHHHHhh
Confidence 888999999999886654
No 288
>PHA02875 ankyrin repeat protein; Provisional
Probab=86.20 E-value=5.2 Score=33.01 Aligned_cols=70 Identities=19% Similarity=0.103 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHHHHHHH
Q 039342 9 AILSRMSESGVARNSDS--FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER--TLEAVLSVYCFAGLVDESKEQFQ 82 (248)
Q Consensus 9 ~~~~~m~~~g~~~~~~~--y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~ 82 (248)
++++.+.+.|..|+... ..+.+..++..|+.+- .+.+.+.|..|+.. .....+...++.|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 34455556677666532 3445666677787754 44555566665532 12234556667788877665554
No 289
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.65 E-value=9.4 Score=29.83 Aligned_cols=71 Identities=18% Similarity=-0.001 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCchHHhH
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH-----TNRISNIHQVT 131 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~~ 131 (248)
+++..-+.|..+|.+.+|.++.++..... +.+...|-.++..+...|+--.|.+-++++. +-|+..+....
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 56677788888999999998888877653 3367778888888888888777777666653 33555555443
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.63 E-value=11 Score=26.20 Aligned_cols=51 Identities=10% Similarity=0.161 Sum_probs=31.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 69 CFAGLVDESKEQFQEIKSSGILPSV---MCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 69 ~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
...++++++..+++.|+-. .|.. .++... -+...|+|++|.++|++..+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 4567777777777777653 3432 233332 3456677777777777776654
No 291
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.34 E-value=3.2 Score=22.10 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=15.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 039342 64 VLSVYCFAGLVDESKEQFQEIKSS 87 (248)
Q Consensus 64 ll~~~~~~g~~~~a~~~~~~m~~~ 87 (248)
+-.+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666777777777777766644
No 292
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=83.97 E-value=17 Score=27.78 Aligned_cols=174 Identities=15% Similarity=0.084 Sum_probs=108.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHH
Q 039342 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSS-GILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133 (248)
Q Consensus 56 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 133 (248)
|-...|+.-+.. .+.|++++|.+.|+.+... ...| ...+--.++.++-+.++.+.|+..+++....--.....-|..
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 444566665554 4679999999999999854 2222 456677778888899999999999999876532222222222
Q ss_pred Hhcc---cc---cccchHHHHHHHHHHHHh---c----CCCCCHHHH------------HHHHHHHHhcCchHHHHHHHH
Q 039342 134 MIKG---EF---DDESNWQMVEYVFDKLNC---E----GYGLGMRFY------------NALLEALWCLGLRERAARVLD 188 (248)
Q Consensus 134 ~l~~---~~---~~~~~~~~a~~~~~~m~~---~----~~~p~~~~~------------~~li~~~~~~g~~~~a~~~~~ 188 (248)
.|.+ .. ...++...+..-+..+.+ . ...||...- -.+-+-|.+.|.+-.|..-++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 2222 11 123344444444444433 2 334444331 134467889999999999999
Q ss_pred HHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 189 EATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 189 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
+|.+. .+-+..+...|.+ +..+|-..|-.++|.+.-+-+...
T Consensus 192 ~v~e~-y~~t~~~~eaL~~--l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 192 EVLEN-YPDTSAVREALAR--LEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHhc-cccccchHHHHHH--HHHHHHHhCChHHHHHHHHHHHhc
Confidence 99987 4445555555543 337777788777777765555444
No 293
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.76 E-value=13 Score=27.82 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 039342 28 AVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE 83 (248)
Q Consensus 28 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 83 (248)
..++.+.+.+..++++...++-.+.+ +-|..+-..++..+|-.|+|++|..-++-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 34445555555555555555443332 22333334455555555555555544433
No 294
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.54 E-value=2.2 Score=19.52 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=9.6
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 039342 98 MLLAVYAKSNRWDDAYGLLD 117 (248)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~ 117 (248)
.+-.++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34444455555555554443
No 295
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.44 E-value=10 Score=27.56 Aligned_cols=60 Identities=12% Similarity=-0.046 Sum_probs=34.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH-CCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 63 AVLSVYCFAGLVDESKEQFQEIKS-SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 63 ~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
..+......++.+......+...+ ....|++.+|..++.++...|+.++|.+...++..-
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333344444444444444332 234567777777777777777777777777766543
No 296
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.39 E-value=7.7 Score=34.25 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=45.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 103 (248)
-+.+--+.-+..-|+..+|.++-.+.+ -||-..|-.=+.+++..++|++-+++-+..+ ++.-|.-.+.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344445555555566666655555544 3555666666666666666555433332222 234455556666
Q ss_pred HhcCCHHHHHHHHHH
Q 039342 104 AKSNRWDDAYGLLDE 118 (248)
Q Consensus 104 ~~~~~~~~a~~~~~~ 118 (248)
.+.|+.++|.+.+-+
T Consensus 755 ~~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPR 769 (829)
T ss_pred HhcccHHHHhhhhhc
Confidence 666666666655553
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.37 E-value=3.8 Score=19.80 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKS 86 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~ 86 (248)
+|..+-.+|...|++++|...|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 444555555555555555555555543
No 298
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.16 E-value=16 Score=26.87 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=53.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCchHHhHHHHhcccccccc
Q 039342 67 VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN---RISNIHQVTGQMIKGEFDDES 143 (248)
Q Consensus 67 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~~l~~~~~~~~ 143 (248)
-+.+.|+ +.|.+.|-.+...+..-++...-.|...|. ..+.+++..++.+..+. +-.++...+.++... +...+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~-~~~~~ 192 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASI-YQKLK 192 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HHHhc
Confidence 3445454 677888888887766656666666666666 67888999988877543 335777888887766 55556
Q ss_pred hHHHH
Q 039342 144 NWQMV 148 (248)
Q Consensus 144 ~~~~a 148 (248)
+++.|
T Consensus 193 ~~e~A 197 (203)
T PF11207_consen 193 NYEQA 197 (203)
T ss_pred chhhh
Confidence 65555
No 299
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.01 E-value=8 Score=28.88 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCchHHhHHHHhcc
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN--RISNIHQVTGQMIKG 137 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~~l~~ 137 (248)
|.+..++.+.+.+.++++....++-.+.+ +.+..+-..+++.+|-.|+|++|..-++-.-+- ...+-..+|..++..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45667788888999999999887766653 236677888999999999999998877755332 234556677777764
No 300
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.87 E-value=9.1 Score=27.85 Aligned_cols=31 Identities=3% Similarity=-0.169 Sum_probs=14.9
Q ss_pred chHHhHHHHhcccccccchHHHHHHHHHHHHh
Q 039342 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC 157 (248)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 157 (248)
|+..++...+.. +...|+.++|.++..++..
T Consensus 142 P~~~~~~~~a~~-l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALA-LALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Confidence 444444444433 4444555555555555444
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=81.79 E-value=25 Score=28.09 Aligned_cols=184 Identities=15% Similarity=0.120 Sum_probs=93.9
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChhHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC----DPNERTLEAVLSVYCFAGLVDES 77 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~t~~~ll~~~~~~g~~~~a 77 (248)
|+|+...+........ .++...|.++... +.++.+++...++...+.-. ......|........+...+.+.
T Consensus 12 ~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~El 87 (352)
T PF02259_consen 12 GDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVEL 87 (352)
T ss_pred CChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHH
Confidence 5566644444444321 2355566666555 88999999888888754311 11223333333333333334444
Q ss_pred HHHHHHHHHCCCCcCHhhHHHHHHHHHh-----cCCHHHHHHHH---HHHHH--CCCCchHHhHHHHhcccccccchHHH
Q 039342 78 KEQFQEIKSSGILPSVMCYCMLLAVYAK-----SNRWDDAYGLL---DEMHT--NRISNIHQVTGQMIKGEFDDESNWQM 147 (248)
Q Consensus 78 ~~~~~~m~~~~~~p~~~~~~~li~~~~~-----~~~~~~a~~~~---~~m~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (248)
.++.+-..... .+......++..+.. .++++.-..++ .-+.. ........++..+... +.+.|.++.
T Consensus 88 ee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~-aRk~g~~~~ 164 (352)
T PF02259_consen 88 EEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL-ARKAGNFQL 164 (352)
T ss_pred HHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-HHHCCCcHH
Confidence 44433332110 011222222222211 11111111111 11111 1111223344444444 888999999
Q ss_pred HHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 148 VEYVFDKLNCEGYGL---GMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 148 a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
|...+..+...+..+ ++...-.-.+.+...|+..+|...+++..+
T Consensus 165 A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 165 ALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999888754222 345555667788889999999999988776
No 302
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=81.78 E-value=1.8 Score=29.34 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 039342 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67 (248)
Q Consensus 37 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 67 (248)
|.-..|..+|+.|.++|-+||. |+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3334455666666666666653 5555543
No 303
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.57 E-value=4.3 Score=19.22 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=16.4
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHC
Q 039342 170 LLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
+-.++.+.|++++|.++|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 445566677777887777776653
No 304
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=81.35 E-value=18 Score=26.21 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCCCC--HHHHHH-----HHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh
Q 039342 39 FEEAIKAYVEMEKVRCDPN--ERTLEA-----VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105 (248)
Q Consensus 39 ~~~a~~~~~~m~~~~~~p~--~~t~~~-----ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 105 (248)
.+.|+.+|+...+.--.|. ...-.. .+-.|.+.|.+++|.+++++..+. |+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHH
Confidence 3566666666654432221 111111 223566666666666666666542 344433444433333
No 305
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=81.25 E-value=18 Score=26.19 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHcCCCCC--HH-----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 039342 4 YKECQAILSRMSESGVARN--SD-----SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73 (248)
Q Consensus 4 ~~~a~~~~~~m~~~g~~~~--~~-----~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 73 (248)
++.|+.+|+.+.+.--.|. .. .=-..+..|.+.|.+++|.+++++..+ .|+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 5789999999986543331 11 223345679999999999999999876 4666666666665555544
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=81.18 E-value=2.8 Score=20.67 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhcCchHHHH
Q 039342 163 GMRFYNALLEALWCLGLRERAA 184 (248)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~a~ 184 (248)
+...|+.+-..|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 6788888999999999998885
No 307
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.24 E-value=19 Score=25.91 Aligned_cols=128 Identities=12% Similarity=0.168 Sum_probs=58.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHh-hHHHHHH--HHHhcCCH
Q 039342 34 RQGGRFEEAIKAYVEMEKVRCDPNERTL-EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM-CYCMLLA--VYAKSNRW 109 (248)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~--~~~~~~~~ 109 (248)
++.+..++|+.-|..+.+.|..-=+..- --.-......|+...|...|++.-...-.|-.. -..-|=. .+..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4455566666666666665543211110 111223445666666666666665443233222 1111111 23355666
Q ss_pred HHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCC
Q 039342 110 DDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL 162 (248)
Q Consensus 110 ~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 162 (248)
+....-.+.+-..+-+. ..+-...+--..-+.|++..+...|..+......|
T Consensus 149 ~dV~srvepLa~d~n~m-R~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPM-RHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChh-HHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 66666665554433222 22222222211334566666666666665543333
No 308
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.17 E-value=24 Score=27.47 Aligned_cols=88 Identities=6% Similarity=-0.081 Sum_probs=50.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcc----ccc
Q 039342 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG----EFD 140 (248)
Q Consensus 65 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~----~~~ 140 (248)
|.+++..++|.++....-+--+.--..-..+....|-.|++.++...+.++-..-....-.-...-|..+..- .+.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 6778888888777665544433322223556677777788888888777777665443221112223333322 234
Q ss_pred ccchHHHHHHHH
Q 039342 141 DESNWQMVEYVF 152 (248)
Q Consensus 141 ~~~~~~~a~~~~ 152 (248)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 456666666654
No 309
>PHA02875 ankyrin repeat protein; Provisional
Probab=79.39 E-value=8.2 Score=31.82 Aligned_cols=80 Identities=14% Similarity=0.039 Sum_probs=46.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHh--hHHHHHHHHHh
Q 039342 30 IEAFRQGGRFEEAIKAYVEMEKVRCDPNERT--LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM--CYCMLLAVYAK 105 (248)
Q Consensus 30 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~ 105 (248)
+...++.|+.+.+ +.+.+.|..|+... ..+.+...++.|+.+ +.+.+.+.|..|+.. ...+.+...+.
T Consensus 6 L~~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHH
Confidence 4455566776554 44445687776543 234566666777775 444555566655432 12334555667
Q ss_pred cCCHHHHHHHHH
Q 039342 106 SNRWDDAYGLLD 117 (248)
Q Consensus 106 ~~~~~~a~~~~~ 117 (248)
.|+.+.+..+++
T Consensus 78 ~g~~~~v~~Ll~ 89 (413)
T PHA02875 78 EGDVKAVEELLD 89 (413)
T ss_pred CCCHHHHHHHHH
Confidence 788777666654
No 310
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.38 E-value=24 Score=26.49 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 164 MRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
+.||--+-.-+...|+.++|..+|+-...+
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 457778888888999999999999876654
No 311
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.16 E-value=9.7 Score=23.23 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=19.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhHHHH
Q 039342 35 QGGRFEEAIKAYVEMEKVRCDPNE--RTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 35 ~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~ 79 (248)
..++.++|+..|....+.-..|.. .++..++.+|+..|++.++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555444333221111 233444555555555444443
No 312
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=79.09 E-value=13 Score=23.12 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=40.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS 86 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 86 (248)
+...|..-++.....+. +++ ++|+-....|+..|...|.+++....-.--.+...++++.|..
T Consensus 9 ~~~~~k~~~~rk~~Ls~-eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLSA-EEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred hHHHHHHHHHHHhccCH-HHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 44555555544333332 222 6777777778888888888777777777677777777777753
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.01 E-value=44 Score=29.23 Aligned_cols=77 Identities=19% Similarity=0.110 Sum_probs=50.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHH
Q 039342 32 AFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111 (248)
Q Consensus 32 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 111 (248)
...+.|+.+.|.++..+. -+..-|..|-++..+.|++..|.+.|...+ -|..|+-.+...|+-+.
T Consensus 646 lal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhH
Confidence 345677777777776653 344567788888888888888887776544 24456666666666665
Q ss_pred HHHHHHHHHHCC
Q 039342 112 AYGLLDEMHTNR 123 (248)
Q Consensus 112 a~~~~~~m~~~~ 123 (248)
...+-..-.+.|
T Consensus 711 l~~la~~~~~~g 722 (794)
T KOG0276|consen 711 LAVLASLAKKQG 722 (794)
T ss_pred HHHHHHHHHhhc
Confidence 555555555555
No 314
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.00 E-value=29 Score=27.22 Aligned_cols=120 Identities=12% Similarity=0.045 Sum_probs=68.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHH---HHhcccccc
Q 039342 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG---QMIKGEFDD 141 (248)
Q Consensus 65 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~~l~~~~~~ 141 (248)
.......|++..|..+|+...+..-. +...--.+..+|...|+.+.|..++..+....-........ .++.. ...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q-aa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ-AAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH-Hhc
Confidence 34556778888888888887764211 35566678888888888888888888775443222111111 11211 222
Q ss_pred cchHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 142 ESNWQMVEYVFDKLNCEGYGL-GMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 142 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
.++.....+ .... .| |...--.+-..+...|+.+.|.+.+-.+.+
T Consensus 219 ~~~~~~l~~---~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 219 TPEIQDLQR---RLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCCHHHHHH---HHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 232222222 2222 24 444445566677777888887777665543
No 315
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=78.91 E-value=19 Score=24.96 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=29.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH
Q 039342 45 AYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV 93 (248)
Q Consensus 45 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 93 (248)
+.+.+++.|++++.. =..++..+...++.-.|.++++++++.+...+.
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~isl 55 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISL 55 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCH
Confidence 445556667666653 245666666666667777777777766544443
No 316
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=78.86 E-value=5.7 Score=31.05 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 039342 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL 61 (248)
Q Consensus 26 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 61 (248)
||..|....+.||+++|+.++++.++.|+.--..||
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 446666666666666666666666666654433333
No 317
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.18 E-value=55 Score=29.91 Aligned_cols=228 Identities=12% Similarity=0.053 Sum_probs=111.6
Q ss_pred CchHHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHH-hcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNS-------DSFNAVIEAFR-QGGRFEEAIKAYVEMEKV----RCDPNERTLEAVLSVYC 69 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~-------~~y~~li~~~~-~~~~~~~a~~~~~~m~~~----~~~p~~~t~~~ll~~~~ 69 (248)
.++++|..+..+....-..|+. ..|+.+=.... ..|+++.|.++-+...+. -..+....+..+..+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence 4677888887776543222221 24555544333 357788888777766432 23345555666667777
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHhh---HHHHHH--HHHhcCCH--HHHHHHHHHHHHC-----CCC-chHHhHHHHhc
Q 039342 70 FAGLVDESKEQFQEIKSSGILPSVMC---YCMLLA--VYAKSNRW--DDAYGLLDEMHTN-----RIS-NIHQVTGQMIK 136 (248)
Q Consensus 70 ~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~--~~~~~~~~--~~a~~~~~~m~~~-----~~~-~~~~~~~~~l~ 136 (248)
-.|+++.|..+..+..+..-.-+... |..+.. .+-..|+. .+.+..|...... ++. +-..+...++.
T Consensus 509 ~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~ 588 (894)
T COG2909 509 IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLR 588 (894)
T ss_pred HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Confidence 78888888888777654322223322 222222 23345532 2223333333221 111 22223333343
Q ss_pred ccccccchHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCchHHHHHHHHHHHHCCCCCCcc-hhhhHHhhhhhhc
Q 039342 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYN--ALLEALWCLGLRERAARVLDEATKRGLFPELF-RHNKLVWSVDVHR 213 (248)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~ 213 (248)
++.+-.+...++..-++.-......|-..-+. .+.+.....|+.++|...++++......++.. -|.+.+...-..-
T Consensus 589 ~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~l 668 (894)
T COG2909 589 AWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLIL 668 (894)
T ss_pred HHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHH
Confidence 33332222222222222222223333223223 66777888999999999999987643333211 1222221111112
Q ss_pred cccchHHHHHHHHHHH
Q 039342 214 MWEGGAYTAISVWLNK 229 (248)
Q Consensus 214 ~~~~g~~~~~~~~~~~ 229 (248)
-..+|+.+.+..++.+
T Consensus 669 wl~qg~~~~a~~~l~~ 684 (894)
T COG2909 669 WLAQGDKELAAEWLLK 684 (894)
T ss_pred hcccCCHHHHHHHHHh
Confidence 2345666666555544
No 318
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=77.10 E-value=24 Score=25.31 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=51.6
Q ss_pred HHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHH-H
Q 039342 77 SKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK-L 155 (248)
Q Consensus 77 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-m 155 (248)
..+++..+.+.|..-|..--.+.+..-.+.| ..-..+..++.+.|+ +..+....+.. .......+.|..++.. +
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~-~~~~~~~~~a~~~~~kk~ 128 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALEL-IDEEDEQERARKVLRKKF 128 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhc-cchHHHHHHHHHHHHHHh
Confidence 4455555555555545444445555555555 444566666666663 33444444443 2222223333333332 3
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcC-chHHHHHHHHHH
Q 039342 156 NCEGYGLGMRFYNALLEALWCLG-LRERAARVLDEA 190 (248)
Q Consensus 156 ~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m 190 (248)
...+..|+..-..-+.+.+.+.| .++.+..++..+
T Consensus 129 ~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 129 KRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred CccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 33334455444455555555555 344444444443
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.01 E-value=6.7 Score=18.79 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~ 85 (248)
+|..+-..|...|++++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555666555555544
No 320
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=76.94 E-value=37 Score=27.27 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC---CCCcCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCc-hHHh
Q 039342 62 EAVLSVYCFAGLVDESKEQFQEIKSS---GILPSVMCYC--MLLAVYAKSNRWDDAYGLLDEMHT-----NRISN-IHQV 130 (248)
Q Consensus 62 ~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~-~~~~ 130 (248)
..++...-+.++.++|.+.++++.+. --.|+.+.|. .+...+...|+.+++.+++++..+ .+++| -...
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 45556666777899999999888753 2245666554 455566678899999999988877 67777 3455
Q ss_pred HHHHhcccccccchH
Q 039342 131 TGQMIKGEFDDESNW 145 (248)
Q Consensus 131 ~~~~l~~~~~~~~~~ 145 (248)
|+.+-..++...|++
T Consensus 159 fY~lssqYyk~~~d~ 173 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDF 173 (380)
T ss_pred HHHHHHHHHHHHHhH
Confidence 555555555554443
No 321
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.93 E-value=6.6 Score=18.71 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 166 FYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 166 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
.+..+-..+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677788888999999998888664
No 322
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=76.92 E-value=41 Score=27.85 Aligned_cols=162 Identities=12% Similarity=0.022 Sum_probs=0.0
Q ss_pred CCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCchHHhH
Q 039342 55 DPNERTLEAV-LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYA--KSNRWDDAYGLLDEMHTNRISNIHQVT 131 (248)
Q Consensus 55 ~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~ 131 (248)
+|.-.+|..+ ..++.-.|+.++|.++--...+.. ....+...+++.+ -.++.+.|...|++-...+ |+....
T Consensus 165 ~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~s 239 (486)
T KOG0550|consen 165 EPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKS 239 (486)
T ss_pred CchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhH
Q ss_pred HHHhccc------------ccccchHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCC
Q 039342 132 GQMIKGE------------FDDESNWQMVEYVFDKLNCE---GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLF 196 (248)
Q Consensus 132 ~~~l~~~------------~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 196 (248)
...-... .-+.|.+..|.+.|.+-... ...|+...|...-.+..+.|+.++|..--++..+-.
T Consensus 240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-- 317 (486)
T KOG0550|consen 240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-- 317 (486)
T ss_pred HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--
Q ss_pred CCcchhhhHHhhhhhhccccch--HHHHHHHHHHH
Q 039342 197 PELFRHNKLVWSVDVHRMWEGG--AYTAISVWLNK 229 (248)
Q Consensus 197 p~~~t~~~li~~~~~~~~~~~g--~~~~~~~~~~~ 229 (248)
...|++++.++-+..- +++++.+-++.
T Consensus 318 ------~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 318 ------SSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 323
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.72 E-value=13 Score=24.00 Aligned_cols=50 Identities=24% Similarity=0.314 Sum_probs=23.9
Q ss_pred HHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHH
Q 039342 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMY 231 (248)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~ 231 (248)
++.+.++|+++.|..+.+.+ ..||...+-.|- -++.|..++.+..+..|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc-------e~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC-------EWRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHH-------HHhhccHHHHHHHHHHHH
Confidence 34455566666666555443 245544443332 234454444444444443
No 324
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=76.63 E-value=27 Score=29.25 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----------cCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhc
Q 039342 38 RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF-----------AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106 (248)
Q Consensus 38 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~-----------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 106 (248)
|+++|.++.+.+ |....|...+.-..+ .+.+++..++++.+.+.| .+| ...+-|++|.|.
T Consensus 29 d~~eav~y~k~~------p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~ 99 (480)
T TIGR01503 29 DLQDAVDYHKSI------PAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQ 99 (480)
T ss_pred CHHHHHHHHHhC------CccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc-CCC--ccceeeeccccc
Confidence 567777766654 333334444433322 335888888999988875 123 445568999999
Q ss_pred CCHHHHHHHHHHHHHC
Q 039342 107 NRWDDAYGLLDEMHTN 122 (248)
Q Consensus 107 ~~~~~a~~~~~~m~~~ 122 (248)
+++++|...+++-.+.
T Consensus 100 n~y~~A~~~l~~s~~~ 115 (480)
T TIGR01503 100 NRYDEAAVGIKESIKA 115 (480)
T ss_pred ccHHHHHHHHHhhhhc
Confidence 9999999999887664
No 325
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=76.28 E-value=8.9 Score=30.04 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=28.2
Q ss_pred CcCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHH
Q 039342 90 LPSVMC-YCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134 (248)
Q Consensus 90 ~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 134 (248)
.|+..+ |+.-|..-.+.||+++|+.+++|....|+.--..+|-..
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 344443 557777777777777777777777777665555554433
No 326
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.81 E-value=37 Score=26.74 Aligned_cols=107 Identities=7% Similarity=0.026 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHH----HhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhH
Q 039342 56 PNERTLEAVLSVY----CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131 (248)
Q Consensus 56 p~~~t~~~ll~~~----~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 131 (248)
.+...+.-++..| .....+.-|...=+.+.+. -..+++..-+.|..+|.+.+|.++-++...-. |-..+.
T Consensus 242 ltide~kelv~~ykgdyl~e~~y~Waedererle~l----y~kllgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~ 315 (361)
T COG3947 242 LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQL----YMKLLGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQD 315 (361)
T ss_pred cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHH----HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHH
Confidence 5666777788776 2223333343333333321 23467777889999999999999999887654 666666
Q ss_pred HHHhcccccccchHHHHHHHHHHHH-----hcCCCCCHHHHH
Q 039342 132 GQMIKGEFDDESNWQMVEYVFDKLN-----CEGYGLGMRFYN 168 (248)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~m~-----~~~~~p~~~~~~ 168 (248)
+..+...+...|+--.+..-++.+. +.|+..|-..++
T Consensus 316 nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 316 NKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 6655555666665444444444432 347777766655
No 327
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=75.05 E-value=27 Score=24.87 Aligned_cols=61 Identities=7% Similarity=-0.025 Sum_probs=36.8
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHH
Q 039342 49 MEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110 (248)
Q Consensus 49 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 110 (248)
+++.|++++..=. .++......+..-.|.++++.+.+.+..++..|----|..+...|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4556766665433 445555555566677777777777665556555445566666666544
No 328
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=75.04 E-value=27 Score=24.88 Aligned_cols=188 Identities=13% Similarity=0.026 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 4 YKECQAILSRMSESGVA-RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 4 ~~~a~~~~~~m~~~g~~-~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
...+...+......... .....+......+...++...+...+...... ........+......+...++...+.+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444555554443322 13577777777788888888877777776542 33455566666677777777788888888
Q ss_pred HHHHHCCCCcCHhhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CchHHhHHHHhcccccccchHHHHHHHHHHHHhc
Q 039342 82 QEIKSSGILPSVMCYCMLLA-VYAKSNRWDDAYGLLDEMHTNRI--SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
.........+ ......... .+...|+++.|...+.+...... ......+...... +...++.+.+...+......
T Consensus 119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 119 EKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL-LEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH-HHHhcCHHHHHHHHHHHHhh
Confidence 7777643332 122222222 67778888888888887744221 0111222222211 44556667777777776655
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 159 GYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 159 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
........+..+-..+...+.++.+...+......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 32213566777777777777788888887776653
No 329
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=75.01 E-value=25 Score=24.36 Aligned_cols=65 Identities=22% Similarity=0.218 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 039342 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73 (248)
Q Consensus 8 ~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 73 (248)
.++...+++.|++++.. =..++..+.+.+++-.|.++++++++.+...+..|-=..|+.+...|-
T Consensus 6 ~~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 6 EDAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34566778889877654 345788888888889999999999998877766665555566655554
No 330
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=74.97 E-value=39 Score=26.66 Aligned_cols=86 Identities=20% Similarity=-0.028 Sum_probs=51.5
Q ss_pred hcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHH
Q 039342 35 QGGRFEEAIKAYVEMEKVRC----DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110 (248)
Q Consensus 35 ~~~~~~~a~~~~~~m~~~~~----~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 110 (248)
...-.+.|.+.|+.....+. .++...-..++....+.|..+.-..+++..... ++......++.+++...+.+
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHH
Confidence 34446677777777765421 345555566677777777766655555555543 35667777777777777777
Q ss_pred HHHHHHHHHHHCC
Q 039342 111 DAYGLLDEMHTNR 123 (248)
Q Consensus 111 ~a~~~~~~m~~~~ 123 (248)
...++++.....+
T Consensus 219 ~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 219 LLKRLLDLLLSND 231 (324)
T ss_dssp HHHHHHHHHHCTS
T ss_pred HHHHHHHHHcCCc
Confidence 7777777777654
No 331
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.48 E-value=40 Score=26.52 Aligned_cols=134 Identities=10% Similarity=0.078 Sum_probs=78.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCchH
Q 039342 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS-SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----NRISNIH 128 (248)
Q Consensus 54 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~ 128 (248)
++.|..-+|.++.--- .++++-.+-.++..+ .|-.--...+..+-.-|+.-++.+.+.+..++..+ .|.+.|.
T Consensus 77 ikfD~~~~n~l~kkne--eki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 77 IKFDRGRMNTLLKKNE--EKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred eehhhHHHHHHHHhhH--HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh
Confidence 5666666777665211 112222222333332 23334567888889999999999988888776543 4555555
Q ss_pred HhHHHHhcccccccchHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG----MRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
.....-+.-.+....-.++..+..+.|.+.|...+ -.+|--+... ...++.+|-.++-+..
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m--~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKM--MRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHH--HHHhhHHHHHHHHHHh
Confidence 54444444445666667777788888888876543 2344433322 2345777777776654
No 332
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.12 E-value=13 Score=21.38 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 039342 96 YCMLLAVYAKSNRWDDAYGLLDEM 119 (248)
Q Consensus 96 ~~~li~~~~~~~~~~~a~~~~~~m 119 (248)
--.+|.+|...|++++|.+.++++
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334555555555555555555544
No 333
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=72.94 E-value=13 Score=21.39 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=14.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 039342 63 AVLSVYCFAGLVDESKEQFQEIKS 86 (248)
Q Consensus 63 ~ll~~~~~~g~~~~a~~~~~~m~~ 86 (248)
.+|.+|...|++++|.++.+++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456666666666666666666543
No 334
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.24 E-value=14 Score=22.54 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=33.6
Q ss_pred CchHHHHHHHHHHHHcCCCC-C-HHhHHHHHHHHHhcCCHHHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVAR-N-SDSFNAVIEAFRQGGRFEEAIKAY 46 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~-~-~~~y~~li~~~~~~~~~~~a~~~~ 46 (248)
++-++|+..|....+.-..| + -.++..++.+|+..|++.+++++-
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999877643332 2 347888999999999999887653
No 335
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.88 E-value=5.6 Score=27.02 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=18.5
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 71 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
.|.-..|-.+|+.|.++|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3445566667777777776665 45555554
No 336
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=71.72 E-value=25 Score=22.94 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 039342 61 LEAVLSVYCFAGLVDESKEQFQEIKS 86 (248)
Q Consensus 61 ~~~ll~~~~~~g~~~~a~~~~~~m~~ 86 (248)
|..++..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66677777777777777777766655
No 337
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=71.38 E-value=17 Score=20.94 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=22.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HhcCChhHHHHH
Q 039342 34 RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY-----CFAGLVDESKEQ 80 (248)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~-----~~~g~~~~a~~~ 80 (248)
.+.|++-+|.++++.+-...-.|....+..+|... .+.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34566666666666664322223444444444433 244555555444
No 338
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=71.05 E-value=53 Score=26.43 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 63 AVLSVYCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 63 ~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
-+.-+..+.|+..+|.+.|+.+.+. .+..-......+|.++....-+.++..++-+--+..
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4444556788999999999887643 221112345567888777666666666655544333
No 339
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=70.99 E-value=13 Score=27.18 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC--------------CcCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039342 62 EAVLSVYCFAGLVDESKEQFQEIKSSGI--------------LPSVMCYCMLLAVYAKSNRWDDAYGLLDE 118 (248)
Q Consensus 62 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~--------------~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 118 (248)
-+++..|.+.-+|.+.+++++.|.+..+ .+--..-|.-...|.+.|.+|.|+.++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4566778888899999999998876432 23345677778888899999999999883
No 340
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.70 E-value=33 Score=23.94 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=61.3
Q ss_pred HhHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHH
Q 039342 24 DSFNAVIEAF---RQGGRFEEAIKAYVEMEKVRCDPNERTLEA-VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99 (248)
Q Consensus 24 ~~y~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 99 (248)
..-+.||... ...++++++..+++.|.-. .|+..-... -...+...|+|++|..+|+++.+.+. ...|..-
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~---~~p~~kA 82 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG---APPYGKA 82 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC---CchHHHH
Confidence 3444444433 3478999999999998653 444432222 23456788999999999999987642 2244444
Q ss_pred HHHHHhcCCHHHHHHHH-HHHHHCCCCchHHhHHHHhcc
Q 039342 100 LAVYAKSNRWDDAYGLL-DEMHTNRISNIHQVTGQMIKG 137 (248)
Q Consensus 100 i~~~~~~~~~~~a~~~~-~~m~~~~~~~~~~~~~~~l~~ 137 (248)
+.++|-.-.-|-.++.+ .++.+.+-.|+....-..+.+
T Consensus 83 L~A~CL~al~Dp~Wr~~A~~~le~~~~~~a~~Lv~al~g 121 (153)
T TIGR02561 83 LLALCLNAKGDAEWHVHADEVLARDADADAVALVRALLG 121 (153)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCHhHHHHHHHHhc
Confidence 44444333222222222 334445555555544444444
No 341
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=70.33 E-value=72 Score=28.42 Aligned_cols=78 Identities=9% Similarity=0.062 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhHHH---HHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 28 AVIEAFRQGGRFEEAIKAYVEMEKV--RCDPNERTLEAVLSVYCFAGLVDESK---EQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 28 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~---~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
+|+.+|..+|++-.+.++++.+... |-+.-...||..|+...+.|.++-.. ..-+.+.+..+.-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 8999999999999999999998654 33444567888899999999754321 111222334455688888888877
Q ss_pred HHh
Q 039342 103 YAK 105 (248)
Q Consensus 103 ~~~ 105 (248)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 554
No 342
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.31 E-value=24 Score=22.06 Aligned_cols=64 Identities=9% Similarity=0.014 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHH
Q 039342 43 IKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112 (248)
Q Consensus 43 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 112 (248)
.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. .| +..|+.++.++-..|.-+-|
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 355566655554 333344444433344566666666666666 42 23566666666666554444
No 343
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=69.70 E-value=9.1 Score=23.45 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=11.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCH
Q 039342 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSV 93 (248)
Q Consensus 64 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 93 (248)
.+...+..|+. ++++.+.+.|..++.
T Consensus 29 ~l~~A~~~~~~----~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 29 ALHYAAENGNL----EIVKLLLENGADINS 54 (89)
T ss_dssp HHHHHHHTTTH----HHHHHHHHTTTCTT-
T ss_pred HHHHHHHcCCH----HHHHHHHHhcccccc
Confidence 33344444553 344444445544433
No 344
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=69.17 E-value=38 Score=24.07 Aligned_cols=187 Identities=14% Similarity=0.080 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChhHHHHH
Q 039342 3 LYKECQAILSRMSES-GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS-VYCFAGLVDESKEQ 80 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~-g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~g~~~~a~~~ 80 (248)
++..+...+...... ........+......+...++...+.+.+.........+. ........ .+...|+++.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~ 152 (291)
T COG0457 74 RLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALEL 152 (291)
T ss_pred cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444444321 1223445555555666666666667666666655433331 12222222 56677777777777
Q ss_pred HHHHHHCCC--CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc
Q 039342 81 FQEIKSSGI--LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 81 ~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
+++...... ......+......+...++.+.+...+.+............+..+-.. +...+.++.+...+......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 153 YEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL-YLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHH-HHHcccHHHHHHHHHHHHhh
Confidence 776644211 112333334444455666777777777766554322112222222222 33444556666665555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 159 GYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 159 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
... ....+..+...+...+..+.+...+.....
T Consensus 232 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 232 DPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred Ccc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 122333333333355556666666665544
No 345
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=68.95 E-value=53 Score=26.11 Aligned_cols=57 Identities=9% Similarity=0.083 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHH
Q 039342 43 IKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYA 104 (248)
Q Consensus 43 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 104 (248)
.++|+.|+..++.|.-..|..+.-.+.+.=.+..+..+|+.+... ..-|..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 345666666666666666666666666666666666666666542 222555555554
No 346
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.85 E-value=29 Score=22.61 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 166 FYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 166 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
-|..++.-|...|..++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 389999999999999999999999877
No 347
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.49 E-value=26 Score=21.87 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039342 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 7 a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 79 (248)
+.++++...+.|+ -+....+.+-.+--..|+.+.|.++++.+. .| |+ .|...++++...|.-+-|.+
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhhhc
Confidence 4567777877776 455566666555557799999999999998 54 44 58889999999888776654
No 348
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=67.95 E-value=44 Score=25.50 Aligned_cols=60 Identities=15% Similarity=0.031 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH----CCC-CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 61 LEAVLSVYCFAGLVDESKEQFQEIKS----SGI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120 (248)
Q Consensus 61 ~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 120 (248)
.-.+-.-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+--+|.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34566778888999999988888742 343 3466677778888888888888777665553
No 349
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=67.62 E-value=61 Score=25.78 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCchHHHH
Q 039342 164 MRFYNALLEALWCLGLRERAA 184 (248)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~a~ 184 (248)
..+|.-|+.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 456888999999999877544
No 350
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=67.62 E-value=42 Score=23.92 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 039342 36 GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74 (248)
Q Consensus 36 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 74 (248)
.++.-.|.++++.+.+.+..++..|---.|..+.+.|-+
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 334444555555554444444444433334444444433
No 351
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=67.42 E-value=31 Score=22.35 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 039342 98 MLLAVYAKSNRWDDAYGLLDEM 119 (248)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~m 119 (248)
.+|..|...++.++|..-+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555555555555555554
No 352
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=65.50 E-value=39 Score=22.74 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHH
Q 039342 76 ESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLD 117 (248)
Q Consensus 76 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~ 117 (248)
.+.++|+.|...|+-. .+.-|..--..+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555443332 23344444455555555555555554
No 353
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.33 E-value=70 Score=25.67 Aligned_cols=135 Identities=11% Similarity=0.002 Sum_probs=73.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCch
Q 039342 53 RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----NRISNI 127 (248)
Q Consensus 53 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~ 127 (248)
.++.|..-++.+..+- ..++++-.+..+...+. |-.--...+-..-.-||+-|+.+.|++.+++-.+ .|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~n--eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKAN--EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHhh--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 3455655555554432 12233333333343332 3222345666677788999999999888877644 355555
Q ss_pred HHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 128 HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG----MRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
...+..-+.-.+....-..+-.+-.+.+.+.|-..+ ..+|..+-.. ...++.+|-.+|-+..
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~m--svR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCM--SVRNFKEAADLFLDSV 208 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHH--HHHhHHHHHHHHHHHc
Confidence 555544444444554444555555555666655433 3445544333 3446788888877654
No 354
>PRK11906 transcriptional regulator; Provisional
Probab=64.34 E-value=88 Score=26.42 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=50.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-HhhHHHHHHHHHhcCCHHHHHH
Q 039342 36 GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYG 114 (248)
Q Consensus 36 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~ 114 (248)
..+..+|.++-+...+.+ +-|......+-.+..-.++++.|...|++.... .|| ..+|-..-..+.-+|+.++|.+
T Consensus 317 ~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 317 ELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred hHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 344566666666665554 456666666666666667788888888877664 343 3344444444455677888888
Q ss_pred HHHHH
Q 039342 115 LLDEM 119 (248)
Q Consensus 115 ~~~~m 119 (248)
.+++-
T Consensus 394 ~i~~a 398 (458)
T PRK11906 394 CIDKS 398 (458)
T ss_pred HHHHH
Confidence 88773
No 355
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=63.88 E-value=1.4e+02 Score=28.58 Aligned_cols=143 Identities=13% Similarity=0.210 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhcC--CHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHHCCCC
Q 039342 25 SFNAVIEAFRQGG--RFEEAIKAYVEMEKVR--------CDPNERTLEAVLSVYC----FAGLVDESKEQFQEIKSSGIL 90 (248)
Q Consensus 25 ~y~~li~~~~~~~--~~~~a~~~~~~m~~~~--------~~p~~~t~~~ll~~~~----~~g~~~~a~~~~~~m~~~~~~ 90 (248)
-|...+......| -++++..+.+ ++| ++|+...+..+..+|+ +..++++|--.|+..-+
T Consensus 895 ry~~AL~hLs~~~~~~~~e~~n~I~---kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---- 967 (1265)
T KOG1920|consen 895 RYEDALSHLSECGETYFPECKNYIK---KHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---- 967 (1265)
T ss_pred HHHHHHHHHHHcCccccHHHHHHHH---hcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----
Confidence 4556666666665 4455544433 233 4678877777665554 56677777777655422
Q ss_pred cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 039342 91 PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170 (248)
Q Consensus 91 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 170 (248)
..--+.+|-.+|+|.+|+.+..++....- --..+-..+... +...+..-+|-++..+-... ..-.
T Consensus 968 -----lekAl~a~~~~~dWr~~l~~a~ql~~~~d-e~~~~a~~L~s~-L~e~~kh~eAa~il~e~~sd--------~~~a 1032 (1265)
T KOG1920|consen 968 -----LEKALKAYKECGDWREALSLAAQLSEGKD-ELVILAEELVSR-LVEQRKHYEAAKILLEYLSD--------PEEA 1032 (1265)
T ss_pred -----HHHHHHHHHHhccHHHHHHHHHhhcCCHH-HHHHHHHHHHHH-HHHcccchhHHHHHHHHhcC--------HHHH
Confidence 12346778888888888888887742211 011111223333 33333333333333332221 2334
Q ss_pred HHHHHhcCchHHHHHHHHH
Q 039342 171 LEALWCLGLRERAARVLDE 189 (248)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~ 189 (248)
+..|++...|++|..+-..
T Consensus 1033 v~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1033 VALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHhhHhHHHHHHHHHHh
Confidence 5556666666666665543
No 356
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=63.04 E-value=21 Score=29.64 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=30.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039342 36 GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 36 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 85 (248)
.+.+++-.++++.+.+.|. +|. ..+-++.|.+.++++.|.+..++-.
T Consensus 24 ~~~~~e~~~~l~~l~~~g~-~dv--l~ltiDsytr~~~~~~a~~~l~~~~ 70 (428)
T cd00245 24 FPLLEEHIELLRTLQEEGA-ADV--LPLTIDSYTRVNDYEEAEEGLEESI 70 (428)
T ss_pred CCCHHHHHHHHHHHHhcCC-CCe--eccccccchhhhhhHHHHHHHHhhh
Confidence 3456777777777777653 443 3345777777777777777776654
No 357
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=62.87 E-value=40 Score=22.05 Aligned_cols=37 Identities=24% Similarity=0.048 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHH
Q 039342 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERA 183 (248)
Q Consensus 146 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 183 (248)
++|..+.+.+...+-. ...+--+-+..+.++|+++.|
T Consensus 23 ~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 23 QEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp HHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH
Confidence 4555555555555432 222223334455566666666
No 358
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=62.26 E-value=75 Score=24.97 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=61.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhccccccc
Q 039342 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDE 142 (248)
Q Consensus 63 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~ 142 (248)
.++..+.+.++.....+.++.++ +...-..-|..+...|++.+|++++.+..+.--. -.-+. .+.. -.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~--l~~~~-c~~~---L~ 170 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEE--LKGYS-CVRH---LS 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--cccch-HHHH---Hh
Confidence 34455555556656666665554 3445556777788999999999999887653100 00000 0000 01
Q ss_pred chHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCchHHHH
Q 039342 143 SNWQMVEYVFDKLNCE-----GYGLGMRFYNALLEALWCLGLRERAA 184 (248)
Q Consensus 143 ~~~~~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~ 184 (248)
..++......+.+.+. -..-|+..|..++.+|.-.|+...+.
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 1222222222222211 12468889999999999998765544
No 359
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=61.72 E-value=29 Score=22.67 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=19.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC
Q 039342 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108 (248)
Q Consensus 65 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 108 (248)
+......+..-.|.++++.+.+.+..++..|---.++.+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33333334444455555555544443444443344444444443
No 360
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.58 E-value=78 Score=32.49 Aligned_cols=110 Identities=10% Similarity=0.112 Sum_probs=57.6
Q ss_pred HHHHHhcCChhHHHHHHHH----HHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhccccc
Q 039342 65 LSVYCFAGLVDESKEQFQE----IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140 (248)
Q Consensus 65 l~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~ 140 (248)
-.+-.+++.+.+|...++. .++. .....-|..+...|+.-+++|+...+...- ..+...+..++. ..
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-----~a~~sl~~qil~--~e 1460 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARR-----FADPSLYQQILE--HE 1460 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHh-----hcCccHHHHHHH--HH
Confidence 3455666777777777766 2222 112334445555777777777766666531 122233333433 34
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHH
Q 039342 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184 (248)
Q Consensus 141 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 184 (248)
..|+|+.|...|+.+.+.+.. ...+++-++......|.++.+.
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i 1503 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEI 1503 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHH
Confidence 556677777777776655321 2444554554444444444433
No 361
>PRK09462 fur ferric uptake regulator; Provisional
Probab=61.54 E-value=51 Score=22.79 Aligned_cols=60 Identities=8% Similarity=0.045 Sum_probs=29.6
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCH
Q 039342 49 MEKVRCDPNERTLEAVLSVYCFA-GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRW 109 (248)
Q Consensus 49 m~~~~~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 109 (248)
+++.|++++..= ..++..+... +..-.|.++++.+.+.+...+..|----|..+...|-+
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 445555555432 2334444432 34556666666666555444444444444555555543
No 362
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.32 E-value=80 Score=24.94 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=28.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHhcCChhHHHHH
Q 039342 30 IEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE-------AVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 30 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~-------~ll~~~~~~g~~~~a~~~ 80 (248)
-+...+.+++++|...+.+....|+..|..+.| .+-..|.+.|+...-.+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344556667777777777777666666554443 233444555554444333
No 363
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.11 E-value=16 Score=16.87 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=16.3
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIE 31 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~ 31 (248)
|+.+.|.++|+++...-. -+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHH
Confidence 466777777777664321 34555554443
No 364
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=60.51 E-value=1.2e+02 Score=26.57 Aligned_cols=117 Identities=6% Similarity=0.033 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-HhHHHH
Q 039342 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH-QVTGQM 134 (248)
Q Consensus 56 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~ 134 (248)
+....|..++..+... +.+...++++++.. . + ...+..++++....|-.....-+.+.+....+.+.. ......
T Consensus 308 ~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~ 382 (574)
T smart00638 308 PAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAV 382 (574)
T ss_pred chHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4556677777766554 55666777777754 1 1 668888888888888877777777777666655422 222111
Q ss_pred hcccccccchHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcC
Q 039342 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGM-------RFYNALLEALWCLG 178 (248)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g 178 (248)
+.. .......+....+++.+......+.. .+|.++++-+|...
T Consensus 383 ~~~-~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~ 432 (574)
T smart00638 383 LPH-TARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT 432 (574)
T ss_pred HHH-hhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 112 33334445555555555545555554 34555555445443
No 365
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.99 E-value=1e+02 Score=25.69 Aligned_cols=142 Identities=11% Similarity=0.002 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHC---CC-CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHH
Q 039342 75 DESKEQFQEIKSS---GI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150 (248)
Q Consensus 75 ~~a~~~~~~m~~~---~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (248)
++...+++..... |+ ..+......++... .|+...++.+++.....+...+......++.........
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~------ 225 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDK------ 225 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCC------
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc---CchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHH
Q 039342 151 VFDKLNCEGYGLGMRFYNALLEALWCL---GLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227 (248)
Q Consensus 151 ~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~ 227 (248)
....+..+++++.+. ++.+.|..++..|.+.|..|....-..++.+.---|++.-.....+...+
T Consensus 226 ------------~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~ 293 (413)
T PRK13342 226 ------------DGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAA 293 (413)
T ss_pred ------------CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Q ss_pred HHHHHHHHc
Q 039342 228 NKMYEMFMM 236 (248)
Q Consensus 228 ~~m~~~~~~ 236 (248)
+.....|++
T Consensus 294 ~~~~~~g~p 302 (413)
T PRK13342 294 DAVERIGMP 302 (413)
T ss_pred HHHHHhCCc
No 366
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=59.48 E-value=16 Score=17.95 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHHcCCCCCHHhHHH
Q 039342 3 LYKECQAILSRMSESGVARNSDSFNA 28 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~g~~~~~~~y~~ 28 (248)
.++.|..+|++.... .|++.+|-.
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHH
Confidence 468888888888763 477776653
No 367
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=59.36 E-value=46 Score=21.53 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=9.8
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 039342 64 VLSVYCFAGLVDESKEQFQEI 84 (248)
Q Consensus 64 ll~~~~~~g~~~~a~~~~~~m 84 (248)
+|..|...|+.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444444445555555555443
No 368
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=58.99 E-value=40 Score=25.11 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHHHCCCCc-CHhhHHHHHH
Q 039342 39 FEEAIKAYVEMEKVRCD-------PNERTLEAVLSVYCFAGL---------VDESKEQFQEIKSSGILP-SVMCYCMLLA 101 (248)
Q Consensus 39 ~~~a~~~~~~m~~~~~~-------p~~~t~~~ll~~~~~~g~---------~~~a~~~~~~m~~~~~~p-~~~~~~~li~ 101 (248)
.+.|..++..|--+.++ -...-|..+-.+|.+.|- .+...++++...+.|++- =++.|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 46677777777443322 233456667777777662 333444444444444432 2344555554
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 039342 102 VYAKSNRWDDAYGLLDEM 119 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m 119 (248)
--.-.-++++..+++..+
T Consensus 217 k~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIV 234 (236)
T ss_pred cccCCCCHHHHHHHHHHh
Confidence 444444455544444433
No 369
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.92 E-value=54 Score=22.25 Aligned_cols=48 Identities=17% Similarity=0.045 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 146 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
-+..+-++.+...++.|++......+++|-+.+++..|..+|+-++.+
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345556667777889999999999999999999999999999987754
No 370
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.57 E-value=48 Score=21.49 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=27.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 65 LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 65 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
++.+...|++++|..+.+.+ ..||...|-+|-.. +.|..+++..-+.+|..+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 34455566666666555444 24566655554332 4455555555555555544
No 371
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.48 E-value=92 Score=28.81 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=68.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHCCCCcCHhhHHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---CDPNERTLEAVLSVYCFAGLV--DESKEQFQEIKSSGILPSVMCYCM 98 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~t~~~ll~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~ 98 (248)
.-|..|+..|...|+.++|+++|.+..+.. -.--..-+-.++.-.-+.+.. +-+.++-++..+....-....+..
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 358899999999999999999999986632 111112233466666666554 666666666654322111112221
Q ss_pred ------------HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhc
Q 039342 99 ------------LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136 (248)
Q Consensus 99 ------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~ 136 (248)
-+-.|......+-+...++.+....-.++....+.++.
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ 634 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLK 634 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHH
Confidence 33445666777788888888876655555544444443
No 372
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=57.76 E-value=32 Score=30.00 Aligned_cols=170 Identities=14% Similarity=0.109 Sum_probs=48.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
+...|..-+..+...++.. ....+.+..+---.+...-.-++..|.+.|..+.+.++.+.+-..-+ ...-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 3445666666555544332 55566665544445666778888999999999999999887754422 3456777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchH
Q 039342 102 VYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRE 181 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 181 (248)
-+.++|+.+.+-.+-+.+.+............++.. ..... +....+.| ..+|.-+-+. ...|++.
T Consensus 447 ~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~-i~~~~-----------~~~~~L~f-la~yreF~~~-~~~~~~~ 512 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDN-IGSPM-----------LLSQRLSF-LAKYREFYEL-YDEGDFR 512 (566)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHH-hcchh-----------hhhhhhHH-HHHHHHHHHH-HhhhhHH
Confidence 888999988877777776654333322222222222 11000 11111111 1122222222 2236777
Q ss_pred HHHHHHHHHHHCCCCCCcchhhhHHhhh
Q 039342 182 RAARVLDEATKRGLFPELFRHNKLVWSV 209 (248)
Q Consensus 182 ~a~~~~~~m~~~g~~p~~~t~~~li~~~ 209 (248)
+|.+.+-.+....+.|...-...|....
T Consensus 513 ~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 513 EAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 7777777777777777665555554433
No 373
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=57.51 E-value=43 Score=21.81 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=24.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 039342 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 75 (248)
++..+...+..-.|.++++.+.+.+..++..|.--.|+.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444555556666666655555555555544555555555443
No 374
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=57.40 E-value=81 Score=23.78 Aligned_cols=96 Identities=15% Similarity=0.028 Sum_probs=43.2
Q ss_pred CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---hHHhHH--HHhcccccccchHHHHHHHHHHHHhcCCCCCH
Q 039342 90 LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN---IHQVTG--QMIKGEFDDESNWQMVEYVFDKLNCEGYGLGM 164 (248)
Q Consensus 90 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 164 (248)
.+...-+|.||--|.-...+.+|-..|.. +.++.| +..++. .-|+. ....|+.+.|.+....+...-+.-|.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~-~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRR-AIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHH-HHHhccHHHHHHHHHHhChHHHccch
Confidence 44555555555555554444444444443 334443 222222 22333 44556666666666655443333333
Q ss_pred HHHHHHHH----HHHhcCchHHHHHHHH
Q 039342 165 RFYNALLE----ALWCLGLRERAARVLD 188 (248)
Q Consensus 165 ~~~~~li~----~~~~~g~~~~a~~~~~ 188 (248)
..+-.+.. -..+.|..++|.++.+
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 23322222 1344555555555544
No 375
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=57.10 E-value=37 Score=19.81 Aligned_cols=49 Identities=10% Similarity=-0.025 Sum_probs=27.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 70 (248)
|....++-++..+++..-.+.++..+.+..++|. .+..+|---++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 5555666666666666666666666666666654 444555444444443
No 376
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=56.76 E-value=83 Score=23.72 Aligned_cols=99 Identities=10% Similarity=0.180 Sum_probs=61.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH
Q 039342 19 VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP---NERTL--EAVLSVYCFAGLVDESKEQFQEIKSSGILPSV 93 (248)
Q Consensus 19 ~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~--~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 93 (248)
+.+...-+|.|+--|.-...+.+|-+.|.. +.|++| |..++ ..-|......|+++.|.+..+++...-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 455666777776666655555555555543 456655 44444 35677889999999999999888654344444
Q ss_pred hhHHHHHH----HHHhcCCHHHHHHHHHHH
Q 039342 94 MCYCMLLA----VYAKSNRWDDAYGLLDEM 119 (248)
Q Consensus 94 ~~~~~li~----~~~~~~~~~~a~~~~~~m 119 (248)
..+--|.. -..|.|..++|+++.+.=
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22222221 235777788888877643
No 377
>PRK09462 fur ferric uptake regulator; Provisional
Probab=56.33 E-value=64 Score=22.29 Aligned_cols=16 Identities=13% Similarity=-0.076 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHCCC
Q 039342 109 WDDAYGLLDEMHTNRI 124 (248)
Q Consensus 109 ~~~a~~~~~~m~~~~~ 124 (248)
.-.|.++++.+.+.+.
T Consensus 33 h~sa~eI~~~l~~~~~ 48 (148)
T PRK09462 33 HVSAEDLYKRLIDMGE 48 (148)
T ss_pred CCCHHHHHHHHHhhCC
Confidence 4444555555544443
No 378
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=56.20 E-value=1.2e+02 Score=25.26 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=47.2
Q ss_pred CCchHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNS--DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~--~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 78 (248)
.|+.+.|.+-|+.|... |.. .-...|.-..-+.|+.+.|...-...-..- +--...+...+...+..|+|+.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 38889999999988752 221 223333334445566666665555543221 122345566677777777777777
Q ss_pred HHHHHHHH
Q 039342 79 EQFQEIKS 86 (248)
Q Consensus 79 ~~~~~m~~ 86 (248)
++.+.-++
T Consensus 209 kLvd~~~~ 216 (531)
T COG3898 209 KLVDAQRA 216 (531)
T ss_pred HHHHHHHH
Confidence 77665543
No 379
>PRK09857 putative transposase; Provisional
Probab=56.19 E-value=99 Score=24.40 Aligned_cols=63 Identities=5% Similarity=-0.002 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039342 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125 (248)
Q Consensus 62 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 125 (248)
..++.-..+.++.++..++++.+.+. .........++..-+...|.-++++++..+|...|+.
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444434445555555555554433 1222222233334443444444444444444444433
No 380
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=55.78 E-value=49 Score=28.89 Aligned_cols=30 Identities=17% Similarity=-0.057 Sum_probs=17.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039342 92 SVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121 (248)
Q Consensus 92 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 121 (248)
+...-.-++..|.+.|-.+.|.++.+.+-.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444555666666666666666666665533
No 381
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.69 E-value=1.4e+02 Score=26.04 Aligned_cols=150 Identities=17% Similarity=0.088 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHH-HHHHHH-HHhcCChhHHHHHHHHHHH-------CCCCcCHhhHHHHHHHHHhcC--
Q 039342 39 FEEAIKAYVEMEKVRCDPNERTL-EAVLSV-YCFAGLVDESKEQFQEIKS-------SGILPSVMCYCMLLAVYAKSN-- 107 (248)
Q Consensus 39 ~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~-~~~~g~~~~a~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~~-- 107 (248)
...+...++...+.|-.-..... .....+ ++...+++.|...|+...+ .| ......-+-..|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 46788888888776642222111 122333 5577799999999998866 45 3345666666666643
Q ss_pred ---CHHHHHHHHHHHHHCCCCchHHhHHHHhccccc-ccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCchH
Q 039342 108 ---RWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD-DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW--CLGLRE 181 (248)
Q Consensus 108 ---~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~ 181 (248)
+.+.|..++..--+.|.+ +....-..+.- .. ...+...|.++|...-..|..+ ..-+.+++.... -..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~-~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYLLGVLYE-TGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHH-cCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHH
Confidence 567799999988887753 33333222221 12 3467789999999888887653 222222222222 345778
Q ss_pred HHHHHHHHHHHCC
Q 039342 182 RAARVLDEATKRG 194 (248)
Q Consensus 182 ~a~~~~~~m~~~g 194 (248)
.|..++.+..+.|
T Consensus 382 ~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888888877
No 382
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.51 E-value=99 Score=24.22 Aligned_cols=213 Identities=9% Similarity=0.128 Sum_probs=123.5
Q ss_pred HcCCCCCHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CC
Q 039342 16 ESGVARNSDSFNAVIEAF-RQGGRFEEAIKAYVEMEKVRCDP---NERTLEAVLSVYCFAGLVDESKEQFQEIKS---SG 88 (248)
Q Consensus 16 ~~g~~~~~~~y~~li~~~-~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~---~~ 88 (248)
+++-.||+..=|-.-.+- .+..++++|+.-|.+..+..-.- --.....+|..+.+.|+++++.+.+.+|.. +.
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 445667776555443332 23457899999998876542122 223445678999999999999999988853 22
Q ss_pred CC--cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 89 IL--PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----NR-ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 89 ~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
+. -+..+.|++++--+...+.+....+++.-.+ .. -..+-.|-.. +...+-..+.+.....+++++....-.
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK-Lgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK-LGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch-HhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 22 2566788888888777777666665553321 11 1111111111 112244556677777888777653211
Q ss_pred -----------CCHHHHHHHHHHHHhcCchHHHHHHHHHHHH-CCCCCCcchhhhHHhhhhhhccccchHHHHHHH-HHH
Q 039342 162 -----------LGMRFYNALLEALWCLGLRERAARVLDEATK-RGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV-WLN 228 (248)
Q Consensus 162 -----------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~-~~~ 228 (248)
-=...|..=|+.|..+.+-.+-..++++... +.-.|.... --.|..|--+...+.|.+++|.. +|+
T Consensus 178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHH
Confidence 1245688888999998888888888886543 333343222 12233333334455666665543 444
Q ss_pred HH
Q 039342 229 KM 230 (248)
Q Consensus 229 ~m 230 (248)
.+
T Consensus 257 AF 258 (440)
T KOG1464|consen 257 AF 258 (440)
T ss_pred HH
Confidence 33
No 383
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=55.32 E-value=19 Score=15.84 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 039342 61 LEAVLSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 61 ~~~ll~~~~~~g~~~~a~~~~~~m~ 85 (248)
|..+-..+...|+++.|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445555555666666666665544
No 384
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=54.88 E-value=96 Score=23.87 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=48.3
Q ss_pred ccccchHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHH
Q 039342 139 FDDESNWQMVEYVFDKLNCE-GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206 (248)
Q Consensus 139 ~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 206 (248)
|....++...-.++..|... --.|+......+|+.|.+..+-.+|...+....-.++.- .|+..++
T Consensus 206 Cqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lrd--~tfs~~l 272 (293)
T KOG3036|consen 206 CQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLRD--GTFSLLL 272 (293)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhcc--chHHHHH
Confidence 44445677777778887765 446899999999999999999999999998765444333 3455555
No 385
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=54.39 E-value=1.5e+02 Score=25.78 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=15.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 039342 63 AVLSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 63 ~ll~~~~~~g~~~~a~~~~~~m~ 85 (248)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 45666777777777777776664
No 386
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=54.06 E-value=1.4e+02 Score=25.56 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=74.6
Q ss_pred CchHHH-HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 2 GLYKEC-QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 2 g~~~~a-~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
|++-.| .++|+-++...-.|+....-+. .+...|+++.+.+.+...... +.....+..+++....+.|+++.|.+.
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 444444 4556666654434554443333 345678899888887766432 345567888899999999999999999
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
-+-|....++ +......-...--..|-+|++...+++...-+
T Consensus 380 a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 380 AEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8888876554 33332222222234466788888888876544
No 387
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=53.54 E-value=37 Score=23.36 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=17.1
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 71 AGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 71 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
.|-+.+...++++|.++|+..+...|+.++.
T Consensus 122 kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 122 KGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred cCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 3555555555666555555555555555443
No 388
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=53.51 E-value=32 Score=22.71 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=22.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC
Q 039342 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108 (248)
Q Consensus 63 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 108 (248)
.++......+..-.|.++++.+.+.+...+..|.=--|+.+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 3444444544555555666665555544444443334444555443
No 389
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.43 E-value=1e+02 Score=23.78 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=60.6
Q ss_pred cCChhHHHHHHHHHHHC---C--CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCchH--HhHHHHhcccc
Q 039342 71 AGLVDESKEQFQEIKSS---G--ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT----NRISNIH--QVTGQMIKGEF 139 (248)
Q Consensus 71 ~g~~~~a~~~~~~m~~~---~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~--~~~~~~l~~~~ 139 (248)
..++++|.+++++-... + ..--...|..+-..+.+...+++|-..+.+-.. ..-.++. .+...++. +
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv--~ 200 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILV--Y 200 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHH--H
Confidence 44566666666654321 1 111123455555666666676665554443211 1111111 22222332 4
Q ss_pred cccchHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 039342 140 DDESNWQMVEYVFDKLNCEG---YGLGMRFYNALLEALWCLGLRERAARVLD 188 (248)
Q Consensus 140 ~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 188 (248)
-...++..++..++.--+.+ -+-+..+...||.+|- .|+.+.+.++..
T Consensus 201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 45567888998888855542 2335667777777775 567777766654
No 390
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=53.37 E-value=42 Score=19.32 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=31.9
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-----hcCCHHHHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFR-----QGGRFEEAIKAY 46 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~-----~~~~~~~a~~~~ 46 (248)
.|++=+|.++++.+-..-..+....|..+|...+ +.|+...|..++
T Consensus 12 ~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 12 AGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp TT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred CCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 4788899999999975444456677877777644 467777777654
No 391
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=53.19 E-value=15 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=15.5
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFN 27 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~ 27 (248)
.|+..+|.++++.++..|+.|....|.
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 366677777777777777666555443
No 392
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=53.01 E-value=28 Score=28.81 Aligned_cols=25 Identities=8% Similarity=0.013 Sum_probs=11.6
Q ss_pred hccccchHHHH---HHHHHHHHHHHHHc
Q 039342 212 HRMWEGGAYTA---ISVWLNKMYEMFMM 236 (248)
Q Consensus 212 ~~~~~~g~~~~---~~~~~~~m~~~~~~ 236 (248)
-+|.++|+..+ +.+.++++-+.-+.
T Consensus 209 v~Y~Q~gn~~QDiaAi~aLr~L~~eyL~ 236 (441)
T PF06368_consen 209 VGYAQQGNLIQDIAAIRALRELAAEYLP 236 (441)
T ss_dssp EEEE--S-HHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCChHHHHHHHHHHHHHHHHHHH
Confidence 35666664433 44556665555444
No 393
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=52.90 E-value=64 Score=30.20 Aligned_cols=59 Identities=8% Similarity=0.013 Sum_probs=49.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCC
Q 039342 105 KSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG 163 (248)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 163 (248)
....+.+++.+|+.|...|+.+....++......+.+.+.|+.|..+|..-.+....|-
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~ 148 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPL 148 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 55668889999999999999888888888777778888889999999888877777773
No 394
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=52.39 E-value=56 Score=20.39 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=33.1
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039342 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 121 (248)
++|+--...|+..|..+|..+++...-+=-.+...++++.|-.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777778888888888888877777777777777777743
No 395
>PHA02989 ankyrin repeat protein; Provisional
Probab=52.20 E-value=1.5e+02 Score=25.30 Aligned_cols=110 Identities=11% Similarity=0.079 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCCCCHHh--HHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCh--hHHHHHHH
Q 039342 9 AILSRMSESGVARNSDS--FNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERTL-EAVLSVYCFAGLV--DESKEQFQ 82 (248)
Q Consensus 9 ~~~~~m~~~g~~~~~~~--y~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~g~~--~~a~~~~~ 82 (248)
++.+.+.+.|..++... .+.+..+.+..+ +.+ +.+.+.+.|..+|...+ .+-+.++.+.+.. ....++.+
T Consensus 17 ~~v~~LL~~GadvN~~~~g~t~l~~~~~~~~~~~~----iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~ 92 (494)
T PHA02989 17 NALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIK----IVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVK 92 (494)
T ss_pred HHHHHHHHcCCCcccccCCCCHHHHHHhcCCCChH----HHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHH
Confidence 45566677788777652 233333333332 333 44555667776664321 2223344444432 34467788
Q ss_pred HHHHCCCCcCHhh---HHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCc
Q 039342 83 EIKSSGILPSVMC---YCMLLAVYAK--SNRWDDAYGLLDEMHTNRISN 126 (248)
Q Consensus 83 ~m~~~~~~p~~~~---~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~ 126 (248)
.+.+.|..++... .+.|..+... .+. .++.+-+.+.|..+
T Consensus 93 ~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~----~eiv~~Ll~~Gadi 137 (494)
T PHA02989 93 LLLKFGADINLKTFNGVSPIVCFIYNSNINN----CDMLRFLLSKGINV 137 (494)
T ss_pred HHHHCCCCCCCCCCCCCcHHHHHHHhcccCc----HHHHHHHHHCCCCc
Confidence 8888887665432 3334333221 133 34555566667655
No 396
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=52.03 E-value=64 Score=24.13 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHHcCC-------CCCHHhHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 039342 3 LYKECQAILSRMSESGV-------ARNSDSFNAVIEAFRQGG---------RFEEAIKAYVEMEKVRCD-PNERTLEAVL 65 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~g~-------~~~~~~y~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~-p~~~t~~~ll 65 (248)
..+.|..++..|--..+ -....-|-.+-.+|++.| +.+...++++...+.|++ .=++.|+++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 35778888888754432 125678999999999988 456778888888888864 3457888898
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 039342 66 SVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~m~ 85 (248)
+--.-.-++++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 87766778888888887765
No 397
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=51.94 E-value=1.5e+02 Score=25.35 Aligned_cols=80 Identities=9% Similarity=0.005 Sum_probs=42.0
Q ss_pred HHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 113 YGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 113 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
.+++.-++...-.|+.....+.|. ...|.++.+.+.+...... +.....+..++++...+.|+++.|..+-.-|..
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~~i~---~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRSVIF---SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLS 385 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHHHHH---HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 344444444444455555444442 3445556555555443322 223445556666666666666666666666655
Q ss_pred CCCC
Q 039342 193 RGLF 196 (248)
Q Consensus 193 ~g~~ 196 (248)
..++
T Consensus 386 ~eie 389 (831)
T PRK15180 386 NEIE 389 (831)
T ss_pred cccC
Confidence 4443
No 398
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=51.85 E-value=47 Score=21.86 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=18.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 039342 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 72 (248)
++..+...+.+-.|.++++.+.+.+...+..|.=--|+.+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444444445555555554444444443333333333333
No 399
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=51.75 E-value=1.1e+02 Score=23.54 Aligned_cols=91 Identities=16% Similarity=0.113 Sum_probs=55.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc-C-----------CCCCHHHHHHHHH
Q 039342 105 KSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE-G-----------YGLGMRFYNALLE 172 (248)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-----------~~p~~~~~~~li~ 172 (248)
+..+-+---++.+-....++.-+..-...++ +...|+...+...++.-... | -.|.+.....++.
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii---fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~ 247 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAII---FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ 247 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhh---hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH
Confidence 3333333334444444455555544444444 44566666666655543221 2 2477888888888
Q ss_pred HHHhcCchHHHHHHHHHHHHCCCCCCc
Q 039342 173 ALWCLGLRERAARVLDEATKRGLFPEL 199 (248)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~g~~p~~ 199 (248)
.|.+ +++++|.++++++-+.|+.|..
T Consensus 248 ~~~~-~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 248 ACLK-RNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHHh-ccHHHHHHHHHHHHHcCCCHHH
Confidence 7765 5799999999999999998853
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.54 E-value=72 Score=21.43 Aligned_cols=44 Identities=7% Similarity=0.119 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHH
Q 039342 111 DAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154 (248)
Q Consensus 111 ~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 154 (248)
.+..+|..|..+|+-.....|.......+...++++.|..++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 89999999999998888888887777778888999999999874
No 401
>PF13934 ELYS: Nuclear pore complex assembly
Probab=51.11 E-value=1e+02 Score=23.17 Aligned_cols=110 Identities=12% Similarity=-0.003 Sum_probs=54.0
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH
Q 039342 51 KVRCDPNERTLEAVLSVYCFAG--LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128 (248)
Q Consensus 51 ~~~~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 128 (248)
.-++++. |...+.++.... +++.|.+.+ .+-.+.|+ --.-++.++...|+.+.|+.+++...-....+..
T Consensus 72 ~f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L---~~ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~ 143 (226)
T PF13934_consen 72 AFGIPPK---YIKFIQGFWLLDHGDFEEALELL---SHPSLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLSSPEA 143 (226)
T ss_pred HhCCCHH---HHHHHHHHHHhChHhHHHHHHHh---CCCCCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHH
Confidence 3455443 555666665543 455555544 22222222 2225777777788888888888865433222222
Q ss_pred HhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039342 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175 (248)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 175 (248)
.+....+ -.++...+|...-+...+.. ....+..++..+.
T Consensus 144 ~~~~~~~----La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 144 LTLYFVA----LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHH----HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 2211111 22345566665554444321 1344555555554
No 402
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=50.65 E-value=71 Score=21.11 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=16.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC
Q 039342 64 VLSVYCFAGLVDESKEQFQEIKSSG 88 (248)
Q Consensus 64 ll~~~~~~g~~~~a~~~~~~m~~~~ 88 (248)
+|+...++...++|+++.+.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4555566666666666666666665
No 403
>COG0819 TenA Putative transcription activator [Transcription]
Probab=50.15 E-value=1.1e+02 Score=23.03 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=17.7
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHH
Q 039342 17 SGVARNSDSFNAVIEAFRQGGRFEEA 42 (248)
Q Consensus 17 ~g~~~~~~~y~~li~~~~~~~~~~~a 42 (248)
....|....|...|...+..|++.+.
T Consensus 103 ~~~~~~~~aYt~ym~~~~~~g~~~~~ 128 (218)
T COG0819 103 TEPSPANKAYTRYLLDTAYSGSFAEL 128 (218)
T ss_pred cCCCchHHHHHHHHHHHHhcCCHHHH
Confidence 34456667777778777777776554
No 404
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=49.99 E-value=50 Score=27.55 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHHHCCCCCCcchhhhHH
Q 039342 179 LRERAARVLDEATKRGLFPELFRHNKLV 206 (248)
Q Consensus 179 ~~~~a~~~~~~m~~~g~~p~~~t~~~li 206 (248)
+.+...++|..|.++|+..-...|+...
T Consensus 378 d~~~~~~~~~~~l~~GV~l~ps~~ea~f 405 (432)
T COG0001 378 DVERFAKFFHHLLNRGVYLAPSQFEAGF 405 (432)
T ss_pred chHHHHHHHHHHHhCCcccCCcccccee
Confidence 4557777888999999887776665544
No 405
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=49.61 E-value=1.1e+02 Score=26.06 Aligned_cols=143 Identities=10% Similarity=0.043 Sum_probs=83.3
Q ss_pred HhcCCHHHHHHHHHHHHHc----C-CCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhc
Q 039342 34 RQGGRFEEAIKAYVEMEKV----R-CDPNERTLE--AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106 (248)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~----~-~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 106 (248)
++.|..+-+.-+++..... | +..|-.++. .=+.+.+.+|.++-+..+++.- ..+.-++.|-++=+.+-|-.
T Consensus 50 aRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~g--a~VN~tT~TNStPLraACfD 127 (615)
T KOG0508|consen 50 ARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRG--ASVNDTTRTNSTPLRAACFD 127 (615)
T ss_pred hhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhc--CccccccccCCccHHHHHhc
Confidence 4778888777777765322 1 111211111 1255667778887666665543 33444555665666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCchH---HhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCchH
Q 039342 107 NRWDDAYGLLDEMHTNRISNIH---QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFY--NALLEALWCLGLRE 181 (248)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~ 181 (248)
|+++ +.+.+.+.|..|.. .--+.++.++|. |+.+ +.+.+.+.|..++..++ |+.+.-|+..|.+|
T Consensus 128 G~le----ivKyLvE~gad~~IanrhGhTcLmIa~yk--Gh~~----I~qyLle~gADvn~ks~kGNTALH~caEsG~vd 197 (615)
T KOG0508|consen 128 GHLE----IVKYLVEHGADPEIANRHGHTCLMIACYK--GHVD----IAQYLLEQGADVNAKSYKGNTALHDCAESGSVD 197 (615)
T ss_pred chhH----HHHHHHHcCCCCcccccCCCeeEEeeecc--CchH----HHHHHHHhCCCcchhcccCchHHHhhhhcccHH
Confidence 6655 45555566654432 223345554333 3334 44555667777777776 68999999999988
Q ss_pred HHHHHHH
Q 039342 182 RAARVLD 188 (248)
Q Consensus 182 ~a~~~~~ 188 (248)
-...++.
T Consensus 198 ivq~Ll~ 204 (615)
T KOG0508|consen 198 IVQLLLK 204 (615)
T ss_pred HHHHHHh
Confidence 6666655
No 406
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=49.11 E-value=1.9e+02 Score=25.60 Aligned_cols=196 Identities=11% Similarity=0.025 Sum_probs=92.9
Q ss_pred hcCCHHHHHHHHHHHHHcC--CC----CCHHHHHHHHHH--HHhcCChhHHHHHHH--------HHHHCCCCcCHhhHHH
Q 039342 35 QGGRFEEAIKAYVEMEKVR--CD----PNERTLEAVLSV--YCFAGLVDESKEQFQ--------EIKSSGILPSVMCYCM 98 (248)
Q Consensus 35 ~~~~~~~a~~~~~~m~~~~--~~----p~~~t~~~ll~~--~~~~g~~~~a~~~~~--------~m~~~~~~p~~~~~~~ 98 (248)
-.+++..|...++.|.+.. .+ .....+...+.+ +-..|+.+.|...|. .....+..++..++..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 4688999999999986542 11 112233333333 335689999999997 4445555555555544
Q ss_pred HHHHH--H--hcCCHHH--HHHHHHHHHHC---CCCchHHhHHHHhcccccccch--HHHHHHH-HHHHHhc----CCCC
Q 039342 99 LLAVY--A--KSNRWDD--AYGLLDEMHTN---RISNIHQVTGQMIKGEFDDESN--WQMVEYV-FDKLNCE----GYGL 162 (248)
Q Consensus 99 li~~~--~--~~~~~~~--a~~~~~~m~~~---~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~-~~~m~~~----~~~p 162 (248)
+=... . .....++ +..+++.+... ....+..+.+.++...+..... ..++... .+.++.. +..-
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 22222 2 2222333 67777766442 1112333444443322221111 1122222 2222222 2111
Q ss_pred -CHHHHHHHHHHHHhcCchHHHHHHHHHHHH-CCCCCCc--chhhhHHhhhhhhccccchHHHHHHHHHHHHH
Q 039342 163 -GMRFYNALLEALWCLGLRERAARVLDEATK-RGLFPEL--FRHNKLVWSVDVHRMWEGGAYTAISVWLNKMY 231 (248)
Q Consensus 163 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~--~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~ 231 (248)
...+++.+-.-+. .|+..+..+......+ ..-.||. ..+..+....+...+-..|+.+++.....+..
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 1122232222333 6777776655554221 1112332 22333333444556777888888888766554
No 407
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=48.44 E-value=1.3e+02 Score=23.63 Aligned_cols=148 Identities=9% Similarity=0.029 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHCCC----CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHH
Q 039342 74 VDESKEQFQEIKSSGI----LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVE 149 (248)
Q Consensus 74 ~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (248)
.+.|.+.|+.....+. ..++.....++....+.|..+....+++...... +...-..++.+ .....+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~---~~~~k~~~l~a-La~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNST---SPEEKRRLLSA-LACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS---THHHHHHHHHH-HTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccC---CHHHHHHHHHh-hhccCCHHHHH
Confidence 6677778888776422 3455667777888888888666555555554332 33333444444 55566677778
Q ss_pred HHHHHHHhcC-CCCCHHHHHHHHHHHHhcCch--HHHHHHHHH---HHHCCCCCCcchhhhHHhhhhhhccccchHHHHH
Q 039342 150 YVFDKLNCEG-YGLGMRFYNALLEALWCLGLR--ERAARVLDE---ATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAI 223 (248)
Q Consensus 150 ~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~---m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~ 223 (248)
++++.....+ +++ .. ...++.++...+.. +.+.+.+.. .....+.++......++..+ ...++.....+++
T Consensus 222 ~~l~~~l~~~~v~~-~d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~-~~~~~t~~~~~~~ 298 (324)
T PF11838_consen 222 RLLDLLLSNDKVRS-QD-IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSF-AGNFSTEEQLDEL 298 (324)
T ss_dssp HHHHHHHCTSTS-T-TT-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCC-CTT--SHHHHHHH
T ss_pred HHHHHHcCCccccc-HH-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH-hccCCCHHHHHHH
Confidence 8888887754 443 33 34455555534433 666666553 11222333332334444221 1334455566655
Q ss_pred HHHHH
Q 039342 224 SVWLN 228 (248)
Q Consensus 224 ~~~~~ 228 (248)
.++++
T Consensus 299 ~~f~~ 303 (324)
T PF11838_consen 299 EEFFE 303 (324)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55553
No 408
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=48.25 E-value=59 Score=21.48 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=12.8
Q ss_pred HHHHHHHHHH-HcCCCC-CHHhHHHHHHHH
Q 039342 6 ECQAILSRMS-ESGVAR-NSDSFNAVIEAF 33 (248)
Q Consensus 6 ~a~~~~~~m~-~~g~~~-~~~~y~~li~~~ 33 (248)
++.+.+.+++ ..|+.| |+.+=-++-..+
T Consensus 7 ~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL 36 (113)
T PF08870_consen 7 KAKEQLKKLKRRTGITPWNILCRIAFCRSL 36 (113)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 4455555554 235555 444433333333
No 409
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=47.59 E-value=81 Score=20.86 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=27.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039342 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 66 (248)
+|+.+.++...++|+++++.|.+.| ..+...-+.|-.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 6677788899999999999999988 355544444433
No 410
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=47.32 E-value=2.1e+02 Score=26.27 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=41.1
Q ss_pred ccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhc---C-chH----HHHHHHHHHHHCCCCCCc---chhhhHH
Q 039342 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA-LWCL---G-LRE----RAARVLDEATKRGLFPEL---FRHNKLV 206 (248)
Q Consensus 139 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~---g-~~~----~a~~~~~~m~~~g~~p~~---~t~~~li 206 (248)
+...|.++.+..++....+.... ..+.|.+++- .+.. + +.+ .|...-+-...++..+.. .|++.|+
T Consensus 632 a~~~G~~~~sI~LY~lag~yd~a--l~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~t~~lLl 709 (835)
T KOG2168|consen 632 ADEDGLFEDAILLYHLAGDYDKA--LELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVKTLSLLL 709 (835)
T ss_pred HHhcCCHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHHHHHHHH
Confidence 55667777777776655443211 2233333332 1111 0 111 222222222234444433 3555555
Q ss_pred hhhhhhccccchHHHHHHHHHHHHH
Q 039342 207 WSVDVHRMWEGGAYTAISVWLNKMY 231 (248)
Q Consensus 207 ~~~~~~~~~~~g~~~~~~~~~~~m~ 231 (248)
.-....-....|++++|.+.++.+.
T Consensus 710 ~~~~~f~~y~~~~~e~aL~~le~l~ 734 (835)
T KOG2168|consen 710 DLVSFFDLYHNGEWEEALSILEHLD 734 (835)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444455566677777655555443
No 411
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=46.84 E-value=44 Score=28.10 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 039342 38 RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87 (248)
Q Consensus 38 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 87 (248)
.+++-.++++.+.+.| .+| ...+-|++|-|.+++++|...+++-.+.
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~ 115 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKA 115 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhc
Confidence 4688888888888876 244 3445689999999999999999887764
No 412
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=46.83 E-value=2.2e+02 Score=25.59 Aligned_cols=59 Identities=20% Similarity=0.332 Sum_probs=39.2
Q ss_pred CHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGR--FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE 83 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 83 (248)
+.-.++..=.+|.+..+ +-+...-+++|+++|-.|+... +...|+-.|++.+|-++|.+
T Consensus 597 eAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 597 EALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 34455666667776655 3445555677888888888754 34556667888888888754
No 413
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=46.80 E-value=67 Score=19.84 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=23.3
Q ss_pred cccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHH
Q 039342 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184 (248)
Q Consensus 140 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 184 (248)
...|+.+.|..+++.+. .+.. -|..+++++-..|.-+.|.
T Consensus 43 ~~~G~~~aa~~Ll~~L~-r~~~----Wf~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 43 NNSGNIKAAWTLLDTLV-RRDN----WLEPFLDALRECGLGHLAR 82 (84)
T ss_pred hcCChHHHHHHHHHHHh-ccCC----hHHHHHHHHHHcCCHHHHH
Confidence 34566666666666666 3322 2566666766666555543
No 414
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=46.71 E-value=1.6e+02 Score=23.93 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=59.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHH-----CCCCcCHh
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKV---RCDPNERTLE--AVLSVYCFAGLVDESKEQFQEIKS-----SGILPSVM 94 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~ 94 (248)
....++...-+.+|.++|++.++++.+. --.|+...|. .+..++...|+.+++++++++.++ .+++|++.
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3344555556667999999999998553 2357777775 455667788999999999999887 58887654
Q ss_pred h-HHHHHHHHH-hcCCHHH
Q 039342 95 C-YCMLLAVYA-KSNRWDD 111 (248)
Q Consensus 95 ~-~~~li~~~~-~~~~~~~ 111 (248)
+ |..+-.-|- +.|++..
T Consensus 157 ~~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred hhHHHHHHHHHHHHHhHHH
Confidence 3 555444443 3444443
No 415
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.70 E-value=1.7e+02 Score=24.20 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=40.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHh--hHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 039342 67 VYCFAGLVDESKEQFQEIKSSGILPSVM--CYCMLLAVYA--KSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 67 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~--~~~~~~~a~~~~~~m~~~ 122 (248)
...+.+++..|.++|+.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445789999999999999876 555554 4555556655 356788899999887655
No 416
>PRK11906 transcriptional regulator; Provisional
Probab=46.54 E-value=1.8e+02 Score=24.64 Aligned_cols=148 Identities=5% Similarity=-0.115 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHH-HcCCCCCH-HHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhc
Q 039342 38 RFEEAIKAYVEME-KVRCDPNE-RTLEAVLSVYCF---------AGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106 (248)
Q Consensus 38 ~~~~a~~~~~~m~-~~~~~p~~-~t~~~ll~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 106 (248)
..+.|+.+|.+.. ...+.|+- ..|..+-.++.. .....+|.++-+...+.+ .-|......+-.+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4667777777775 22344443 334333333221 223455666666666654 22666666666666777
Q ss_pred CCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCchHHHHH
Q 039342 107 NRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE-GYGLGMRFYNALLEALWCLGLRERAAR 185 (248)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~ 185 (248)
++.+.|...|++-..-+ |+.........-...-.|+.+.+.+.+++-.+. -.+.-.......++.|+..+ ++.|..
T Consensus 352 ~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 88999999999987654 555443333322244567788999888885444 23334455556666777765 566666
Q ss_pred HHHH
Q 039342 186 VLDE 189 (248)
Q Consensus 186 ~~~~ 189 (248)
++-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 6544
No 417
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.51 E-value=1.9e+02 Score=24.95 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=35.9
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C----------CCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 039342 16 ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---C----------DPNERTLEAVLSVYCFAGLVDESKEQFQ 82 (248)
Q Consensus 16 ~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~---~----------~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 82 (248)
+.|+..+......++... .|+...|..++++....| + .++....-.++.+... |+.+.+..+++
T Consensus 193 ~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~~~ 269 (509)
T PRK14958 193 EENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGCVT 269 (509)
T ss_pred HcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 445555555444443332 466666666665544322 0 1222222333333333 55666666666
Q ss_pred HHHHCCCCcC
Q 039342 83 EIKSSGILPS 92 (248)
Q Consensus 83 ~m~~~~~~p~ 92 (248)
++.+.|..|.
T Consensus 270 ~l~~~g~~~~ 279 (509)
T PRK14958 270 RLVEQGVDFS 279 (509)
T ss_pred HHHHcCCCHH
Confidence 6666665543
No 418
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=46.46 E-value=58 Score=22.43 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 68 (248)
|... +..+...|-..+...++++|.++|+..+..+|+.+++-.
T Consensus 112 tlGv-L~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 112 TLGV-LALAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred hhHH-HHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 4443 344455678888889999999999999999999887643
No 419
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=46.29 E-value=1.1e+02 Score=22.04 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 42 AIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120 (248)
Q Consensus 42 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 120 (248)
..+++..+.+.|.--|..--.+.+..-.+.| ..-..+..++.+.|+ +..+-...+..+......+.|..++..-.
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~ 128 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKF 128 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 4555566666666555554455566555555 445667777778874 44555666665666566666666665543
No 420
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=46.05 E-value=48 Score=19.79 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=14.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 039342 36 GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67 (248)
Q Consensus 36 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 67 (248)
.++.+.+.+++++..+.|+.|.....+.+.-+
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~ 45 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPA 45 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34444555555555444444444444334333
No 421
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.71 E-value=48 Score=20.38 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=22.6
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHCC
Q 039342 169 ALLEALWCLGLRERAARVLDEATKRG 194 (248)
Q Consensus 169 ~li~~~~~~g~~~~a~~~~~~m~~~g 194 (248)
++++.+.++.--++|+++++.|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 56777888889999999999999887
No 422
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=44.60 E-value=2.4e+02 Score=25.54 Aligned_cols=85 Identities=9% Similarity=0.059 Sum_probs=51.7
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CC----------cCHhhHHHHHHHHHh
Q 039342 40 EEAIKAYVE-MEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG---IL----------PSVMCYCMLLAVYAK 105 (248)
Q Consensus 40 ~~a~~~~~~-m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~----------p~~~~~~~li~~~~~ 105 (248)
++....+.. +.+.|+..+......++... .|+...+..+++++...| +. ++......|+.++.+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 333344433 35567777777777776655 478888888887765422 11 122334445555444
Q ss_pred cCCHHHHHHHHHHHHHCCCCch
Q 039342 106 SNRWDDAYGLLDEMHTNRISNI 127 (248)
Q Consensus 106 ~~~~~~a~~~~~~m~~~~~~~~ 127 (248)
++...++.+++++...|..+.
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHH
Confidence 778888888888887776543
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.59 E-value=78 Score=19.80 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=28.5
Q ss_pred HHhcCCHHHHHHHHHHH----HHcCCCCC--HHHH--HHHHHHHHhcCChhHHHHHHHHHHH
Q 039342 33 FRQGGRFEEAIKAYVEM----EKVRCDPN--ERTL--EAVLSVYCFAGLVDESKEQFQEIKS 86 (248)
Q Consensus 33 ~~~~~~~~~a~~~~~~m----~~~~~~p~--~~t~--~~ll~~~~~~g~~~~a~~~~~~m~~ 86 (248)
..+.|++..|.+.+.+. ...+..+. ...+ -.+...+...|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34567777775555444 33332221 1112 2233445667777777777777653
No 424
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=44.28 E-value=11 Score=21.21 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 039342 5 KECQAILSRMSESGVARNSDSFNAVIEAFR 34 (248)
Q Consensus 5 ~~a~~~~~~m~~~g~~~~~~~y~~li~~~~ 34 (248)
++...+|..|..+...|....||-.+.-|.
T Consensus 9 ~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 9 EELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred HHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 445566666666666665555555554443
No 425
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.17 E-value=4.1e+02 Score=28.00 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCC
Q 039342 164 MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238 (248)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~ 238 (248)
..+|-..-+..-+.|.++.|...+-...+.+ .|....= .. +-.|..|+...|..++++-.+......
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E--~A-----K~lW~~gd~~~Al~~Lq~~l~~~~~~~ 1736 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLE--RA-----KLLWQTGDELNALSVLQEILSKNFPDL 1736 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHH--HH-----HHHHhhccHHHHHHHHHHHHHhhcccc
Confidence 4567777777778999999999887776665 4533221 11 446789999999999998887766653
No 426
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=43.88 E-value=69 Score=19.53 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHh--cCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCCC
Q 039342 165 RFYNALLEALWC--LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239 (248)
Q Consensus 165 ~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~~ 239 (248)
.+|..++..+.+ .-..+.|.++.......| ++.+..+..+.|+.....+...|-.+..
T Consensus 17 ht~~~Vi~~L~~~~~~s~~~A~~~a~~v~~~G-----------------~avv~~~~~e~ae~~~~~l~~~g~~~~~ 76 (82)
T PF02617_consen 17 HTFEQVIDVLRRVFGCSEEQARQIAMEVHREG-----------------RAVVGTGSREEAEEYAEKLQRAGRDSGH 76 (82)
T ss_dssp SBHHHHHHHHHHHC---HHHHHHHHHHHHHHS-----------------EEEEEEEEHHHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHhHcC-----------------CEeeeeCCHHHHHHHHHHHHHHhhccCC
Confidence 445555555444 335678888888877766 4445677888999999999999854443
No 427
>PLN03025 replication factor C subunit; Provisional
Probab=43.63 E-value=1.7e+02 Score=23.34 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=12.6
Q ss_pred chHHHHHHHHHHHHhcCCCCC
Q 039342 143 SNWQMVEYVFDKLNCEGYGLG 163 (248)
Q Consensus 143 ~~~~~a~~~~~~m~~~~~~p~ 163 (248)
++++.+...+..|...|..|.
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~ 258 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPT 258 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455666666666666666554
No 428
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=43.57 E-value=2.1e+02 Score=24.60 Aligned_cols=76 Identities=12% Similarity=0.035 Sum_probs=48.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCC-CCCHHHHHHHHHH
Q 039342 98 MLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY-GLGMRFYNALLEA 173 (248)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~ 173 (248)
-+-.++-+.|+.++|.+.+++|.+..-..+.......+..++-..+.+.++..++.+-.+... +.-...|+..+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 344455578999999999999976542223443444444447777888999999888654322 2234456665533
No 429
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.42 E-value=91 Score=25.67 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=28.1
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHh--cCchHHHHHHHHHHHH
Q 039342 141 DESNWQMVEYVFDKLNCEGYGLGMR--FYNALLEALWC--LGLRERAARVLDEATK 192 (248)
Q Consensus 141 ~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~--~g~~~~a~~~~~~m~~ 192 (248)
+.+++..|.++++.+... ++++.. .|..+..+|.. .-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455667777777776665 444433 34444444433 4455566666665543
No 430
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=43.40 E-value=2.3e+02 Score=24.97 Aligned_cols=62 Identities=8% Similarity=0.148 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 124 (248)
.|..|+...... +.+...++++++.... -....+..++++....|-...+.-+.+.+....+
T Consensus 348 ~f~~Lv~~lr~l-~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~ 409 (618)
T PF01347_consen 348 KFSRLVRLLRTL-SYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKL 409 (618)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Confidence 355555554433 4556666666665432 3456677777777777776665555555554443
No 431
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=42.70 E-value=74 Score=20.72 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHH-cCCCC-CHHhHHHHHHHH
Q 039342 5 KECQAILSRMSE-SGVAR-NSDSFNAVIEAF 33 (248)
Q Consensus 5 ~~a~~~~~~m~~-~g~~~-~~~~y~~li~~~ 33 (248)
++|.+.|.+++. .|+.| |+.+=-++...+
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL 35 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSL 35 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHH
Confidence 345566666653 35655 444433333333
No 432
>PHA02798 ankyrin-like protein; Provisional
Probab=42.35 E-value=1.3e+02 Score=25.67 Aligned_cols=81 Identities=7% Similarity=-0.054 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHh---hHHHHHHHHHhcCCHHHHHHHHH
Q 039342 44 KAYVEMEKVRCDPNE---RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM---CYCMLLAVYAKSNRWDDAYGLLD 117 (248)
Q Consensus 44 ~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~ 117 (248)
++.+.+.+.|..+|. .-.+.|..++.....+....++.+.+.+.|..++.. -.+.+..+ +..+.. .-.++++
T Consensus 52 ~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a-~~~~~~-~~~~iv~ 129 (489)
T PHA02798 52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCL-LSNGYI-NNLEILL 129 (489)
T ss_pred HHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHH-HHcCCc-ChHHHHH
Confidence 455666667776653 111222222211112334467888888888776543 23334333 333321 2245555
Q ss_pred HHHHCCCCc
Q 039342 118 EMHTNRISN 126 (248)
Q Consensus 118 ~m~~~~~~~ 126 (248)
.+.+.|..+
T Consensus 130 ~Ll~~Gadv 138 (489)
T PHA02798 130 FMIENGADT 138 (489)
T ss_pred HHHHcCCCc
Confidence 555666544
No 433
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.32 E-value=1.6e+02 Score=22.80 Aligned_cols=194 Identities=13% Similarity=0.109 Sum_probs=87.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH------HHHHHHHHhcCChhHHHHHHHHHH----HCCCCcC
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL------EAVLSVYCFAGLVDESKEQFQEIK----SSGILPS 92 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~------~~ll~~~~~~g~~~~a~~~~~~m~----~~~~~p~ 92 (248)
...|.-.-.+|-...++++|...+.+..+ +.+.|...| ....-..-....+.++..++++.. +.| .|+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spd 108 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPD 108 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-Ccc
Confidence 34566667778888888888876666532 222333222 222223333344555555554432 223 233
Q ss_pred HhhHHHHHHH--HHhcCCHHHHHHHHHHHHHC----CC-CchHHhHHHHhcccccccchHHHHHHHHHHHHh----cCCC
Q 039342 93 VMCYCMLLAV--YAKSNRWDDAYGLLDEMHTN----RI-SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC----EGYG 161 (248)
Q Consensus 93 ~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~ 161 (248)
+.... |=++ ...+.++++|+++|++-... +. ..-...+...-+. +.+...+.++-..+..-.. -.-.
T Consensus 109 tAAma-leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~-lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 109 TAAMA-LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV-LVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred hHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH-hhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 22211 1111 12334556666666553211 10 0001111111111 2233333333322221111 0111
Q ss_pred CCH-HHHHHHHHHHHhcCchHHHHHHHHHHHHCC---CCCCcchhhhHHhhhhhhccccchHHHHHHHH
Q 039342 162 LGM-RFYNALLEALWCLGLRERAARVLDEATKRG---LFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226 (248)
Q Consensus 162 p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~ 226 (248)
|+. ..|-..|-.+.-..++..|...+++--+.+ -.-+..+...|+ .+| ..|+.+++..+
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL-----~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL-----TAY-DEGDIEEIKKV 249 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH-----HHh-ccCCHHHHHHH
Confidence 222 335566666777788999999998754322 222445566666 444 45666655543
No 434
>COG5210 GTPase-activating protein [General function prediction only]
Probab=42.04 E-value=2.3e+02 Score=24.41 Aligned_cols=62 Identities=13% Similarity=0.273 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhc
Q 039342 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136 (248)
Q Consensus 75 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~ 136 (248)
+..-++++.+.+.|+.+...++.-++..+.+.-.++.+.++++.+--.|.......+.+++.
T Consensus 359 ~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~ 420 (496)
T COG5210 359 ELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILK 420 (496)
T ss_pred HHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34457888999999999999999999999999999999999999988886655555544443
No 435
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.79 E-value=2.6e+02 Score=26.13 Aligned_cols=116 Identities=8% Similarity=0.040 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCc-CHhhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCchHHhHHH-
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSG--ILP-SVMCYCMLLAVYAKSNRW--DDAYGLLDEMHTNRISNIHQVTGQ- 133 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p-~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~- 133 (248)
-|..|+..|...|+.++|.++|.+..+.- ..+ -...+.-++.-+.+.+.- +-.++.-+-..+..-.....++..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 36778888888888888888888876521 011 112233344444444332 333333222221111000000100
Q ss_pred -----------HhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 039342 134 -----------MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC 176 (248)
Q Consensus 134 -----------~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 176 (248)
-+.. +......+.+...++.+....-.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~-~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLN-YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHH-HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 0111 12223446667777777777666777788888888775
No 436
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.65 E-value=2.3e+02 Score=24.47 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 168 NALLEALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
..+++++ ..++.++|..+++++...|..|.
T Consensus 246 f~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 246 RGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 3344444 33566666666666666665553
No 437
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=41.51 E-value=83 Score=19.26 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 039342 94 MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126 (248)
Q Consensus 94 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 126 (248)
.....++..+.. ++++++...+.++...|..+
T Consensus 6 ~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~ 37 (89)
T PF08542_consen 6 EVIEEILESCLN-GDFKEARKKLYELLVEGYSA 37 (89)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCH
Confidence 333444444333 36666666666665555443
No 438
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=41.45 E-value=1.9e+02 Score=23.30 Aligned_cols=81 Identities=6% Similarity=0.003 Sum_probs=51.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CcCHhhHHHHHH-----------HHHhcCCHHH
Q 039342 45 AYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGI--LPSVMCYCMLLA-----------VYAKSNRWDD 111 (248)
Q Consensus 45 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~-----------~~~~~~~~~~ 111 (248)
+-++..+.|+..+......++..+. |+...+.+-++.+.-... ..+......++. -....|+..+
T Consensus 149 i~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~ 226 (334)
T COG1466 149 IKKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKK 226 (334)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHH
Confidence 3455677788888888888887776 666666666666642211 223222222222 2245688888
Q ss_pred HHHHHHHHHHCCCCch
Q 039342 112 AYGLLDEMHTNRISNI 127 (248)
Q Consensus 112 a~~~~~~m~~~~~~~~ 127 (248)
|..+++++...|..|-
T Consensus 227 a~~~l~~L~~~ge~p~ 242 (334)
T COG1466 227 ALRLLRDLLLEGEEPL 242 (334)
T ss_pred HHHHHHHHHHcCCcHH
Confidence 9999999888886653
No 439
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.32 E-value=1.6e+02 Score=22.47 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCc-hHHhHHHHhcccccccchHHHHH
Q 039342 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH----TNRISN-IHQVTGQMIKGEFDDESNWQMVE 149 (248)
Q Consensus 75 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 149 (248)
+.|.+.|...... .......-.|-.-|.+.|++++|.++|+.+. +.|-.. ...+...+. .+....++.+...
T Consensus 162 ~~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~-~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 162 EKAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLL-ECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH-HHHHHhCCHHHHH
Confidence 3455555544432 2234455567888999999999999999873 334333 333333343 4466667666666
Q ss_pred HHHHHH
Q 039342 150 YVFDKL 155 (248)
Q Consensus 150 ~~~~~m 155 (248)
.+--+|
T Consensus 239 ~~~leL 244 (247)
T PF11817_consen 239 TTSLEL 244 (247)
T ss_pred HHHHHH
Confidence 554443
No 440
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=41.04 E-value=44 Score=21.28 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH
Q 039342 36 GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV 93 (248)
Q Consensus 36 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 93 (248)
...+..+..+|..+.+.|. ++...+..+...+..-++.|-- ..+..=++..+.|++
T Consensus 37 ~e~i~s~~~Lf~~Lee~gl-l~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~ 92 (97)
T cd08790 37 RGLIRSGRDFLLALERQGR-CDETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDL 92 (97)
T ss_pred ccCcCcHHHHHHHHHHcCC-CccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCch
Confidence 3456667777777776664 3333444555555555555544 444333444455543
No 441
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=40.76 E-value=1.3e+02 Score=22.12 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=60.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHH-HHHhcC--ChhHHHHHHHHHHHCCCCcCHh--
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV--RCDPNERTLEAVLS-VYCFAG--LVDESKEQFQEIKSSGILPSVM-- 94 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~-~~~~~g--~~~~a~~~~~~m~~~~~~p~~~-- 94 (248)
.+.-+....-.....|++++|..-++++.+. .++--...|..+.. +++..+ .+-+|..++..+...++ |+..
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~-ps~~EL 106 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRL-PSPEEL 106 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCC-CCHHHc
Confidence 3445556666677888899988888877432 22222344555554 455444 46677777877765432 3321
Q ss_pred --hHHHHHHHH--------------HhcCCHHHHHHHHHHHHHC
Q 039342 95 --CYCMLLAVY--------------AKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 95 --~~~~li~~~--------------~~~~~~~~a~~~~~~m~~~ 122 (248)
.+-.-|.+. .+.|+++.|.++++-|.+-
T Consensus 107 ~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 107 GVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 222233333 3578999999999999754
No 442
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=39.84 E-value=3.3e+02 Score=25.74 Aligned_cols=112 Identities=16% Similarity=0.067 Sum_probs=59.8
Q ss_pred HhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 039342 93 VMCYCMLLAVYAKSN--RWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNAL 170 (248)
Q Consensus 93 ~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 170 (248)
..-...+|.+|++.+ ++++|+....++++.+...-......++-- ...+.-++.|.-+|+- . -++
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fL-vDvn~Ly~~ALG~YDl----------~--Lal 878 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFL-VDVNKLYDVALGTYDL----------E--LAL 878 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheee-ccHHHHHHHHhhhcCH----------H--HHH
Confidence 345568889999988 899999999999877322222222222211 1112222222222210 0 133
Q ss_pred HHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHH
Q 039342 171 LEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLN 228 (248)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~ 228 (248)
+-|--.+.+..+-+-.++++++. +|+..-|.+=. ..|++++|.+.+.
T Consensus 879 ~VAq~SQkDPKEYLPfL~~L~~l--~~~~rry~ID~---------hLkRy~kAL~~L~ 925 (928)
T PF04762_consen 879 MVAQQSQKDPKEYLPFLQELQKL--PPLYRRYKIDD---------HLKRYEKALRHLS 925 (928)
T ss_pred HHHHHhccChHHHHHHHHHHHhC--ChhheeeeHhh---------hhCCHHHHHHHHH
Confidence 34444566777777777777653 44443333322 4567777665544
No 443
>PRK09857 putative transposase; Provisional
Probab=39.40 E-value=1.9e+02 Score=22.83 Aligned_cols=67 Identities=9% Similarity=0.024 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPS 92 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 92 (248)
.+..++....+.++.++..++++.+.+. ++.-....-++..-+.+.|.-+++.++...|...|+.++
T Consensus 208 ~~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 208 QIKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3556776667778877777787777655 333333444556666667777778888888888887765
No 444
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.35 E-value=1.9e+02 Score=22.92 Aligned_cols=52 Identities=8% Similarity=0.120 Sum_probs=32.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhH-------HHHHHHHHhcCCHHHHHHH
Q 039342 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY-------CMLLAVYAKSNRWDDAYGL 115 (248)
Q Consensus 64 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-------~~li~~~~~~~~~~~a~~~ 115 (248)
+.+-..+.+++++|...+.++...|+.-+..+. ..+-+.|...|+...--+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344456677888888888888877777664433 3445556666655444333
No 445
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=39.31 E-value=47 Score=21.38 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=25.5
Q ss_pred HHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCCCCC
Q 039342 191 TKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLP 241 (248)
Q Consensus 191 ~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~ 241 (248)
++.|++....-..+++ .|.+++..+++++..+..++...+-
T Consensus 31 k~~glky~~~pm~T~i----------Eg~~del~~~ik~~~Ea~~~~g~~R 71 (100)
T COG0011 31 KESGLKYQLGPMGTVI----------EGELDELMEAVKEAHEAVFEKGAPR 71 (100)
T ss_pred HHcCCceeecCcceEE----------EecHHHHHHHHHHHHHHHHhcCCce
Confidence 3456666555555555 3477777777777777776665443
No 446
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=39.27 E-value=2.8e+02 Score=24.63 Aligned_cols=185 Identities=7% Similarity=-0.030 Sum_probs=100.7
Q ss_pred HHHHHHHHHH-HcCCCCC--HHhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhcCChhH
Q 039342 6 ECQAILSRMS-ESGVARN--SDSFNAVIEAFR-QGGRFEEAIKAYVEMEKVRCDPNER-----TLEAVLSVYCFAGLVDE 76 (248)
Q Consensus 6 ~a~~~~~~m~-~~g~~~~--~~~y~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~-----t~~~ll~~~~~~g~~~~ 76 (248)
.|++.++.+. +..+.|. ..++--+...+. ...+.+.|...+.+....--.++.. .-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 3455555555 3333332 335555556555 4577899999888763322122221 2234566666666655
Q ss_pred HHHHHHHHHHC----CCCcCHhhHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCchHHhHHHHhcccc-cccchHHH
Q 039342 77 SKEQFQEIKSS----GILPSVMCYCML-LAVYAKSNRWDDAYGLLDEMHTNR---ISNIHQVTGQMIKGEF-DDESNWQM 147 (248)
Q Consensus 77 a~~~~~~m~~~----~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~~l~~~~-~~~~~~~~ 147 (248)
|....++..+. +..+-...|.-+ +..+...++...|.+.++.+.... ..|...++..++.+.. ...+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 88888776542 222333445554 333334479999999998875543 2344444444433322 12233444
Q ss_pred HHHHHHHHHhc---------CCCCCHHHHHHHHHHHH--hcCchHHHHHHHHHHH
Q 039342 148 VEYVFDKLNCE---------GYGLGMRFYNALLEALW--CLGLRERAARVLDEAT 191 (248)
Q Consensus 148 a~~~~~~m~~~---------~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~ 191 (248)
+.+.++.+... .-.|-..+|..+++.++ ..|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555444221 12356777887877665 4677667776666554
No 447
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=38.78 E-value=1.5e+02 Score=21.55 Aligned_cols=15 Identities=27% Similarity=0.151 Sum_probs=7.9
Q ss_pred CcCHhhHHHHHHHHH
Q 039342 90 LPSVMCYCMLLAVYA 104 (248)
Q Consensus 90 ~p~~~~~~~li~~~~ 104 (248)
.|+..+|+.-+....
T Consensus 110 ~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 110 DPNNELYRKSLEMAA 124 (186)
T ss_dssp -TT-HHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 566666666666553
No 448
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=38.42 E-value=90 Score=18.80 Aligned_cols=33 Identities=6% Similarity=0.127 Sum_probs=17.4
Q ss_pred ChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhc
Q 039342 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106 (248)
Q Consensus 73 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 106 (248)
+.+.|..++..++... +.++..||++-+.+.++
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 3455555555555322 23556666666655554
No 449
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=38.06 E-value=2.6e+02 Score=25.25 Aligned_cols=70 Identities=23% Similarity=0.156 Sum_probs=47.0
Q ss_pred cCCCCCHHHHHHHHHHHHhcCC----hhHHHHHHHHHHH----CCCCcCH---hhHHHHHHHHHhcCCHHH---HHHHHH
Q 039342 52 VRCDPNERTLEAVLSVYCFAGL----VDESKEQFQEIKS----SGILPSV---MCYCMLLAVYAKSNRWDD---AYGLLD 117 (248)
Q Consensus 52 ~~~~p~~~t~~~ll~~~~~~g~----~~~a~~~~~~m~~----~~~~p~~---~~~~~li~~~~~~~~~~~---a~~~~~ 117 (248)
.|++.|...|..|+.++....+ ++++.++++.++. -|+.+.. .--..+.+-|+..|+.+. |...+.
T Consensus 211 dgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L~ 290 (677)
T PF05664_consen 211 DGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQLQ 290 (677)
T ss_pred cCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3789999999999999876443 5777777777764 3776532 223366777888887554 555555
Q ss_pred HHHH
Q 039342 118 EMHT 121 (248)
Q Consensus 118 ~m~~ 121 (248)
+...
T Consensus 291 ev~~ 294 (677)
T PF05664_consen 291 EVAK 294 (677)
T ss_pred HHHH
Confidence 5543
No 450
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.88 E-value=1.4e+02 Score=23.87 Aligned_cols=56 Identities=11% Similarity=-0.038 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhh
Q 039342 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209 (248)
Q Consensus 149 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 209 (248)
.++++.|++.++.|.-..|-.+.-.+...=.+.+...+|+.+...... |..|+..|
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iC 318 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYIC 318 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHH
Confidence 457888888889998888888888888877888888888887653222 55555444
No 451
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.65 E-value=2.2e+02 Score=23.06 Aligned_cols=60 Identities=13% Similarity=0.027 Sum_probs=26.2
Q ss_pred ccccchHHHHHHHHHHHH----hcCCCCCHHHHHHHHHH-HHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 139 FDDESNWQMVEYVFDKLN----CEGYGLGMRFYNALLEA-LWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 139 ~~~~~~~~~a~~~~~~m~----~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
+.+-|+-+.|.+.+..-- ..|.+.|...+.+-+-. |....-+.+-.+..+.+.+.|-..+
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWe 178 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWE 178 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChh
Confidence 444555555555444332 23555555444333222 2222333344444444555555443
No 452
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.65 E-value=1.7e+02 Score=21.64 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCcCHhhHHHHHH-HHHhcCC--HHHHH
Q 039342 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS--GILPSVMCYCMLLA-VYAKSNR--WDDAY 113 (248)
Q Consensus 39 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~-~~~~~~~--~~~a~ 113 (248)
-++++++-+++. -++...-.....|++++|..-++++.+. .+.--...|..+.. +++.++. +-+|.
T Consensus 19 REE~l~lsRei~---------r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 19 REEALKLSREIV---------RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Confidence 456666666664 3444555566778888888887777542 22223456666666 5666654 66777
Q ss_pred HHHHHHHHCCCCchH---HhHHHHhccc-------------ccccchHHHHHHHHHHHHhc
Q 039342 114 GLLDEMHTNRISNIH---QVTGQMIKGE-------------FDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 114 ~~~~~m~~~~~~~~~---~~~~~~l~~~-------------~~~~~~~~~a~~~~~~m~~~ 158 (248)
.++.-+.+.+.+... ..+...+.+. ....++++.|++.++-|...
T Consensus 90 ~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 90 LLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 777766555433111 0111122221 23467889999998888764
No 453
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.22 E-value=1.3e+02 Score=20.29 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=3.8
Q ss_pred HHHHHHHCCC
Q 039342 115 LLDEMHTNRI 124 (248)
Q Consensus 115 ~~~~m~~~~~ 124 (248)
+|..|..+++
T Consensus 85 if~~L~~~~I 94 (125)
T smart00777 85 LFQFLYSKGI 94 (125)
T ss_pred HHHHHHHCCc
Confidence 3333333333
No 454
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.88 E-value=2.6e+02 Score=23.56 Aligned_cols=141 Identities=9% Similarity=0.023 Sum_probs=71.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC--CCCcCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccc
Q 039342 63 AVLSVYCFAGLVDESKEQFQEIKSS--GILPSV-MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF 139 (248)
Q Consensus 63 ~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~ 139 (248)
-||+.+.-.|+.....+.++.|.+. |-.|.. +| --+--+|.--+++.+|.+.|-...-. +.-+...+...-..+-
T Consensus 240 GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niLly-Iqrtks~~~~~~y~~d 317 (525)
T KOG3677|consen 240 GLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNILLY-IQRTKSMFSRTTYQYD 317 (525)
T ss_pred HHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcchhhhHh
Confidence 4677778888988888888888753 444432 34 33445666677888888888765322 1111111110000001
Q ss_pred cccchHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHH-------hcCchHHHHHHHHHHHHCCCCCCcchhhhHH
Q 039342 140 DDESNWQMVEYVFDKLNCEGYG-LGMRFYNALLEALW-------CLGLRERAARVLDEATKRGLFPELFRHNKLV 206 (248)
Q Consensus 140 ~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~-------~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 206 (248)
..+..++...+++......-.. -| .++...++-++ ..|+.+.-..+|......-+.|-...|..+.
T Consensus 318 ~inKq~eqm~~llai~l~~yPq~iD-ESi~s~l~Ek~~d~ml~mqng~~q~~ks~f~y~cpkflsp~~~~~dgv~ 391 (525)
T KOG3677|consen 318 MINKQNEQMHHLLAICLSMYPQMID-ESIHSQLAEKYGDKMLPMQNGDPQVFKSLFSYLCPKFLSPVVPNYDGVL 391 (525)
T ss_pred hhhhhHHHHHHHHHHHHHhCchhhh-HHHHHHHHHHhcchhhhhhcCChHHHHHHHHHcCccccCCCCccccccc
Confidence 1122334444444333322111 12 33333333221 2466666666666655555556656666655
No 455
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=36.77 E-value=1.7e+02 Score=21.62 Aligned_cols=172 Identities=14% Similarity=0.138 Sum_probs=96.2
Q ss_pred cCCCCCHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 039342 17 SGVARNSDSFNAVIEAFRQGG----RFEEAIKAYVEMEKVRCDPNER----TLEAVLSVYCFAGLVDESKEQFQEIKSSG 88 (248)
Q Consensus 17 ~g~~~~~~~y~~li~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 88 (248)
.|..++...+|-++..+.+.. +.+-+..+-.+....++.++-. ..-.=+..|-+.|||.+.-.+|-..+..-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gc 81 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGC 81 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhc
Confidence 467788888888888877643 4555555555666666665443 23334567778888888877776665432
Q ss_pred CCcC-HhhHHHHH-HHHHhcCC--HHHHHHHHHHHHHCCCCch-------HHhHHHHhcccccccchHHHHHHHHHHHHh
Q 039342 89 ILPS-VMCYCMLL-AVYAKSNR--WDDAYGLLDEMHTNRISNI-------HQVTGQMIKGEFDDESNWQMVEYVFDKLNC 157 (248)
Q Consensus 89 ~~p~-~~~~~~li-~~~~~~~~--~~~a~~~~~~m~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 157 (248)
-.++ ...+...| .++.+..+ ..-=...|-+-.....+.+ ..+--+++.. |.+..+|.+..++++.|.+
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~-Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYS-YHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 2221 11222111 11211111 0000111111111111111 1111122323 6667788999999888876
Q ss_pred cCC--------------CCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 039342 158 EGY--------------GLGMRFYNALLEALWCLGLRERAARVLDE 189 (248)
Q Consensus 158 ~~~--------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 189 (248)
..+ .+--...|.....+.+.|+.|-|..++++
T Consensus 161 l~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 161 LQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 543 23445678888999999999999999884
No 456
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=36.67 E-value=1.5e+02 Score=21.38 Aligned_cols=45 Identities=16% Similarity=0.046 Sum_probs=30.6
Q ss_pred HHHHHHHh-cCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCC
Q 039342 150 YVFDKLNC-EGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194 (248)
Q Consensus 150 ~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 194 (248)
++++.+.+ .|+.|...++..++..+++.=..+.+..+|+.+...|
T Consensus 152 ~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 152 DLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 35566664 6777777777777777777666777777777665554
No 457
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=36.34 E-value=2e+02 Score=27.17 Aligned_cols=58 Identities=17% Similarity=0.051 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC
Q 039342 35 QGGRFEEAIKAYVEMEKVRCDPNER-TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPS 92 (248)
Q Consensus 35 ~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 92 (248)
....+.+++.+|+.|...|+-+... .|-..-..+.+.+.+.+|..+|..=.+....|-
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~ 148 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPL 148 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 3445566666666666666555443 333444455555666666666666555444443
No 458
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=36.27 E-value=2.3e+02 Score=22.81 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC
Q 039342 43 IKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPS 92 (248)
Q Consensus 43 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 92 (248)
.++-.-..++|++.|...+..+++.. .|++..|+..++.+...|-..+
T Consensus 195 ~rL~~Ia~~E~v~~d~~al~~I~~~S--~GdLR~Ait~Lqsls~~gk~It 242 (346)
T KOG0989|consen 195 DRLEKIASKEGVDIDDDALKLIAKIS--DGDLRRAITTLQSLSLLGKRIT 242 (346)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHhhccCcccc
Confidence 33333346678888888888777644 5888888888888766544444
No 459
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.20 E-value=2e+02 Score=22.14 Aligned_cols=23 Identities=0% Similarity=0.094 Sum_probs=16.1
Q ss_pred ccccchHHHHHHHHHHHHhcCCC
Q 039342 139 FDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 139 ~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
....+++..|..+|++.-...+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 44556788888888887765444
No 460
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.94 E-value=1.9e+02 Score=21.92 Aligned_cols=40 Identities=10% Similarity=0.226 Sum_probs=20.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039342 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 68 (248)
+...+-+.++++++...++++...+..++..=-|.+-.+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3444555566666666666665555555555555554444
No 461
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=35.86 E-value=3.4e+02 Score=24.69 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=54.7
Q ss_pred HHHHHHH-HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C----------CCCHHHHHHHHHHHHhcCC
Q 039342 8 QAILSRM-SESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---C----------DPNERTLEAVLSVYCFAGL 73 (248)
Q Consensus 8 ~~~~~~m-~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~---~----------~p~~~t~~~ll~~~~~~g~ 73 (248)
.+.+... .+.|+..+......++... .|++..++.+++++...| + .++......+++++.+ ++
T Consensus 184 ~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d 260 (709)
T PRK08691 184 ADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QD 260 (709)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CC
Confidence 3334333 4567777777777776655 589999999998875532 1 1233344455555555 88
Q ss_pred hhHHHHHHHHHHHCCCCcC
Q 039342 74 VDESKEQFQEIKSSGILPS 92 (248)
Q Consensus 74 ~~~a~~~~~~m~~~~~~p~ 92 (248)
...+..+++++.+.|+.+.
T Consensus 261 ~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 261 GAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHHHHHHHHhCCCHH
Confidence 9999999999998887654
No 462
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=35.79 E-value=3.2e+02 Score=24.35 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=36.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHhhHHHHHHHHHhc--
Q 039342 30 IEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAKS-- 106 (248)
Q Consensus 30 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-- 106 (248)
...+.-.|+++.|.+.+-. ..+...+...+.+.+.-|.-.+-.+... ..+... .-.|...-+..||..|++.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4455566777777777766 2334455555555555443322222211 222211 0011225567777777753
Q ss_pred -CCHHHHHHHHHHHHHC
Q 039342 107 -NRWDDAYGLLDEMHTN 122 (248)
Q Consensus 107 -~~~~~a~~~~~~m~~~ 122 (248)
.+...|.+.|--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 4566666666555443
No 463
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=35.60 E-value=1.5e+02 Score=21.40 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCcCHhhHHHHHHHHHhcCCH
Q 039342 38 RFEEAIKAYVEMEKVR----CDPNE---RTLEAVLSVYCFAGLVDESKEQFQEIKS-SGILPSVMCYCMLLAVYAKSNRW 109 (248)
Q Consensus 38 ~~~~a~~~~~~m~~~~----~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~ 109 (248)
+-+.|..++..+.+.. +.++. ......+..+.+.. --++++.+.+ .|+.|...++.-++..+++.-.+
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~ 183 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEY----DPDLYKHLKDKLGIDPSLYALRWFLTLFARELPL 183 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHH----CHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCH
Confidence 4667777777774432 34443 22233334444333 3467778875 88999999999999999998899
Q ss_pred HHHHHHHHHHHHCC
Q 039342 110 DDAYGLLDEMHTNR 123 (248)
Q Consensus 110 ~~a~~~~~~m~~~~ 123 (248)
+.+.++++.+...|
T Consensus 184 ~~~~riwD~~l~eG 197 (199)
T smart00164 184 EIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988776
No 464
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=35.53 E-value=1.8e+02 Score=21.26 Aligned_cols=27 Identities=4% Similarity=0.091 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHCCCCchHHhHHHHhcc
Q 039342 109 WDDAYGLLDEMHTNRISNIHQVTGQMIKG 137 (248)
Q Consensus 109 ~~~a~~~~~~m~~~~~~~~~~~~~~~l~~ 137 (248)
+++|...|++..+.. |++.+|+.-+.-
T Consensus 96 F~kA~~~FqkAv~~~--P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 96 FEKATEYFQKAVDED--PNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCcHHHHHHHHH
Confidence 678888888877654 999999988875
No 465
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.65 E-value=3.1e+02 Score=23.80 Aligned_cols=77 Identities=10% Similarity=0.135 Sum_probs=52.9
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---C----------CcCHhhHHHHHHHHHhcCCHHHHHH
Q 039342 48 EMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG---I----------LPSVMCYCMLLAVYAKSNRWDDAYG 114 (248)
Q Consensus 48 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~----------~p~~~~~~~li~~~~~~~~~~~a~~ 114 (248)
.+.+.|+..+......++... .|+...|..++++....| + .++....-.++.++. .++.+.++.
T Consensus 190 il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~ 266 (509)
T PRK14958 190 LLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLG 266 (509)
T ss_pred HHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHH
Confidence 345678888877776666554 588889998888765432 1 123334444555544 488999999
Q ss_pred HHHHHHHCCCCch
Q 039342 115 LLDEMHTNRISNI 127 (248)
Q Consensus 115 ~~~~m~~~~~~~~ 127 (248)
++++|.+.|..|.
T Consensus 267 ~~~~l~~~g~~~~ 279 (509)
T PRK14958 267 CVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHcCCCHH
Confidence 9999999998764
No 466
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=34.33 E-value=1.7e+02 Score=23.87 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=47.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHH
Q 039342 32 AFRQGGRFEEAIKAYVEMEKVRCDP-NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110 (248)
Q Consensus 32 ~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 110 (248)
-|.+.|.+++|...|..-.. +.| |.++|..-..+|.+...+..|+.=-+..... -...+.+|+|.+.-.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHHH
Confidence 47788889999988877543 345 8888888888888888877665544433321 123455666555444
Q ss_pred HHHHHHH
Q 039342 111 DAYGLLD 117 (248)
Q Consensus 111 ~a~~~~~ 117 (248)
.++....
T Consensus 176 ~~Lg~~~ 182 (536)
T KOG4648|consen 176 ESLGNNM 182 (536)
T ss_pred HHHhhHH
Confidence 4433333
No 467
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=34.11 E-value=3.9e+02 Score=24.82 Aligned_cols=28 Identities=21% Similarity=0.068 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHCCCCCCc
Q 039342 168 NALLEALWCLGLRERAARVLDEATKRGLFPEL 199 (248)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 199 (248)
...+...+..|+.+-+..++ +.|..++.
T Consensus 623 ~~~L~~Aa~~g~~~~v~~Ll----~~Gadin~ 650 (823)
T PLN03192 623 GDLLCTAAKRNDLTAMKELL----KQGLNVDS 650 (823)
T ss_pred chHHHHHHHhCCHHHHHHHH----HCCCCCCC
Confidence 34566667777776555554 45555543
No 468
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=33.85 E-value=53 Score=26.60 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=37.0
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHH
Q 039342 67 VYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGL 115 (248)
Q Consensus 67 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~ 115 (248)
-|.+.|++++|...|..-... .| +.+++..-..+|.+...+..|+.-
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEED 153 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 578899999999999876653 56 888888888899888777655443
No 469
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=33.50 E-value=2.2e+02 Score=21.84 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=71.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHC--CC-Cc
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV----RCDPNERTLEAVLSVYCFAGL--VDESKEQFQEIKSS--GI-LP 91 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~--~~-~p 91 (248)
|-...-..++...-+....++..++++.+... |..|+......++.+++..|. +..+..++++..+. .+ .+
T Consensus 9 P~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GSkS~SH~~~~lery~~~Lk~l~~~ 88 (253)
T PF09090_consen 9 PFHALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGSKSFSHVLSALERYKEVLKELEAE 88 (253)
T ss_dssp TTHHHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTTTSHHHHHHHHHHTHHHHHHH-TS
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccC
Confidence 55555666666666666677777777766433 345677888999999988774 44444444433221 12 34
Q ss_pred CHhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCchHHhHHHHhcc
Q 039342 92 SVMCYCMLLAVYAK--SNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137 (248)
Q Consensus 92 ~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~ 137 (248)
+...-..+|.+..+ ..+..-+.-+++.|...++.....+...++..
T Consensus 89 ~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii~~~~Vv~w~f~~ 136 (253)
T PF09090_consen 89 SEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGIISPSAVVNWVFSP 136 (253)
T ss_dssp SHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-HHHHHHHHTSG
T ss_pred ChHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCCCHHHHHHHHcCc
Confidence 55556666666654 46788899999999999988877777777654
No 470
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.38 E-value=3.1e+02 Score=23.49 Aligned_cols=100 Identities=8% Similarity=-0.047 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHcCC------------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039342 1 GGLYKECQAILSRMSESGV------------ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~------------~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 68 (248)
+|++..|...++.+....- .......-.-+.-..+.++++.|+.++.+|...|..|....-..+..++
T Consensus 209 ~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~ 288 (472)
T PRK14962 209 SGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLV 288 (472)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q ss_pred HhcCChh------HHHHHHHHHHHCCCCcCHhhHHHHH
Q 039342 69 CFAGLVD------ESKEQFQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 69 ~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~li 100 (248)
-..|.-+ -+..+++...+-|.+-......-++
T Consensus 289 edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~~ 326 (472)
T PRK14962 289 EDLERERANDIIQVSRQLLNILREIKFAEEKRLVCKLG 326 (472)
T ss_pred HHccCCCchHHHHHHHHHHHHHHHhCCcchHHHHHHHH
No 471
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=33.32 E-value=2e+02 Score=21.28 Aligned_cols=33 Identities=6% Similarity=0.202 Sum_probs=22.5
Q ss_pred HhhhhhhccccchHHHHHHHHHHHHHHHHHcCC
Q 039342 206 VWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238 (248)
Q Consensus 206 i~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~ 238 (248)
+|.++.+.-.+....+.+.++.++|.+.-+.|.
T Consensus 141 LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PP 173 (199)
T PF04090_consen 141 LWILLIQEEDRESELDSYQQLIERIDELVLSPP 173 (199)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 455555555555566678888888888877764
No 472
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=33.09 E-value=1.2e+02 Score=18.82 Aligned_cols=38 Identities=29% Similarity=0.446 Sum_probs=21.4
Q ss_pred cchHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCchHHH
Q 039342 142 ESNWQMVEYVFDKLNC-EGYGLGMRFYNALLEALWCLGLRERA 183 (248)
Q Consensus 142 ~~~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a 183 (248)
.|+.+.|..+++.+.. .+.. -|..+++++-..|.-+.|
T Consensus 47 ~g~~~aa~~Ll~~L~~~r~~~----wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 47 KGNIAAAEELLDRLERCDKPG----WFQAFLDALRRTGNDDLA 85 (88)
T ss_pred cChHHHHHHHHHHHHHhccCC----cHHHHHHHHHHcCCccHH
Confidence 3556666666666665 3322 256666666666654443
No 473
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=33.09 E-value=48 Score=27.58 Aligned_cols=58 Identities=7% Similarity=0.111 Sum_probs=40.0
Q ss_pred HhHHHHHH--HHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 24 DSFNAVIE--AFRQGGRFEEAIKAYVEMEKVRC---DPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 24 ~~y~~li~--~~~~~~~~~~a~~~~~~m~~~~~---~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
.+|...+. -+|+.|+......+|+...+.|- ..-+.+|+.|-++|.-.+++++|.++.
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 34444443 37888999999999988887763 223345666667777778888887764
No 474
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=33.07 E-value=1.5e+02 Score=19.60 Aligned_cols=80 Identities=16% Similarity=-0.010 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 039342 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116 (248)
Q Consensus 37 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 116 (248)
...++|..+.+.+...+- -....--+-+..+.+.|+++.| +.. -.....||...|-+|-. .+.|--+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~-~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLL-PQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHH-HTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHh-cccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 356777777777766543 2222222345566677777777 111 12223566666655433 4667777777777
Q ss_pred HHHHHCC
Q 039342 117 DEMHTNR 123 (248)
Q Consensus 117 ~~m~~~~ 123 (248)
.++..+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7775555
No 475
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.04 E-value=2.3e+02 Score=21.88 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=21.9
Q ss_pred chHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039342 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174 (248)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 174 (248)
|.......++..+ ..++++.|.+++.++-+.|+.|.. ..+++.+.+
T Consensus 237 PhP~~v~~ml~~~--~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 237 PHPLLVKKMLQAC--LKRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred CChHHHHHHHHHH--HhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 4444444454431 233455566666665555655532 233444443
No 476
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=32.71 E-value=1.4e+02 Score=19.26 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=10.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 039342 64 VLSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 64 ll~~~~~~g~~~~a~~~~~~m~ 85 (248)
++.-|...+++++|.+-+.++.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhC
Confidence 3444444445555544444443
No 477
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.53 E-value=3.3e+02 Score=23.48 Aligned_cols=86 Identities=5% Similarity=-0.014 Sum_probs=53.2
Q ss_pred HHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CC----------cCHhhHHHHHHHHHhcC
Q 039342 42 AIKAYVEM-EKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG---IL----------PSVMCYCMLLAVYAKSN 107 (248)
Q Consensus 42 a~~~~~~m-~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~----------p~~~~~~~li~~~~~~~ 107 (248)
..+.++.. ...|+..+......+... ..|+...|..++++....+ +. ++...+..++.+....+
T Consensus 185 i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d 262 (484)
T PRK14956 185 LQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPD 262 (484)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCC
Confidence 33444443 446777777766555543 3488888888887754321 11 23334455555555555
Q ss_pred CHHHHHHHHHHHHHCCCCchHH
Q 039342 108 RWDDAYGLLDEMHTNRISNIHQ 129 (248)
Q Consensus 108 ~~~~a~~~~~~m~~~~~~~~~~ 129 (248)
....|+.++.+|.+.|..|...
T Consensus 263 ~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 263 NHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred cHHHHHHHHHHHHHcCCCHHHH
Confidence 5678999999999988776543
No 478
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.43 E-value=1.4e+02 Score=19.05 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=17.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 93 VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
..|++.|+.++.+.+.-..|..+-+.+.+.|
T Consensus 64 ~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 64 KASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred CcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 3456666666666665555555555554444
No 479
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=32.15 E-value=1.6e+02 Score=23.48 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=24.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 99 LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
+.....+...++..+++++...+.. |...+-..+|.+ + +...+...+.++.+.+.|
T Consensus 180 l~~~vrr~~t~e~~Le~l~~ak~~~--pgi~~~TgiIVG-l--GETeee~~etl~~Lrelg 235 (302)
T TIGR00510 180 LTPFVRPGATYRWSLKLLERAKEYL--PNLPTKSGIMVG-L--GETNEEIKQTLKDLRDHG 235 (302)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhC--CCCeecceEEEE-C--CCCHHHHHHHHHHHHhcC
Confidence 3333334445555555555555442 333334444444 2 223344444445444443
No 480
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=31.94 E-value=49 Score=22.24 Aligned_cols=27 Identities=11% Similarity=0.163 Sum_probs=18.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 039342 35 QGGRFEEAIKAYVEMEKVRCDPNERTL 61 (248)
Q Consensus 35 ~~~~~~~a~~~~~~m~~~~~~p~~~t~ 61 (248)
-.|+...|..+++.++.+|+.|....|
T Consensus 9 L~G~~~ra~riL~~L~~Eg~ep~~lLw 35 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEGVEPPILLW 35 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT--HHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCccHHHHHH
Confidence 357788888888888888887766555
No 481
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=31.36 E-value=5e+02 Score=25.26 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=78.1
Q ss_pred HhcCCHHHHHHHHHHHHHc-----CCCCCH--HHHHHHHHHHHhcC--ChhHHHHHHHHHHHCC--------CCcCHhhH
Q 039342 34 RQGGRFEEAIKAYVEMEKV-----RCDPNE--RTLEAVLSVYCFAG--LVDESKEQFQEIKSSG--------ILPSVMCY 96 (248)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~-----~~~p~~--~t~~~ll~~~~~~g--~~~~a~~~~~~m~~~~--------~~p~~~~~ 96 (248)
..+.|+.+-+-+++++++. .++.|. .-|...+....++| -++++.++.+ +.| ..|+...+
T Consensus 862 ~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~---kh~Ly~~aL~ly~~~~e~~ 938 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIK---KHGLYDEALALYKPDSEKQ 938 (1265)
T ss_pred HhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHH---hcccchhhhheeccCHHHH
Confidence 3456777777777777632 112221 22334444445555 4444444432 222 24666666
Q ss_pred HHHHHHHH----hcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039342 97 CMLLAVYA----KSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172 (248)
Q Consensus 97 ~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 172 (248)
..+..+|+ ....+++|--.|+..-+ ....+.+ +...++|+.+..+..++....-. -..+-..|+.
T Consensus 939 k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a-~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s 1007 (1265)
T KOG1920|consen 939 KVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKA-YKECGDWREALSLAAQLSEGKDE-LVILAEELVS 1007 (1265)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHH-HHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHH
Confidence 66665554 45667777666664311 1122333 66778888888877766433111 0111245667
Q ss_pred HHHhcCchHHHHHHHHHHHH
Q 039342 173 ALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~ 192 (248)
-+...++.-+|-++..+...
T Consensus 1008 ~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHcccchhHHHHHHHHhc
Confidence 77777887777777766543
No 482
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.27 E-value=3.5e+02 Score=23.43 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=56.3
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------------cCHhhHHHHHHHHHhc
Q 039342 40 EEAIKAYVE-MEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGIL------------PSVMCYCMLLAVYAKS 106 (248)
Q Consensus 40 ~~a~~~~~~-m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~------------p~~~~~~~li~~~~~~ 106 (248)
++..+.+.. +.+.|+..+......++... .|++..+...++.+...+-. +.......+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 444445544 35678888877777666655 48888888888876544311 1222344455555 55
Q ss_pred CCHHHHHHHHHHHHHCCCCch
Q 039342 107 NRWDDAYGLLDEMHTNRISNI 127 (248)
Q Consensus 107 ~~~~~a~~~~~~m~~~~~~~~ 127 (248)
++.++|+.+++++...|..|.
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 899999999999999986654
No 483
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=31.09 E-value=1e+02 Score=17.12 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=12.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 039342 32 AFRQGGRFEEAIKAYVEMEKVRCDPNERT 60 (248)
Q Consensus 32 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 60 (248)
++.+.|+++.|.+..+.+.+. .|+..-
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~~--eP~N~Q 36 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLEI--EPDNRQ 36 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHHH--TTS-HH
T ss_pred HHHHhhhHHHHHHHHHHHHhh--CCCcHH
Confidence 445555555555555555443 444433
No 484
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.08 E-value=4.2e+02 Score=24.34 Aligned_cols=155 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCc---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccc
Q 039342 65 LSVYCFAGLVDESKEQFQEIKSSGILP---SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD 141 (248)
Q Consensus 65 l~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~ 141 (248)
|+-+.+.+.+++|.++-+..... .| ........|..+.-.|+.++|-...-.|......-+......+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~---- 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAEL---- 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccc----
Q ss_pred cchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhh------------
Q 039342 142 ESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV------------ 209 (248)
Q Consensus 142 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~------------ 209 (248)
+....++.-+-....+.+...|..++..+.. .+...-.++..+ ++++...-...+.+.
T Consensus 437 ----~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~-----Wp~~Lys~l~iisa~~~q~~q~Se~~~ 506 (846)
T KOG2066|consen 437 ----DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKE-----WPGHLYSVLTIISATEPQIKQNSESTA 506 (846)
T ss_pred ----cccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHh-----CChhhhhhhHHHhhcchHHHhhccchh
Q ss_pred ----hhhccccchHHHHHHHHHHHHHHHHH
Q 039342 210 ----DVHRMWEGGAYTAISVWLNKMYEMFM 235 (248)
Q Consensus 210 ----~~~~~~~~g~~~~~~~~~~~m~~~~~ 235 (248)
++.-|...+++..|...+-..++.-+
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccChHH
No 485
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.71 E-value=3.7e+02 Score=23.50 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHH
Q 039342 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYA 104 (248)
Q Consensus 26 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 104 (248)
...++.-|.+.+++++|..++..|.=.-.. ---...+.+.+...+..--++.+..++.....=..|....-.....-|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~ 490 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYR 490 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHH
Confidence 446888999999999999999998533211 1113334455566666655666666666665444444433333333333
Q ss_pred hcCCHHHHHHHHHHHH
Q 039342 105 KSNRWDDAYGLLDEMH 120 (248)
Q Consensus 105 ~~~~~~~a~~~~~~m~ 120 (248)
. .=.+-|.++|..|.
T Consensus 491 d-~V~~~aRRfFhhLL 505 (545)
T PF11768_consen 491 D-PVSDLARRFFHHLL 505 (545)
T ss_pred H-HHHHHHHHHHHHHH
Confidence 2 11233555555554
No 486
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=30.67 E-value=3.7e+02 Score=23.54 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=29.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG 88 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 88 (248)
....|+.|++.+... +.+.-.++++++.. . + ...+..++++....|-.....-+.+.+....
T Consensus 309 ~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 309 AAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred hHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 344555555544333 34444455555432 1 1 3455555555555555555555554444433
No 487
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=30.55 E-value=3.9e+02 Score=24.19 Aligned_cols=69 Identities=13% Similarity=0.130 Sum_probs=44.6
Q ss_pred cCCCCCHHhHHHHHHHHHhcCC----HHHHHHHHHHHHH----cCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHH
Q 039342 17 SGVARNSDSFNAVIEAFRQGGR----FEEAIKAYVEMEK----VRCDPNERTL---EAVLSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 17 ~g~~~~~~~y~~li~~~~~~~~----~~~a~~~~~~m~~----~~~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~m~ 85 (248)
.|.+.|+..|..|+.++....+ .+++.++++.+++ .|+.+..+.- -.+..-|...|+.+........+.
T Consensus 211 dgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L~ 290 (677)
T PF05664_consen 211 DGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQLQ 290 (677)
T ss_pred cCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3677899999999999887543 3666667666654 3776544221 245677888887555444444443
No 488
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=30.32 E-value=4.6e+02 Score=24.50 Aligned_cols=200 Identities=12% Similarity=0.081 Sum_probs=106.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHhcCChhHHHHHHHHHHHC----CCCcCHhhHHHHHHH
Q 039342 35 QGGRFEEAIKAYVEMEKVRCDPNE-------RTLEAVLS-VYCFAGLVDESKEQFQEIKSS----GILPSVMCYCMLLAV 102 (248)
Q Consensus 35 ~~~~~~~a~~~~~~m~~~~~~p~~-------~t~~~ll~-~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~ 102 (248)
-..++.+|..++.+....--.|+. ..++.+=. .....|+++++.++-+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 457889999988887544222222 12332211 223467888888887766532 344567778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC---chHHhHHHHhc-ccccccc--hHHHHHHHHHHHHhc--CCC----CCHHHHHHH
Q 039342 103 YAKSNRWDDAYGLLDEMHTNRIS---NIHQVTGQMIK-GEFDDES--NWQMVEYVFDKLNCE--GYG----LGMRFYNAL 170 (248)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~~l~-~~~~~~~--~~~~a~~~~~~m~~~--~~~----p~~~~~~~l 170 (248)
..-.|+.++|..+.++-.+.... +.-..+..+.. ..+...| .+...+..|...... +-+ +-.-++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 88899999999988776544211 11222222211 1133334 223333333333222 111 123344445
Q ss_pred HHHHHhcCchHHHHHHHHHHHH--CCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCC
Q 039342 171 LEALWCLGLRERAARVLDEATK--RGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238 (248)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~ 238 (248)
+.++.+ .+.+..-...-.+ ....|........+ .++.......|+.+++...++++......+.
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~-~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLAL-SMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 555554 3322222221111 11223222222222 3445777889999999999999999888875
No 489
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.31 E-value=2.8e+02 Score=22.10 Aligned_cols=23 Identities=4% Similarity=-0.133 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCchHHHHHHHHH
Q 039342 167 YNALLEALWCLGLRERAARVLDE 189 (248)
Q Consensus 167 ~~~li~~~~~~g~~~~a~~~~~~ 189 (248)
+-.+-..|+..++.+.+.+..++
T Consensus 118 ~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 118 DRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHH
Confidence 33344444444444444444433
No 490
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.27 E-value=2.3e+02 Score=21.03 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=77.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV--LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l--l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 100 (248)
...|..++.... .+.+ +.......+....-+-...++..| -..+...|++++|..-++..... |....+..++
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 446777777665 3333 555666666655433333444433 45678888888888888876643 3444444444
Q ss_pred H-----HHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 101 A-----VYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 101 ~-----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
. .....|..|+|+..++...+.+..+.. ..+---.+...|+-+.|..-|+.-.+.+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~---~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAAIV---AELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHHHH---HHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3 445678888888888877665543322 2222222344566677777777776664
No 491
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=30.24 E-value=59 Score=25.34 Aligned_cols=51 Identities=16% Similarity=0.310 Sum_probs=41.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 039342 35 QGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGI 89 (248)
Q Consensus 35 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 89 (248)
...+++..+.+++..++. .|+..|=+.+|-+++. ..++..++++.+++.|+
T Consensus 192 p~A~Y~~SL~~L~~~k~~--~P~i~TKSgiMlGLGE--t~~Ev~e~m~DLr~~gv 242 (306)
T COG0320 192 PGATYERSLSLLERAKEL--GPDIPTKSGLMVGLGE--TDEEVIEVMDDLRSAGV 242 (306)
T ss_pred CCCcHHHHHHHHHHHHHh--CCCcccccceeeecCC--cHHHHHHHHHHHHHcCC
Confidence 445789999999998876 5888888888888764 46788899999998875
No 492
>COG5210 GTPase-activating protein [General function prediction only]
Probab=30.20 E-value=3.6e+02 Score=23.22 Aligned_cols=61 Identities=7% Similarity=-0.057 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 42 AIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 42 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
--+++..|.+.|+.+...++..++..+.+.-..+-+..+++.+--.|..--...+-+++..
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~ 421 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKL 421 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3468888999999999999999999999999999999999998877655444444444333
No 493
>PRK12928 lipoyl synthase; Provisional
Probab=29.88 E-value=2e+02 Score=22.72 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=32.3
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCC
Q 039342 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG 194 (248)
Q Consensus 141 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 194 (248)
....++...++++.+.+.| |+..+-..+|-++ ....++..+.++.+.+.+
T Consensus 183 r~~t~e~~le~l~~ak~~g--p~i~~~s~iIvG~--GET~ed~~etl~~Lrel~ 232 (290)
T PRK12928 183 RGADYQRSLDLLARAKELA--PDIPTKSGLMLGL--GETEDEVIETLRDLRAVG 232 (290)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCceecccEEEeC--CCCHHHHHHHHHHHHhcC
Confidence 3455677777777777765 4455566666676 445667777777777654
No 494
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=29.57 E-value=79 Score=21.89 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=29.9
Q ss_pred HHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHc
Q 039342 185 RVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMM 236 (248)
Q Consensus 185 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~ 236 (248)
..+.+|.+.| ..|..||..|. -.+++|.|.....+...+.++++.
T Consensus 104 ~~Lr~lrd~g-kIdk~~YR~lY------~~aKGg~fk~~~~L~~~i~~~~~~ 148 (150)
T COG2147 104 RELRKLRDDG-KIDKHTYRKLY------RMAKGGAFKSKSHLKSYIEEAKLL 148 (150)
T ss_pred HHHHHHHHcC-CcCHHHHHHHH------HHHcCCccccHHHHHHHHHHhccc
Confidence 3566666665 66777777765 345677777777777777776654
No 495
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=29.47 E-value=1e+02 Score=16.77 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=17.4
Q ss_pred HHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 172 EALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
+-+...|--.++..+.-++.+.|+.|.
T Consensus 12 S~lLntgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 12 SDLLNTGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred HHHHcCCCCHHHHHHHHHHHHCCCCHH
Confidence 334445656667777777777777774
No 496
>PRK12928 lipoyl synthase; Provisional
Probab=29.31 E-value=1.6e+02 Score=23.29 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHc
Q 039342 168 NALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMM 236 (248)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~ 236 (248)
..+.....+...+++..++++.+++.| |+..+-+.+| -|+ .-..++..+.++.+++.++.
T Consensus 175 ~~vl~~m~r~~t~e~~le~l~~ak~~g--p~i~~~s~iI-----vG~--GET~ed~~etl~~Lrel~~d 234 (290)
T PRK12928 175 PRLQKAVRRGADYQRSLDLLARAKELA--PDIPTKSGLM-----LGL--GETEDEVIETLRDLRAVGCD 234 (290)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhC--CCceecccEE-----EeC--CCCHHHHHHHHHHHHhcCCC
Confidence 456666666778899999999988865 5555556666 666 34556677778888776553
No 497
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=29.02 E-value=1.2e+02 Score=18.80 Aligned_cols=41 Identities=12% Similarity=-0.026 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 039342 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116 (248)
Q Consensus 74 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 116 (248)
.+.+.+++...++.. ....|...|+.++.+.|.-+-|..+|
T Consensus 46 ~eq~~~mL~~W~~r~--g~~AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 46 KMQAKQLLVAWQDRE--GSQATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred HHHHHHHHHHHHHhc--CccccHHHHHHHHHHcCcHHHHHhhC
Confidence 455555555555431 13356667777777777666655543
No 498
>PHA03100 ankyrin repeat protein; Provisional
Probab=28.95 E-value=3.5e+02 Score=22.76 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=5.6
Q ss_pred HHHHHHHcCCCCC
Q 039342 10 ILSRMSESGVARN 22 (248)
Q Consensus 10 ~~~~m~~~g~~~~ 22 (248)
+++.+.+.|..|+
T Consensus 50 ivk~Ll~~g~~~~ 62 (480)
T PHA03100 50 VVKILLDNGADIN 62 (480)
T ss_pred HHHHHHHcCCCCC
Confidence 3444444454443
No 499
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.54 E-value=2.6e+02 Score=21.08 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=64.5
Q ss_pred HCCCCcCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCC
Q 039342 86 SSGILPSVMCYCMLLAVYA--KSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG 163 (248)
Q Consensus 86 ~~~~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 163 (248)
..++++ .|...++++- .+++++.|.+.+-. ..+.|+.. ..++.. ....++.+.|..+++...-....
T Consensus 72 ~f~ip~---~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~~--~~Il~~-L~~~~~~~lAL~y~~~~~p~l~s-- 140 (226)
T PF13934_consen 72 AFGIPP---KYIKFIQGFWLLDHGDFEEALELLSH---PSLIPWFP--DKILQA-LLRRGDPKLALRYLRAVGPPLSS-- 140 (226)
T ss_pred HhCCCH---HHHHHHHHHHHhChHhHHHHHHHhCC---CCCCcccH--HHHHHH-HHHCCChhHHHHHHHhcCCCCCC--
Confidence 445544 5666667665 45677788777742 22323211 123333 33357778888887764332222
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHH
Q 039342 164 MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAI 223 (248)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~ 223 (248)
...-..++.. ..++.+.+|..+-+...+..- ...+..++..+.. ...+.+..++.
T Consensus 141 ~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~---~~l~e~l~~~~~~-~~~~~~~~~~L 195 (226)
T PF13934_consen 141 PEALTLYFVA-LANGLVTEAFSFQRSYPDELR---RRLFEQLLEHCLE-ECARSGRLDEL 195 (226)
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHhCchhhh---HHHHHHHHHHHHH-HhhhhhHHHHH
Confidence 2222333334 667889999888776654211 3345555544432 22256655544
No 500
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=28.43 E-value=2.6e+02 Score=21.03 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=40.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-HhhHHHHHHHHHhc
Q 039342 33 FRQGGRFEEAIKAYVEMEKVRCDPNER-----TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPS-VMCYCMLLAVYAKS 106 (248)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~~~p~~~-----t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 106 (248)
+.++|++++|.+-|...... +++... .|..--.+..+.+.++.|.+--....+.+ |+ .....--..+|-+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 45566666666666665543 222221 12222234455556666555554444432 21 11111112244555
Q ss_pred CCHHHHHHHHHHHHHC
Q 039342 107 NRWDDAYGLLDEMHTN 122 (248)
Q Consensus 107 ~~~~~a~~~~~~m~~~ 122 (248)
..++.|+.=|+++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 5566666666665544
Done!