Query 039342
Match_columns 248
No_of_seqs 313 out of 1570
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 14:44:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.3E-40 7.7E-45 273.0 21.3 207 2-209 3-220 (501)
2 4g26_A Pentatricopeptide repea 100.0 8.5E-37 2.9E-41 251.7 21.8 176 1-177 39-223 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 3.5E-24 1.2E-28 183.5 14.0 150 23-178 127-286 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 2.9E-23 1E-27 177.9 6.7 137 57-198 126-265 (1134)
5 2xpi_A Anaphase-promoting comp 99.9 1.4E-20 4.7E-25 158.9 22.1 221 2-233 319-545 (597)
6 2xpi_A Anaphase-promoting comp 99.9 4.7E-20 1.6E-24 155.6 24.9 225 2-239 353-583 (597)
7 1w3b_A UDP-N-acetylglucosamine 99.7 6.9E-15 2.4E-19 117.7 23.7 216 2-232 149-367 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.7 1.5E-14 5.3E-19 115.7 23.0 185 2-192 81-265 (388)
9 3mkr_A Coatomer subunit epsilo 99.7 1.5E-14 5.1E-19 111.6 20.6 216 2-239 48-268 (291)
10 2y4t_A DNAJ homolog subfamily 99.7 2.5E-14 8.6E-19 116.4 22.4 227 1-238 39-289 (450)
11 2y4t_A DNAJ homolog subfamily 99.7 3.2E-14 1.1E-18 115.8 22.7 115 2-120 74-204 (450)
12 4eqf_A PEX5-related protein; a 99.6 3.3E-14 1.1E-18 112.8 18.1 222 2-236 79-313 (365)
13 1fch_A Peroxisomal targeting s 99.6 1.9E-13 6.6E-18 108.2 21.6 222 2-235 78-316 (368)
14 3hym_B Cell division cycle pro 99.6 2.9E-13 1E-17 105.4 22.3 222 1-233 35-265 (330)
15 3uq3_A Heat shock protein STI1 99.6 5.9E-13 2E-17 100.0 20.7 213 1-234 18-237 (258)
16 3cv0_A Peroxisome targeting si 99.6 5.3E-13 1.8E-17 103.7 20.6 220 1-234 34-270 (327)
17 3hym_B Cell division cycle pro 99.6 9.7E-13 3.3E-17 102.4 21.6 220 2-232 70-298 (330)
18 2vq2_A PILW, putative fimbrial 99.6 1.6E-12 5.4E-17 95.6 21.4 204 22-233 7-211 (225)
19 2ho1_A Type 4 fimbrial biogene 99.6 1.7E-12 5.7E-17 97.5 21.8 201 23-233 37-238 (252)
20 3mkr_A Coatomer subunit epsilo 99.6 2E-13 7E-18 105.2 16.8 219 1-240 12-234 (291)
21 2ho1_A Type 4 fimbrial biogene 99.6 2.1E-12 7.2E-17 96.9 22.0 193 1-201 50-244 (252)
22 2vq2_A PILW, putative fimbrial 99.6 4.4E-12 1.5E-16 93.2 23.0 198 1-204 21-220 (225)
23 1fch_A Peroxisomal targeting s 99.6 6.9E-13 2.4E-17 105.0 19.5 222 2-233 39-280 (368)
24 2pl2_A Hypothetical conserved 99.6 7.5E-13 2.6E-17 97.6 18.4 199 20-231 2-212 (217)
25 1b89_A Protein (clathrin heavy 99.5 2E-15 6.9E-20 120.5 4.3 191 2-229 17-232 (449)
26 2gw1_A Mitochondrial precursor 99.5 2.2E-12 7.7E-17 106.4 21.7 85 1-88 19-103 (514)
27 3ieg_A DNAJ homolog subfamily 99.5 1.1E-11 3.9E-16 97.3 24.3 226 1-233 16-263 (359)
28 4eqf_A PEX5-related protein; a 99.5 3E-12 1E-16 101.4 21.1 201 22-233 64-276 (365)
29 3ieg_A DNAJ homolog subfamily 99.5 1.5E-11 5E-16 96.6 23.7 151 2-158 51-217 (359)
30 2gw1_A Mitochondrial precursor 99.5 2.1E-12 7.2E-17 106.6 19.4 221 2-233 203-444 (514)
31 3cv0_A Peroxisome targeting si 99.5 1.1E-12 3.8E-17 101.9 15.9 224 1-232 68-314 (327)
32 2q7f_A YRRB protein; TPR, prot 99.5 4.4E-12 1.5E-16 94.4 18.5 185 2-192 37-221 (243)
33 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.8E-12 2E-16 95.6 19.2 223 2-233 19-244 (275)
34 2pl2_A Hypothetical conserved 99.5 9.3E-12 3.2E-16 91.7 18.2 183 1-191 18-212 (217)
35 1ouv_A Conserved hypothetical 99.5 1.9E-10 6.4E-15 87.5 25.7 214 1-234 19-252 (273)
36 3fp2_A TPR repeat-containing p 99.5 1.2E-11 3.9E-16 102.9 19.9 221 2-233 216-457 (537)
37 3u4t_A TPR repeat-containing p 99.4 2E-11 6.9E-16 92.5 19.4 231 1-239 16-254 (272)
38 2q7f_A YRRB protein; TPR, prot 99.4 4.4E-12 1.5E-16 94.4 15.2 202 21-233 21-222 (243)
39 2ond_A Cleavage stimulation fa 99.4 1.4E-10 4.6E-15 90.1 24.1 221 5-233 33-270 (308)
40 3fp2_A TPR repeat-containing p 99.4 2.8E-11 9.5E-16 100.6 20.4 219 2-233 257-491 (537)
41 3nf1_A KLC 1, kinesin light ch 99.4 1.6E-11 5.3E-16 94.7 17.0 212 22-233 26-307 (311)
42 3nf1_A KLC 1, kinesin light ch 99.4 2E-11 6.9E-16 94.1 17.0 192 1-192 40-306 (311)
43 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.8E-11 1.3E-15 91.0 17.1 210 2-227 57-269 (275)
44 3uq3_A Heat shock protein STI1 99.4 7.6E-11 2.6E-15 88.3 17.5 193 22-233 4-202 (258)
45 4abn_A Tetratricopeptide repea 99.4 5.9E-11 2E-15 97.6 18.2 214 4-230 84-318 (474)
46 3vtx_A MAMA; tetratricopeptide 99.4 3.5E-10 1.2E-14 80.7 20.1 171 21-198 3-173 (184)
47 3edt_B KLC 2, kinesin light ch 99.4 3.3E-11 1.1E-15 91.5 14.9 156 2-157 15-197 (283)
48 2h6f_A Protein farnesyltransfe 99.3 4.5E-10 1.5E-14 89.7 20.4 214 2-230 111-344 (382)
49 3as5_A MAMA; tetratricopeptide 99.3 4.9E-10 1.7E-14 79.4 17.5 165 23-192 8-172 (186)
50 2ond_A Cleavage stimulation fa 99.3 2.4E-09 8.1E-14 83.0 22.2 184 4-193 80-270 (308)
51 1ouv_A Conserved hypothetical 99.3 5.8E-09 2E-13 79.2 23.5 177 2-194 56-252 (273)
52 1b89_A Protein (clathrin heavy 99.3 6.1E-11 2.1E-15 94.9 12.4 160 2-191 75-234 (449)
53 2ooe_A Cleavage stimulation fa 99.2 3.7E-09 1.3E-13 88.1 22.6 221 5-233 255-492 (530)
54 4a1s_A PINS, partner of inscut 99.2 9.3E-11 3.2E-15 94.2 12.1 233 1-234 61-333 (411)
55 3vtx_A MAMA; tetratricopeptide 99.2 1.5E-09 5.1E-14 77.4 17.1 167 56-233 3-170 (184)
56 3ro2_A PINS homolog, G-protein 99.2 4.6E-10 1.6E-14 87.0 14.1 233 1-234 18-293 (338)
57 4abn_A Tetratricopeptide repea 99.2 7.2E-10 2.5E-14 91.2 14.7 182 2-190 116-318 (474)
58 3edt_B KLC 2, kinesin light ch 99.2 7.7E-10 2.6E-14 83.8 13.8 159 34-192 12-197 (283)
59 3as5_A MAMA; tetratricopeptide 99.2 3E-09 1E-13 75.3 16.1 151 2-158 22-173 (186)
60 3sf4_A G-protein-signaling mod 99.2 1.2E-09 4.1E-14 87.3 15.1 234 1-235 22-298 (406)
61 3u4t_A TPR repeat-containing p 99.2 4.4E-09 1.5E-13 79.5 17.4 190 2-198 51-253 (272)
62 4gyw_A UDP-N-acetylglucosamine 99.2 2.5E-08 8.6E-13 85.8 23.7 164 22-191 8-172 (723)
63 4a1s_A PINS, partner of inscut 99.1 3.8E-10 1.3E-14 90.6 11.3 232 2-233 100-372 (411)
64 3ulq_A Response regulator aspa 99.1 4.8E-09 1.6E-13 83.7 17.1 230 1-237 116-372 (383)
65 3ro2_A PINS homolog, G-protein 99.1 7.8E-10 2.7E-14 85.8 11.2 232 2-233 57-332 (338)
66 4i17_A Hypothetical protein; T 99.1 3.3E-08 1.1E-12 72.9 19.5 152 22-178 6-167 (228)
67 2fo7_A Synthetic consensus TPR 99.1 1.8E-08 6.3E-13 67.1 15.8 130 25-158 3-132 (136)
68 2h6f_A Protein farnesyltransfe 99.1 1.4E-08 4.7E-13 81.1 17.4 196 23-230 97-302 (382)
69 2ooe_A Cleavage stimulation fa 99.1 4.7E-08 1.6E-12 81.4 21.3 182 6-193 304-492 (530)
70 3sf4_A G-protein-signaling mod 99.1 2.6E-09 8.8E-14 85.3 13.0 233 2-234 61-337 (406)
71 2xm6_A Protein corresponding t 99.0 4.6E-07 1.6E-11 74.7 26.1 111 3-122 94-216 (490)
72 2fo7_A Synthetic consensus TPR 99.0 2.3E-08 8E-13 66.6 15.3 129 60-192 3-131 (136)
73 2xm6_A Protein corresponding t 99.0 5.5E-07 1.9E-11 74.2 26.5 181 2-194 129-326 (490)
74 3mv2_B Coatomer subunit epsilo 99.0 5.9E-08 2E-12 74.5 18.0 146 42-192 85-239 (310)
75 4i17_A Hypothetical protein; T 99.0 1.7E-07 5.7E-12 69.0 18.6 138 56-198 5-149 (228)
76 1hz4_A MALT regulatory protein 99.0 2E-07 6.7E-12 73.9 20.1 232 1-235 27-284 (373)
77 3q15_A PSP28, response regulat 98.9 6.9E-08 2.4E-12 76.9 17.1 225 2-233 115-365 (378)
78 3mv2_B Coatomer subunit epsilo 98.9 5.2E-08 1.8E-12 74.8 15.5 182 7-198 85-285 (310)
79 4gyw_A UDP-N-acetylglucosamine 98.9 2.8E-08 9.5E-13 85.6 15.5 165 57-233 8-174 (723)
80 1hz4_A MALT regulatory protein 98.9 9.8E-08 3.4E-12 75.6 17.2 229 2-234 67-323 (373)
81 3qky_A Outer membrane assembly 98.9 1.4E-07 4.9E-12 71.0 16.7 170 21-193 13-224 (261)
82 3ulq_A Response regulator aspa 98.9 1.1E-07 3.8E-12 75.7 15.9 188 2-192 157-367 (383)
83 1qqe_A Vesicular transport pro 98.8 4E-07 1.4E-11 69.9 17.4 167 25-192 39-227 (292)
84 2yhc_A BAMD, UPF0169 lipoprote 98.8 7.2E-07 2.5E-11 65.7 17.9 100 22-123 3-126 (225)
85 1xi4_A Clathrin heavy chain; a 98.8 4.7E-07 1.6E-11 81.6 19.4 158 2-190 1090-1247(1630)
86 3q15_A PSP28, response regulat 98.8 3.5E-07 1.2E-11 72.8 17.2 188 2-192 155-364 (378)
87 2ifu_A Gamma-SNAP; membrane fu 98.8 8.1E-07 2.8E-11 68.7 18.3 188 2-191 5-222 (307)
88 3rjv_A Putative SEL1 repeat pr 98.8 1.5E-06 5.2E-11 63.4 18.1 179 5-195 3-199 (212)
89 1qqe_A Vesicular transport pro 98.8 2.7E-07 9.2E-12 70.9 14.6 188 2-190 51-266 (292)
90 2vsy_A XCC0866; transferase, g 98.8 3.7E-07 1.3E-11 76.7 16.3 155 1-161 2-160 (568)
91 3urz_A Uncharacterized protein 98.8 6.3E-07 2.2E-11 65.2 15.4 165 26-199 7-190 (208)
92 4g1t_A Interferon-induced prot 98.8 2.3E-06 8E-11 69.8 20.4 220 2-230 152-398 (472)
93 3qky_A Outer membrane assembly 98.8 1.3E-06 4.6E-11 65.6 17.6 155 1-159 28-225 (261)
94 3qou_A Protein YBBN; thioredox 98.8 3.3E-07 1.1E-11 70.2 14.4 128 60-192 119-247 (287)
95 4e6h_A MRNA 3'-END-processing 98.8 1.9E-06 6.5E-11 73.6 20.1 225 5-239 326-574 (679)
96 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.8E-06 6E-11 62.6 16.5 88 29-121 12-99 (213)
97 2pzi_A Probable serine/threoni 98.7 2.4E-07 8.2E-12 79.6 13.6 170 1-179 404-583 (681)
98 2vsy_A XCC0866; transferase, g 98.7 5.9E-07 2E-11 75.4 15.5 153 36-193 2-157 (568)
99 2r5s_A Uncharacterized protein 98.7 2E-07 6.7E-12 65.9 10.7 161 25-190 8-170 (176)
100 4g1t_A Interferon-induced prot 98.7 1.3E-06 4.5E-11 71.3 16.5 34 198-236 429-462 (472)
101 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.9E-06 1E-10 61.4 16.8 117 2-123 20-151 (213)
102 1xi4_A Clathrin heavy chain; a 98.6 3E-06 1E-10 76.5 18.8 184 2-229 1063-1246(1630)
103 3u3w_A Transcriptional activat 98.6 7.8E-06 2.7E-10 62.6 19.3 178 64-242 81-275 (293)
104 3qou_A Protein YBBN; thioredox 98.6 1E-06 3.5E-11 67.5 13.6 167 20-191 114-282 (287)
105 3u3w_A Transcriptional activat 98.6 7.8E-06 2.7E-10 62.6 18.5 165 28-192 80-265 (293)
106 4ga2_A E3 SUMO-protein ligase 98.6 4.9E-07 1.7E-11 62.2 10.4 123 2-131 11-136 (150)
107 2pzi_A Probable serine/threoni 98.6 1.2E-06 4.2E-11 75.2 15.0 157 34-198 402-566 (681)
108 1na0_A Designed protein CTPR3; 98.6 1.9E-06 6.6E-11 56.3 12.8 99 23-123 9-107 (125)
109 3urz_A Uncharacterized protein 98.6 4.2E-06 1.4E-10 60.8 15.6 159 1-169 17-195 (208)
110 3gw4_A Uncharacterized protein 98.6 1.5E-06 5E-11 62.4 13.1 158 2-192 6-175 (203)
111 2yhc_A BAMD, UPF0169 lipoprote 98.6 8E-06 2.7E-10 60.0 17.1 173 57-233 3-213 (225)
112 1a17_A Serine/threonine protei 98.6 7.1E-06 2.4E-10 56.7 16.0 99 23-123 13-111 (166)
113 2c2l_A CHIP, carboxy terminus 98.6 6.4E-06 2.2E-10 62.8 16.3 192 21-233 2-199 (281)
114 3rjv_A Putative SEL1 repeat pr 98.6 1.9E-05 6.4E-10 57.5 18.1 185 41-235 4-199 (212)
115 3gw4_A Uncharacterized protein 98.5 1.8E-06 6.1E-11 61.9 12.2 171 34-237 3-180 (203)
116 2e2e_A Formate-dependent nitri 98.5 3.1E-06 1.1E-10 59.5 12.6 119 2-123 24-145 (177)
117 1a17_A Serine/threonine protei 98.5 7.4E-06 2.5E-10 56.6 14.3 117 1-120 26-144 (166)
118 2r5s_A Uncharacterized protein 98.5 1.3E-06 4.4E-11 61.7 10.4 149 1-155 19-170 (176)
119 2qfc_A PLCR protein; TPR, HTH, 98.5 3.6E-05 1.2E-09 58.8 19.1 166 25-191 77-264 (293)
120 4gco_A Protein STI-1; structur 98.5 1.1E-05 3.9E-10 53.5 14.2 109 19-131 8-117 (126)
121 3e4b_A ALGK; tetratricopeptide 98.5 0.00013 4.4E-09 59.5 22.5 212 3-233 194-421 (452)
122 3e4b_A ALGK; tetratricopeptide 98.5 7.6E-05 2.6E-09 60.9 21.1 213 4-233 161-387 (452)
123 2vgx_A Chaperone SYCD; alterna 98.4 2.7E-06 9.2E-11 58.3 10.5 112 8-122 7-118 (148)
124 2ifu_A Gamma-SNAP; membrane fu 98.4 6.2E-06 2.1E-10 63.7 13.5 189 36-231 4-222 (307)
125 2lni_A Stress-induced-phosphop 98.4 7.9E-06 2.7E-10 54.1 12.5 102 20-123 13-114 (133)
126 1na0_A Designed protein CTPR3; 98.4 1.5E-05 5.3E-10 51.8 13.7 101 1-104 22-122 (125)
127 3gyz_A Chaperone protein IPGC; 98.4 9.7E-06 3.3E-10 55.8 12.8 100 22-123 35-134 (151)
128 4e6h_A MRNA 3'-END-processing 98.4 2.1E-05 7.1E-10 67.3 16.6 198 2-206 357-581 (679)
129 2kck_A TPR repeat; tetratricop 98.4 9.5E-06 3.2E-10 51.8 11.5 100 22-123 5-107 (112)
130 2vyi_A SGTA protein; chaperone 98.4 6.5E-06 2.2E-10 54.2 11.0 101 21-123 10-110 (131)
131 1elw_A TPR1-domain of HOP; HOP 98.3 4.3E-05 1.5E-09 49.1 14.2 100 22-123 3-102 (118)
132 2qfc_A PLCR protein; TPR, HTH, 98.3 3.3E-05 1.1E-09 59.1 15.7 172 59-231 76-264 (293)
133 4ga2_A E3 SUMO-protein ligase 98.3 1.3E-06 4.3E-11 60.1 6.8 86 34-122 8-94 (150)
134 1p5q_A FKBP52, FK506-binding p 98.3 2.1E-05 7.1E-10 61.6 14.5 100 22-122 146-259 (336)
135 3q49_B STIP1 homology and U bo 98.3 3.7E-05 1.3E-09 51.3 14.0 100 21-122 7-106 (137)
136 2vyi_A SGTA protein; chaperone 98.3 2.4E-05 8.2E-10 51.4 12.9 106 1-109 25-130 (131)
137 4b4t_Q 26S proteasome regulato 98.3 7.4E-05 2.5E-09 60.1 18.0 53 139-191 145-202 (434)
138 3upv_A Heat shock protein STI1 98.3 2.8E-05 9.6E-10 51.2 12.9 99 22-122 3-101 (126)
139 1p5q_A FKBP52, FK506-binding p 98.3 3E-05 1E-09 60.7 14.6 117 2-120 161-292 (336)
140 2xcb_A PCRH, regulatory protei 98.3 3.1E-05 1.1E-09 52.4 12.9 99 22-122 17-115 (142)
141 2lni_A Stress-induced-phosphop 98.3 2.4E-05 8.2E-10 51.7 12.0 67 55-122 13-79 (133)
142 4f3v_A ESX-1 secretion system 98.3 1.8E-05 6.2E-10 59.9 12.3 189 2-198 20-240 (282)
143 2dba_A Smooth muscle cell asso 98.3 6.8E-05 2.3E-09 50.5 14.2 100 21-123 26-129 (148)
144 3dra_A Protein farnesyltransfe 98.3 0.00014 4.6E-09 56.1 17.1 222 3-232 48-286 (306)
145 3sz7_A HSC70 cochaperone (SGT) 98.3 3.8E-05 1.3E-09 53.2 13.0 101 21-123 9-109 (164)
146 1elr_A TPR2A-domain of HOP; HO 98.2 4.7E-05 1.6E-09 49.9 12.9 100 23-123 4-109 (131)
147 4gco_A Protein STI-1; structur 98.2 4.3E-05 1.5E-09 50.6 12.4 94 1-98 26-120 (126)
148 4b4t_Q 26S proteasome regulato 98.2 0.00018 6E-09 57.9 18.3 190 2-191 18-243 (434)
149 3dra_A Protein farnesyltransfe 98.2 0.00082 2.8E-08 51.7 20.7 185 3-192 84-286 (306)
150 3gyz_A Chaperone protein IPGC; 98.2 4.5E-05 1.6E-09 52.4 12.0 96 95-193 38-133 (151)
151 2e2e_A Formate-dependent nitri 98.2 2.6E-05 9E-10 54.7 10.9 122 35-193 22-144 (177)
152 4gcn_A Protein STI-1; structur 98.1 8E-05 2.7E-09 49.4 12.0 100 23-123 8-113 (127)
153 2fbn_A 70 kDa peptidylprolyl i 98.1 8.3E-05 2.8E-09 53.2 12.9 99 23-122 38-151 (198)
154 3k9i_A BH0479 protein; putativ 98.1 1.3E-05 4.5E-10 52.3 7.6 85 2-87 4-90 (117)
155 2kck_A TPR repeat; tetratricop 98.1 9.7E-05 3.3E-09 46.9 11.7 85 2-88 20-107 (112)
156 1elw_A TPR1-domain of HOP; HOP 98.1 0.00027 9.1E-09 45.2 13.6 86 1-88 17-102 (118)
157 2fbn_A 70 kDa peptidylprolyl i 98.1 0.0001 3.5E-09 52.7 12.4 119 1-121 51-185 (198)
158 3ro3_A PINS homolog, G-protein 98.1 6.4E-05 2.2E-09 51.2 10.7 139 23-192 9-157 (164)
159 2c2l_A CHIP, carboxy terminus 98.1 2.1E-05 7.1E-10 60.0 8.8 179 1-192 17-198 (281)
160 1hxi_A PEX5, peroxisome target 98.0 0.00011 3.6E-09 48.3 11.1 95 25-122 19-114 (121)
161 3n71_A Histone lysine methyltr 98.0 0.00011 3.6E-09 60.5 13.3 141 67-237 318-468 (490)
162 2vgx_A Chaperone SYCD; alterna 98.0 2.2E-05 7.6E-10 53.7 8.0 95 95-192 23-117 (148)
163 2xcb_A PCRH, regulatory protei 98.0 9.6E-05 3.3E-09 49.9 11.2 85 1-87 31-115 (142)
164 3upv_A Heat shock protein STI1 98.0 0.00024 8.2E-09 46.6 12.8 85 1-87 17-101 (126)
165 3ro3_A PINS homolog, G-protein 98.0 8E-05 2.7E-09 50.7 10.8 146 59-235 10-160 (164)
166 1wao_1 Serine/threonine protei 98.0 4.3E-05 1.5E-09 62.8 10.7 113 1-117 19-134 (477)
167 2xev_A YBGF; tetratricopeptide 98.0 0.00031 1E-08 46.1 13.0 94 27-123 6-106 (129)
168 4f3v_A ESX-1 secretion system 98.0 9.8E-05 3.4E-09 55.9 11.4 119 2-123 116-238 (282)
169 1elr_A TPR2A-domain of HOP; HO 98.0 0.00011 3.6E-09 48.2 10.3 99 1-102 17-121 (131)
170 3n71_A Histone lysine methyltr 98.0 5E-05 1.7E-09 62.4 10.2 120 2-121 323-463 (490)
171 3q49_B STIP1 homology and U bo 97.9 0.00023 7.8E-09 47.3 11.5 99 56-192 7-105 (137)
172 2xev_A YBGF; tetratricopeptide 97.9 0.00057 2E-08 44.8 13.1 84 1-87 15-105 (129)
173 2dba_A Smooth muscle cell asso 97.9 0.00044 1.5E-08 46.4 12.7 65 56-122 26-94 (148)
174 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00034 1.2E-08 48.3 12.0 100 57-159 10-109 (164)
175 4gcn_A Protein STI-1; structur 97.9 0.00027 9.2E-09 46.7 10.8 94 1-97 21-120 (127)
176 3k9i_A BH0479 protein; putativ 97.9 3.6E-05 1.2E-09 50.2 6.1 87 35-122 2-90 (117)
177 1hxi_A PEX5, peroxisome target 97.9 0.00018 6.1E-09 47.2 9.5 85 1-87 30-114 (121)
178 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00042 1.4E-08 56.6 13.6 121 23-146 268-402 (457)
179 3q7a_A Farnesyltransferase alp 97.8 0.0058 2E-07 47.8 19.2 226 3-232 69-330 (349)
180 3rkv_A Putative peptidylprolyl 97.8 0.00058 2E-08 47.0 12.4 104 23-129 11-131 (162)
181 2uy1_A Cleavage stimulation fa 97.8 0.0021 7.1E-08 53.0 17.6 205 5-234 196-414 (493)
182 3q7a_A Farnesyltransferase alp 97.8 0.0017 5.7E-08 50.8 15.4 186 3-193 104-331 (349)
183 1ihg_A Cyclophilin 40; ppiase 97.8 0.00037 1.3E-08 55.3 12.1 99 24-123 224-337 (370)
184 1wao_1 Serine/threonine protei 97.8 9.4E-05 3.2E-09 60.8 8.5 120 30-153 13-134 (477)
185 1klx_A Cysteine rich protein B 97.7 0.0027 9.4E-08 42.5 14.2 111 3-124 10-128 (138)
186 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.0007 2.4E-08 55.3 13.0 117 1-120 281-413 (457)
187 3dss_A Geranylgeranyl transfer 97.7 0.01 3.5E-07 46.1 22.7 222 5-233 47-304 (331)
188 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00026 9E-09 55.4 9.5 130 23-157 179-327 (338)
189 3rkv_A Putative peptidylprolyl 97.5 0.0015 5.1E-08 44.9 11.0 90 1-93 24-130 (162)
190 2l6j_A TPR repeat-containing p 97.5 0.00074 2.5E-08 42.8 8.7 90 21-113 2-98 (111)
191 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00047 1.6E-08 53.9 8.9 117 1-122 192-328 (338)
192 2kat_A Uncharacterized protein 97.5 0.0015 5E-08 42.0 9.8 79 6-86 3-81 (115)
193 3dss_A Geranylgeranyl transfer 97.5 0.023 7.9E-07 44.1 18.9 181 4-192 90-303 (331)
194 1ihg_A Cyclophilin 40; ppiase 97.5 0.0017 5.8E-08 51.5 11.5 63 59-121 224-301 (370)
195 2hr2_A Hypothetical protein; a 97.5 0.0051 1.7E-07 42.2 12.3 99 23-121 11-130 (159)
196 1na3_A Designed protein CTPR2; 97.4 0.0041 1.4E-07 37.6 10.6 81 22-104 8-88 (91)
197 2kat_A Uncharacterized protein 97.4 0.002 6.9E-08 41.3 9.4 80 41-122 3-82 (115)
198 1klx_A Cysteine rich protein B 97.3 0.016 5.4E-07 38.7 13.3 78 38-123 10-91 (138)
199 2hr2_A Hypothetical protein; a 97.3 0.0048 1.6E-07 42.4 10.3 85 2-86 25-130 (159)
200 3ma5_A Tetratricopeptide repea 97.1 0.0048 1.6E-07 38.6 8.9 62 23-85 7-68 (100)
201 3qww_A SET and MYND domain-con 97.1 0.0055 1.9E-07 49.6 11.2 87 35-121 310-410 (433)
202 3qww_A SET and MYND domain-con 97.1 0.0017 5.7E-08 52.6 8.2 85 2-86 312-410 (433)
203 2uy1_A Cleavage stimulation fa 97.1 0.033 1.1E-06 45.8 16.0 172 1-192 226-412 (493)
204 3ma5_A Tetratricopeptide repea 97.1 0.0059 2E-07 38.2 8.9 66 56-122 5-70 (100)
205 3qwp_A SET and MYND domain-con 97.1 0.0058 2E-07 49.4 10.7 92 29-120 293-398 (429)
206 3qwp_A SET and MYND domain-con 96.9 0.015 5.1E-07 47.0 11.6 97 65-191 294-398 (429)
207 1zu2_A Mitochondrial import re 96.8 0.008 2.7E-07 41.2 8.0 82 3-86 17-119 (158)
208 3mkq_A Coatomer beta'-subunit; 96.8 0.0058 2E-07 53.2 9.2 133 25-191 631-763 (814)
209 1na3_A Designed protein CTPR2; 96.7 0.011 3.7E-07 35.6 7.9 65 58-123 9-73 (91)
210 2l6j_A TPR repeat-containing p 96.7 0.014 4.9E-07 36.6 8.4 67 56-123 2-68 (111)
211 1dce_A Protein (RAB geranylger 96.5 0.21 7.3E-06 41.8 16.4 170 5-179 46-241 (567)
212 1zu2_A Mitochondrial import re 96.4 0.014 4.8E-07 40.0 7.3 98 34-136 13-132 (158)
213 3mkq_B Coatomer subunit alpha; 96.4 0.13 4.5E-06 35.8 12.6 95 2-117 19-113 (177)
214 3ly7_A Transcriptional activat 96.3 0.19 6.4E-06 39.5 14.0 143 19-168 190-347 (372)
215 2kc7_A BFR218_protein; tetratr 96.3 0.042 1.4E-06 33.7 8.5 56 31-87 8-64 (99)
216 1dce_A Protein (RAB geranylger 96.3 0.39 1.3E-05 40.3 16.6 151 37-192 43-220 (567)
217 1pc2_A Mitochondria fission pr 96.1 0.085 2.9E-06 35.8 9.7 80 5-86 15-99 (152)
218 3mkq_A Coatomer beta'-subunit; 96.1 0.064 2.2E-06 46.7 11.5 104 31-156 660-763 (814)
219 1wy6_A Hypothetical protein ST 95.9 0.2 6.7E-06 33.3 10.7 66 59-125 92-157 (172)
220 1v54_E Cytochrome C oxidase po 95.7 0.19 6.6E-06 31.2 9.2 64 38-102 25-88 (109)
221 2kc7_A BFR218_protein; tetratr 95.6 0.18 6.2E-06 30.7 9.5 59 64-123 6-65 (99)
222 3u64_A Protein TP_0956; tetrat 95.4 0.23 7.7E-06 37.7 10.4 67 59-125 200-272 (301)
223 2v5f_A Prolyl 4-hydroxylase su 95.3 0.23 7.8E-06 31.0 9.0 64 58-121 5-74 (104)
224 2v5f_A Prolyl 4-hydroxylase su 95.3 0.23 7.9E-06 31.0 8.9 71 21-93 3-79 (104)
225 2ff4_A Probable regulatory pro 95.2 0.15 5.3E-06 40.5 9.6 70 60-130 173-247 (388)
226 3bee_A Putative YFRE protein; 95.0 0.31 1.1E-05 29.9 10.6 66 21-87 4-72 (93)
227 3ly7_A Transcriptional activat 94.9 0.25 8.5E-06 38.9 9.6 77 54-134 273-349 (372)
228 2y69_E Cytochrome C oxidase su 94.8 0.47 1.6E-05 31.2 9.2 46 76-121 71-116 (152)
229 4h7y_A Dual specificity protei 94.7 0.61 2.1E-05 31.5 10.1 104 21-126 11-127 (161)
230 3bee_A Putative YFRE protein; 94.6 0.43 1.5E-05 29.2 9.3 67 55-123 3-73 (93)
231 1wy6_A Hypothetical protein ST 94.5 0.63 2.1E-05 30.9 14.2 137 2-161 21-157 (172)
232 3u64_A Protein TP_0956; tetrat 94.5 1.1 3.9E-05 33.9 12.5 93 76-172 181-285 (301)
233 1pc2_A Mitochondria fission pr 94.5 0.71 2.4E-05 31.3 12.1 83 39-123 14-101 (152)
234 3mkq_B Coatomer subunit alpha; 94.4 0.7 2.4E-05 32.2 10.1 102 66-189 13-114 (177)
235 1v54_E Cytochrome C oxidase po 93.6 0.76 2.6E-05 28.6 8.8 69 137-206 17-86 (109)
236 2y69_E Cytochrome C oxidase su 93.0 1.2 4.2E-05 29.3 8.7 67 139-206 62-129 (152)
237 2ff4_A Probable regulatory pro 92.0 1.1 3.7E-05 35.6 9.1 73 95-170 173-251 (388)
238 4h7y_A Dual specificity protei 91.8 1.3 4.5E-05 29.9 7.8 54 143-197 74-127 (161)
239 4b4t_P 26S proteasome regulato 91.2 5.1 0.00018 32.4 15.8 187 2-191 30-245 (445)
240 4b4t_P 26S proteasome regulato 90.5 5.9 0.0002 32.0 15.0 190 37-231 30-245 (445)
241 1nzn_A CGI-135 protein, fissio 90.0 2.1 7.1E-05 27.9 7.4 23 170-192 80-102 (126)
242 4gns_B Protein CSD3, chitin bi 88.9 3 0.0001 36.3 9.5 114 4-119 265-397 (754)
243 4gns_B Protein CSD3, chitin bi 88.5 3.8 0.00013 35.6 10.0 127 62-191 252-398 (754)
244 1nzn_A CGI-135 protein, fissio 86.6 4.9 0.00017 26.1 10.7 81 40-122 18-103 (126)
245 3t8k_A Uncharacterized protein 86.1 6.7 0.00023 27.2 10.4 93 31-127 11-108 (186)
246 4b4t_R RPN7, 26S proteasome re 86.0 9.1 0.00031 30.7 10.5 95 60-157 133-236 (429)
247 3kea_A K1L; tropism, ANK repea 85.4 2.6 8.9E-05 31.5 6.7 17 226-242 236-252 (285)
248 1wdy_A 2-5A-dependent ribonucl 84.8 0.85 2.9E-05 33.7 3.8 16 226-241 268-283 (285)
249 4b4t_R RPN7, 26S proteasome re 84.8 8.7 0.0003 30.8 9.8 97 24-122 132-237 (429)
250 4fhn_B Nucleoporin NUP120; pro 84.7 24 0.00082 32.4 13.8 108 1-111 855-989 (1139)
251 1k1a_A B-cell lymphoma 3-encod 84.0 1.9 6.6E-05 30.9 5.3 86 29-118 12-101 (241)
252 3jxi_A Vanilloid receptor-rela 83.1 1.9 6.4E-05 31.6 5.0 49 2-50 16-73 (260)
253 1k1a_A B-cell lymphoma 3-encod 82.9 1.8 6E-05 31.2 4.7 180 1-199 19-211 (241)
254 3esl_A Checkpoint serine/threo 82.9 7 0.00024 27.7 7.4 88 4-94 60-151 (202)
255 3txn_A 26S proteasome regulato 81.9 10 0.00035 30.1 8.9 132 60-191 21-166 (394)
256 3ffl_A Anaphase-promoting comp 81.7 10 0.00035 26.0 8.7 103 17-119 12-148 (167)
257 2p58_C Putative type III secre 81.6 2.7 9.4E-05 26.1 4.3 72 146-230 24-95 (116)
258 2uwj_G Type III export protein 79.4 2.6 8.8E-05 26.2 3.6 72 146-230 23-94 (115)
259 4a1g_A Mitotic checkpoint seri 78.2 11 0.00036 25.5 6.8 54 41-94 83-137 (152)
260 1zbp_A Hypothetical protein VP 77.4 8.5 0.00029 28.7 6.6 48 2-50 11-58 (273)
261 1zbp_A Hypothetical protein VP 77.3 12 0.00039 28.0 7.3 119 66-192 5-128 (273)
262 2uwj_G Type III export protein 76.5 11 0.00038 23.4 6.3 85 38-131 21-105 (115)
263 2wvi_A Mitotic checkpoint seri 76.5 14 0.00046 25.3 7.0 72 20-94 60-132 (164)
264 3txn_A 26S proteasome regulato 76.2 27 0.00094 27.7 14.3 164 23-187 19-204 (394)
265 3eiq_C Programmed cell death p 75.3 27 0.00094 27.3 9.7 162 25-191 56-244 (358)
266 2p58_C Putative type III secre 75.1 12 0.00042 23.2 7.1 79 37-123 21-99 (116)
267 3eu9_A Huntingtin-interacting 73.5 5.6 0.00019 28.3 5.0 98 9-115 23-128 (240)
268 2fu4_A Ferric uptake regulatio 72.8 12 0.0004 21.8 6.3 58 49-107 8-66 (83)
269 1wdy_A 2-5A-dependent ribonucl 72.4 10 0.00034 27.7 6.3 30 171-200 186-215 (285)
270 3l6a_A Eukaryotic translation 70.2 32 0.0011 26.9 8.7 73 59-131 13-86 (364)
271 4aez_C MAD3, mitotic spindle c 70.1 12 0.00042 27.0 5.8 54 40-93 131-185 (223)
272 2fe3_A Peroxide operon regulat 69.8 21 0.00072 23.6 7.8 61 47-108 11-71 (145)
273 2fu4_A Ferric uptake regulatio 68.6 15 0.00051 21.4 7.1 62 12-74 6-68 (83)
274 2zu6_B Programmed cell death p 67.7 38 0.0013 25.8 13.3 197 26-234 6-232 (307)
275 3eyy_A Putative iron uptake re 67.6 24 0.00081 23.4 6.7 59 47-107 8-66 (145)
276 1mzb_A Ferric uptake regulatio 67.3 23 0.00079 23.1 7.3 59 48-107 8-67 (136)
277 2xig_A Ferric uptake regulatio 66.4 26 0.00089 23.3 7.3 60 47-107 16-75 (150)
278 2ijq_A Hypothetical protein; s 65.4 24 0.00082 24.0 6.2 50 37-86 46-103 (161)
279 2d2s_A Exocyst complex compone 64.9 38 0.0013 24.7 9.3 90 29-121 24-119 (235)
280 3ffl_A Anaphase-promoting comp 64.9 7.5 0.00026 26.6 3.7 127 51-190 11-148 (167)
281 2d2s_A Exocyst complex compone 64.3 39 0.0013 24.6 8.8 89 99-191 24-118 (235)
282 2ion_A PDCD4, programmed cell 64.0 30 0.001 23.2 8.7 24 62-85 13-36 (152)
283 2w57_A Ferric uptake regulatio 63.8 29 0.001 23.1 7.3 60 47-107 6-66 (150)
284 2etb_A Transient receptor pote 63.4 12 0.00042 27.0 5.1 58 28-86 4-71 (256)
285 3hra_A Ankyrin repeat family p 62.4 7.2 0.00025 26.9 3.5 82 30-117 9-93 (201)
286 3eyy_A Putative iron uptake re 62.3 24 0.00083 23.3 5.9 63 11-75 7-69 (145)
287 1y8m_A FIS1; mitochondria, unk 61.9 32 0.0011 22.9 9.1 58 139-198 52-109 (144)
288 1mzb_A Ferric uptake regulatio 61.9 30 0.001 22.5 6.7 64 12-76 7-71 (136)
289 2ijq_A Hypothetical protein; s 61.6 35 0.0012 23.2 7.9 60 61-121 36-103 (161)
290 1jog_A Hypothetical protein HI 61.6 16 0.00054 24.4 4.8 83 146-232 55-141 (146)
291 2rfa_A Transient receptor pote 61.1 29 0.001 24.4 6.7 79 151-239 136-225 (232)
292 1ug3_A EIF4GI, eukaryotic prot 60.4 16 0.00055 28.3 5.4 25 26-50 14-38 (339)
293 3o48_A Mitochondria fission 1 60.1 33 0.0011 22.5 9.3 24 98-121 83-106 (134)
294 3jxi_A Vanilloid receptor-rela 60.1 45 0.0015 23.9 10.5 63 170-237 143-211 (260)
295 2keb_A DNA polymerase subunit 59.9 27 0.00094 21.4 7.0 56 42-99 28-88 (101)
296 1wgl_A TOLL-interacting protei 59.6 13 0.00044 20.4 3.4 22 36-57 36-57 (59)
297 2qx5_A Nucleoporin NIC96; mRNA 59.5 35 0.0012 29.3 7.5 32 198-229 532-563 (661)
298 3hra_A Ankyrin repeat family p 58.9 4.6 0.00016 27.9 2.0 51 29-83 42-94 (201)
299 2fe3_A Peroxide operon regulat 58.9 36 0.0012 22.4 7.6 64 11-75 10-73 (145)
300 4fke_A Aminopeptidase N; zinc 58.8 1E+02 0.0035 27.6 18.3 158 27-192 690-859 (909)
301 2w57_A Ferric uptake regulatio 58.5 37 0.0013 22.5 6.3 65 11-76 5-70 (150)
302 2pnn_A Transient receptor pote 57.8 11 0.00037 27.7 3.9 48 2-49 24-80 (273)
303 2ion_A PDCD4, programmed cell 57.8 40 0.0014 22.6 9.1 26 25-50 11-36 (152)
304 1ug3_A EIF4GI, eukaryotic prot 57.6 63 0.0022 24.9 9.9 24 62-85 15-38 (339)
305 3i5p_A Nucleoporin NUP170; hel 55.9 22 0.00074 29.5 5.6 35 164-198 217-251 (525)
306 3rjo_A Endoplasmic reticulum a 55.4 77 0.0026 25.2 22.2 156 62-228 201-368 (419)
307 4ets_A Ferric uptake regulatio 55.3 45 0.0015 22.5 7.3 72 39-111 13-87 (162)
308 2keb_A DNA polymerase subunit 54.6 35 0.0012 21.0 7.1 58 75-134 26-88 (101)
309 3c1d_A Protein ORAA, regulator 53.6 48 0.0016 22.3 8.7 50 39-90 46-95 (159)
310 3ygs_P Procaspase 9; apoptosis 53.5 31 0.0011 21.0 4.8 66 9-80 25-90 (97)
311 4ets_A Ferric uptake regulatio 53.4 49 0.0017 22.3 7.5 49 84-133 24-74 (162)
312 4fke_A Aminopeptidase N; zinc 52.6 1.3E+02 0.0044 26.9 16.6 157 62-227 690-858 (909)
313 2b7e_A PRE-mRNA processing pro 52.2 15 0.00051 20.2 2.8 28 75-103 3-31 (59)
314 2yru_A Steroid receptor RNA ac 52.0 44 0.0015 21.3 5.9 46 148-193 45-90 (118)
315 2nsz_A Programmed cell death p 51.8 46 0.0016 21.5 10.2 64 62-126 11-76 (129)
316 2nsz_A Programmed cell death p 50.9 47 0.0016 21.4 9.8 75 95-171 9-85 (129)
317 4b4t_S RPN3, 26S proteasome re 50.7 25 0.00086 29.0 5.1 64 23-86 231-298 (523)
318 3ljn_A Hypothetical protein; a 50.6 81 0.0028 24.0 9.4 23 215-237 297-319 (364)
319 4aez_C MAD3, mitotic spindle c 49.8 40 0.0014 24.3 5.5 52 147-198 132-184 (223)
320 3cqc_A Nuclear pore complex pr 49.8 78 0.0027 23.6 10.0 25 25-49 36-60 (270)
321 3t8k_A Uncharacterized protein 49.3 32 0.0011 23.6 5.0 159 67-235 12-182 (186)
322 2o03_A Probable zinc uptake re 48.9 36 0.0012 21.9 4.9 46 64-109 16-61 (131)
323 3kea_A K1L; tropism, ANK repea 48.8 28 0.00097 25.7 5.0 142 29-189 34-183 (285)
324 2r9g_A AAA ATPase, central reg 48.4 70 0.0024 22.6 9.4 44 28-72 16-62 (204)
325 3esl_A Checkpoint serine/threo 47.2 73 0.0025 22.6 12.6 77 53-129 72-151 (202)
326 3mwm_A ZUR, putative metal upt 47.0 24 0.00081 23.2 3.8 46 63-108 18-63 (139)
327 4a1g_A Mitotic checkpoint seri 47.0 63 0.0021 21.7 10.4 73 53-128 63-136 (152)
328 3twr_A Tankyrase-2; ankyrin re 45.6 22 0.00076 23.4 3.6 18 30-47 12-29 (165)
329 3ljn_A Hypothetical protein; a 45.5 45 0.0015 25.5 5.8 97 21-126 16-114 (364)
330 2o03_A Probable zinc uptake re 45.5 54 0.0018 21.1 5.4 17 106-122 23-39 (131)
331 4fhn_B Nucleoporin NUP120; pro 45.4 1.8E+02 0.0063 26.7 16.7 96 28-124 847-969 (1139)
332 2rg8_A Programmed cell death p 45.2 70 0.0024 21.7 6.3 23 97-119 14-36 (165)
333 2xig_A Ferric uptake regulatio 45.1 65 0.0022 21.3 7.9 65 10-75 14-78 (150)
334 3qye_A TBC1 domain family memb 44.3 74 0.0025 24.3 6.8 159 27-192 153-325 (331)
335 3bge_A Predicted ATPase; struc 43.4 84 0.0029 22.2 8.3 32 37-68 21-52 (201)
336 3rjo_A Endoplasmic reticulum a 43.4 1.2E+02 0.0042 24.0 20.4 143 25-177 199-353 (419)
337 3mwm_A ZUR, putative metal upt 42.9 52 0.0018 21.5 5.0 25 99-123 19-43 (139)
338 4g8k_A 2-5A-dependent ribonucl 42.9 46 0.0016 25.1 5.5 14 79-92 220-233 (337)
339 2zu6_B Programmed cell death p 41.7 1.1E+02 0.0039 23.2 8.4 94 95-190 168-267 (307)
340 3se6_A Endoplasmic reticulum a 41.4 2E+02 0.0069 26.0 15.3 161 62-229 752-920 (967)
341 2qq8_A TBC1 domain family memb 40.9 42 0.0015 25.8 4.9 83 38-124 169-259 (334)
342 3qil_A Clathrin heavy chain 1; 39.8 27 0.00093 22.4 3.0 49 64-115 38-86 (125)
343 3ibx_A TENA, HP1287, putative 38.4 70 0.0024 22.8 5.5 20 22-41 112-131 (221)
344 1wty_A Hypothetical protein TT 37.8 76 0.0026 20.0 6.4 76 3-85 3-79 (119)
345 3bu8_A Telomeric repeat-bindin 37.8 1.1E+02 0.0038 22.0 9.2 49 74-122 88-143 (235)
346 3eiq_C Programmed cell death p 37.7 1.4E+02 0.0049 23.2 8.7 95 95-191 219-319 (358)
347 2etb_A Transient receptor pote 37.4 76 0.0026 22.6 5.7 58 64-121 5-71 (256)
348 2rg8_A Programmed cell death p 37.2 96 0.0033 21.0 6.6 27 25-51 12-38 (165)
349 2p1h_A APAF-1, apoptotic prote 36.7 68 0.0023 19.1 7.2 61 43-111 25-85 (94)
350 2rfa_A Transient receptor pote 36.3 62 0.0021 22.6 5.0 22 67-88 160-181 (232)
351 2wpv_A GET4, UPF0363 protein Y 35.9 1.4E+02 0.0049 22.7 18.9 20 173-192 197-216 (312)
352 1avy_A Fibritin, gpwac M; bact 35.6 30 0.001 19.6 2.3 50 192-241 3-52 (74)
353 3o48_A Mitochondria fission 1 35.5 93 0.0032 20.4 10.0 67 21-87 38-107 (134)
354 3ctd_A Putative ATPase, AAA fa 35.4 1.2E+02 0.0041 21.6 8.6 44 26-69 35-81 (213)
355 3qil_A Clathrin heavy chain 1; 35.2 34 0.0012 22.0 2.9 53 25-80 34-86 (125)
356 2pnn_A Transient receptor pote 35.2 1.2E+02 0.0043 21.7 10.8 64 170-238 151-220 (273)
357 3aji_A 26S proteasome non-ATPa 34.5 69 0.0024 22.3 5.0 103 2-115 17-125 (231)
358 3qye_A TBC1 domain family memb 34.3 1.5E+02 0.0052 22.5 8.8 154 73-236 164-329 (331)
359 3ygs_P Procaspase 9; apoptosis 34.1 79 0.0027 19.1 7.4 40 143-186 51-90 (97)
360 3no6_A Transcriptional activat 33.7 1.4E+02 0.0047 21.8 6.9 21 22-42 128-149 (248)
361 3b7b_A Euchromatic histone-lys 33.7 1.2E+02 0.0041 21.1 8.6 195 9-232 25-235 (237)
362 3d5l_A Regulatory protein RECX 33.5 1.3E+02 0.0045 21.5 8.7 111 74-188 92-204 (221)
363 3e3v_A Regulatory protein RECX 32.8 1.2E+02 0.0041 20.8 12.4 113 75-191 50-164 (177)
364 2qq8_A TBC1 domain family memb 32.6 1.7E+02 0.0057 22.4 7.7 44 10-53 215-258 (334)
365 3f3f_C Nucleoporin NUP85; stru 32.2 2.3E+02 0.0077 23.8 8.2 25 95-119 518-542 (570)
366 3m6y_A 4-hydroxy-2-oxoglutarat 32.1 81 0.0028 23.1 4.7 81 39-119 170-267 (275)
367 3c1d_A Protein ORAA, regulator 32.0 1.1E+02 0.0039 20.4 11.5 53 73-127 45-97 (159)
368 4b93_B Ankyrin repeat domain-c 31.9 97 0.0033 22.6 5.5 24 22-46 8-31 (269)
369 2yru_A Steroid receptor RNA ac 31.8 1E+02 0.0034 19.7 6.2 42 80-121 48-89 (118)
370 2wvi_A Mitotic checkpoint seri 30.9 1.3E+02 0.0043 20.5 10.6 75 53-130 58-133 (164)
371 2cos_A Serine/threonine protei 30.7 66 0.0023 17.2 3.2 36 79-119 11-48 (54)
372 1bd8_A P19INK4D CDK4/6 inhibit 29.8 13 0.00045 24.3 0.4 20 29-48 5-24 (156)
373 4fn6_A Thiaminase-2, thiaminas 29.7 1.5E+02 0.0052 21.1 7.8 22 21-42 108-130 (229)
374 1q2z_A ATP-dependent DNA helic 29.6 48 0.0016 21.2 3.0 54 141-197 39-96 (120)
375 4g8k_A 2-5A-dependent ribonucl 29.3 1.1E+02 0.0039 22.8 5.7 106 44-165 220-330 (337)
376 3f3f_C Nucleoporin NUP85; stru 29.1 1.6E+02 0.0054 24.7 6.6 88 23-112 479-568 (570)
377 2qfz_A TBC1 domain family memb 28.3 1.6E+02 0.0054 22.6 6.3 112 40-155 189-312 (345)
378 3m0z_A Putative aldolase; MCSG 28.3 78 0.0027 23.0 4.0 82 39-120 147-245 (249)
379 3f6q_A Integrin-linked protein 28.1 1.1E+02 0.0038 20.2 5.0 16 32-47 11-26 (179)
380 3lxu_X Tripeptidyl-peptidase 2 27.9 4E+02 0.014 25.3 9.4 90 143-240 1263-1352(1354)
381 3r88_A Anthranilate phosphorib 27.3 1.5E+02 0.0051 23.3 6.0 71 91-163 21-93 (377)
382 2qfz_A TBC1 domain family memb 26.8 1.6E+02 0.0056 22.5 6.2 111 5-119 189-312 (345)
383 1oai_A Nuclear RNA export fact 26.8 63 0.0022 17.6 2.7 15 3-17 35-49 (59)
384 3dfg_A Xcrecx, regulatory prot 26.1 1.5E+02 0.0052 19.9 15.2 129 24-178 18-146 (162)
385 2wpv_A GET4, UPF0363 protein Y 25.6 2.2E+02 0.0076 21.7 17.2 21 214-234 198-218 (312)
386 3hzj_A Rabgap1L, RAB GTPase-ac 25.6 2.1E+02 0.0073 21.4 8.7 149 38-193 130-294 (310)
387 2fv2_A RCD1 required for cell 25.0 2E+02 0.0067 21.4 5.8 54 138-191 182-236 (268)
388 2y7e_A 3-keto-5-aminohexanoate 24.7 62 0.0021 24.3 3.2 26 178-203 127-152 (282)
389 3d5l_A Regulatory protein RECX 24.1 2E+02 0.0068 20.5 13.2 51 110-162 93-143 (221)
390 1otr_A Protein CUE2; protein-p 23.8 88 0.003 16.3 5.1 15 35-49 30-44 (49)
391 1jog_A Hypothetical protein HI 23.7 1.6E+02 0.0056 19.4 7.0 57 39-98 54-115 (146)
392 1ais_B TFB TFIIB, protein (tra 23.5 1.9E+02 0.0063 20.0 7.9 14 221-234 127-140 (200)
393 2xai_A ASB-9, ankyrin repeat a 22.9 1.4E+02 0.0048 21.3 5.0 13 30-42 40-52 (261)
394 2qcx_A Transcriptional activat 22.4 2.3E+02 0.008 20.7 6.8 24 21-44 134-157 (263)
395 3e3v_A Regulatory protein RECX 22.3 1.9E+02 0.0066 19.7 10.2 53 39-92 49-101 (177)
396 1y8m_A FIS1; mitochondria, unk 22.2 1.8E+02 0.0061 19.3 13.0 68 55-122 36-106 (144)
397 2bn5_A PSI; nuclear protein, s 22.1 75 0.0026 14.9 2.3 21 65-85 9-29 (33)
398 1rw2_A ATP-dependent DNA helic 22.1 23 0.00079 23.8 0.4 51 38-91 73-127 (152)
399 3v31_A Ankyrin repeat family A 22.1 1.2E+02 0.0042 19.6 4.2 19 30-48 7-25 (167)
400 1rtw_A Transcriptional activat 22.0 2.1E+02 0.0073 20.1 6.1 74 44-120 83-176 (220)
401 2ko4_A Mediator of RNA polymer 21.7 92 0.0031 18.2 2.8 32 18-49 31-62 (81)
402 4b4t_S RPN3, 26S proteasome re 21.3 3.5E+02 0.012 22.4 14.6 65 58-122 231-299 (523)
403 3hzj_A Rabgap1L, RAB GTPase-ac 20.3 2.8E+02 0.0095 20.8 9.2 119 116-239 177-300 (310)
404 3utm_A Tankyrase-1; tankyrase, 20.2 95 0.0033 23.2 3.7 81 28-117 60-145 (351)
405 2jp7_A MRNA export factor MEX6 20.2 41 0.0014 18.3 1.1 12 3-14 34-45 (57)
406 3myf_A Sensor protein; HPT, hi 20.2 1.7E+02 0.0059 18.4 9.3 15 35-49 45-59 (119)
407 1zl8_A LIN-7; heterodimer, alp 20.2 1.1E+02 0.0038 16.1 4.4 19 38-56 8-26 (53)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.3e-40 Score=273.00 Aligned_cols=207 Identities=11% Similarity=0.088 Sum_probs=179.2
Q ss_pred Cch-HHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 039342 2 GLY-KECQAILSRMSESGVARNS-DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL------ 73 (248)
Q Consensus 2 g~~-~~a~~~~~~m~~~g~~~~~-~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~------ 73 (248)
|+. ..+..+++++++.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|++||..|||+||.+|++.+.
T Consensus 3 G~~~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~ 82 (501)
T 4g26_A 3 GHMASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP 82 (501)
T ss_dssp ---------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred ccccchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh
Confidence 444 4455666778888776654 46899999999999999999999999999999999999999999998765
Q ss_pred ---hhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHH
Q 039342 74 ---VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150 (248)
Q Consensus 74 ---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (248)
++.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+ +.+.|+++.|.+
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~-~~~~g~~~~A~~ 161 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFG-FCRKGDADKAYE 161 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH-HHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHH-HHHCCCHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999 778899999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhh
Q 039342 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSV 209 (248)
Q Consensus 151 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 209 (248)
+|++|.+.|+.||..||++||++|++.|++++|.+++++|.+.|+.|+..||+.++..+
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998444
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.5e-37 Score=251.73 Aligned_cols=176 Identities=15% Similarity=0.136 Sum_probs=170.4
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR---------FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA 71 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 71 (248)
+|++++|+++|++|.+.|++||..|||+||.+|++.+. ++.|.++|++|.+.|+.||..||+++|.+|++.
T Consensus 39 ~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~ 118 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAK 118 (501)
T ss_dssp SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999998765 688999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHH
Q 039342 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYV 151 (248)
Q Consensus 72 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 151 (248)
|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+ +.+.|++++|.++
T Consensus 119 g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~-~~~~g~~d~A~~l 197 (501)
T 4g26_A 119 DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV-SMDTKNADKVYKT 197 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH-HHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HhhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 8888999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhc
Q 039342 152 FDKLNCEGYGLGMRFYNALLEALWCL 177 (248)
Q Consensus 152 ~~~m~~~~~~p~~~~~~~li~~~~~~ 177 (248)
+++|.+.|..|+..||+.++..|+..
T Consensus 198 l~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 198 LQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999864
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=3.5e-24 Score=183.52 Aligned_cols=150 Identities=15% Similarity=0.119 Sum_probs=126.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEME---KVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~---~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 99 (248)
..|||+||++||+.|++++|.++|++|. +.|+.||..|||+||++||+.|++++|.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998886 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCC------HHHHHHHHH
Q 039342 100 LAVYAKSNR-WDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG------MRFYNALLE 172 (248)
Q Consensus 100 i~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~li~ 172 (248)
|.++++.|+ .++|.++|++|.+.|+.|+..+|++++.+ ..+ +.+.+..+.+ ..++.|+ ..+...|.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~-~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE-EDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH-HHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh-hhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 999999998 57899999999999999999999999865 222 3333333333 3355554 556666777
Q ss_pred HHHhcC
Q 039342 173 ALWCLG 178 (248)
Q Consensus 173 ~~~~~g 178 (248)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=2.9e-23 Score=177.88 Aligned_cols=137 Identities=10% Similarity=0.071 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHH
Q 039342 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKS---SGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133 (248)
Q Consensus 57 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 133 (248)
-..|||++|++||+.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999998864 48999999999999999999999999999999999999999999999
Q ss_pred HhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
+|.+++..+...+.|.++|++|.+.|+.||..+|+++++++.+.+-++.+ +++ ..++.|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv-~P~f~p~ 265 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV----HKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH----GGG-CCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH----HHh-CcccCCC
Confidence 99985554444689999999999999999999999999877765433333 333 3455554
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.88 E-value=1.4e-20 Score=158.85 Aligned_cols=221 Identities=12% Similarity=-0.005 Sum_probs=124.6
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.++|+++.+.+. .+..+|+.++.++.+.|++++|.++++++.+.. +.+..+|+.+..+|.+.|++++|.++|
T Consensus 319 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 555666666665554332 244445555555555555555555555544321 345566666666666666666666666
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..+... +...|+++.|..+|+.+.+....
T Consensus 397 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 397 SKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ-HMQLGNILLANEYLQSSYALFQY 473 (597)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCC
Confidence 6665532 1245566666666666666666666666665543 1233444444433 55556666666666666654322
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC----CCCCC--cchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 162 LGMRFYNALLEALWCLGLRERAARVLDEATKR----GLFPE--LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 162 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
+..+|+.+...|.+.|++++|.++|+++.+. +..|+ ..+|..+. ..|.+.|++++|.+.++++.+.
T Consensus 474 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 474 -DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG-----HAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH-----HHHHHTTCHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH-----HHHHHhcCHHHHHHHHHHHHHh
Confidence 4566666666666666666666666666543 55555 34444444 5555566666666666666554
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.87 E-value=4.7e-20 Score=155.57 Aligned_cols=225 Identities=10% Similarity=-0.031 Sum_probs=193.3
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.++|+++.+.. +.+..+|+.+...|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|
T Consensus 353 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78999999999998644 3578999999999999999999999999998753 356889999999999999999999999
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc---
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE--- 158 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--- 158 (248)
+++.+.+ +.+..+|+.+..+|.+.|++++|.++|+++.+... .+..++..+... +...|++++|..+|+++.+.
T Consensus 431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVV-AFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhhhc
Confidence 9998764 34788999999999999999999999999987642 345566666665 77889999999999999876
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHH
Q 039342 159 -GYGLG--MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFM 235 (248)
Q Consensus 159 -~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~ 235 (248)
+..|+ ..+|..+..+|.+.|++++|.++|+++.+.+ +.+..+|..+. ..|.+.|++++|.+.++++.+.
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~l~~-- 579 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIA-----LVYLHKKIPGLAITHLHESLAI-- 579 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHH-----HHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHH-----HHHHHhCCHHHHHHHHHHHHhc--
Confidence 77888 7899999999999999999999999998764 33566666666 7888999999999999998875
Q ss_pred cCCC
Q 039342 236 MGED 239 (248)
Q Consensus 236 ~~~~ 239 (248)
.|+.
T Consensus 580 ~p~~ 583 (597)
T 2xpi_A 580 SPNE 583 (597)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 5543
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.71 E-value=6.9e-15 Score=117.70 Aligned_cols=216 Identities=15% Similarity=0.094 Sum_probs=167.9
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.+.|+++.+... .+..+|+.+...+.+.|++++|.+.|+++.+.+ +-+...|..+-..+...|++++|...|
T Consensus 149 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp SCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 677788888877766432 246778888888888888888888888876654 345667777788888888888888888
Q ss_pred HHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-HhHHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 82 QEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH-QVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 82 ~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
++..+. .| +..++..+...|.+.|++++|...|+++.+.. |+. ..+..+... +...|+++.|...++.+.+..
T Consensus 227 ~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 227 LRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANA-LKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhC
Confidence 877664 34 57889999999999999999999999998765 433 344444443 777889999999999988774
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC-cchhhhHHhhhhhhccccchHHHHHHHHHHHHHH
Q 039342 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232 (248)
Q Consensus 160 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~ 232 (248)
+.+..+++.+...+.+.|++++|.+.++++.+. .|+ ..++..+. ..+.+.|++++|...++++.+
T Consensus 302 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 302 -PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLA-----SVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH-----HHHHTTTCCHHHHHHHHHHHT
T ss_pred -cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHh
Confidence 447889999999999999999999999998764 454 44555555 778889999999999998876
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.69 E-value=1.5e-14 Score=115.69 Aligned_cols=185 Identities=12% Similarity=0.029 Sum_probs=75.1
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ +-+...+..+-..+...|++++|.+.|
T Consensus 81 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34444444444443321 1123334444444444444444444444443321 111223333344444444455555555
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.. |+.......+...+...++++.|...++.......
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p- 234 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP- 234 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-
Confidence 4444321 1134455555555555555555555555554332 22111111111112223333333333333322211
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 162 LGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 162 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
-+..++..+...+.+.|++++|.+.|+++.+
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1234444555555555555555555555544
No 9
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=1.5e-14 Score=111.58 Aligned_cols=216 Identities=16% Similarity=0.116 Sum_probs=164.9
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN-ERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
|+++.|+..++. . -+|+..++..+...+...++.++|.+.++++...+..|+ ...+..+-..+.+.|++++|.+.
T Consensus 48 g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~ 123 (291)
T 3mkr_A 48 RKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123 (291)
T ss_dssp TCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 667777765543 1 346788999999999999999999999999988876564 45556666899999999999999
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHH--HhcccccccchHHHHHHHHHHHHhc
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ--MIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
+++ ..+...+..+...+.+.|++++|...|+++.+.. |+...... .........++++.|..+|+++.+.
T Consensus 124 l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 124 LHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp HTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 987 3578899999999999999999999999998775 54432221 1112233568899999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCC-CcchhhhHHhhhhhhccccchHHHH-HHHHHHHHHHHHHc
Q 039342 159 GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP-ELFRHNKLVWSVDVHRMWEGGAYTA-ISVWLNKMYEMFMM 236 (248)
Q Consensus 159 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~g~~~~-~~~~~~~m~~~~~~ 236 (248)
.+.+...++.+..++.+.|++++|.+.|++..+. .| +..++..+. ..+...|+.++ +.+++++..+. .
T Consensus 196 -~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~-----~~~~~~g~~~eaa~~~~~~~~~~--~ 265 (291)
T 3mkr_A 196 -CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLV-----VLSQHLGKPPEVTNRYLSQLKDA--H 265 (291)
T ss_dssp -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH-----HHHHHTTCCHHHHHHHHHHHHHH--C
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH-----HHHHHcCCCHHHHHHHHHHHHHh--C
Confidence 3458889999999999999999999999998764 34 334455554 45556776654 56787777655 5
Q ss_pred CCC
Q 039342 237 GED 239 (248)
Q Consensus 237 ~~~ 239 (248)
|+.
T Consensus 266 P~~ 268 (291)
T 3mkr_A 266 RSH 268 (291)
T ss_dssp TTC
T ss_pred CCC
Confidence 543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.67 E-value=2.5e-14 Score=116.42 Aligned_cols=227 Identities=12% Similarity=0.068 Sum_probs=177.9
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|.++|+++.+.. +.+...|..+...+.+.|++++|.+.|+++.+.+ +.+...+..+..+|.+.|++++|.+.
T Consensus 39 ~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 489999999999998753 3478899999999999999999999999998765 45678899999999999999999999
Q ss_pred HHHHHHCCCCcC-H---hhHHHHHH------------HHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccch
Q 039342 81 FQEIKSSGILPS-V---MCYCMLLA------------VYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144 (248)
Q Consensus 81 ~~~m~~~~~~p~-~---~~~~~li~------------~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (248)
|+++.+.. |+ . ..+..+.. .+.+.|++++|+..|+++.+.. |+.......+...+...|+
T Consensus 117 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 117 FKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFIKEGE 192 (450)
T ss_dssp HHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCC
Confidence 99998753 43 3 56665544 4889999999999999998754 4443333333344778889
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHh--------hhhhhcccc
Q 039342 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW--------SVDVHRMWE 216 (248)
Q Consensus 145 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~--------~~~~~~~~~ 216 (248)
++.|...++.+.+... .+..++..+...|...|++++|.+.|+++.+. .|+.......+. ......+.+
T Consensus 193 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 193 PRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIR 269 (450)
T ss_dssp GGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887642 36788999999999999999999999998864 555443222210 001366778
Q ss_pred chHHHHHHHHHHHHHHHHHcCC
Q 039342 217 GGAYTAISVWLNKMYEMFMMGE 238 (248)
Q Consensus 217 ~g~~~~~~~~~~~m~~~~~~~~ 238 (248)
.|++++|...++++.+. .|+
T Consensus 270 ~g~~~~A~~~~~~~l~~--~p~ 289 (450)
T 2y4t_A 270 DGRYTDATSKYESVMKT--EPS 289 (450)
T ss_dssp HTCHHHHHHHHHHHHHH--CCS
T ss_pred cCCHHHHHHHHHHHHhc--CCc
Confidence 89999999999998874 454
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.67 E-value=3.2e-14 Score=115.77 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=56.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHH-----------
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE----RTLEAVLS----------- 66 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~----------- 66 (248)
|++++|.+.|+++.+.+. .+...|..+...|.+.|++++|.+.|+++.+. .|+. ..+..+..
T Consensus 74 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 74 GKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666555432 23555666666666666666666666665543 2322 23333322
Q ss_pred -HHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 67 -VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120 (248)
Q Consensus 67 -~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 120 (248)
.+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|...|+++.
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 204 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAAS 204 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2444555555555555544321 1133444444444445555555554444443
No 12
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.63 E-value=3.3e-14 Score=112.77 Aligned_cols=222 Identities=12% Similarity=-0.001 Sum_probs=171.1
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.+.|+++.+... .+..+|..+...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|.+.|
T Consensus 79 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 156 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEAL 156 (365)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHH
Confidence 789999999999987543 468899999999999999999999999997764 456889999999999999999999999
Q ss_pred HHHHHCCCCcC-----------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-hHHhHHHHhcccccccchHHHHH
Q 039342 82 QEIKSSGILPS-----------VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN-IHQVTGQMIKGEFDDESNWQMVE 149 (248)
Q Consensus 82 ~~m~~~~~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 149 (248)
++..+.. |+ ...+..+...+.+.|++++|...|++..+..... +...+..+... +...|+++.|.
T Consensus 157 ~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~-~~~~g~~~~A~ 233 (365)
T 4eqf_A 157 KNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL-FHLSGEFNRAI 233 (365)
T ss_dssp HHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH-HHHHTCHHHHH
T ss_pred HHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH-HHHCCCHHHHH
Confidence 9988642 32 2233445788999999999999999998765221 34445444443 67789999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC-cchhhhHHhhhhhhccccchHHHHHHHHHH
Q 039342 150 YVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVHRMWEGGAYTAISVWLN 228 (248)
Q Consensus 150 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~g~~~~~~~~~~ 228 (248)
..++...+... .+..++..+..+|...|++++|...|++..+. .|+ ..++..+. ..+...|++++|...++
T Consensus 234 ~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~-----~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 234 DAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLG-----ISCINLGAYREAVSNFL 305 (365)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH-----HHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHH-----HHHHHCCCHHHHHHHHH
Confidence 99999887643 36788999999999999999999999998775 444 34444444 67788999999999999
Q ss_pred HHHHHHHc
Q 039342 229 KMYEMFMM 236 (248)
Q Consensus 229 ~m~~~~~~ 236 (248)
+..+..-.
T Consensus 306 ~al~~~~~ 313 (365)
T 4eqf_A 306 TALSLQRK 313 (365)
T ss_dssp HHHHHHHC
T ss_pred HHHHhCcc
Confidence 98877533
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.62 E-value=1.9e-13 Score=108.23 Aligned_cols=222 Identities=11% Similarity=0.004 Sum_probs=166.3
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|...|+++.+... .+...|..+...+.+.|++++|.+.|++..+.. +.+..++..+...|...|++++|.+.+
T Consensus 78 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp TCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 788899999998887542 467788888888999999999999999887664 457788888888999999999999999
Q ss_pred HHHHHCCCCcCHhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHHCCCCc-hHHhHHHHhcccccccchH
Q 039342 82 QEIKSSGILPSVMCYCM---------------LLAVYAKSNRWDDAYGLLDEMHTNRISN-IHQVTGQMIKGEFDDESNW 145 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~l~~~~~~~~~~ 145 (248)
+++.+.... +...+.. .+..+...|++++|...|+++.+..... +...+..+... +...|++
T Consensus 156 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~-~~~~g~~ 233 (368)
T 1fch_A 156 RDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL-FNLSGEY 233 (368)
T ss_dssp HHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH-HHHTTCH
T ss_pred HHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH-HHHcCCH
Confidence 888875322 2222221 2344448888999999999887654221 23444444433 6778899
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC-cchhhhHHhhhhhhccccchHHHHHH
Q 039342 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVHRMWEGGAYTAIS 224 (248)
Q Consensus 146 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~g~~~~~~ 224 (248)
+.|...++...+... .+..++..+...+...|++++|...|++..+. .|+ ...+..+. ..+.+.|++++|.
T Consensus 234 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~-----~~~~~~g~~~~A~ 305 (368)
T 1fch_A 234 DKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLG-----ISCINLGAHREAV 305 (368)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH-----HHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHH-----HHHHHCCCHHHHH
Confidence 999999999887642 35778999999999999999999999998764 343 33444444 6778899999999
Q ss_pred HHHHHHHHHHH
Q 039342 225 VWLNKMYEMFM 235 (248)
Q Consensus 225 ~~~~~m~~~~~ 235 (248)
..+++..+..-
T Consensus 306 ~~~~~al~~~~ 316 (368)
T 1fch_A 306 EHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhCC
Confidence 99998887643
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.62 E-value=2.9e-13 Score=105.37 Aligned_cols=222 Identities=12% Similarity=0.009 Sum_probs=167.2
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG-LVDESKE 79 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~ 79 (248)
.|++++|.++|+++.+... .+...+..+...+...|++++|..+++++.+.. +.+...|..+...+...| ++++|.+
T Consensus 35 ~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~ 112 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARR 112 (330)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3789999999999876543 356677778888889999999999999987753 345678888888999999 8999999
Q ss_pred HHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 80 QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 80 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
.|++..+.. +.+...|..+...+...|++++|...+++..+..... ...+..+ ...+...|+++.|...++...+..
T Consensus 113 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l-~~~~~~~~~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 113 YLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC-HLPMLYI-GLEYGLTNNSKLAERFFSQALSIA 189 (330)
T ss_dssp HHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-SHHHHHH-HHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc-HHHHHHH-HHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999988653 2256788889999999999999999999887664221 2222223 333667788899999999887764
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCC--------CCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHH
Q 039342 160 YGLGMRFYNALLEALWCLGLRERAARVLDEATKRG--------LFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMY 231 (248)
Q Consensus 160 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~ 231 (248)
. .+...+..+...+...|++++|...+++..+.. .+.+...+..+. ..+...|++++|...+++..
T Consensus 190 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la-----~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 190 P-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG-----HVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH-----HHHHHTTCHHHHHHHHHHHH
T ss_pred C-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH-----HHHHHhcCHHHHHHHHHHHH
Confidence 3 357788888899999999999999998876521 122233444444 66778889999988888877
Q ss_pred HH
Q 039342 232 EM 233 (248)
Q Consensus 232 ~~ 233 (248)
+.
T Consensus 264 ~~ 265 (330)
T 3hym_B 264 VL 265 (330)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 15
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.9e-13 Score=99.98 Aligned_cols=213 Identities=12% Similarity=0.077 Sum_probs=165.5
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhcCCh
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR--CDPN----ERTLEAVLSVYCFAGLV 74 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~t~~~ll~~~~~~g~~ 74 (248)
.|++++|.+.|++..+.. .+...|..+...+...|++++|.+.+++..+.. ..|+ ..+|..+...|.+.|++
T Consensus 18 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL 95 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence 378899999999888766 778889999999999999999999998886542 2223 57888888899999999
Q ss_pred hHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHH
Q 039342 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154 (248)
Q Consensus 75 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 154 (248)
++|.+.|++..+. .|+. ..+.+.|++++|...+++..... |........+...+...|+++.|...++.
T Consensus 96 ~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 96 KKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999888874 3442 34666788889999998887654 55554444444447778999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC-cchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 155 LNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 155 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
..+.... +..++..+...+...|++++|...+++..+. .|+ ...+..+. ..+...|++++|...+++..+.
T Consensus 165 a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 165 MIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKA-----TAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH-----HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHH-----HHHHHHhhHHHHHHHHHHHHHh
Confidence 8876533 6788999999999999999999999998775 343 33344443 6778889999999999888776
Q ss_pred H
Q 039342 234 F 234 (248)
Q Consensus 234 ~ 234 (248)
.
T Consensus 237 ~ 237 (258)
T 3uq3_A 237 D 237 (258)
T ss_dssp H
T ss_pred C
Confidence 4
No 16
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.58 E-value=5.3e-13 Score=103.74 Aligned_cols=220 Identities=10% Similarity=-0.022 Sum_probs=170.7
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|.++|+++.+... .+...|..+...+.+.|++++|.+.+++..+.. +.+..++..+...|...|++++|.+.
T Consensus 34 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 111 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALAS 111 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3789999999999987543 478889999999999999999999999997764 45778899999999999999999999
Q ss_pred HHHHHHCCCCcCHhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCchH-HhHHHHhcccccccch
Q 039342 81 FQEIKSSGILPSVMCYCML--------------LA-VYAKSNRWDDAYGLLDEMHTNRISNIH-QVTGQMIKGEFDDESN 144 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~ 144 (248)
+++..+.... +...+..+ .. .+...|++++|...+++..+.. |+. ..+..+.. .+...|+
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~-~~~~~~~ 187 (327)
T 3cv0_A 112 LRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQLHASLGV-LYNLSNN 187 (327)
T ss_dssp HHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHH-HHHHTTC
T ss_pred HHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHHHHHHHHH-HHHHhcc
Confidence 9999875321 23333333 22 3778889999999999998765 333 33333333 3677889
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC-cchhhhHHhhhhhhccccchHHHHH
Q 039342 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVHRMWEGGAYTAI 223 (248)
Q Consensus 145 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~g~~~~~ 223 (248)
++.|...++...+... .+..++..+...+...|++++|.+.+++..+. .|+ ...+..+. ..+...|++++|
T Consensus 188 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~-----~~~~~~g~~~~A 259 (327)
T 3cv0_A 188 YDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMA-----VSYSNMSQYDLA 259 (327)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH-----HHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHH-----HHHHHhccHHHH
Confidence 9999999999887643 35788999999999999999999999998764 343 33444444 677889999999
Q ss_pred HHHHHHHHHHH
Q 039342 224 SVWLNKMYEMF 234 (248)
Q Consensus 224 ~~~~~~m~~~~ 234 (248)
...+++..+..
T Consensus 260 ~~~~~~a~~~~ 270 (327)
T 3cv0_A 260 AKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999888764
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.57 E-value=9.7e-13 Score=102.39 Aligned_cols=220 Identities=10% Similarity=-0.070 Sum_probs=174.2
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
|++++|..+|+++.+... .+...|..+...+...| ++++|.+.|++..+.. +.+...|..+...+...|++++|.+.
T Consensus 70 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYP-SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp TCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHH
Confidence 789999999999987542 46788999999999999 9999999999997654 34567899999999999999999999
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC-
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG- 159 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~- 159 (248)
+++..+.. +.+...+..+...|...|++++|...+++..+.. |+.......+...+...|+++.|...++...+..
T Consensus 148 ~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 148 YFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 99998753 2245677789999999999999999999998764 4443333333334777889999999998887642
Q ss_pred -------CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHH
Q 039342 160 -------YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232 (248)
Q Consensus 160 -------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~ 232 (248)
...+..++..+...+...|++++|...+++..+.. +.+...+..+. ..+...|++++|...+++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la-----~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIG-----YIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHH-----HHHHHHTCHHHHHHHHHTTTT
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHH-----HHHHHhccHHHHHHHHHHHHc
Confidence 13346788999999999999999999999987642 22334444444 677889999999998887654
No 18
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.6e-12 Score=95.58 Aligned_cols=204 Identities=11% Similarity=-0.013 Sum_probs=153.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
+...|..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 56778888889999999999999999887654 3457788888899999999999999999887653 236778888889
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch
Q 039342 102 VYAKS-NRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180 (248)
Q Consensus 102 ~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 180 (248)
.+... |++++|...+++..+.+..|........+...+...|+++.|...++...+.... +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 99999 9999999999998874344544433333333467788899999999888776432 577788888899999999
Q ss_pred HHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 181 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
++|.+.+++..+..-..+...+..+. ..+...|+.+++..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGW-----KIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHH-----HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHH-----HHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999877642112333333332 5566788888888888887654
No 19
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.7e-12 Score=97.46 Aligned_cols=201 Identities=9% Similarity=-0.050 Sum_probs=161.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
...|..+...+...|++++|.+.|++..+.. +.+...+..+...|.+.|++++|.+.+++..+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678888899999999999999999987764 4567889999999999999999999999988753 2367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHH
Q 039342 103 YAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182 (248)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 182 (248)
|...|++++|...+++..+.+..|........+...+...|+++.|...++...+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987444565544444444446778899999999999887653 257788899999999999999
Q ss_pred HHHHHHHHHHCCCCCC-cchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 183 AARVLDEATKRGLFPE-LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 183 a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
|...+++..+. .|+ ...+..+. ..+...|+.++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQG--GGQNARSLLLGI-----RLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTT--SCCCHHHHHHHH-----HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CcCcHHHHHHHH-----HHHHHccCHHHHHHHHHHHHHH
Confidence 99999998764 333 33333333 5677889999999999998775
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.57 E-value=2e-13 Score=105.22 Aligned_cols=219 Identities=11% Similarity=0.087 Sum_probs=164.2
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|+++.|+..++........+.......+.++|...|+++.|...++. .-+|+..++..+...+.+.++.++|.+.
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 388999999888765433222234667788999999999999986654 2467788999999999999999999999
Q ss_pred HHHHHHCCCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 81 FQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 81 ~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
++++...+..|+ ...+..+-..+...|++++|++.+++ +.+...+..+... +...|+++.|...++.+.+..
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~-~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQI-LLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhhC
Confidence 999988776664 55666677899999999999999997 2333444444443 777899999999999998875
Q ss_pred CCCCHHHH---HHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHc
Q 039342 160 YGLGMRFY---NALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMM 236 (248)
Q Consensus 160 ~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~ 236 (248)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+. ..+.+.|++++|...+++..+. .
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la-----~~~~~~g~~~eA~~~l~~al~~--~ 230 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQA-----ACHMAQGRWEAAEGVLQEALDK--D 230 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHH-----HHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHHh--C
Confidence 443221 23344455569999999999999876 233444444444 6788999999999999998765 5
Q ss_pred CCCC
Q 039342 237 GEDL 240 (248)
Q Consensus 237 ~~~~ 240 (248)
|+.+
T Consensus 231 p~~~ 234 (291)
T 3mkr_A 231 SGHP 234 (291)
T ss_dssp TTCH
T ss_pred CCCH
Confidence 5443
No 21
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=2.1e-12 Score=96.92 Aligned_cols=193 Identities=14% Similarity=0.079 Sum_probs=158.3
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|.+.|+++.+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.++
T Consensus 50 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 127 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQR 127 (252)
T ss_dssp TTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHH
Confidence 378999999999988754 2468899999999999999999999999997764 34778899999999999999999999
Q ss_pred HHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHhHHHHhcccccccchHHHHHHHHHHHHhc
Q 039342 81 FQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI-HQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 81 ~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
+++..+.+..| +...+..+...+...|++++|...+++..+.. |. ...+..+.. .+...|+++.|...++...+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~-~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 128 LLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMAD-LLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHh
Confidence 99998743445 56788899999999999999999999988765 33 333333333 367788999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcch
Q 039342 159 GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR 201 (248)
Q Consensus 159 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 201 (248)
.. .+...+..+...+...|+.++|.++++++.+. .|+...
T Consensus 205 ~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 244 (252)
T 2ho1_A 205 GG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLE 244 (252)
T ss_dssp SC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHH
T ss_pred Cc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHH
Confidence 43 46778888999999999999999999998774 455433
No 22
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=4.4e-12 Score=93.16 Aligned_cols=198 Identities=13% Similarity=0.033 Sum_probs=159.5
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CChhHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA-GLVDESKE 79 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-g~~~~a~~ 79 (248)
.|++++|.+.|++..+... .+...|..+...+...|++++|.+.+++..+.. +.+..++..+...+... |++++|..
T Consensus 21 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~ 98 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMA 98 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHH
Confidence 3889999999999887542 468899999999999999999999999997764 45778899999999999 99999999
Q ss_pred HHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc
Q 039342 80 QFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 80 ~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
.+++..+.+..| +...+..+...+...|++++|...+++..+.. |+.......+...+...|+++.|...++...+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 99 YFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998843334 36788999999999999999999999998764 443333333333377788999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhh
Q 039342 159 GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNK 204 (248)
Q Consensus 159 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 204 (248)
....+...+..+...+...|+.+.+..+++.+.+. .|+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 177 VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 54246777888888899999999999999998754 465444433
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.56 E-value=6.9e-13 Score=105.02 Aligned_cols=222 Identities=10% Similarity=-0.009 Sum_probs=166.8
Q ss_pred CchHHHHH-HHHHHHHcCC-CC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 039342 2 GLYKECQA-ILSRMSESGV-AR--NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDES 77 (248)
Q Consensus 2 g~~~~a~~-~~~~m~~~g~-~~--~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 77 (248)
|++++|.+ .|++..+... .| +...+..+-..+.+.|++++|...|+++.+.. +.+..++..+..++.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45566666 5654433211 11 45678889999999999999999999998764 45778999999999999999999
Q ss_pred HHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHH--------------Hhcccccccc
Q 039342 78 KEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ--------------MIKGEFDDES 143 (248)
Q Consensus 78 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--------------~l~~~~~~~~ 143 (248)
.+.|++..+.. +.+..++..+...|...|++++|...++++.+............ .+...+ ..|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcc
Confidence 99999998764 33778999999999999999999999999987653221111110 222323 778
Q ss_pred hHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC-cchhhhHHhhhhhhccccchHHH
Q 039342 144 NWQMVEYVFDKLNCEGYGL-GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVHRMWEGGAYT 221 (248)
Q Consensus 144 ~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~g~~~ 221 (248)
+++.|...++.+.+..... +..++..+...+.+.|++++|...+++..+. .|+ ...+..+. ..+...|+++
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~-----~~~~~~g~~~ 268 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLG-----ATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH-----HHHHHTTCHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHH-----HHHHHcCCHH
Confidence 9999999999988764332 5888999999999999999999999998764 343 34444444 6778899999
Q ss_pred HHHHHHHHHHHH
Q 039342 222 AISVWLNKMYEM 233 (248)
Q Consensus 222 ~~~~~~~~m~~~ 233 (248)
+|...+++..+.
T Consensus 269 ~A~~~~~~al~~ 280 (368)
T 1fch_A 269 EAVAAYRRALEL 280 (368)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988775
No 24
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=7.5e-13 Score=97.62 Aligned_cols=199 Identities=12% Similarity=0.024 Sum_probs=148.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHH
Q 039342 20 ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99 (248)
Q Consensus 20 ~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 99 (248)
+++...+..+-..+.+.|++++|...|++..+.. +.+...+..+-.++.+.|++++|...|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4677888999999999999999999999987654 4567888899999999999999999999988753 2256788889
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHH
Q 039342 100 LAVYAKS-----------NRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYN 168 (248)
Q Consensus 100 i~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 168 (248)
-..+... |++++|+..|++..+.. |+.......+...+...|++++|...+++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 9999999 99999999999988764 5554444444444778899999999999998887 6888899
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHCCCCCC-cchhhhHHhhhhhhccccchHHHHHHHHHHHHH
Q 039342 169 ALLEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMY 231 (248)
Q Consensus 169 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~ 231 (248)
.+-.++...|++++|...|++..+. .|+ ...+..+. ..+...|+.++|...+++-.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la-----~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYA-----SALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHH-----HHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHH-----HHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999998764 454 23333333 66788999999888777543
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.55 E-value=2e-15 Score=120.54 Aligned_cols=191 Identities=16% Similarity=0.182 Sum_probs=57.1
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.+.++++.. +.+|..+..++.+.|++++|.+.|.+ .+|..+|..++.++...|++++|..++
T Consensus 17 ~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 17 GNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 678888888888833 35899999999999999999999865 367778999999999999999999977
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
+..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..++..+-.. |...|.|+.|...|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~-~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR-CYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC-----------------CTTTHHHHHHHT------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHH-HHHcCCHHHHHHHHHHh------
Confidence 776664 4557788889999999999988888885 2566667666666 77778888888888765
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhh-------------------------cccc
Q 039342 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVH-------------------------RMWE 216 (248)
Q Consensus 162 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-------------------------~~~~ 216 (248)
..|..+..++.+.|+++.|.+.+.++ .+..+|..++.+|... .|.+
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD 219 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHH
Confidence 35777778888888888877777776 2455666666444433 3666
Q ss_pred chHHHHHHHHHHH
Q 039342 217 GGAYTAISVWLNK 229 (248)
Q Consensus 217 ~g~~~~~~~~~~~ 229 (248)
.|+++++..+++.
T Consensus 220 ~G~~eEai~lLe~ 232 (449)
T 1b89_A 220 RGYFEELITMLEA 232 (449)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7777776665544
No 26
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.2e-12 Score=106.44 Aligned_cols=85 Identities=8% Similarity=0.094 Sum_probs=73.0
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|.+.|+++.+.. |+...|..+..++.+.|++++|.+.++++.+.+ +.+...|..+..+|.+.|++++|...
T Consensus 19 ~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 388999999999998755 789999999999999999999999999988765 45667888999999999999999999
Q ss_pred HHHHHHCC
Q 039342 81 FQEIKSSG 88 (248)
Q Consensus 81 ~~~m~~~~ 88 (248)
|+++.+.+
T Consensus 96 ~~~~~~~~ 103 (514)
T 2gw1_A 96 LSVLSLNG 103 (514)
T ss_dssp HHHHHHSS
T ss_pred HHHHHhcC
Confidence 98886553
No 27
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.53 E-value=1.1e-11 Score=97.31 Aligned_cols=226 Identities=11% Similarity=0.046 Sum_probs=174.1
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|.+.|++..+... .+...|..+...+...|++++|...+++..+.. +-+...+..+...+.+.|++++|...
T Consensus 16 ~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 93 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDD 93 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHH
Confidence 3899999999999987543 468899999999999999999999999998763 34678899999999999999999999
Q ss_pred HHHHHHCCCC--cCHhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHH
Q 039342 81 FQEIKSSGIL--PSVMCYCML------------LAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146 (248)
Q Consensus 81 ~~~m~~~~~~--p~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (248)
|++..+.... .+...+..+ ...+...|++++|...+++..+.. |+.......+...+...|+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3ieg_A 94 FKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPR 171 (359)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHH
Confidence 9999876320 134445444 578889999999999999998764 444434444444477789999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcch-hhhHHh-------hhhhhccccch
Q 039342 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFR-HNKLVW-------SVDVHRMWEGG 218 (248)
Q Consensus 147 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~-------~~~~~~~~~~g 218 (248)
.|...++...+.. +.+..++..+...+...|++++|.+.+++..+. .|+... +..+.. ......+.+.|
T Consensus 172 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (359)
T 3ieg_A 172 KAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDG 248 (359)
T ss_dssp HHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999988764 336788999999999999999999999998764 344322 111100 01124467788
Q ss_pred HHHHHHHHHHHHHHH
Q 039342 219 AYTAISVWLNKMYEM 233 (248)
Q Consensus 219 ~~~~~~~~~~~m~~~ 233 (248)
++++|...+++..+.
T Consensus 249 ~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 249 RYTDATSKYESVMKT 263 (359)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999988887765
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.53 E-value=3e-12 Score=101.43 Aligned_cols=201 Identities=11% Similarity=-0.025 Sum_probs=161.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
+...|..+...+.+.|++++|.+.|+++.+.. +.+..+|..+..+|.+.|++++|.+.|++..+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568899999999999999999999998764 4578899999999999999999999999998753 235789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCchHHhHHH----------HhcccccccchHHHHHHHHHHHHhcCCC-CCHHHHHHH
Q 039342 102 VYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ----------MIKGEFDDESNWQMVEYVFDKLNCEGYG-LGMRFYNAL 170 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----------~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l 170 (248)
.|...|++++|...|++..+.. |+...... .+...+...|+++.|...++...+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998754 43322221 1233477889999999999999887433 268899999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHCCCCCC-cchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 171 LEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
...+...|++++|.+.|++..+. .|+ ..++..+. ..+...|++++|...+++..+.
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLG-----ATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH-----HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999998874 343 34444444 7788899999999999988775
No 29
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.51 E-value=1.5e-11 Score=96.64 Aligned_cols=151 Identities=9% Similarity=-0.036 Sum_probs=79.1
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH------------H
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP----NERTLEAV------------L 65 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~t~~~l------------l 65 (248)
|++++|.+.|++..+... .+...|..+...+.+.|++++|.+.+++..+. .| +...+..+ .
T Consensus 51 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (359)
T 3ieg_A 51 GKSKAALPDLTKVIALKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQA 127 (359)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666655331 24566666666666666666666666666543 23 22223222 3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchH
Q 039342 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145 (248)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (248)
..+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. |+.......+...+...|++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 45556666666666666655432 1244555556666666666666666666655432 22222222222224444555
Q ss_pred HHHHHHHHHHHhc
Q 039342 146 QMVEYVFDKLNCE 158 (248)
Q Consensus 146 ~~a~~~~~~m~~~ 158 (248)
+.|...++...+.
T Consensus 205 ~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 205 ELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 5555555555443
No 30
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.1e-12 Score=106.62 Aligned_cols=221 Identities=10% Similarity=-0.073 Sum_probs=174.3
Q ss_pred CchHHHHHHHHHHHH-----cCC--------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSE-----SGV--------ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68 (248)
Q Consensus 2 g~~~~a~~~~~~m~~-----~g~--------~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 68 (248)
|++++|.+.|+++.+ ..- +.+...|..+...+...|++++|...+++..+.+ |+...+..+...+
T Consensus 203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~ 280 (514)
T 2gw1_A 203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIM 280 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHH
Confidence 789999999999877 311 2346688889999999999999999999998765 4488899999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHH
Q 039342 69 CFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMV 148 (248)
Q Consensus 69 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (248)
...|++++|.+.+++..+.. +.+..++..+...+...|++++|...+++..+.... +...+..+... +...|+++.|
T Consensus 281 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~~~~~~A 357 (514)
T 2gw1_A 281 ADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACL-AYRENKFDDC 357 (514)
T ss_dssp HTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHH-TTTTTCHHHH
T ss_pred HHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHH-HHHcCCHHHH
Confidence 99999999999999998763 236778999999999999999999999999876522 22334444333 7788999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCC-CCC----cchhhhHHhhhhhhcccc---chHH
Q 039342 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGL-FPE----LFRHNKLVWSVDVHRMWE---GGAY 220 (248)
Q Consensus 149 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~~~~~---~g~~ 220 (248)
...++...+... .+..++..+...+.+.|++++|...++++.+..- .++ ...+..+. ..+.. .|++
T Consensus 358 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~ 431 (514)
T 2gw1_A 358 ETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA-----TLLTRNPTVENF 431 (514)
T ss_dssp HHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH-----HHHHTSCCTTHH
T ss_pred HHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH-----HHHhhhhhcCCH
Confidence 999999887643 2567888999999999999999999998875311 111 11344444 66677 8999
Q ss_pred HHHHHHHHHHHHH
Q 039342 221 TAISVWLNKMYEM 233 (248)
Q Consensus 221 ~~~~~~~~~m~~~ 233 (248)
++|...+++..+.
T Consensus 432 ~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 432 IEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988765
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.50 E-value=1.1e-12 Score=101.95 Aligned_cols=224 Identities=9% Similarity=-0.048 Sum_probs=167.2
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAV--------------LS 66 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l--------------l~ 66 (248)
.|++++|.+.|++..+.. +.+...|..+...+...|++++|.+.+++..+..- .+...+..+ ..
T Consensus 68 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 68 NEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------
T ss_pred cCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 378999999999998754 24688999999999999999999999999976532 122222222 22
Q ss_pred -HHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchH
Q 039342 67 -VYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145 (248)
Q Consensus 67 -~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (248)
.+...|++++|.+.+++..+.. +.+...+..+...+.+.|++++|...+++..+.. |+.......+...+...|++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCH
Confidence 3778899999999999998753 2367889999999999999999999999998764 44333333333336678899
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCc--------chhhhHHhhhhhhccccc
Q 039342 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL--------FRHNKLVWSVDVHRMWEG 217 (248)
Q Consensus 146 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--------~t~~~li~~~~~~~~~~~ 217 (248)
+.|...++...+... .+..++..+...+...|++++|.+.+++..+.. |+. ...+...+..+...+...
T Consensus 223 ~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 223 QEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ--VGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccccccccchhhcCHHHHHHHHHHHHhc
Confidence 999999999887643 357889999999999999999999999987642 220 011233334444778889
Q ss_pred hHHHHHHHHHHHHHH
Q 039342 218 GAYTAISVWLNKMYE 232 (248)
Q Consensus 218 g~~~~~~~~~~~m~~ 232 (248)
|+.++|...+++..+
T Consensus 300 g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 300 NRPDLVELTYAQNVE 314 (327)
T ss_dssp TCHHHHHHHTTCCSH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999888765443
No 32
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=4.4e-12 Score=94.44 Aligned_cols=185 Identities=14% Similarity=0.113 Sum_probs=84.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.+.|++..+.. +.+...|..+...+.+.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+
T Consensus 37 ~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 114 (243)
T 2q7f_A 37 GDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMF 114 (243)
T ss_dssp -----CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHH
Confidence 44455555555554422 1234455555555555555555555555554432 224445555555555555555555555
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
++..+.. +.+...+..+...+.+.|++++|...+++..+.. |+.......+...+...|+++.|...++...+...
T Consensus 115 ~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 190 (243)
T 2q7f_A 115 EKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP- 190 (243)
T ss_dssp HHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-
Confidence 5554432 1234445555555555555555555555554432 21111111111223344445555555555444321
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 162 LGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 162 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
.+..++..+...+...|++++|.+.+++..+
T Consensus 191 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 191 GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 1344455555555555555555555555443
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=5.8e-12 Score=95.55 Aligned_cols=223 Identities=9% Similarity=-0.089 Sum_probs=158.2
Q ss_pred CchHHHHHHHHHHHHcCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 039342 2 GLYKECQAILSRMSESGV---ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~---~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 78 (248)
|++++|.+.|+++.+... +.+...|..+...+...|++++|.+.|++..+.. +.+..+|..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 688999999999987532 1256789999999999999999999999998764 356889999999999999999999
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc
Q 039342 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
+.|++..+.. +.+...+..+...|.+.|++++|...|++..+.. |+.......+.. +...++++.|...++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYL-AEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH-HHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHH-HHHhcCHHHHHHHHHHHHhc
Confidence 9999998753 2257889999999999999999999999998754 443333222222 34557888898888766654
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 159 GYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 159 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
.. ++...+. +...+...++.++|.+.+.+..+. .|+........+..+...+...|++++|...+++..+.
T Consensus 174 ~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 174 SD-KEQWGWN-IVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp SC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 22 2333333 555666666677777777765432 12110011222222335666777777777777766543
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=9.3e-12 Score=91.72 Aligned_cols=183 Identities=12% Similarity=0.069 Sum_probs=140.9
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---------
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA--------- 71 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--------- 71 (248)
.|++++|...|++..+... .+...|..+-..+.+.|++++|...+++..+.. +-+...+..+-.++.+.
T Consensus 18 ~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~ 95 (217)
T 2pl2_A 18 LGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRER 95 (217)
T ss_dssp TTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcc
Confidence 3889999999999887542 468899999999999999999999999998764 44678888999999999
Q ss_pred --CChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHH
Q 039342 72 --GLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMV 148 (248)
Q Consensus 72 --g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (248)
|++++|...|++..+. .| +...+..+-..+...|++++|+..|++..+.. .+...+..+-.. +...|++++|
T Consensus 96 ~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~-~~~~g~~~~A 170 (217)
T 2pl2_A 96 GKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL-YLSMGRLDEA 170 (217)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH-HHHHTCHHHH
T ss_pred cccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH-HHHcCCHHHH
Confidence 9999999999999875 34 57788999999999999999999999998877 444444444444 7778999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 149 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
...++...+.... +...+..+...+...|++++|.+.+++..
T Consensus 171 ~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 171 LAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999998886433 67788889999999999999999998754
No 35
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=1.9e-10 Score=87.49 Aligned_cols=214 Identities=7% Similarity=-0.070 Sum_probs=167.9
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQ----GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF----AG 72 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g 72 (248)
.|++++|.+.|++..+. -+...+..+-..|.. .+++++|.+.|++..+.+ +...+..+-..|.. .+
T Consensus 19 ~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~ 92 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQ 92 (273)
T ss_dssp TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCccc
Confidence 37899999999999872 356788888889999 999999999999998876 77888889999999 99
Q ss_pred ChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCchHHhHHHHhccccc----ccch
Q 039342 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK----SNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD----DESN 144 (248)
Q Consensus 73 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~----~~~~ 144 (248)
++++|.+.|++..+.+ +...+..+-..|.. .+++++|+..|++..+.+ +. ..+..+-.. +. ..++
T Consensus 93 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~-~a~~~lg~~-~~~~~~~~~~ 165 (273)
T 1ouv_A 93 NTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DG-DGCTILGSL-YDAGRGTPKD 165 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH-HHHHHHHHH-HHHTSSSCCC
T ss_pred CHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cH-HHHHHHHHH-HHcCCCCCCC
Confidence 9999999999998875 67888899999999 999999999999998876 22 222222211 22 3788
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHH
Q 039342 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEALWC----LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220 (248)
Q Consensus 145 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~ 220 (248)
++.|...++...+.+ +...+..+-..|.. .+++++|.+.|++..+.+- ...+..+-.. ...+....++.
T Consensus 166 ~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~-~~~g~~~~~~~ 238 (273)
T 1ouv_A 166 LKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAM-QYNGEGVTRNE 238 (273)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHH-HHTTSSSSCCS
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHH-HHcCCCcccCH
Confidence 999999999988775 45778888889999 9999999999999887643 2233333311 11233337888
Q ss_pred HHHHHHHHHHHHHH
Q 039342 221 TAISVWLNKMYEMF 234 (248)
Q Consensus 221 ~~~~~~~~~m~~~~ 234 (248)
++|..++++-.+.+
T Consensus 239 ~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 239 KQAIENFKKGCKLG 252 (273)
T ss_dssp TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 89999888877664
No 36
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.45 E-value=1.2e-11 Score=102.86 Aligned_cols=221 Identities=11% Similarity=-0.039 Sum_probs=168.4
Q ss_pred CchHHHHHHHHHHHHcCCCCC--------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 039342 2 GLYKECQAILSRMSESGVARN--------SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL 73 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~--------~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 73 (248)
|++++|.++|+++.+.. |+ ..+|..+-..+...|++++|.+.+++..+. .|+...+..+...+.+.|+
T Consensus 216 ~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcC
Confidence 47889999999987644 33 335777778889999999999999999875 4668899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-HhHHHHhcccccccchHHHHHHHH
Q 039342 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH-QVTGQMIKGEFDDESNWQMVEYVF 152 (248)
Q Consensus 74 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 152 (248)
+++|.+.+++..+.. +.+..+|..+...+...|++++|...|++..+.. |+. ..+..+. ..+...|+++.|...+
T Consensus 292 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la-~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLA-CLLYKQGKFTESEAFF 367 (537)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHH-HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 999999999998753 2367889999999999999999999999998764 333 3333333 3367789999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCc-chhhhHH-hhhhhhccccc----------hHH
Q 039342 153 DKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL-FRHNKLV-WSVDVHRMWEG----------GAY 220 (248)
Q Consensus 153 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li-~~~~~~~~~~~----------g~~ 220 (248)
+...+... .+...+..+...+...|++++|.+.|++..+.. |+. ..+..+. .......+... |++
T Consensus 368 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 444 (537)
T 3fp2_A 368 NETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444 (537)
T ss_dssp HHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH
Confidence 99888743 356788899999999999999999999987532 211 1111110 11111234445 999
Q ss_pred HHHHHHHHHHHHH
Q 039342 221 TAISVWLNKMYEM 233 (248)
Q Consensus 221 ~~~~~~~~~m~~~ 233 (248)
++|...+++..+.
T Consensus 445 ~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 445 NAAIKLLTKACEL 457 (537)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988775
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=2e-11 Score=92.50 Aligned_cols=231 Identities=7% Similarity=-0.050 Sum_probs=171.1
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD--PNERTLEAVLSVYCFAGLVDESK 78 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~g~~~~a~ 78 (248)
.|++++|.+.|++..+... .+...|..+...+...|++++|.+.+++..+..-. .....|..+-..+.+.|++++|.
T Consensus 16 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 3899999999999987542 35668999999999999999999999999874322 22445889999999999999999
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHh-HHHHhcccccccchHHHHHHHHHHHHh
Q 039342 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV-TGQMIKGEFDDESNWQMVEYVFDKLNC 157 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~ 157 (248)
+.|++..+.. +.+..++..+-..|...|++++|+..|++..+.. |+... +..+-...+. .++++.|...++...+
T Consensus 95 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~ 170 (272)
T 3u4t_A 95 QQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYY-NKEYVKADSSFVKVLE 170 (272)
T ss_dssp HHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999998753 2256789999999999999999999999887653 44333 3333213233 3489999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHCC-CCCCcc-hhhhHHhhhhhhccccchHHHHHHHHHHHHHH
Q 039342 158 EGYGLGMRFYNALLEALWCLGL---RERAARVLDEATKRG-LFPELF-RHNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232 (248)
Q Consensus 158 ~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~~~-t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~ 232 (248)
.... +...+..+...+...|+ +++|...+++..+.. -.|+.. ....-.+..+-..|...|++++|...+++..+
T Consensus 171 ~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 171 LKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6433 46777778888888888 888998888876531 123321 11112222333667789999999999998877
Q ss_pred HHHcCCC
Q 039342 233 MFMMGED 239 (248)
Q Consensus 233 ~~~~~~~ 239 (248)
. .|+.
T Consensus 250 ~--~p~~ 254 (272)
T 3u4t_A 250 L--DPTN 254 (272)
T ss_dssp H--CTTC
T ss_pred c--CccH
Confidence 5 4543
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=4.4e-12 Score=94.45 Aligned_cols=202 Identities=7% Similarity=-0.041 Sum_probs=144.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHH
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 100 (248)
.....|..+-..+...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 456778888889999999999999999998753 4568889999999999999999999999988753 23678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch
Q 039342 101 AVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180 (248)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 180 (248)
..+...|++++|...+++..+.... +...+..+. ..+...|+++.|...++...+... .+...+..+...+.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a-~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLG-TVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHH-HHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999876522 223333333 336778899999999999887643 3677888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 181 ERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 181 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
++|.+.+++..+.. +.+..++..+. ..+...|++++|...+++..+.
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la-----~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAG-----VTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHH-----HHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHH-----HHHHHccCHHHHHHHHHHHHcc
Confidence 99999999987652 22233344444 6778899999999999988775
No 39
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=1.4e-10 Score=90.05 Aligned_cols=221 Identities=10% Similarity=0.024 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 039342 5 KECQAILSRMSESGVARNSDSFNAVIEAFR-------QGGRF-------EEAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70 (248)
Q Consensus 5 ~~a~~~~~~m~~~g~~~~~~~y~~li~~~~-------~~~~~-------~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 70 (248)
++|..+|++..+.. +-++..|..+...+. +.|++ ++|..+|++..+.--+-+...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999887643 346788888888776 35886 8999999998863123355689999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCcC-Hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHH
Q 039342 71 AGLVDESKEQFQEIKSSGILPS-VM-CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMV 148 (248)
Q Consensus 71 ~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (248)
.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+... ++...+.......+...|+++.|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999874 454 33 899999999999999999999999987642 22233332222112236889999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCC-CCCCcchhhhHHhhhhhhccccchHHHHHHHHH
Q 039342 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG-LFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227 (248)
Q Consensus 149 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~ 227 (248)
..+|+...+... -+...|..++..+.+.|+.++|..+|++..... +.|+. ..-+|......+.+.|+.+.+..++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~---~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK---SGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG---CHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH---HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999998877633 267888999999999999999999999998863 56642 1222333335566789999999998
Q ss_pred HHHHHH
Q 039342 228 NKMYEM 233 (248)
Q Consensus 228 ~~m~~~ 233 (248)
++..+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888766
No 40
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.43 E-value=2.8e-11 Score=100.55 Aligned_cols=219 Identities=12% Similarity=0.062 Sum_probs=164.0
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.+.|++..+.. |+...|..+...+...|++++|.+.+++..+.. +.+..+|..+...+...|++++|.+.|
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 78899999999988743 567888888899999999999999999987654 356788889999999999999999999
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC--
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG-- 159 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-- 159 (248)
++..+.. +.+...+..+...+...|++++|...+++..+.. |+.......+...+...|+++.|...++...+..
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9988753 2246788889999999999999999999987764 4333233333333667788899999988876542
Q ss_pred ---CCCCHHHHHHHHHHHHhc----------CchHHHHHHHHHHHHCCCCCC-cchhhhHHhhhhhhccccchHHHHHHH
Q 039342 160 ---YGLGMRFYNALLEALWCL----------GLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVHRMWEGGAYTAISV 225 (248)
Q Consensus 160 ---~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~g~~~~~~~ 225 (248)
.......+......+... |++++|...|++..+. .|+ ...+..+. ..+.+.|+.++|..
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~-----~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLA-----QLKLQMEKIDEAIE 483 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH-----HHHHHTTCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHH-----HHHHHhccHHHHHH
Confidence 112223344455667777 9999999999988764 343 33333343 66778889999888
Q ss_pred HHHHHHHH
Q 039342 226 WLNKMYEM 233 (248)
Q Consensus 226 ~~~~m~~~ 233 (248)
.+++..+.
T Consensus 484 ~~~~al~~ 491 (537)
T 3fp2_A 484 LFEDSAIL 491 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877665
No 41
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=1.6e-11 Score=94.71 Aligned_cols=212 Identities=12% Similarity=0.052 Sum_probs=155.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------C
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-------RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS------G 88 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~------~ 88 (248)
+..+|..+...+...|++++|..++++..+. .-+.....+..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4678888999999999999999999998663 23345577888899999999999999999988753 2
Q ss_pred CCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc---
Q 039342 89 ILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN------RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE--- 158 (248)
Q Consensus 89 ~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--- 158 (248)
-.| ...++..+...|...|++++|...+++..+. +..|........+...+...|+++.|...++...+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 223 4578889999999999999999999988754 333444444444444477888999999999887764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHCC-------CCCC-----------------------------
Q 039342 159 ---GYGL-GMRFYNALLEALWCLGLRERAARVLDEATKRG-------LFPE----------------------------- 198 (248)
Q Consensus 159 ---~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-------~~p~----------------------------- 198 (248)
+..| ...++..+...+...|++++|.+.+++..+.. ..+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2233 34567888899999999999999999877420 0000
Q ss_pred -------cchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 199 -------LFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 199 -------~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
.......++..+...|.+.|++++|.+.+++..+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 01112233334447788999999999999887665
No 42
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=2e-11 Score=94.08 Aligned_cols=192 Identities=10% Similarity=0.085 Sum_probs=148.6
Q ss_pred CCchHHHHHHHHHHHHc-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHH
Q 039342 1 GGLYKECQAILSRMSES-------GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV------R-CDPNERTLEAVLS 66 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~-------g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~------~-~~p~~~t~~~ll~ 66 (248)
.|++++|..+|++..+. ..+.....+..+-..|...|++++|...+++..+. + -+....++..+..
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 37899999999988763 23345678899999999999999999999998654 2 2334577888999
Q ss_pred HHHhcCChhHHHHHHHHHHHC------CCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCchHHhHHH
Q 039342 67 VYCFAGLVDESKEQFQEIKSS------GILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN------RISNIHQVTGQ 133 (248)
Q Consensus 67 ~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~ 133 (248)
.|...|++++|.+.+++..+. +-.| ....+..+...+...|++++|+..+++..+. +..|.......
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN 199 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999998753 2223 4567888999999999999999999998764 33455444444
Q ss_pred HhcccccccchHHHHHHHHHHHHhc------------------------------------------------CCCCCHH
Q 039342 134 MIKGEFDDESNWQMVEYVFDKLNCE------------------------------------------------GYGLGMR 165 (248)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~m~~~------------------------------------------------~~~p~~~ 165 (248)
.+...+...|+++.|...+++..+. ....+..
T Consensus 200 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 279 (311)
T 3nf1_A 200 NLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTT 279 (311)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHH
Confidence 4444477889999999999887753 1122456
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 166 FYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 166 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
++..+...|.+.|++++|.++|++..+
T Consensus 280 ~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 280 TLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788899999999999999999998654
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=3.8e-11 Score=91.02 Aligned_cols=210 Identities=12% Similarity=0.000 Sum_probs=154.3
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.+.|++..+... .+...|..+...+...|++++|.+.|++..+.. +.+...+..+...|.+.|++++|.+.|
T Consensus 57 ~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 134 (275)
T 1xnf_A 57 GLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDL 134 (275)
T ss_dssp TCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHH
Confidence 789999999999987543 468899999999999999999999999998764 346788999999999999999999999
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
++..+. .|+.......+..+...|++++|...+++..... |+......+... +...+..+.+...+....+....
T Consensus 135 ~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~ 209 (275)
T 1xnf_A 135 LAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWNIVEF-YLGNISEQTLMERLKADATDNTS 209 (275)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHHHHHH-HTTSSCHHHHHHHHHHHCCSHHH
T ss_pred HHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHHHHHHH-HHHhcCHHHHHHHHHHHhccccc
Confidence 999875 4555555566666678899999999998876653 222222223333 44445567888888776554221
Q ss_pred --C-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHH
Q 039342 162 --L-GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227 (248)
Q Consensus 162 --p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~ 227 (248)
| +..++..+...+.+.|++++|...|++..+. .|+.. .... ..+...|+++++..-+
T Consensus 210 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~--~~~~-----~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 210 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF--VEHR-----YALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC--HHHH-----HHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhH--HHHH-----HHHHHHHHHHhhHHHH
Confidence 1 2577889999999999999999999998875 45321 1112 3345677777765544
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.37 E-value=7.6e-11 Score=88.34 Aligned_cols=193 Identities=11% Similarity=0.028 Sum_probs=156.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCcC----Hhh
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG--ILPS----VMC 95 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~ 95 (248)
....|..+-..+...|++++|...|++..+.. .+...|..+..+|...|++++|.+.+++..+.. ..|+ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678888999999999999999999998887 888999999999999999999999999987642 1112 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039342 96 YCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175 (248)
Q Consensus 96 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 175 (248)
|..+...+...|++++|...|++..+.. |.... +...++++.+...++....... .+...+..+...+.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~--------~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTADI--------LTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH--------HHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chhHH--------HHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHH
Confidence 9999999999999999999999998754 33222 3445778999999998887532 25667888999999
Q ss_pred hcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
..|++++|.+.+++..+.. +.+...+..+. ..+...|++++|...+++..+.
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRA-----AALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH-----HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHH-----HHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999988642 22333344443 6778899999999999988775
No 45
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=5.9e-11 Score=97.64 Aligned_cols=214 Identities=9% Similarity=-0.072 Sum_probs=165.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 039342 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRF-EEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQ 82 (248)
Q Consensus 4 ~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 82 (248)
++++.+.+++..... +.+...|..+-..+...|++ ++|.+.|++..+.. +-+...|..+-.+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556667777655432 24788899999999999999 99999999997764 3457899999999999999999999999
Q ss_pred HHHHCCCCcCHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCchHHhHHHHhccccccc--------chH
Q 039342 83 EIKSSGILPSVMCYCMLLAVYAKS---------NRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDE--------SNW 145 (248)
Q Consensus 83 ~m~~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 145 (248)
+..+. .|+...+..+-..|... |++++|+..|++..+.. |+.......+...+... +++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99876 47778899999999999 99999999999988764 44433333333335455 889
Q ss_pred HHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcc-hhhhHHhhhhhhccccchHHHH
Q 039342 146 QMVEYVFDKLNCEGYG--LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF-RHNKLVWSVDVHRMWEGGAYTA 222 (248)
Q Consensus 146 ~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~g~~~~ 222 (248)
+.|...|+...+.... -+...|..+-.+|...|++++|.+.|++..+. .|+.. .+..+- ..+...|++++
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~-----~~~~~lg~~~e 310 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQ-----QLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH-----HHHHHHHHHHH
Confidence 9999999998886431 37888999999999999999999999998764 45422 222232 55667788888
Q ss_pred HHHHHHHH
Q 039342 223 ISVWLNKM 230 (248)
Q Consensus 223 ~~~~~~~m 230 (248)
+...+.++
T Consensus 311 Ai~~~~~~ 318 (474)
T 4abn_A 311 LLESKGKT 318 (474)
T ss_dssp HHHHTTTC
T ss_pred HHHHhccc
Confidence 77654443
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=3.5e-10 Score=80.68 Aligned_cols=171 Identities=18% Similarity=0.175 Sum_probs=138.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHH
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 100 (248)
-++..|..+-..|.+.|++++|.+.|++..+.. +-+...+..+..+|.+.|++++|...++...... +.+...+..+-
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 367889999999999999999999999987764 3467888999999999999999999999987653 22567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch
Q 039342 101 AVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180 (248)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 180 (248)
..+...++++.|...+.+..+.. |+.......+...+...|++++|...+++..+.... +..+|..+-.+|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCH
Confidence 88999999999999999887654 444444444444477788999999999988876533 677888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 039342 181 ERAARVLDEATKRGLFPE 198 (248)
Q Consensus 181 ~~a~~~~~~m~~~g~~p~ 198 (248)
++|.+.|++..+. .|+
T Consensus 158 ~~A~~~~~~al~~--~p~ 173 (184)
T 3vtx_A 158 DEAVKYFKKALEK--EEK 173 (184)
T ss_dssp HHHHHHHHHHHHT--THH
T ss_pred HHHHHHHHHHHhC--Ccc
Confidence 9999999988764 454
No 47
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=3.3e-11 Score=91.47 Aligned_cols=156 Identities=10% Similarity=0.060 Sum_probs=115.7
Q ss_pred CchHHHHHHHHHHHH-------cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSE-------SGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV------RC-DPNERTLEAVLSV 67 (248)
Q Consensus 2 g~~~~a~~~~~~m~~-------~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~t~~~ll~~ 67 (248)
|++++|++.|++..+ ...+....+|..+-..|...|++++|...+++..+. +- +....++..+...
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 556666666665543 222335778999999999999999999999998654 22 2345678889999
Q ss_pred HHhcCChhHHHHHHHHHHHC------CCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCchHHhHHHH
Q 039342 68 YCFAGLVDESKEQFQEIKSS------GILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN------RISNIHQVTGQM 134 (248)
Q Consensus 68 ~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~~ 134 (248)
|...|++++|.+.+++..+. .-.| ...++..+...|...|++++|...+++..+. +-.|........
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999988753 1123 4678889999999999999999999998765 223444433334
Q ss_pred hcccccccchHHHHHHHHHHHHh
Q 039342 135 IKGEFDDESNWQMVEYVFDKLNC 157 (248)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~m~~ 157 (248)
+...+...|+++.|...+++..+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44447778889999998887765
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.32 E-value=4.5e-10 Score=89.69 Aligned_cols=214 Identities=9% Similarity=-0.055 Sum_probs=160.9
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR-FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
|++++|++.|++..+... -+...|+.+-..+.+.|+ +++|++.|++..+.. +-+...|+.+-.++.+.|++++|...
T Consensus 111 g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~ 188 (382)
T 2h6f_A 111 ERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEF 188 (382)
T ss_dssp CCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 789999999999987542 368899999999999996 999999999998765 34778999999999999999999999
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-HhHHHHhcccccc-cchHHHH-----HHHHH
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH-QVTGQMIKGEFDD-ESNWQMV-----EYVFD 153 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~a-----~~~~~ 153 (248)
|++..+... -+...|..+-.++.+.|++++|+..|++..+.. |+. ..++.+-.. +.. .+..+.| ...++
T Consensus 189 ~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~-l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 189 IADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFV-ISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHH-HHHTTCSCSHHHHHHHHHHHH
T ss_pred HHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHH-HHHhcCcchHHHHHHHHHHHH
Confidence 999987532 267899999999999999999999999998765 433 333333222 323 4443444 46677
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHCCCCCC-cchhhhHHhhhhhhccccc--------h-HHH
Q 039342 154 KLNCEGYGLGMRFYNALLEALWCLG--LRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVHRMWEG--------G-AYT 221 (248)
Q Consensus 154 ~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~--------g-~~~ 221 (248)
........ +...|+.+...+...| ++++|.+.+.++ + ..|+ ...+..+. ..|.+. + ..+
T Consensus 265 ~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La-----~~~~~~~~~~~~~~~~~~~ 335 (382)
T 2h6f_A 265 EMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLV-----DIYEDMLENQCDNKEDILN 335 (382)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHH-----HHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHH-----HHHHHHhcccccchHHHHH
Confidence 76665433 5678888888888888 689999999887 2 3444 33444444 333343 3 358
Q ss_pred HHHHHHHHH
Q 039342 222 AISVWLNKM 230 (248)
Q Consensus 222 ~~~~~~~~m 230 (248)
+|..+++++
T Consensus 336 ~A~~~~~~l 344 (382)
T 2h6f_A 336 KALELCEIL 344 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888876
No 49
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=4.9e-10 Score=79.42 Aligned_cols=165 Identities=14% Similarity=0.079 Sum_probs=124.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
...|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567778888889999999999998886543 3567888889999999999999999999987653 2367788888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHH
Q 039342 103 YAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER 182 (248)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 182 (248)
+...|++++|...+++..+.. |+.......+...+...|+++.|...++...+... .+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999887653 33222222222335567777888888877766542 356677778888888888888
Q ss_pred HHHHHHHHHH
Q 039342 183 AARVLDEATK 192 (248)
Q Consensus 183 a~~~~~~m~~ 192 (248)
|.+.+++..+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887664
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=2.4e-09 Score=83.02 Aligned_cols=184 Identities=10% Similarity=0.030 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCChhHHHHHH
Q 039342 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN-ER-TLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 4 ~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
.++|..+|++..+.-.+-+...|..+...+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3899999999887312235679999999999999999999999999874 454 33 8999999999999999999999
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCchHH-hHHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYA-KSNRWDDAYGLLDEMHTNRISNIHQ-VTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
++..+.. +++...|........ ..|+.++|..+|++..+.. |+.. .+..+. ......|+++.|..+|+......
T Consensus 158 ~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYI-DYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHH-HHHHHCCCHHHHHHHHHHHHhcc
Confidence 9998764 234445544433322 3699999999999987653 4433 333333 33667789999999999999873
Q ss_pred -CCC--CHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 160 -YGL--GMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 160 -~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
..| ....|..++....+.|+.+.|..+++++.+.
T Consensus 234 ~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455 4678889999999999999999999998764
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.27 E-value=5.8e-09 Score=79.17 Aligned_cols=177 Identities=10% Similarity=0.031 Sum_probs=147.0
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCC
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQ----GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF----AGL 73 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~ 73 (248)
|++++|.+.|++..+.+ +...+..+-..|.. .+++++|.+.|++..+.+ +...+..+-..|.+ .++
T Consensus 56 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~ 129 (273)
T 1ouv_A 56 KNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRD 129 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccC
Confidence 68999999999998865 78889999999999 999999999999998875 77888899999999 999
Q ss_pred hhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccc----cchH
Q 039342 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAK----SNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDD----ESNW 145 (248)
Q Consensus 74 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~ 145 (248)
+++|.+.|++..+.+ +...+..+-..|.. .+++++|+..|++..+.+.. ..+..+-.. +.. .+++
T Consensus 130 ~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~a~~~lg~~-~~~g~~~~~~~ 202 (273)
T 1ouv_A 130 FKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDS---PGCFNAGNM-YHHGEGATKNF 202 (273)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHH-HHHTCSSCCCH
T ss_pred HHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHH-HHcCCCCCccH
Confidence 999999999998876 56677788888887 89999999999999887532 222222221 333 7899
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHCC
Q 039342 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWC----LGLRERAARVLDEATKRG 194 (248)
Q Consensus 146 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 194 (248)
+.|...++...+.+. ...+..+-..|.. .+++++|.+.|++..+.|
T Consensus 203 ~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999999888753 5677788888888 999999999999987764
No 52
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.27 E-value=6.1e-11 Score=94.93 Aligned_cols=160 Identities=15% Similarity=0.112 Sum_probs=74.8
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|++.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp ------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5566666655544442 2445666667777777777766666653 366667777777777777777777777
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
+.+ ..|..+..++.+.|++++|.+.+.+. .+..+|..++.+ |...|+|+.|...... +.
T Consensus 146 ~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~a-Cv~~~ef~lA~~~~l~-----L~ 204 (449)
T 1b89_A 146 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA-CVDGKEFRLAQMCGLH-----IV 204 (449)
T ss_dssp HHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH-HHHTTCHHHHHHTTTT-----TT
T ss_pred HHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHH-HHHcCcHHHHHHHHHH-----HH
Confidence 754 37777777777788888877777776 245666666666 6667777777544332 22
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 162 LGMRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 162 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
..+.-...++..|.+.|++++|..+++...
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 233334567788888888998888888755
No 53
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=3.7e-09 Score=88.06 Aligned_cols=221 Identities=11% Similarity=0.032 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 039342 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQ-------GGRFE-------EAIKAYVEMEKVRCDPNERTLEAVLSVYCF 70 (248)
Q Consensus 5 ~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 70 (248)
++|..+|++..... +-+...|..+...+.+ .|+++ +|.++|++..+.-.+-+...|..+...+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36667788776542 2467888888888876 79987 899999998753234468889999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCcC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHH
Q 039342 71 AGLVDESKEQFQEIKSSGILPS--VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMV 148 (248)
Q Consensus 71 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 148 (248)
.|++++|.++|++..+. .|+ ...|......+.+.|++++|..+|++..+..-. +...+.......+...|+++.|
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHH
Confidence 99999999999999885 454 258999999999999999999999999875321 1222222111113357888999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCC-CCCCcchhhhHHhhhhhhccccchHHHHHHHHH
Q 039342 149 EYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRG-LFPELFRHNKLVWSVDVHRMWEGGAYTAISVWL 227 (248)
Q Consensus 149 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~ 227 (248)
..+|+...+... -+...+..++..+.+.|+.++|..+|++....+ ..|+. ...+|...+.-..+.|+.+.+..+.
T Consensus 411 ~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~---~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 411 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK---SGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG---CHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH---HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999998877532 257889999999999999999999999988763 23321 2223333334556678899988888
Q ss_pred HHHHHH
Q 039342 228 NKMYEM 233 (248)
Q Consensus 228 ~~m~~~ 233 (248)
+++.+.
T Consensus 487 ~r~~~~ 492 (530)
T 2ooe_A 487 KRRFTA 492 (530)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.23 E-value=9.3e-11 Score=94.23 Aligned_cols=233 Identities=10% Similarity=-0.037 Sum_probs=163.7
Q ss_pred CCchHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhc
Q 039342 1 GGLYKECQAILSRMSESGVARNS----DSFNAVIEAFRQGGRFEEAIKAYVEMEKV----R-CDPNERTLEAVLSVYCFA 71 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~----~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~t~~~ll~~~~~~ 71 (248)
.|++++|.+.|++..+.+.. +. ..|..+-..|...|++++|.+.+++..+. + -+.....+..+-..|...
T Consensus 61 ~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 38999999999998875432 22 57888999999999999999999987543 1 123446778888899999
Q ss_pred CChhHHHHHHHHHHHC----CCCc-CHhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC----CCC
Q 039342 72 GLVDESKEQFQEIKSS----GILP-SVMCYCMLLAVYAKSNR-----------------WDDAYGLLDEMHTN----RIS 125 (248)
Q Consensus 72 g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~----~~~ 125 (248)
|++++|...+++..+. +-.| ...++..+-..|...|+ +++|+..+++..+. +-.
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999887643 2122 34578888899999999 99999998876432 222
Q ss_pred chHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcc
Q 039342 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG-LG----MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200 (248)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 200 (248)
+........+...+...|+++.|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+..-.....
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 333333333334467788899999998877653111 11 3377888899999999999999999876421111111
Q ss_pred hhhhHHhhhhhhccccchHHHHHHHHHHHHHHHH
Q 039342 201 RHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234 (248)
Q Consensus 201 t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~ 234 (248)
.....++..+...+...|++++|...+++..+..
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1122233333467788899999999888876653
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.23 E-value=1.5e-09 Score=77.39 Aligned_cols=167 Identities=10% Similarity=-0.021 Sum_probs=131.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHh
Q 039342 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135 (248)
Q Consensus 56 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 135 (248)
-++..|..+-..|.+.|++++|.+.|++..+.. +-+..++..+...|.+.|++++|...+.+..... |+.......+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 367789999999999999999999999988753 2267889999999999999999999999987765 3333333333
Q ss_pred cccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC-cchhhhHHhhhhhhcc
Q 039342 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE-LFRHNKLVWSVDVHRM 214 (248)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~ 214 (248)
...+...++++.+...+......... +...+..+-..+.+.|++++|.+.|++..+. .|+ ...|..+- ..|
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg-----~~~ 151 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIG-----LAY 151 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH-----HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHH-----HHH
Confidence 33366678889999999888776433 5778889999999999999999999998764 443 23344333 678
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 039342 215 WEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 215 ~~~g~~~~~~~~~~~m~~~ 233 (248)
.+.|++++|...+++-.+.
T Consensus 152 ~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 152 EGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHhC
Confidence 8999999999999887653
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.20 E-value=4.6e-10 Score=87.05 Aligned_cols=233 Identities=12% Similarity=-0.034 Sum_probs=161.9
Q ss_pred CCchHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhc
Q 039342 1 GGLYKECQAILSRMSESGVARN----SDSFNAVIEAFRQGGRFEEAIKAYVEMEKV----RCD-PNERTLEAVLSVYCFA 71 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~----~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~t~~~ll~~~~~~ 71 (248)
.|++++|...|++..+.... + ...|..+...+...|++++|.+.+++..+. +-. ....++..+...|...
T Consensus 18 ~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 38999999999998875422 2 467888999999999999999999886432 212 2256778888899999
Q ss_pred CChhHHHHHHHHHHHC----CCCc-CHhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHC----
Q 039342 72 GLVDESKEQFQEIKSS----GILP-SVMCYCMLLAVYAKSNR--------------------WDDAYGLLDEMHTN---- 122 (248)
Q Consensus 72 g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~~---- 122 (248)
|++++|...+++..+. +-.+ ...++..+...+...|+ +++|...+++..+.
T Consensus 97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~ 176 (338)
T 3ro2_A 97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL 176 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999887542 1111 14478888889999999 99999998876432
Q ss_pred CCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCC
Q 039342 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE----GYG-LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197 (248)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 197 (248)
+..+........+...+...|+++.|...++...+. +.. ....++..+...+...|++++|.+.+++..+..-..
T Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (338)
T 3ro2_A 177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 256 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Confidence 222333333333334466778899999988876543 111 123477888889999999999999999876421111
Q ss_pred CcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHH
Q 039342 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234 (248)
Q Consensus 198 ~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~ 234 (248)
+........+..+...+...|++++|...+++..+..
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 257 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 1111122233333366788899999999888876653
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.17 E-value=7.2e-10 Score=91.19 Aligned_cols=182 Identities=12% Similarity=-0.010 Sum_probs=150.4
Q ss_pred Cch-HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---------
Q 039342 2 GLY-KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA--------- 71 (248)
Q Consensus 2 g~~-~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--------- 71 (248)
|++ ++|++.|++..+... -+...|..+-..|.+.|++++|.+.|++..+. .|+...+..+-..|...
T Consensus 116 g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~ 192 (474)
T 4abn_A 116 PDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHS 192 (474)
T ss_dssp SSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHH
T ss_pred cccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhh
Confidence 788 999999999887542 35889999999999999999999999999876 47788999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCc---hHHhHHHHhccccc
Q 039342 72 GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS--------NRWDDAYGLLDEMHTNRISN---IHQVTGQMIKGEFD 140 (248)
Q Consensus 72 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~---~~~~~~~~l~~~~~ 140 (248)
|++++|.+.|++..+.. +-+...|..+-.+|... |++++|+..|++..+.. | +.......+...+.
T Consensus 193 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~ 269 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD--RKASSNPDLHLNRATLHK 269 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHH
Confidence 99999999999998753 22678899999999998 99999999999998764 5 44444444444477
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 039342 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190 (248)
Q Consensus 141 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 190 (248)
..|+++.|...|++..+.... +...+..+-..+...|++++|.+.+.++
T Consensus 270 ~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 270 YEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 889999999999998876533 5667888889999999999998766543
No 58
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=7.7e-10 Score=83.81 Aligned_cols=159 Identities=12% Similarity=0.006 Sum_probs=119.2
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCc-CHhhHHHH
Q 039342 34 RQGGRFEEAIKAYVEMEKV-------RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS------GILP-SVMCYCML 99 (248)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~l 99 (248)
...|++++|...+++..+. .-+....++..+-..|...|++++|...+++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766442 22334678889999999999999999999998754 2223 45789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------CCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc------CCCC-CHHH
Q 039342 100 LAVYAKSNRWDDAYGLLDEMHTN------RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE------GYGL-GMRF 166 (248)
Q Consensus 100 i~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~ 166 (248)
-..|...|++++|...+++..+. .-.|........+...+...|+++.|...+++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988654 222444444444444477889999999999888765 2233 3567
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 167 YNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 167 ~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
+..+...+...|++++|.+.+++..+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998764
No 59
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=3e-09 Score=75.25 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=124.2
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.+.|+++.+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 22 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 99 (186)
T 3as5_A 22 GRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLL 99 (186)
T ss_dssp TCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 78999999999887643 2468889999999999999999999999997763 456788899999999999999999999
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-HhHHHHhcccccccchHHHHHHHHHHHHhc
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH-QVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
++..+.. +.+...+..+...+...|++++|...+++..+.. |+. ..+..+.. .+...|+++.|...++...+.
T Consensus 100 ~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 100 IKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAF-SYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHH-HHHHcCCHHHHHHHHHHHHHc
Confidence 9988753 3467888999999999999999999999988765 333 33333333 366788999999999887654
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.16 E-value=1.2e-09 Score=87.26 Aligned_cols=234 Identities=11% Similarity=-0.056 Sum_probs=161.7
Q ss_pred CCchHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhc
Q 039342 1 GGLYKECQAILSRMSESGVARN----SDSFNAVIEAFRQGGRFEEAIKAYVEMEKV----RCDP-NERTLEAVLSVYCFA 71 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~----~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~ 71 (248)
.|++++|...|++..+.+.. + ...|..+-..+...|++++|...+++..+. +-.| ...++..+...|...
T Consensus 22 ~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 38899999999998875422 2 367888999999999999999999886432 2222 245777888899999
Q ss_pred CChhHHHHHHHHHHHC----CCCc-CHhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH----C
Q 039342 72 GLVDESKEQFQEIKSS----GILP-SVMCYCMLLAVYAKSNR--------------------WDDAYGLLDEMHT----N 122 (248)
Q Consensus 72 g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~----~ 122 (248)
|++++|...+++..+. +-.+ ...++..+-..|...|+ +++|...+++..+ .
T Consensus 101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 180 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999887643 1111 24578888889999999 9999999887643 2
Q ss_pred CCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCC
Q 039342 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY-GLG----MRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197 (248)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 197 (248)
+..|........+...+...|+++.|...+++..+... .++ ..++..+...+...|++++|...+++..+..-..
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 32333333333334446778889999998887764311 112 3477888889999999999999999876421111
Q ss_pred CcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHH
Q 039342 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFM 235 (248)
Q Consensus 198 ~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~ 235 (248)
........++..+...+...|++++|...+++..+..-
T Consensus 261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 11111122233333667788999999998888766543
No 61
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.15 E-value=4.4e-09 Score=79.50 Aligned_cols=190 Identities=10% Similarity=-0.030 Sum_probs=138.7
Q ss_pred CchHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039342 2 GLYKECQAILSRMSESGVARN--SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~--~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 79 (248)
|++++|.+.|++..+.+..|+ ...|..+-..+...|++++|.+.|++..+.. +.+...+..+...|...|++++|.+
T Consensus 51 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 51 AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp TCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHH
Confidence 789999999999987432222 3458999999999999999999999997764 3456789999999999999999999
Q ss_pred HHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHH-hHHHHhcccccccch---HHHHHHHHHHH
Q 039342 80 QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ-VTGQMIKGEFDDESN---WQMVEYVFDKL 155 (248)
Q Consensus 80 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~---~~~a~~~~~~m 155 (248)
.|++..+.. +.+...|..+-..+...+++++|...|++..+.. |+.. .+..+... +...++ ++.|...++..
T Consensus 130 ~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 130 YMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARA-NAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHH-HHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHH-HHHcCcchhhHHHHHHHHHH
Confidence 999988762 2256667777624444569999999999998764 4332 22222221 222233 55666666665
Q ss_pred Hhc-CCCCC------HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 156 NCE-GYGLG------MRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 156 ~~~-~~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
.+. .-.|+ ..+|..+-..|...|++++|.+.|++..+. .|+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~ 253 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPT 253 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--Ccc
Confidence 543 12233 257888889999999999999999998864 465
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=2.5e-08 Score=85.82 Aligned_cols=164 Identities=14% Similarity=0.056 Sum_probs=138.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLL 100 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li 100 (248)
++..|+.+-..+.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|.+.|++..+. .| +...|..+-
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 47789999999999999999999999987753 335788999999999999999999999998875 34 578999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch
Q 039342 101 AVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR 180 (248)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 180 (248)
.+|.+.|++++|++.|++..+.. |+.......+...+...|++++|...|++..+.... +...+..+...+...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 99999999999999999988754 555444333444477889999999999998886533 577899999999999999
Q ss_pred HHHHHHHHHHH
Q 039342 181 ERAARVLDEAT 191 (248)
Q Consensus 181 ~~a~~~~~~m~ 191 (248)
++|.+.+++..
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888765
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.14 E-value=3.8e-10 Score=90.62 Aligned_cols=232 Identities=11% Similarity=-0.050 Sum_probs=160.8
Q ss_pred CchHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhc
Q 039342 2 GLYKECQAILSRMSES----GV-ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV----R-CDPNERTLEAVLSVYCFA 71 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~----g~-~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~t~~~ll~~~~~~ 71 (248)
|++++|.+.|++..+. +- +.....|..+-..|...|++++|.+.+++..+. + -+....++..+-..|...
T Consensus 100 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 100 GDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 7889999999887542 11 234568888999999999999999999987543 1 122345778888899999
Q ss_pred CC-----------------hhHHHHHHHHHHHC----CCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC
Q 039342 72 GL-----------------VDESKEQFQEIKSS----GILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR----IS 125 (248)
Q Consensus 72 g~-----------------~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~ 125 (248)
|+ +++|.+.+++..+. +-.| ...++..+-..|...|++++|...+++..+.. ..
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 99 99999998886542 2222 34578889999999999999999999875432 11
Q ss_pred chHHhHHHHhcccccccchHHHHHHHHHHHHhcCC----C-CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcc
Q 039342 126 NIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY----G-LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELF 200 (248)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 200 (248)
+........+...+...|+++.|...+++..+... . ....++..+...+...|++++|.+.+++..+..-.....
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 11111222333347778899999999987765311 1 125678888899999999999999999876421111111
Q ss_pred hhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 201 RHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 201 t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
......+..+...|...|+.++|...+++..+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 112222223336778889999999888776554
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.12 E-value=4.8e-09 Score=83.68 Aligned_cols=230 Identities=8% Similarity=-0.062 Sum_probs=161.6
Q ss_pred CCchHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC----CCCHHHHHHHHHHHH
Q 039342 1 GGLYKECQAILSRMSES----GVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV--RC----DPNERTLEAVLSVYC 69 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~----g~~~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~--~~----~p~~~t~~~ll~~~~ 69 (248)
.|++++|.+.|++..+. +-.+ ...+|..+-..|...|+++.|...+++..+. .. +....+++.+-..|.
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 38899999999998653 1122 3568889999999999999999999987543 11 112467888889999
Q ss_pred hcCChhHHHHHHHHHHHC----CCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCchHHhHHHHhccccc
Q 039342 70 FAGLVDESKEQFQEIKSS----GILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RISNIHQVTGQMIKGEFD 140 (248)
Q Consensus 70 ~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~~l~~~~~ 140 (248)
..|++++|.+.|++..+. +-.+ ...++..+-..|...|++++|+..+++..+. +..|........+...+.
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 999999999999887643 2111 2357888999999999999999999988662 332444333333334477
Q ss_pred ccchHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhc
Q 039342 141 DESNWQMVEYVFDKLNCE----GYGLGMRFYNALLEALWCLGL---RERAARVLDEATKRGLFPELFRHNKLVWSVDVHR 213 (248)
Q Consensus 141 ~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 213 (248)
..|+++.|...+++..+. +-......+..+-..+...|+ +++|..++++. +..|+.. -+...+...
T Consensus 276 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~----~~~~~la~~ 348 (383)
T 3ulq_A 276 KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLE----DFAIDVAKY 348 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHH----HHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHH----HHHHHHHHH
Confidence 788899999998876553 222223345677778888888 66777776654 3333321 122233377
Q ss_pred cccchHHHHHHHHHHHHHHHHHcC
Q 039342 214 MWEGGAYTAISVWLNKMYEMFMMG 237 (248)
Q Consensus 214 ~~~~g~~~~~~~~~~~m~~~~~~~ 237 (248)
|...|++++|...+++..+..-.-
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHh
Confidence 889999999999999887765544
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.10 E-value=7.8e-10 Score=85.76 Aligned_cols=232 Identities=11% Similarity=-0.051 Sum_probs=160.0
Q ss_pred CchHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhc
Q 039342 2 GLYKECQAILSRMSES----GVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC-DPN----ERTLEAVLSVYCFA 71 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~----g~~~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~ 71 (248)
|++++|.+.|++..+. +-.| ....+..+-..+...|++++|.+.+++..+..- .++ ..++..+...|...
T Consensus 57 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 57 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 136 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc
Confidence 7889999999876532 2222 356888899999999999999999998754311 122 34778888899999
Q ss_pred CC--------------------hhHHHHHHHHHHHC----CCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 039342 72 GL--------------------VDESKEQFQEIKSS----GILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN---- 122 (248)
Q Consensus 72 g~--------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---- 122 (248)
|+ +++|.+.+++..+. +-.| ...++..+...+...|++++|...+++..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 99 99999998876532 2122 2457888889999999999999999987543
Q ss_pred CCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCC
Q 039342 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE----GYGL-GMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197 (248)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 197 (248)
+..+........+...+...|+++.|...+++..+. +..+ ...++..+...+...|++++|...+++..+..-..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 222222222222333366778899999998876543 1111 15567888899999999999999999876421111
Q ss_pred CcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 198 ~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
........++..+...+...|++++|...+++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111112223333447788899999999999887654
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.10 E-value=3.3e-08 Score=72.89 Aligned_cols=152 Identities=11% Similarity=-0.007 Sum_probs=90.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
++..|...-..+.+.|++++|.+.|++..+..-+++...+..+-.++.+.|++++|.+.|++..+... -+...|..+-.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 45666666666777777777777777766654335666666666777777777777777777665421 14456666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCchHHh-------HHHHhcccccccchHHHHHHHHHHHHhcCCCCC---HHHHHHHH
Q 039342 102 VYAKSNRWDDAYGLLDEMHTNRISNIHQV-------TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG---MRFYNALL 171 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li 171 (248)
.|...|++++|+..+++..+.. |+... ....+...+...|+++.|...++...+. .|+ ...+..+-
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 7777777777777777766543 33221 1111222244556667777777666554 333 34455555
Q ss_pred HHHHhcC
Q 039342 172 EALWCLG 178 (248)
Q Consensus 172 ~~~~~~g 178 (248)
..+...|
T Consensus 161 ~~~~~~~ 167 (228)
T 4i17_A 161 VLFYNNG 167 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 67
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=1.8e-08 Score=67.13 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYA 104 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 104 (248)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45556666666677777777776665543 2345566666666666777777777776665542 224556666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc
Q 039342 105 KSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE 158 (248)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 158 (248)
..|++++|...++++.+.... +...+..+... +...|+++.|...++.+.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~-~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNA-YYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH-HHHHccHHHHHHHHHHHHcc
Confidence 777777777777666554311 12223233222 45566666777666666543
No 68
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.07 E-value=1.4e-08 Score=81.09 Aligned_cols=196 Identities=13% Similarity=0.050 Sum_probs=150.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL-VDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
...|+.+-..+.+.|++++|++.+++..+.. +-+...|+.+-.++.+.|+ +++|...|++..+... -+...|..+-.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 4678888889999999999999999998764 3467888999999999997 9999999999987632 26788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCch
Q 039342 102 VYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWC-LGLR 180 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~ 180 (248)
.+...|++++|+..|++..+.. |+.......+...+...|+++.|...++...+.... +...|+.+-.++.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999998765 554443333333466778899999999999987655 67889999999999 6665
Q ss_pred HHH-----HHHHHHHHHCCCCCCc-chhhhHHhhhhhhccccch--HHHHHHHHHHHH
Q 039342 181 ERA-----ARVLDEATKRGLFPEL-FRHNKLVWSVDVHRMWEGG--AYTAISVWLNKM 230 (248)
Q Consensus 181 ~~a-----~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~g--~~~~~~~~~~~m 230 (248)
++| .+.+++..+. .|+. ..|..+- ..+...| +++++...+.++
T Consensus 252 ~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~-----~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL--VPHNESAWNYLK-----GILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTCHHHHHHHH-----HHHTTTCGGGCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--CCCCHHHHHHHH-----HHHHccCccchHHHHHHHHHh
Confidence 777 4778877653 5542 2333333 3344445 577777766655
No 69
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.07 E-value=4.7e-08 Score=81.43 Aligned_cols=182 Identities=10% Similarity=0.045 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHH
Q 039342 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN--ERTLEAVLSVYCFAGLVDESKEQFQE 83 (248)
Q Consensus 6 ~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~ 83 (248)
+|.++|++..+.-.+.+...|..+...+.+.|++++|.++|++..+. .|+ ...|......+.+.|++++|.++|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 89999999875222346889999999999999999999999999874 554 35899999999999999999999999
Q ss_pred HHHCCCCcCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCchH-HhHHHHhcccccccchHHHHHHHHHHHHhcCC-
Q 039342 84 IKSSGILPSVMCYCMLLAV-YAKSNRWDDAYGLLDEMHTNRISNIH-QVTGQMIKGEFDDESNWQMVEYVFDKLNCEGY- 160 (248)
Q Consensus 84 m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~- 160 (248)
..+.. +.+...|...... +...|+.++|..+|++..+.. |+. ..+..++.. ....|+.+.|..+|+.....+.
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~-~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDY-LSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHH-HTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHH-HHhCCCHhhHHHHHHHHHhccCC
Confidence 98752 1122333322222 336899999999999987653 543 344444433 6677899999999999988743
Q ss_pred CCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 161 GLG--MRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 161 ~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
.|+ ...|...+......|+.+.+..++.++.+.
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333 457888888888999999999999988753
No 70
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.06 E-value=2.6e-09 Score=85.31 Aligned_cols=233 Identities=11% Similarity=-0.057 Sum_probs=160.9
Q ss_pred CchHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhc
Q 039342 2 GLYKECQAILSRMSES----GVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC-DPN----ERTLEAVLSVYCFA 71 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~----g~~~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~ 71 (248)
|++++|...|++..+. +-.| ...+|..+-..+...|++++|...+++..+..- .++ ..++..+-..|...
T Consensus 61 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 61 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 7889999999876432 2222 356788889999999999999999988754310 122 45788888899999
Q ss_pred CC--------------------hhHHHHHHHHHHHC----CCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 039342 72 GL--------------------VDESKEQFQEIKSS----GILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN---- 122 (248)
Q Consensus 72 g~--------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---- 122 (248)
|+ +++|.+.+++..+. +-.| ...++..+-..|...|++++|...+++..+.
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 99 99999998876532 2222 2457888899999999999999999987543
Q ss_pred CCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCC
Q 039342 123 RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE----GYGL-GMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197 (248)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 197 (248)
+..+........+...+...|+++.|...++...+. +..+ ...++..+...+...|++++|.+.+++..+..-..
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 222222223333333467788999999998876643 2111 15677888999999999999999999876421111
Q ss_pred CcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHH
Q 039342 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMF 234 (248)
Q Consensus 198 ~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~ 234 (248)
+........+..+...+...|++++|...+++..+..
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1111112222333367788999999999888876653
No 71
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.04 E-value=4.6e-07 Score=74.70 Aligned_cols=111 Identities=10% Similarity=0.055 Sum_probs=46.2
Q ss_pred chHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCh
Q 039342 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQ----GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF----AGLV 74 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~ 74 (248)
+.++|.+.|++..+.| ++..+..|-..|.. .+++++|.+.|++..+.| +...+..+-..|.. .++.
T Consensus 94 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 94 DYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 3444444444444322 23333333333433 344444444444443332 22333333333333 3444
Q ss_pred hHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 039342 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAK----SNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 75 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~ 122 (248)
++|.+.|++..+.| +...+..+-..|.. .++.++|...|++..+.
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 44444444444332 33344444444443 44444555554444443
No 72
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=2.3e-08 Score=66.61 Aligned_cols=129 Identities=14% Similarity=0.076 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccc
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF 139 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~ 139 (248)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+.. .+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~-~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGN-AY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHH-HH
Confidence 34555566666666666666666665432 124455666666666666666666666666554311 1222222222 24
Q ss_pred cccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 140 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
...|+++.|...++.+.+... .+...+..+...+...|++++|.+.++++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 455666666666666655432 2345555666666666666666666666544
No 73
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.04 E-value=5.5e-07 Score=74.22 Aligned_cols=181 Identities=13% Similarity=0.043 Sum_probs=108.8
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCC
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQ----GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF----AGL 73 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~ 73 (248)
+++++|.+.|++..+.| ++..+..+-..|.. .++.++|.+.|++..+.| +...+..+-..|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 46777777777776654 45566666666665 667777777777776654 45666666666666 677
Q ss_pred hhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHH
Q 039342 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAK----SNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVE 149 (248)
Q Consensus 74 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (248)
.++|.+.|++..+.| +...+..+-..|.. .++.++|...|++..+.+.......+..+........++++.|.
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 777777777776654 44555666666654 56777777777776665432111111111111122245666777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CchHHHHHHHHHHHHCC
Q 039342 150 YVFDKLNCEGYGLGMRFYNALLEALWCL-----GLRERAARVLDEATKRG 194 (248)
Q Consensus 150 ~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g 194 (248)
..|+...+.| +...+..+-..|... ++.++|...|++..+.|
T Consensus 280 ~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 280 EWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 7666665543 334455555555555 66666666666666543
No 74
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=5.9e-08 Score=74.46 Aligned_cols=146 Identities=12% Similarity=0.030 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 42 AIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGIL-PSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120 (248)
Q Consensus 42 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 120 (248)
+...|++..+.+ .++..++..+..++...|++++|.+++.+....+-. -+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566677666554 456666667777788888888888888777655431 256677788888888888888888888887
Q ss_pred HCCCCc-----hHHhHHHHhccc---ccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 121 TNRISN-----IHQVTGQMIKGE---FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 121 ~~~~~~-----~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
+.. | +..+...+..++ ....+.++.|..+|+++.+.. |+..+-..++.++...|++++|.+.++.+.+
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 653 4 345554444431 222346778888888876543 4433334444477788888888888876543
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.96 E-value=1.7e-07 Score=69.03 Aligned_cols=138 Identities=12% Similarity=-0.065 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHh
Q 039342 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135 (248)
Q Consensus 56 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 135 (248)
.|+..+...-..+.+.|++++|.+.|++..+....++...+..+-.++...|++++|+..|++..+.. |+.......+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence 46678888889999999999999999999876543677777779999999999999999999998765 5554444444
Q ss_pred cccccccchHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGM-------RFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
...+...|+++.|...++...+.... +. ..|..+-..+...|++++|.+.|++..+. .|+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 149 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSK 149 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCC
Confidence 44477889999999999998876432 33 45777888889999999999999998764 554
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.96 E-value=2e-07 Score=73.91 Aligned_cols=232 Identities=11% Similarity=-0.027 Sum_probs=151.1
Q ss_pred CCchHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhc
Q 039342 1 GGLYKECQAILSRMSESGVARNS----DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC-DPNE----RTLEAVLSVYCFA 71 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~----~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~t~~~ll~~~~~~ 71 (248)
.|++++|...+++........+. ..++.+-..+...|++++|.+.+++..+..- .++. .++..+-..+...
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 37899999999987664322222 2566667788889999999999988754210 1222 3356677788999
Q ss_pred CChhHHHHHHHHHHHC----CCC--c-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--c-hH-HhHHHHhccccc
Q 039342 72 GLVDESKEQFQEIKSS----GIL--P-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS--N-IH-QVTGQMIKGEFD 140 (248)
Q Consensus 72 g~~~~a~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~-~~-~~~~~~l~~~~~ 140 (248)
|++++|...+++..+. +.. | ....+..+-..+...|++++|...+++..+.... + .. ..+.. +...+.
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-la~~~~ 185 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM-LIQCSL 185 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH-HHHHHH
Confidence 9999999999887642 222 3 2456677888899999999999999987654321 1 11 22222 223366
Q ss_pred ccchHHHHHHHHHHHHhcCCCCC--HHHHH----HHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhcc
Q 039342 141 DESNWQMVEYVFDKLNCEGYGLG--MRFYN----ALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214 (248)
Q Consensus 141 ~~~~~~~a~~~~~~m~~~~~~p~--~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 214 (248)
..|+++.|...+++.......++ ..... .....+...|++++|...+++..... |....+....+..+...+
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE--FANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC--CTTCGGGHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC--CCcchhhHHHHHHHHHHH
Confidence 77889999999988765421111 11111 23344778999999999998876532 211111111122233566
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 039342 215 WEGGAYTAISVWLNKMYEMFM 235 (248)
Q Consensus 215 ~~~g~~~~~~~~~~~m~~~~~ 235 (248)
...|+.++|...+++..+..-
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHH
Confidence 778999999998888766543
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.95 E-value=6.9e-08 Score=76.87 Aligned_cols=225 Identities=7% Similarity=-0.057 Sum_probs=155.3
Q ss_pred CchHHHHHHHHHHHHcCC-CC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---CC-CHHHHHHHHHHHHh
Q 039342 2 GLYKECQAILSRMSESGV-AR----NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV--RC---DP-NERTLEAVLSVYCF 70 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~-~~----~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~--~~---~p-~~~t~~~ll~~~~~ 70 (248)
|++++|.+.|++..+.-. .+ ...+|..+-..|...|+++.|...+++..+. .. .+ ...+++.+-..|..
T Consensus 115 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~ 194 (378)
T 3q15_A 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194 (378)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 789999999998865311 12 3567888889999999999999999887542 11 11 24677888899999
Q ss_pred cCChhHHHHHHHHHHHC----CCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCchHHhHHHHhccccccc
Q 039342 71 AGLVDESKEQFQEIKSS----GILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR---ISNIHQVTGQMIKGEFDDE 142 (248)
Q Consensus 71 ~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~~l~~~~~~~ 142 (248)
.|++++|.+.|++..+. +-.+ ...++..+-..|...|++++|+..+++..+.. ..|........+...+...
T Consensus 195 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 274 (378)
T 3q15_A 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHC
Confidence 99999999999887642 2222 24578888899999999999999999886610 1233332233333347778
Q ss_pred chHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccc
Q 039342 143 SNWQMVEYVFDKLNCEG----YGLGMRFYNALLEALWCLGL---RERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMW 215 (248)
Q Consensus 143 ~~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 215 (248)
|+++.|...++...+.. -......+..+-..+...++ +++|..++++ .+..|+... +...+...|.
T Consensus 275 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~----~~~~la~~y~ 347 (378)
T 3q15_A 275 GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEA----CARSAAAVFE 347 (378)
T ss_dssp TCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHH----HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHH----HHHHHHHHHH
Confidence 89999999998877642 22223455666666777777 6667766665 333333221 1122336788
Q ss_pred cchHHHHHHHHHHHHHHH
Q 039342 216 EGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 216 ~~g~~~~~~~~~~~m~~~ 233 (248)
..|++++|...+++..+.
T Consensus 348 ~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 899999999998877654
No 78
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.95 E-value=5.2e-08 Score=74.75 Aligned_cols=182 Identities=11% Similarity=0.063 Sum_probs=134.3
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039342 7 CQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC-DPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 7 a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 85 (248)
|+..|++..+.+ .++..++..+-.++...|++++|++++.+-...|- .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345566555444 45666667888899999999999999998766553 2356777888999999999999999999998
Q ss_pred HCCCCc-----CHhhHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHH
Q 039342 86 SSGILP-----SVMCYCMLLAVYA--KSN--RWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN 156 (248)
Q Consensus 86 ~~~~~p-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 156 (248)
+. .| +..+...+..++. ..| +..+|..+|+++.+.. |+......++. ++...|++++|+..++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLN-LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHH-HHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 75 45 3566666666633 334 8999999999987654 43222222222 4778899999999999776
Q ss_pred hcC---------CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 157 CEG---------YGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 157 ~~~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
+.- -+-+..+...+|......|+ .|.+++.++++. .|+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~ 285 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHE 285 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCC
Confidence 531 13366777788999999997 999999999885 676
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.94 E-value=2.8e-08 Score=85.55 Aligned_cols=165 Identities=12% Similarity=0.033 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHh
Q 039342 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135 (248)
Q Consensus 57 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 135 (248)
+...|+.+-..|.+.|++++|.+.|++..+. .| +...|..+-.+|.+.|++++|+..|++..+.. |+.......+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 3578999999999999999999999998875 34 57889999999999999999999999988764 5554444444
Q ss_pred cccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCc-chhhhHHhhhhhhcc
Q 039342 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPEL-FRHNKLVWSVDVHRM 214 (248)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~ 214 (248)
...+...|++++|.+.|++..+.... +...|+.+-.+|...|++++|.+.|++..+. .|+. ..+..+. ..+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~-----~~l 155 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLA-----HCL 155 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHH-----HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhh-----hHH
Confidence 44477889999999999998876533 5788999999999999999999999998764 5652 3344444 566
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 039342 215 WEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 215 ~~~g~~~~~~~~~~~m~~~ 233 (248)
...|++++|.+.+++..+.
T Consensus 156 ~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHTTCCTTHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHh
Confidence 6777777777766665543
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.92 E-value=9.8e-08 Score=75.65 Aligned_cols=229 Identities=14% Similarity=0.073 Sum_probs=153.3
Q ss_pred CchHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSESGV-ARN----SDSFNAVIEAFRQGGRFEEAIKAYVEMEKV----RCD--P-NERTLEAVLSVYC 69 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~-~~~----~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--p-~~~t~~~ll~~~~ 69 (248)
|++++|.+.+++..+... .++ ..+++.+-..+...|++++|.+.+++..+. +-. | ....+..+-..+.
T Consensus 67 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (373)
T 1hz4_A 67 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 146 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence 788999999988754211 112 234667778889999999999999887543 222 3 2355667788899
Q ss_pred hcCChhHHHHHHHHHHHCCC--Cc--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHhHHH----Hhccccc
Q 039342 70 FAGLVDESKEQFQEIKSSGI--LP--SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI-HQVTGQ----MIKGEFD 140 (248)
Q Consensus 70 ~~g~~~~a~~~~~~m~~~~~--~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~----~l~~~~~ 140 (248)
..|++++|...+++..+..- .+ ...++..+-..+...|++++|...+++.......+. ...+.. .....+.
T Consensus 147 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 147 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 99999999999998765321 11 235678888889999999999999998865321111 111111 1111244
Q ss_pred ccchHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCchHHHHHHHHHHHH----CCCCCCcchhhhHHhhhhhhc
Q 039342 141 DESNWQMVEYVFDKLNCEGYGL---GMRFYNALLEALWCLGLRERAARVLDEATK----RGLFPELFRHNKLVWSVDVHR 213 (248)
Q Consensus 141 ~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~t~~~li~~~~~~~ 213 (248)
..|+++.+...++........+ ....+..+...+...|++++|...+++... .|..++. .-+...+...
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~----~~~~~~la~~ 302 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL----NRNLLLLNQL 302 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH----HHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH----HHHHHHHHHH
Confidence 6788999999988876543221 133567778899999999999999998754 2221111 1122223356
Q ss_pred cccchHHHHHHHHHHHHHHHH
Q 039342 214 MWEGGAYTAISVWLNKMYEMF 234 (248)
Q Consensus 214 ~~~~g~~~~~~~~~~~m~~~~ 234 (248)
+...|+.++|...+++-.+..
T Consensus 303 ~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 303 YWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHh
Confidence 778889999988887766543
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.90 E-value=1.4e-07 Score=70.99 Aligned_cols=170 Identities=8% Similarity=0.009 Sum_probs=122.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-Cc-CHhh
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN---ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGI-LP-SVMC 95 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~ 95 (248)
.+...+-..-..+.+.|++++|...|++..+.. +-+ ...+..+-.+|.+.|++++|...|++..+... .| ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456777778888899999999999999997753 122 57788888999999999999999999987521 12 2456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCchHHhHH-----------------HHhcccccccchHHHHHH
Q 039342 96 YCMLLAVYAK--------SNRWDDAYGLLDEMHTNRISNIHQVTG-----------------QMIKGEFDDESNWQMVEY 150 (248)
Q Consensus 96 ~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~ 150 (248)
+..+-.++.. .|++++|+..|++..+.. |+..... ..+...+...|+++.|..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 6777778888 899999999999987654 3322111 122233556778888888
Q ss_pred HHHHHHhcCCCC--CHHHHHHHHHHHHhc----------CchHHHHHHHHHHHHC
Q 039342 151 VFDKLNCEGYGL--GMRFYNALLEALWCL----------GLRERAARVLDEATKR 193 (248)
Q Consensus 151 ~~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 193 (248)
.|+...+..... ....+..+..+|... |++++|...|++..+.
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 888877653221 244566666777655 7778888888887764
No 82
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.87 E-value=1.1e-07 Score=75.71 Aligned_cols=188 Identities=11% Similarity=-0.003 Sum_probs=134.6
Q ss_pred CchHHHHHHHHHHHHc----C--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHh
Q 039342 2 GLYKECQAILSRMSES----G--VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC-DPN----ERTLEAVLSVYCF 70 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~----g--~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~ 70 (248)
|++++|.+.+.+..+. + ......+++.+-..|...|++++|.+.+++..+..- .++ ..++..+-..|..
T Consensus 157 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 236 (383)
T 3ulq_A 157 KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS 236 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 7888888888876542 1 111246788889999999999999999988754311 122 2478889999999
Q ss_pred cCChhHHHHHHHHHHHC----CC-CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CchHHhHHHHhccccccc
Q 039342 71 AGLVDESKEQFQEIKSS----GI-LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI---SNIHQVTGQMIKGEFDDE 142 (248)
Q Consensus 71 ~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~~l~~~~~~~ 142 (248)
.|++++|.+.+++..+. +. +....++..+-..|.+.|++++|...+++..+... .|........+...+...
T Consensus 237 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~ 316 (383)
T 3ulq_A 237 QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSG 316 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 99999999999988762 33 33467899999999999999999999998754321 122222223344446666
Q ss_pred ch---HHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 143 SN---WQMVEYVFDKLNCEGYGLG-MRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 143 ~~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
++ ++.+..+++. .+..|+ ...+..+-..|...|++++|.+.+++..+
T Consensus 317 ~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 317 PDEEAIQGFFDFLES---KMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH---CcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66 5555555554 344443 34677788999999999999999998764
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.84 E-value=4e-07 Score=69.86 Aligned_cols=167 Identities=9% Similarity=0.038 Sum_probs=122.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCc-CHh
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKV----RCDPN-ERTLEAVLSVYCFAGLVDESKEQFQEIKSS----GILP-SVM 94 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~ 94 (248)
.|+.....|...|++++|.+.|.+..+. |-+++ ..+|+.+-.+|.+.|++++|...+++..+. |-.+ -..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677777888999999999999887443 32222 568899999999999999999999887643 2111 145
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHHHHHHCC----CCch-HHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCH----
Q 039342 95 CYCMLLAVYAKS-NRWDDAYGLLDEMHTNR----ISNI-HQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGM---- 164 (248)
Q Consensus 95 ~~~~li~~~~~~-~~~~~a~~~~~~m~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---- 164 (248)
+++.+-..|... |++++|+..|++..+.. ..+. ..++..+-. .+...|+++.|...++...+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD-LKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 788889999996 99999999999876432 1111 123333333 367788999999999998876433221
Q ss_pred --HHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 165 --RFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 165 --~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
..|..+..++...|++++|...|++..+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2567788889999999999999998764
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=7.2e-07 Score=65.68 Aligned_cols=100 Identities=10% Similarity=0.100 Sum_probs=66.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH----hh
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-P-NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV----MC 95 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~ 95 (248)
+...+..+...+.+.|++++|...|+++.+..-. | ....+..+..+|.+.|++++|...|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 3455566667788889999999999988765311 1 13567777888888999999999998887642 322 13
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHHCC
Q 039342 96 YCMLLAVYAK------------------SNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 96 ~~~li~~~~~------------------~~~~~~a~~~~~~m~~~~ 123 (248)
+-.+-.++.. .|+.++|...|++..+..
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 3333333332 467778888888776543
No 85
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.83 E-value=4.7e-07 Score=81.56 Aligned_cols=158 Identities=17% Similarity=0.215 Sum_probs=114.5
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.++.++. -+..+|..+-.++.+.|++++|.+.|.+. -|...|..++.+|.+.|++++|.+.+
T Consensus 1090 ~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1090 GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred hhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555554433 24677888888888888888888888552 56677888888888888888888888
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
...++.. +++...+.+..+|++.+++++...+.+ .++...+.. +..++...|++++|..+|...
T Consensus 1158 ~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~-iGd~le~eg~YeeA~~~Y~kA------ 1221 (1630)
T 1xi4_A 1158 QMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQ-VGDRCYDEKMYDAAKLLYNNV------ 1221 (1630)
T ss_pred HHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHH-HHHHHHhcCCHHHHHHHHHhh------
Confidence 8766543 444444558888888888876444431 234444554 334477788999999999874
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 039342 162 LGMRFYNALLEALWCLGLRERAARVLDEA 190 (248)
Q Consensus 162 p~~~~~~~li~~~~~~g~~~~a~~~~~~m 190 (248)
..|..+...+++.|+++.|.+.+++.
T Consensus 1222 ---~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1222 ---SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred ---hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 47999999999999999999998865
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.83 E-value=3.5e-07 Score=72.80 Aligned_cols=188 Identities=10% Similarity=0.009 Sum_probs=133.9
Q ss_pred CchHHHHHHHHHHHHc----C-CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHh
Q 039342 2 GLYKECQAILSRMSES----G-VAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV----RCD-PNERTLEAVLSVYCF 70 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~----g-~~~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~t~~~ll~~~~~ 70 (248)
|+++.|...+.+..+. + ..+ ...+++.+-..|...|++++|.+.+++..+. +-. ....++..+-.+|..
T Consensus 155 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 234 (378)
T 3q15_A 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR 234 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 7788888888876542 1 111 3568888999999999999999999887542 111 123567788889999
Q ss_pred cCChhHHHHHHHHHHHC----CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---chHHhHHHHhcccccccc
Q 039342 71 AGLVDESKEQFQEIKSS----GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS---NIHQVTGQMIKGEFDDES 143 (248)
Q Consensus 71 ~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~~l~~~~~~~~ 143 (248)
.|++++|.+.|++..+. +-+....++..+-..|.+.|++++|...+++..+.... |........+...+...+
T Consensus 235 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 235 SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999998761 22224678889999999999999999999998764321 222222234444456666
Q ss_pred h---HHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 144 N---WQMVEYVFDKLNCEGYGLG-MRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 144 ~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
+ ++.+...++. .+..|+ ...+..+-..|...|++++|.+.|++..+
T Consensus 315 ~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 315 DERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6 5555555554 443333 34566788899999999999999998653
No 87
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=8.1e-07 Score=68.66 Aligned_cols=188 Identities=10% Similarity=0.028 Sum_probs=134.1
Q ss_pred CchHHHHHHHHHHHHc------CCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSES------GVARNS----DSFNAVIEAFRQGGRFEEAIKAYVEMEKV----RCDP-NERTLEAVLS 66 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~------g~~~~~----~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~t~~~ll~ 66 (248)
|++++|.+++++..+. +..++. ..|+.....|...|++++|.+.|.+..+. +-.+ -..+|+.+..
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 84 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM 84 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788999999877642 112442 36888888899999999999999887443 2111 1457888899
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCch-HHhHHHHhc
Q 039342 67 VYCFAGLVDESKEQFQEIKSS----GILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RISNI-HQVTGQMIK 136 (248)
Q Consensus 67 ~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~~l~ 136 (248)
.|.+.|++++|...|++..+. |-.+ ...+++.+-..|.. |++++|+..|++..+. +..+. ..++..+-
T Consensus 85 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg- 162 (307)
T 2ifu_A 85 MLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS- 162 (307)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH-
Confidence 999999999999999887542 2111 24678888888988 9999999999987543 21111 22333333
Q ss_pred ccccccchHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 137 GEFDDESNWQMVEYVFDKLNCE----GYGLG-MRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
..+...|+++.|...+++..+. +..+. ...+..+...+...|++++|...|++..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3367789999999999887653 22222 2356677778888899999999999987
No 88
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=1.5e-06 Score=63.35 Aligned_cols=179 Identities=10% Similarity=-0.005 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChhHHHHH
Q 039342 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG----LVDESKEQ 80 (248)
Q Consensus 5 ~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g----~~~~a~~~ 80 (248)
.+|.+.|.+..+.| ++..+..+-..|...+++++|.+.|++..+.| +...+..+-..|.. + ++++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888887753 67788888888888999999999999998765 45677777777777 6 89999999
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCc-hHHhHHHHhcc---cccccchHHHHHHHH
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAK----SNRWDDAYGLLDEMHTNRISN-IHQVTGQMIKG---EFDDESNWQMVEYVF 152 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~l~~---~~~~~~~~~~a~~~~ 152 (248)
|++..+.| +...+..|-..|.. .+++++|+..|++..+.+... ....+..+-.. .....++++.|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99988765 56677777777776 789999999999988777421 12222222111 122367889999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhc-C-----chHHHHHHHHHHHHCCC
Q 039342 153 DKLNCEGYGLGMRFYNALLEALWCL-G-----LRERAARVLDEATKRGL 195 (248)
Q Consensus 153 ~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~ 195 (248)
+...+.+ ++...+..+-..|... | +.++|...|+...+.|.
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9887762 2334566666666653 3 88999999988777663
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.78 E-value=2.7e-07 Score=70.86 Aligned_cols=188 Identities=7% Similarity=0.033 Sum_probs=129.5
Q ss_pred CchHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc
Q 039342 2 GLYKECQAILSRMSES----GVARN-SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCD-PN----ERTLEAVLSVYCFA 71 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~----g~~~~-~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~t~~~ll~~~~~~ 71 (248)
|++++|.+.|.+..+. |-+++ ..+|+.+-..|.+.|++++|...+++..+.... .+ ..+++.+-..|...
T Consensus 51 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~ 130 (292)
T 1qqe_A 51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130 (292)
T ss_dssp TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 7888888888876542 32222 568999999999999999999999887543111 11 45788889999996
Q ss_pred -CChhHHHHHHHHHHHC----CCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHH------hHHHHhcccc
Q 039342 72 -GLVDESKEQFQEIKSS----GILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ------VTGQMIKGEF 139 (248)
Q Consensus 72 -g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------~~~~~l~~~~ 139 (248)
|++++|...|++..+. +-.+. ..+++.+-..+.+.|++++|+..|++..+........ .+..+... +
T Consensus 131 lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~-~ 209 (292)
T 1qqe_A 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC-Q 209 (292)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH-H
T ss_pred hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH-H
Confidence 9999999999987653 11111 3578899999999999999999999998765332211 23333222 5
Q ss_pred cccchHHHHHHHHHHHHhcCCC-CC---HHHHHHHHHHHH--hcCchHHHHHHHHHH
Q 039342 140 DDESNWQMVEYVFDKLNCEGYG-LG---MRFYNALLEALW--CLGLRERAARVLDEA 190 (248)
Q Consensus 140 ~~~~~~~~a~~~~~~m~~~~~~-p~---~~~~~~li~~~~--~~g~~~~a~~~~~~m 190 (248)
...|+++.|...++...+.... ++ ...+..++.++. ..+++++|.+.|+.+
T Consensus 210 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 210 LAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 5678899999999887653211 11 123444556664 345677777777654
No 90
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.77 E-value=3.7e-07 Score=76.66 Aligned_cols=155 Identities=9% Similarity=-0.061 Sum_probs=110.2
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|.+.|++..+... -+...|..+-..+.+.|++++|.+.+++..+.. +-+...+..+-.+|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999876432 357889999999999999999999999998764 34678899999999999999999999
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHH-hHHHHhccccccc---chHHHHHHHHHHHH
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ-VTGQMIKGEFDDE---SNWQMVEYVFDKLN 156 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~---~~~~~a~~~~~~m~ 156 (248)
+++..+.. +.+...+..+-..|.+.|++++|.+.|++..+.. |+.. .+..+... +... ++++.|...+++..
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~-~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNW-RRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH-HHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH-HHHhhccccHHHHHHHHHHHH
Confidence 99988753 2257889999999999999999999999988764 4333 33333333 5556 88999999999888
Q ss_pred hcCCC
Q 039342 157 CEGYG 161 (248)
Q Consensus 157 ~~~~~ 161 (248)
+.+..
T Consensus 156 ~~~p~ 160 (568)
T 2vsy_A 156 AQGVG 160 (568)
T ss_dssp HHTCC
T ss_pred hcCCc
Confidence 76543
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.76 E-value=6.3e-07 Score=65.18 Aligned_cols=165 Identities=12% Similarity=0.008 Sum_probs=107.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHHhcCChhHHHHHHHHHHHCC
Q 039342 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN-ERTLEA----------------VLSVYCFAGLVDESKEQFQEIKSSG 88 (248)
Q Consensus 26 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~----------------ll~~~~~~g~~~~a~~~~~~m~~~~ 88 (248)
+-..-..+.+.|++++|...|++..+.. |+ ...|.. +-.+|.+.|++++|...|++..+..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3334455667888888888888876542 33 344555 7888999999999999999988753
Q ss_pred CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHh-HHHHhcccccc-cchHHHHHHHHHHHHhcCCCCCHHH
Q 039342 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV-TGQMIKGEFDD-ESNWQMVEYVFDKLNCEGYGLGMRF 166 (248)
Q Consensus 89 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~ 166 (248)
+-+...+..+-..+...|++++|+..|++..+.. |+... +..+-..++.. ....+.+...+.... ...|....
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a 159 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS--SPTKMQYA 159 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--CCCchhHH
Confidence 2267888999999999999999999999988764 44433 32222221111 123344444444432 22232233
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCc
Q 039342 167 YNALLEALWCLGLRERAARVLDEATKRGLFPEL 199 (248)
Q Consensus 167 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 199 (248)
+...-.++...|++++|...|++..+ +.|+.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~ 190 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL--RFPST 190 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--hCCCH
Confidence 33345556668899999999999875 36764
No 92
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.76 E-value=2.3e-06 Score=69.78 Aligned_cols=220 Identities=10% Similarity=-0.037 Sum_probs=140.4
Q ss_pred CchHHHHHHHHHHHHcCCCC-CHHhHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCC
Q 039342 2 GLYKECQAILSRMSESGVAR-NSDSFNAVIEA---FRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF----AGL 73 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~-~~~~y~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~ 73 (248)
+++++|.+.|++..+.. | ++..+..+... +...++.++|++.+++..+.+ +.+..++..+...+.. .|+
T Consensus 152 ~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp THHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhH
Confidence 46889999999987643 4 34455444444 445677888998888876653 3455666665555544 467
Q ss_pred hhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhccccc-------------
Q 039342 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD------------- 140 (248)
Q Consensus 74 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~------------- 140 (248)
.++|.+++++..+.. +.+..++..+-..|...|++++|...+++..+.. |+.......+...+.
T Consensus 229 ~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 229 EGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp -CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 889999999887653 2367788999999999999999999999987654 443322221111111
Q ss_pred ------ccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhcc
Q 039342 141 ------DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRM 214 (248)
Q Consensus 141 ------~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 214 (248)
..+.++.+...++...+.... +..++..+-..+...|++++|.+.|++..+....|... ..+...+..-.+
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~--~~~~~~~~~~~~ 382 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK--QLLHLRYGNFQL 382 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHH
Confidence 123456677777776665432 45567888899999999999999999988764333221 111111111123
Q ss_pred ccchHHHHHHHHHHHH
Q 039342 215 WEGGAYTAISVWLNKM 230 (248)
Q Consensus 215 ~~~g~~~~~~~~~~~m 230 (248)
...|+.++|...+++-
T Consensus 383 ~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HTSSCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 3567777777666554
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.75 E-value=1.3e-06 Score=65.59 Aligned_cols=155 Identities=11% Similarity=0.099 Sum_probs=114.8
Q ss_pred CCchHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C-CCHHHHHHHHHHHHh-----
Q 039342 1 GGLYKECQAILSRMSESGVARN---SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC-D-PNERTLEAVLSVYCF----- 70 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~---~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~-p~~~t~~~ll~~~~~----- 70 (248)
.|++++|.+.|+++.+.... + ...+..+-.++.+.|++++|...|++..+..- . .....+..+-.++.+
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~ 106 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPY 106 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCT
T ss_pred hCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccc
Confidence 38999999999999875421 2 67888889999999999999999999977531 1 224567777788888
Q ss_pred ---cCChhHHHHHHHHHHHCCCCcC-HhhH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-c-h
Q 039342 71 ---AGLVDESKEQFQEIKSSGILPS-VMCY-----------------CMLLAVYAKSNRWDDAYGLLDEMHTNRIS-N-I 127 (248)
Q Consensus 71 ---~g~~~~a~~~~~~m~~~~~~p~-~~~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-~ 127 (248)
.|++++|...|++..+.. |+ .... ..+-..|.+.|++++|+..|++..+.... + .
T Consensus 107 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 184 (261)
T 3qky_A 107 ELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWA 184 (261)
T ss_dssp TSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH
T ss_pred cccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchH
Confidence 999999999999998752 32 2333 45577888999999999999999875422 1 1
Q ss_pred HHhHHHHhccccc----------ccchHHHHHHHHHHHHhcC
Q 039342 128 HQVTGQMIKGEFD----------DESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 128 ~~~~~~~l~~~~~----------~~~~~~~a~~~~~~m~~~~ 159 (248)
...+..+... +. ..++++.|...++...+..
T Consensus 185 ~~a~~~l~~~-~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 185 DDALVGAMRA-YIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHH-HHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 2233333332 32 2388999999999988764
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.75 E-value=3.3e-07 Score=70.19 Aligned_cols=128 Identities=12% Similarity=-0.011 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhccc
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE 138 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~ 138 (248)
.+..+-..+.+.|++++|...|++..+.. | +...+..+...+.+.|++++|...+++..... |+...........
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 33344444444455555555544444321 2 33344444444444555555555444443222 2221111111111
Q ss_pred ccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 139 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
+...+..+.+...++....... .+...+..+-..+...|++++|...|.+..+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2222233333444444333321 1344444444555555555555555555443
No 95
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.75 E-value=1.9e-06 Score=73.60 Aligned_cols=225 Identities=8% Similarity=0.058 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 039342 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAI-KAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQE 83 (248)
Q Consensus 5 ~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 83 (248)
+++..+|++.... .+-+...|-.....+...|+.++|. ++|++... .++.+...|-..+...-+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~-~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ-CIPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455667766543 2346778888888888899999996 99999875 3456666777888889999999999999999
Q ss_pred HHHCC---------CCcC------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CchHHhHHHHhccccc
Q 039342 84 IKSSG---------ILPS------------VMCYCMLLAVYAKSNRWDDAYGLLDEMHTN-RI-SNIHQVTGQMIKGEFD 140 (248)
Q Consensus 84 m~~~~---------~~p~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~-~~~~~~~~~~l~~~~~ 140 (248)
+.+.. -.|+ ..+|...+....+.|..+.|..+|.+..+. +. .+...+....+. +.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~ 481 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HH
Confidence 87631 0132 346888888888999999999999999876 32 222223233333 33
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHH
Q 039342 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220 (248)
Q Consensus 141 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~ 220 (248)
..++.+.|..+|+...+. +.-+...+...++.....|+.+.|..+|++.....-.++ ....+|...+.--.+.|..
T Consensus 482 ~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~---~~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH---LLKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT---HHHHHHHHHHHHHHHTCCS
T ss_pred hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHcCCH
Confidence 345679999999988876 333566677888888889999999999999876532221 2445566655667788999
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 039342 221 TAISVWLNKMYEMFMMGED 239 (248)
Q Consensus 221 ~~~~~~~~~m~~~~~~~~~ 239 (248)
+.+..+.+++.+. .|+.
T Consensus 558 ~~~~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 558 NSVRTLEKRFFEK--FPEV 574 (679)
T ss_dssp HHHHHHHHHHHHH--STTC
T ss_pred HHHHHHHHHHHHh--CCCC
Confidence 9999999999887 4543
No 96
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=1.8e-06 Score=62.64 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=44.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC
Q 039342 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 108 (248)
+-..+...|++++|.+.|++. +.|+...|..+..+|.+.|++++|.+.|++..+.. +.+...|..+-..|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 334444555555555555443 23445555555555555555555555555544332 1234445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 039342 109 WDDAYGLLDEMHT 121 (248)
Q Consensus 109 ~~~a~~~~~~m~~ 121 (248)
+++|+..|++..+
T Consensus 87 ~~~A~~~~~~al~ 99 (213)
T 1hh8_A 87 YDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.71 E-value=2.4e-07 Score=79.59 Aligned_cols=170 Identities=9% Similarity=-0.054 Sum_probs=130.7
Q ss_pred CCchHHHHHHHHHHH--------HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 039342 1 GGLYKECQAILSRMS--------ESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~--------~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 72 (248)
.|++++|++.|++.. +.. +.+...|..+-..+.+.|++++|.+.|++..+.+ +-+...|..+-.+|.+.|
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcC
Confidence 378899999999987 322 3467889999999999999999999999997754 356788899999999999
Q ss_pred ChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHH
Q 039342 73 LVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYV 151 (248)
Q Consensus 73 ~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 151 (248)
++++|.+.|++..+.. | +...|..+-.+|.+.|++++ +..|++..+.. |+.......+...+...|++++|...
T Consensus 482 ~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp CHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999988753 4 56788999999999999999 99999988765 44433333333337778899999999
Q ss_pred HHHHHhcCCCCC-HHHHHHHHHHHHhcCc
Q 039342 152 FDKLNCEGYGLG-MRFYNALLEALWCLGL 179 (248)
Q Consensus 152 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 179 (248)
|++..+.+ |+ ...+..+..++...++
T Consensus 557 ~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 98776543 43 5566666677655444
No 98
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.70 E-value=5.9e-07 Score=75.45 Aligned_cols=153 Identities=10% Similarity=-0.069 Sum_probs=110.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHH
Q 039342 36 GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115 (248)
Q Consensus 36 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 115 (248)
.|++++|.+.+++..+.. +-+...|..+-..|.+.|++++|.+.|++..+.. +.+...+..+-..|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999886543 3457889999999999999999999999998763 22578899999999999999999999
Q ss_pred HHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CchHHHHHHHHHHHH
Q 039342 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL---GLRERAARVLDEATK 192 (248)
Q Consensus 116 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~ 192 (248)
+++..+.. |+.......+...+...|++++|...+++..+.... +...+..+...+... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99988764 444333333334477889999999999998876533 577888899999999 999999999999876
Q ss_pred C
Q 039342 193 R 193 (248)
Q Consensus 193 ~ 193 (248)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 4
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.70 E-value=2e-07 Score=65.94 Aligned_cols=161 Identities=7% Similarity=0.009 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH-H
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV-Y 103 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~ 103 (248)
.+...-..+.+.|++++|...|++..+.. +-+...+..+-..+.+.|++++|...++...+. .|+...+...... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHH
Confidence 34455566777778888887777765432 335566777777777788888888777776543 2333222221111 1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCchHH
Q 039342 104 AKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL-GMRFYNALLEALWCLGLRER 182 (248)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~ 182 (248)
...+...+|...+++..+.. |+.......+...+...|+++.|...++...+....+ +...+..+...+...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 12122233555666555432 4333222222223555666666666666666554332 24456666666666677666
Q ss_pred HHHHHHHH
Q 039342 183 AARVLDEA 190 (248)
Q Consensus 183 a~~~~~~m 190 (248)
|...|++.
T Consensus 163 A~~~y~~a 170 (176)
T 2r5s_A 163 IASKYRRQ 170 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 100
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.68 E-value=1.3e-06 Score=71.27 Aligned_cols=34 Identities=6% Similarity=-0.240 Sum_probs=12.8
Q ss_pred CcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHc
Q 039342 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMM 236 (248)
Q Consensus 198 ~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~ 236 (248)
+..+|..+- ..|...|++++|.+.+++-.+.+-.
T Consensus 429 ~~~~~~~LG-----~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 429 DSEALHVLA-----FLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp CTTHHHHHH-----HHHHHHHHCC---------------
T ss_pred CHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 455666555 5667788888888888877765543
No 101
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=2.9e-06 Score=61.43 Aligned_cols=117 Identities=14% Similarity=0.033 Sum_probs=96.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|++++|.+.|++.. .|+...|..+-..+.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|.+.|
T Consensus 20 ~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 94 (213)
T 1hh8_A 20 KDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDL 94 (213)
T ss_dssp TCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHH
Confidence 78899999998774 5788899999999999999999999999987664 456788889999999999999999999
Q ss_pred HHHHHCCC--------------Cc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 82 QEIKSSGI--------------LP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 82 ~~m~~~~~--------------~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
++..+... .| ....+..+-..|.+.|++++|...|++..+..
T Consensus 95 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 95 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99887421 12 22677888888888899999999888877654
No 102
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.65 E-value=3e-06 Score=76.55 Aligned_cols=184 Identities=14% Similarity=0.193 Sum_probs=135.1
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+-.++.+.|++++|.+.|
T Consensus 1063 glyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 67889999998852 22333344433 667899999888865 33678999999999999999999999
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
.+- -|...|..++.+|.+.|++++|.+.|..-++.. ++......+... +.+.++++...... + .
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Lafa-YAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA-LAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHH-HHhhcCHHHHHHHH----h---C
Confidence 553 367788999999999999999999999877655 222222234433 55556666544442 1 3
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHH
Q 039342 162 LGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNK 229 (248)
Q Consensus 162 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~ 229 (248)
|+...|..+-..|...|++++|..+|... ..|..+. ..+.+.|++++|.+..++
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA-----~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLA-----STLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHH-----HHHHHhCCHHHHHHHHHH
Confidence 56677778999999999999999999984 2455555 677777888887776654
No 103
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.65 E-value=7.8e-06 Score=62.58 Aligned_cols=178 Identities=9% Similarity=-0.012 Sum_probs=103.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC-CCcCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH-----HhHHH
Q 039342 64 VLSVYCFAGLVDESKEQFQEIKSSG-ILPSV----MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH-----QVTGQ 133 (248)
Q Consensus 64 ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~ 133 (248)
.+..+.+.|++++|.+++++..+.. ..|+. ..+..+...+...+++++|+..|++..+....... ..++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3667778888888888888876532 22332 13334555666677888888888887763222111 12333
Q ss_pred HhcccccccchHHHHHHHHHHHHh----c-CCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHh
Q 039342 134 MIKGEFDDESNWQMVEYVFDKLNC----E-GYGLG-MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVW 207 (248)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 207 (248)
+- ..+...|+++.|...++...+ . +..+. ..+|..+...|.+.|++++|.+.+++..+..-..+...+...++
T Consensus 161 lg-~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 161 IA-NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HH-HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HH-HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 33 236667778888888877663 1 22222 33677888888899999999988887653211111111112222
Q ss_pred hhhhhccccch-HHHHHHHHHHHHHHHHHcCCCCCc
Q 039342 208 SVDVHRMWEGG-AYTAISVWLNKMYEMFMMGEDLPQ 242 (248)
Q Consensus 208 ~~~~~~~~~~g-~~~~~~~~~~~m~~~~~~~~~~~~ 242 (248)
..+-..+.+.| .+++|...+++-.+..-.-+...+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~ 275 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGG
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22225566677 457788777776655444443333
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.63 E-value=1e-06 Score=67.49 Aligned_cols=167 Identities=7% Similarity=-0.031 Sum_probs=130.5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHH-
Q 039342 20 ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM- 98 (248)
Q Consensus 20 ~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~- 98 (248)
+.+...+..+-..+.+.|++++|.+.|++..+.. +-+...+..+...+.+.|++++|...+++..+. .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3456778888888999999999999999997764 346678889999999999999999999988764 355443332
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhc
Q 039342 99 LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL-GMRFYNALLEALWCL 177 (248)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~ 177 (248)
....+...++.+.|...+++..+.. |+.......+...+...|++++|...+....+..... +...+..+...+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 3333667788888999999887765 5555444444444778899999999999998875432 367899999999999
Q ss_pred CchHHHHHHHHHHH
Q 039342 178 GLRERAARVLDEAT 191 (248)
Q Consensus 178 g~~~~a~~~~~~m~ 191 (248)
|+.++|...+++-.
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999999888643
No 105
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=7.8e-06 Score=62.58 Aligned_cols=165 Identities=10% Similarity=-0.003 Sum_probs=119.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cC----HhhHH
Q 039342 28 AVIEAFRQGGRFEEAIKAYVEMEKVR-CDPNE----RTLEAVLSVYCFAGLVDESKEQFQEIKSSGIL-PS----VMCYC 97 (248)
Q Consensus 28 ~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~ 97 (248)
..+..+...|++++|.+++++..+.. ..|+. ..+..+...+...|++++|...|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34678889999999999999987642 22332 23345666777888999999999999874222 22 23689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCchHHhHHHHhcccccccchHHHHHHHHHHHHhc----CCCCC-HHHH
Q 039342 98 MLLAVYAKSNRWDDAYGLLDEMHT----N-RISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE----GYGLG-MRFY 167 (248)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~m~~----~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~ 167 (248)
.+-..|...|++++|+..|++..+ . +..+.......-+...+...|+++.|...+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999873 2 223333323333334477889999999988876542 33333 6788
Q ss_pred HHHHHHHHhcCc-hHHHHHHHHHHHH
Q 039342 168 NALLEALWCLGL-RERAARVLDEATK 192 (248)
Q Consensus 168 ~~li~~~~~~g~-~~~a~~~~~~m~~ 192 (248)
..+-.++.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 889999999994 6999999987653
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.61 E-value=4.9e-07 Score=62.18 Aligned_cols=123 Identities=11% Similarity=0.022 Sum_probs=89.5
Q ss_pred CchHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 2 GLYKECQAILSRMSESGVAR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
|++++|.+.+...... .| +...+-.+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|...
T Consensus 11 ~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 11 ADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 5678888888776542 23 34456667788888899999999998887654 34677888888888999999999999
Q ss_pred HHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCchHHhH
Q 039342 81 FQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGL-LDEMHTNRISNIHQVT 131 (248)
Q Consensus 81 ~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~~~~~~~~~~ 131 (248)
|++..+. .| +...|..+-..|.+.|+.++|... +++..+.. |+....
T Consensus 88 ~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~ 136 (150)
T 4ga2_A 88 YRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAV 136 (150)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHH
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHH
Confidence 9888765 34 567788888888888888766554 46655432 544433
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.61 E-value=1.2e-06 Score=75.21 Aligned_cols=157 Identities=10% Similarity=-0.043 Sum_probs=124.2
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh
Q 039342 34 RQGGRFEEAIKAYVEME--------KVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK 105 (248)
Q Consensus 34 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 105 (248)
...|++++|.+.+++.. +. -+.+...+..+-.++.+.|++++|.+.|++..+.. +-+...|..+-.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999987 32 24456788888999999999999999999998753 2267789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 039342 106 SNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAAR 185 (248)
Q Consensus 106 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 185 (248)
.|++++|+..|++..+.. |+.......+...+...|++++ ...|++..+.+.. +...|..+-.++.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999988764 4443333333333667778888 8888888776543 57788999999999999999999
Q ss_pred HHHHHHHCCCCCC
Q 039342 186 VLDEATKRGLFPE 198 (248)
Q Consensus 186 ~~~~m~~~g~~p~ 198 (248)
.|++..+. .|+
T Consensus 556 ~~~~al~l--~P~ 566 (681)
T 2pzi_A 556 TLDEVPPT--SRH 566 (681)
T ss_dssp HHHTSCTT--STT
T ss_pred HHHhhccc--Ccc
Confidence 99987543 454
No 108
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=1.9e-06 Score=56.30 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=84.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
...|..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5788888899999999999999999987654 4567888899999999999999999999988653 2367788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 039342 103 YAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~ 123 (248)
+...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 999999999999999987654
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.60 E-value=4.2e-06 Score=60.77 Aligned_cols=159 Identities=9% Similarity=0.052 Sum_probs=112.9
Q ss_pred CCchHHHHHHHHHHHHcCCCC-CHHhHHH----------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVAR-NSDSFNA----------------VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~-~~~~y~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 63 (248)
.|++++|...|++..+.. | +...|.. +-..+.+.|++++|...|++..+.. +-+...+..
T Consensus 17 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 93 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEA 93 (208)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 389999999999987743 4 3556666 8889999999999999999998764 346788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCchHHhHHHHhccccc
Q 039342 64 VLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNR--WDDAYGLLDEMHTNRISNIHQVTGQMIKGEFD 140 (248)
Q Consensus 64 ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~ 140 (248)
+-.++...|++++|...|++..+.. | +..+|..+-..|...|+ .+.+...++.... ..|....+...-.+ ..
T Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~-~~ 168 (208)
T 3urz_A 94 CAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLS-KL 168 (208)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHH-HH
Confidence 9999999999999999999998753 4 56788888887766554 4455556655432 22222222221111 33
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCHHHHHH
Q 039342 141 DESNWQMVEYVFDKLNCEGYGLGMRFYNA 169 (248)
Q Consensus 141 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 169 (248)
..+++++|...|++..+. .|+......
T Consensus 169 ~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 169 FTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 467889999999987764 566554433
No 110
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=1.5e-06 Score=62.41 Aligned_cols=158 Identities=14% Similarity=-0.010 Sum_probs=92.3
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChhH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV----RCD-PNERTLEAVLSVYCFAGLVDE 76 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~t~~~ll~~~~~~g~~~~ 76 (248)
|++++|.++++.+.. ........++.+-..+...|++++|...+++..+. +.. ....++..+-..|...|++++
T Consensus 6 g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 6 HDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp -CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 677777775544433 11234567777777777777777777777776441 111 223456666667777777777
Q ss_pred HHHHHHHHHHC----CCCc--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHH
Q 039342 77 SKEQFQEIKSS----GILP--SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150 (248)
Q Consensus 77 a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (248)
|.+.+++..+. +-.| ....+..+-..+...|++++|...+++..+..
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------- 137 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA--------------------------- 137 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---------------------------
Confidence 77777765432 2111 23456666667777777777777776653220
Q ss_pred HHHHHHhcCCC-CCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 151 VFDKLNCEGYG-LGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 151 ~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
...+.. .-..++..+-..+...|++++|.+.+++..+
T Consensus 138 -----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 138 -----QQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp -----HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 000000 1123356666777777888877777776543
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.59 E-value=8e-06 Score=59.98 Aligned_cols=173 Identities=10% Similarity=-0.073 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-Cc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-chH-HhHH
Q 039342 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGI-LP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS-NIH-QVTG 132 (248)
Q Consensus 57 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~~ 132 (248)
+...+-.+...+.+.|++++|...|+++.+... .| ....+..+..+|.+.|++++|+..|++..+..-. +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344555667788999999999999999986521 12 1357788889999999999999999999875422 111 1111
Q ss_pred HHhcc-----------------cccccchHHHHHHHHHHHHhcCCCCCHHHH-----------------HHHHHHHHhcC
Q 039342 133 QMIKG-----------------EFDDESNWQMVEYVFDKLNCEGYGLGMRFY-----------------NALLEALWCLG 178 (248)
Q Consensus 133 ~~l~~-----------------~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g 178 (248)
.+-.. .....++++.|...|+.+.+.... +.... ..+...|.+.|
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11111 122467899999999998876422 11111 23456788999
Q ss_pred chHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHH
Q 039342 179 LRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 179 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
++++|...|+++.+. .|+... ..-.+..+...+.+.|+.++|...++.+...
T Consensus 162 ~~~~A~~~~~~~l~~--~p~~~~-~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRD--YPDTQA-TRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp CHHHHHHHHHHHHHH--STTSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHH--CcCCCc-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 999999999998875 454321 1122223347888999999999999877765
No 112
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=7.1e-06 Score=56.67 Aligned_cols=99 Identities=10% Similarity=0.057 Sum_probs=76.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
...|..+-..+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...|..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4567777778888888988888888876653 3467778888888888888888888888877653 2356677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 039342 103 YAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~~~ 123 (248)
+...|++++|...|++..+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhccHHHHHHHHHHHHHhC
Confidence 888888888888888776543
No 113
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=6.4e-06 Score=62.81 Aligned_cols=192 Identities=9% Similarity=-0.011 Sum_probs=126.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHH
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 100 (248)
.+...+..+-..+.+.|++++|...|++..+.. +-+...|..+-.+|.+.|++++|...+++..+.. +.+...+..+-
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356778888899999999999999999987753 3478889999999999999999999999988753 22677889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCchHH-----hHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039342 101 AVYAKSNRWDDAYGLLDEMHTNRISNIHQ-----VTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175 (248)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 175 (248)
.+|...|++++|...|++..+.. |+.. .....+. . ... .-+..........+......+ ..+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~--~------~~~-~~~~~~~~~~~~~~~~i~~~l-~~l- 146 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR--I------AKK-KRWNSIEERRIHQESELHSYL-TRL- 146 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH--H------HHH-HHHHHHHHTCCCCCCHHHHHH-HHH-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH--H------HHH-HHHHHHHHHHHhhhHHHHHHH-HHH-
Confidence 99999999999999999876542 3221 1111111 0 111 112223333344444443333 333
Q ss_pred hcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccc-hHHHHHHHHHHHHHHH
Q 039342 176 CLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEG-GAYTAISVWLNKMYEM 233 (248)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~-g~~~~~~~~~~~m~~~ 233 (248)
..|+.++|.+.++...+. .|+......-+ ...+.+. +.++++.++|++..+.
T Consensus 147 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~l----~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 147 IAAERERELEECQRNHEG--HEDDGHIRAQQ----ACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHTTTSGGGTT--TSCHHHHTHHH----HHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHhhhcc--ccchhhhhhHH----HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 368888998888776543 55532222222 1222333 6677788888776654
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.55 E-value=1.9e-05 Score=57.51 Aligned_cols=185 Identities=9% Similarity=-0.015 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC----CHHHHHHHH
Q 039342 41 EAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN----RWDDAYGLL 116 (248)
Q Consensus 41 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~ 116 (248)
+|++.|++..+. -+...+..+-..|...+++++|.+.|++..+.| +...+..|-..|.. + +.++|+..|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 466777777665 467778888888999999999999999998876 56677777777777 6 899999999
Q ss_pred HHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCchHHHHHHHHHHH
Q 039342 117 DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG-LGMRFYNALLEALWC----LGLRERAARVLDEAT 191 (248)
Q Consensus 117 ~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~ 191 (248)
++..+.+...-...+..+........++++.|...|+...+.|.. .+...+..|-..|.. .++.++|...|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999887643322222222222123367899999999998877642 126677888888888 889999999999988
Q ss_pred HCCCCCCcchhhhHHhhhhhhccc--cchHHHHHHHHHHHHHHHHH
Q 039342 192 KRGLFPELFRHNKLVWSVDVHRMW--EGGAYTAISVWLNKMYEMFM 235 (248)
Q Consensus 192 ~~g~~p~~~t~~~li~~~~~~~~~--~~g~~~~~~~~~~~m~~~~~ 235 (248)
+.+ .+...+..|-..+ ..+.. ...+.++|..+++.-.+.|.
T Consensus 157 ~~~--~~~~a~~~Lg~~y-~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SLS--RTGYAEYWAGMMF-QQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HTS--CTTHHHHHHHHHH-HHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcC--CCHHHHHHHHHHH-HcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 762 2223333333211 12211 23388999999988777653
No 115
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=1.8e-06 Score=61.94 Aligned_cols=171 Identities=11% Similarity=-0.027 Sum_probs=97.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCc-CHhhHHHHHHHHHhcCC
Q 039342 34 RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS----SGILP-SVMCYCMLLAVYAKSNR 108 (248)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~~~ 108 (248)
...|++++|.+.++.+.. ........+..+-..+...|++++|...+++..+ .+..| ...++..+-..+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356777777774444432 1123456666667777777777777777766654 12222 23456666666667777
Q ss_pred HHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCchHHHHHH
Q 039342 109 WDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL--GMRFYNALLEALWCLGLRERAARV 186 (248)
Q Consensus 109 ~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~ 186 (248)
+++|...+++..+.. ...+-.| ....+..+-..+...|++++|...
T Consensus 82 ~~~A~~~~~~al~~~--------------------------------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 129 (203)
T 3gw4_A 82 WDAARRCFLEERELL--------------------------------ASLPEDPLAASANAYEVATVALHFGDLAGARQE 129 (203)
T ss_dssp HHHHHHHHHHHHHHH--------------------------------HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------------------------------HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 777766666543220 0111111 134567778888899999999999
Q ss_pred HHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcC
Q 039342 187 LDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMG 237 (248)
Q Consensus 187 ~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~ 237 (248)
+++..+..-..+...........+-..+...|++++|...+++-.+..-..
T Consensus 130 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 130 YEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 988653211111111112222333366778899999999888877665443
No 116
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=3.1e-06 Score=59.53 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=91.7
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCh--hHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV-YCFAGLV--DESK 78 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~~--~~a~ 78 (248)
|++++|...|.+..+.. +.+...|..+-..|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 67778888888876643 2467888888889999999999999999887654 3466777777777 7788888 9999
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
..+++..+.. +.+...+..+...|...|++++|...|++..+..
T Consensus 102 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 102 AMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999887653 2256778888888999999999999999887654
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=7.4e-06 Score=56.58 Aligned_cols=117 Identities=8% Similarity=-0.018 Sum_probs=94.1
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|...|.+..+... .+...|..+...+...|++++|.+.+++..+.. +.+...|..+..++.+.|++++|.+.
T Consensus 26 ~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 103 (166)
T 1a17_A 26 AKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRD 103 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 3789999999999877542 368889999999999999999999999987764 45678899999999999999999999
Q ss_pred HHHHHHCCCCcCHhhH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 81 FQEIKSSGILPSVMCY--CMLLAVYAKSNRWDDAYGLLDEMH 120 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~ 120 (248)
|++..+... .+...+ -.....+.+.|++++|+..+.+..
T Consensus 104 ~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 104 YETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999887532 234444 334444778899999999988754
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.50 E-value=1.3e-06 Score=61.66 Aligned_cols=149 Identities=11% Similarity=0.110 Sum_probs=105.9
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChhHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV-YCFAGLVDESKE 79 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~~~~a~~ 79 (248)
.|++++|...|++..+.. +-+...+..+-..+.+.|++++|...++...+.. |+...+...... +...+....+..
T Consensus 19 ~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~ 95 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELK 95 (176)
T ss_dssp TTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHH
Confidence 388999999999876533 2367889999999999999999999999986543 355444332212 223334445788
Q ss_pred HHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHhHHHHhcccccccchHHHHHHHHHHH
Q 039342 80 QFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI-HQVTGQMIKGEFDDESNWQMVEYVFDKL 155 (248)
Q Consensus 80 ~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 155 (248)
.+++..+. .| +...+..+-..+...|++++|...|++..+....+. ...+..+... +...|+.+.+...|+..
T Consensus 96 ~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~-~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 96 RLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI-LSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH-HHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH-HHHhCCCCcHHHHHHHH
Confidence 88888764 35 578899999999999999999999999987753332 2334444333 56667777777777654
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=3.6e-05 Score=58.85 Aligned_cols=166 Identities=12% Similarity=0.028 Sum_probs=102.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CcC--Hh
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE-----RTLEAVLSVYCFAGLVDESKEQFQEIKSSGI---LPS--VM 94 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~p~--~~ 94 (248)
.+...+..+...|++++|.+.+.+..+..-..+. ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566777888888888888776554322111 2233345556677788888888887764311 111 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCchH--HhHHHHhcccccccchHHHHHHHHHHHHhc----CCCC-C
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEMHT---N-RISNIH--QVTGQMIKGEFDDESNWQMVEYVFDKLNCE----GYGL-G 163 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~-~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~ 163 (248)
+|+.+-..|...|++++|+..|++..+ . +..+.. .++..+-.. +...|+++.|...+++..+. +..+ -
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~-y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA-LYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH-HHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 777888888888888888888887652 1 111111 233333333 66777788888877765432 1111 1
Q ss_pred HHHHHHHHHHHHhcCchHHH-HHHHHHHH
Q 039342 164 MRFYNALLEALWCLGLRERA-ARVLDEAT 191 (248)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 191 (248)
..+|..+-..|.+.|+.++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56677777888888888888 66666543
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.49 E-value=1.1e-05 Score=53.53 Aligned_cols=109 Identities=9% Similarity=0.057 Sum_probs=89.3
Q ss_pred CCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHH
Q 039342 19 VARN-SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC 97 (248)
Q Consensus 19 ~~~~-~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 97 (248)
+.|+ ...|...-..|.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|.+.|++..+.. +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 3444 4577778888999999999999999987664 4578889999999999999999999999988753 22577899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhH
Q 039342 98 MLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT 131 (248)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 131 (248)
.+-.+|...|++++|+..|++..+.. |+....
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~--P~~~~a 117 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVD--PSNEEA 117 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC--cCCHHH
Confidence 99999999999999999999987654 554433
No 121
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.45 E-value=0.00013 Score=59.50 Aligned_cols=212 Identities=8% Similarity=-0.055 Sum_probs=90.4
Q ss_pred chHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChh
Q 039342 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQG----GRFEEAIKAYVEMEKVRCDPNERTLEAVLSV-Y--CFAGLVD 75 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~-~--~~~g~~~ 75 (248)
+.++|.+.|....+.|. ++...+..+-..|... +++++|.+.|++.. .| +...+..+-.. + ...++++
T Consensus 194 ~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHH
T ss_pred cHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHH
Confidence 44455555555544442 2333333333333332 35555555555544 22 12222223222 2 2345555
Q ss_pred HHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHH
Q 039342 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN-----RWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEY 150 (248)
Q Consensus 76 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 150 (248)
+|.+.|++..+.| +...+..|-..|. .| +.++|+..|++.. .|...-...+..+.........++++|..
T Consensus 269 ~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 269 QMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 5555555555444 3334444444443 23 5555555555444 22111111111111110112335566666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHH
Q 039342 151 VFDKLNCEGYGLGMRFYNALLEALWC----LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVW 226 (248)
Q Consensus 151 ~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~ 226 (248)
.|+...+.|.. .....+-..|.. ..+.++|...|+...+.|...-..... .+ ......++..++.++
T Consensus 344 ~~~~Aa~~g~~---~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~-~l-----~~~~~~~~~~~a~~~ 414 (452)
T 3e4b_A 344 HLLTAARNGQN---SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLAT-QL-----EAPLTPAQRAEGQRL 414 (452)
T ss_dssp HHHHHHTTTCT---THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHH-HH-----HTTCCHHHHHHHHHH
T ss_pred HHHHHHhhChH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HH-----HHhCCHHHHHHHHHH
Confidence 66655554432 223333334432 335666666666655555322111111 11 333455666777777
Q ss_pred HHHHHHH
Q 039342 227 LNKMYEM 233 (248)
Q Consensus 227 ~~~m~~~ 233 (248)
.++.++.
T Consensus 415 ~~~~~~~ 421 (452)
T 3e4b_A 415 VQQELAA 421 (452)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7766555
No 122
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.45 E-value=7.6e-05 Score=60.87 Aligned_cols=213 Identities=11% Similarity=0.023 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhH
Q 039342 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGG---RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA----GLVDE 76 (248)
Q Consensus 4 ~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----g~~~~ 76 (248)
.+.+..++..... .++..+..+-..|.+.| +.++|++.|++..+.| .++...+..+-..|... +++++
T Consensus 161 ~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 161 LDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 3444444444433 33447888888888899 8999999999998887 46666656666677554 78999
Q ss_pred HHHHHHHHHHCCCCcCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHH
Q 039342 77 SKEQFQEIKSSGILPSVMCYCMLLAV-Y--AKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD 153 (248)
Q Consensus 77 a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 153 (248)
|.+.|++.. .| +...+..+-.. + ...++.++|+..|++..+.|...-......+.........++++|...|+
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999877 33 45555555555 3 46889999999999998887322222222221111223448899999988
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHH
Q 039342 154 KLNCEGYGLGMRFYNALLEALWC----LGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNK 229 (248)
Q Consensus 154 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~ 229 (248)
... .-+...+..+-..|.. ..+.++|...|++..+.|...- ...|-.. ...|.....+.++|..+++.
T Consensus 312 ~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A---~~~Lg~~-y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 312 KAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA---DFAIAQL-FSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp TTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH---HHHHHHH-HHSCTTBCCCHHHHHHHHHH
T ss_pred HHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH---HHHHHHH-HHhCCCCCCCHHHHHHHHHH
Confidence 766 3356666777777766 3489999999999888764322 2222211 11333334567777777765
Q ss_pred HHHH
Q 039342 230 MYEM 233 (248)
Q Consensus 230 m~~~ 233 (248)
-.+.
T Consensus 384 A~~~ 387 (452)
T 3e4b_A 384 AKAQ 387 (452)
T ss_dssp HHTT
T ss_pred HHHC
Confidence 4443
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.44 E-value=2.7e-06 Score=58.33 Aligned_cols=112 Identities=9% Similarity=0.021 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 039342 8 QAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87 (248)
Q Consensus 8 ~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 87 (248)
.+.|++..+.. +.+...+..+-..+.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|.+.|++..+.
T Consensus 7 ~~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34455554422 1246677788888999999999999999987654 457788888999999999999999999998875
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 88 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
. +.+...+..+-.+|...|++++|...|++..+.
T Consensus 85 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 D-IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp S-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 225678888999999999999999999988654
No 124
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.43 E-value=6.2e-06 Score=63.68 Aligned_cols=189 Identities=11% Similarity=0.086 Sum_probs=125.1
Q ss_pred cCCHHHHHHHHHHHHHc------CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCc-CHhhHHHHH
Q 039342 36 GGRFEEAIKAYVEMEKV------RCDPNE----RTLEAVLSVYCFAGLVDESKEQFQEIKSS----GILP-SVMCYCMLL 100 (248)
Q Consensus 36 ~~~~~~a~~~~~~m~~~------~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li 100 (248)
.|++++|.+++++..+. +..++. ..|+.....|...|++++|.+.|.+..+. +-.+ -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777765432 112443 35666778889999999999999887643 2111 245888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCch-HHhHHHHhcccccccchHHHHHHHHHHHHhc----CCCC-CHHHHHHH
Q 039342 101 AVYAKSNRWDDAYGLLDEMHTN----RISNI-HQVTGQMIKGEFDDESNWQMVEYVFDKLNCE----GYGL-GMRFYNAL 170 (248)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l 170 (248)
..|.+.|++++|+..|++..+. |-... ...+..+-.. +.. |+++.|...+++..+. +-.+ ...+++.+
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~-~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL-MEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 9999999999999999886432 22222 2233333333 556 9999999999876543 1111 14678888
Q ss_pred HHHHHhcCchHHHHHHHHHHHHC----CCCCCcc-hhhhHHhhhhhhccccchHHHHHHHHHHHHH
Q 039342 171 LEALWCLGLRERAARVLDEATKR----GLFPELF-RHNKLVWSVDVHRMWEGGAYTAISVWLNKMY 231 (248)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~-t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~ 231 (248)
-..+.+.|++++|...|++..+. +..+... .+..+. ..+...|++++|...+++..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g-----~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV-----LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH-----HHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999987652 2111100 111111 34455689999988888766
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=7.9e-06 Score=54.09 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=85.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHH
Q 039342 20 ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99 (248)
Q Consensus 20 ~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 99 (248)
+.+...|..+-..+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3457788889999999999999999999987653 3467888889999999999999999999988753 2357788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 100 LAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 100 i~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
...+.+.|++++|...|++..+..
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999887653
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.43 E-value=1.5e-05 Score=51.83 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=81.1
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|...
T Consensus 22 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (125)
T 1na0_A 22 QGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEY 99 (125)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 378999999999988754 2467889999999999999999999999997764 45778899999999999999999999
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHH
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYA 104 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~ 104 (248)
|++..+.. +.+...+..+-..+.
T Consensus 100 ~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 100 YQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHH
Confidence 99988653 124445555444443
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.42 E-value=9.7e-06 Score=55.76 Aligned_cols=100 Identities=11% Similarity=-0.007 Sum_probs=84.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
+...+..+-..+.+.|++++|...|++..+.. +-+...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 35577788888999999999999999987764 4567888899999999999999999999988753 225678889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 039342 102 VYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
+|.+.|++++|...|++..+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999987754
No 128
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.39 E-value=2.1e-05 Score=67.27 Aligned_cols=198 Identities=9% Similarity=-0.021 Sum_probs=140.1
Q ss_pred CchHHHH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCC------------HH
Q 039342 2 GLYKECQ-AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC---------DPN------------ER 59 (248)
Q Consensus 2 g~~~~a~-~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~---------~p~------------~~ 59 (248)
|+.++|. ++|++.... .+.+...|-..+...-+.|+++.|.++|+.+.+... .|+ ..
T Consensus 357 ~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp SCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 5667786 999988753 334667788888889999999999999999876410 142 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCchHHhHH-HHhc
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSS-GILPSVMCYCMLLAVYAK-SNRWDDAYGLLDEMHTNRISNIHQVTG-QMIK 136 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~-~~l~ 136 (248)
.|...+....+.|..+.|.++|....+. +. ++...|-.....--+ .++.+.|..+|+...+. .|+...+. ..+.
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHH
Confidence 6888888888999999999999999875 21 122333322222223 35599999999998876 24333333 3333
Q ss_pred ccccccchHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHH
Q 039342 137 GEFDDESNWQMVEYVFDKLNCEGYGL--GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206 (248)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 206 (248)
+....++.+.|..+|+........+ ....|...++.-.+.|+.+.+.++.+++.+. .|+......++
T Consensus 513 -fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~ 581 (679)
T 4e6h_A 513 -FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFT 581 (679)
T ss_dssp -HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHH
T ss_pred -HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHH
Confidence 2445678899999999987764422 3567888888889999999999999999875 45544444444
No 129
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=9.5e-06 Score=51.85 Aligned_cols=100 Identities=6% Similarity=-0.041 Sum_probs=82.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc--CHhhHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP--SVMCYCML 99 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l 99 (248)
+...|..+-..+.+.|++++|...+++..+.. +.+...+..+-.++.+.|++++|.+.|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45677788888899999999999999987654 3467788888899999999999999999988753 22 46788888
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCC
Q 039342 100 LAVYAKS-NRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 100 i~~~~~~-~~~~~a~~~~~~m~~~~ 123 (248)
...+.+. |++++|.+.+++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 8999999 99999999999887654
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.38 E-value=6.5e-06 Score=54.16 Aligned_cols=101 Identities=10% Similarity=0.044 Sum_probs=81.3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHH
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 100 (248)
.+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 356678888888889999999999999887653 3467788888888999999999999998887653 22567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 039342 101 AVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
..+.+.|++++|...|++..+..
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC
Confidence 88899999999999998877653
No 131
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=4.3e-05 Score=49.11 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=83.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
++..|..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45677888888999999999999999987653 3467888888899999999999999999987753 225778888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 039342 102 VYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
.+...|++++|...+++..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999887654
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.35 E-value=3.3e-05 Score=59.07 Aligned_cols=172 Identities=7% Similarity=-0.030 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---ch--H
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SV----MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS---NI--H 128 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~--~ 128 (248)
..+...+..+...|++++|.+.+++..+..... +. ..+..+...+...|++++|+..+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 345566788899999999999998877643221 11 23444556677889999999999998753221 21 2
Q ss_pred HhHHHHhcccccccchHHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchh
Q 039342 129 QVTGQMIKGEFDDESNWQMVEYVFDKLNCE----GYGL--GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRH 202 (248)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 202 (248)
..++.+- ..+...|+++.|...+++..+. +-.+ ...++..+...|.+.|++++|.+.+++..+..-..+....
T Consensus 156 ~~~~~lg-~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 156 YIENAIA-NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 2333333 3377789999999999887632 2122 2258889999999999999999999987642111111111
Q ss_pred hhHHhhhhhhccccchHHHHH-HHHHHHHH
Q 039342 203 NKLVWSVDVHRMWEGGAYTAI-SVWLNKMY 231 (248)
Q Consensus 203 ~~li~~~~~~~~~~~g~~~~~-~~~~~~m~ 231 (248)
...++..+-..|.+.|+.++| ...+++-.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 122222222566777877777 65555543
No 133
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.34 E-value=1.3e-06 Score=60.10 Aligned_cols=86 Identities=13% Similarity=-0.054 Sum_probs=54.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHH
Q 039342 34 RQGGRFEEAIKAYVEMEKVRCDPN-ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112 (248)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 112 (248)
...|++++|++.+...... .|+ ...+-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-..|.+.|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 3446667777766665432 222 2334456667777777777777777776542 12566777777777777777777
Q ss_pred HHHHHHHHHC
Q 039342 113 YGLLDEMHTN 122 (248)
Q Consensus 113 ~~~~~~m~~~ 122 (248)
+..|++..+.
T Consensus 85 ~~~~~~al~~ 94 (150)
T 4ga2_A 85 VECYRRSVEL 94 (150)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.34 E-value=2.1e-05 Score=61.61 Aligned_cols=100 Identities=7% Similarity=-0.060 Sum_probs=68.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN--------------ERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 87 (248)
+...|..+-..+.+.|++++|...|++..+..-... ...|..+-.+|.+.|++++|...+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667777777777888888888877765432111 466777777777777777777777777654
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 88 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
. +.+...|..+-.+|...|++++|+..|++..+.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 225566777777777777777777777776654
No 135
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=3.7e-05 Score=51.28 Aligned_cols=100 Identities=11% Similarity=0.022 Sum_probs=86.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHH
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 100 (248)
.+...|..+-..+.+.|++++|...|+...+.. +.+...|..+-.++...|++++|...+++..+.. +.+...+..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467889999999999999999999999987764 3467888999999999999999999999988753 22677889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 039342 101 AVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
..|...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.33 E-value=2.4e-05 Score=51.35 Aligned_cols=106 Identities=8% Similarity=-0.012 Sum_probs=86.7
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|.+.|++..+.. +.+...|..+...+...|++++|.+.++...+.. +.+...+..+...+.+.|++++|...
T Consensus 25 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~ 102 (131)
T 2vyi_A 25 VENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAY 102 (131)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 378999999999987654 2467889999999999999999999999987753 34578888999999999999999999
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCCH
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKSNRW 109 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 109 (248)
|++..+.. +.+...+..+...+.+.|+.
T Consensus 103 ~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 103 YKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 99988753 22566777777777776653
No 137
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=7.4e-05 Score=60.12 Aligned_cols=53 Identities=9% Similarity=-0.065 Sum_probs=26.2
Q ss_pred ccccchHHHHHHHHHHHHhc--CC--CC-CHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 139 FDDESNWQMVEYVFDKLNCE--GY--GL-GMRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 139 ~~~~~~~~~a~~~~~~m~~~--~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
+...|+++.|..+++..... +. .| ...+|..+++.|...|++++|..++++..
T Consensus 145 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 145 HYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 44445555555555444322 11 11 13345556666666666666666665543
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.8e-05 Score=51.23 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=82.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
+...|...-..+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|...+++..+.. +.+...|..+-.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34567777888899999999999999987664 4567889999999999999999999999988753 225778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 039342 102 VYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~ 122 (248)
++...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999987654
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.29 E-value=3e-05 Score=60.67 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=97.6
Q ss_pred CchHHHHHHHHHHHHcCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARN--------------SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSV 67 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~--------------~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 67 (248)
|++++|...|++..+...... ...|..+-.+|.+.|++++|...+++..+.. +.+...|..+-.+
T Consensus 161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 239 (336)
T 1p5q_A 161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEA 239 (336)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 789999999999887543221 5899999999999999999999999998764 4578899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 039342 68 YCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA-YGLLDEMH 120 (248)
Q Consensus 68 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a-~~~~~~m~ 120 (248)
|...|++++|...|++..+.. +-+...+..+-..+.+.|+.++| ...++.|.
T Consensus 240 ~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 240 HLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998753 22567888999999999999888 45666664
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.29 E-value=3.1e-05 Score=52.36 Aligned_cols=99 Identities=10% Similarity=0.020 Sum_probs=82.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
+...+..+-..+.+.|++++|...|+...+.+ +.+...|..+-.+|.+.|++++|...|++..+.. +.+...+..+-.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34566677788889999999999999987764 4577888889999999999999999999988753 225677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 039342 102 VYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~~~ 122 (248)
+|...|++++|...|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999987654
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.28 E-value=2.4e-05 Score=51.66 Aligned_cols=67 Identities=12% Similarity=-0.009 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 55 DPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 55 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
+.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|+..+++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3455667777777788888888888887776542 225666777777777777777777777776554
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.27 E-value=1.8e-05 Score=59.94 Aligned_cols=189 Identities=11% Similarity=0.052 Sum_probs=126.2
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------------
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAV-------IEAFRQGGRFEEAIKAYVEMEKVRCDPN----------------- 57 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~l-------i~~~~~~~~~~~a~~~~~~m~~~~~~p~----------------- 57 (248)
++.+.|++.|.+..+... -....|+.+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 20 ~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCEE
T ss_pred CCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccccc
Confidence 688999999999987542 246788877 4555555555555554444332 2221
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch-HHhH
Q 039342 58 -----ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI-HQVT 131 (248)
Q Consensus 58 -----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~ 131 (248)
....-.+...+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+...... .|. ..-.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 1233446677888999999999999887653 544455556668889999999999998543322 121 1112
Q ss_pred HHHhcccccccchHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 132 GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG--MRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
...+-..+...|++++|...|++.......|. .......-.++.+.|+.++|...|+++... .|+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 23333347778899999999998875433253 335566777888899999999999998764 454
No 143
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=6.8e-05 Score=50.49 Aligned_cols=100 Identities=12% Similarity=0.027 Sum_probs=84.9
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhH
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN----ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCY 96 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 96 (248)
.+...+..+-..+.+.|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35778888999999999999999999998764 466 6788888899999999999999999987653 2257788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 97 CMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 97 ~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
..+-.++...|++++|...|++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 888999999999999999999887654
No 144
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.26 E-value=0.00014 Score=56.10 Aligned_cols=222 Identities=5% Similarity=-0.114 Sum_probs=145.3
Q ss_pred chHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CC
Q 039342 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG--RFEEAIKAYVEMEKVRCDPNERTLEAVLSVY----CFA---GL 73 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~----~~~---g~ 73 (248)
.-++|+++++.+..... -+...||.==..+...+ +++++++.++.+...+- -+..+|+.--..+ .+. ++
T Consensus 48 ~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCC
Confidence 34688999988877442 24667888777888888 89999999999877642 3344555433333 444 78
Q ss_pred hhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCchHHh-HHHHhcccccc---cchHHH
Q 039342 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD--DAYGLLDEMHTNRISNIHQV-TGQMIKGEFDD---ESNWQM 147 (248)
Q Consensus 74 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~-~~~~l~~~~~~---~~~~~~ 147 (248)
++++.++++.+.+... -+-.+|+---..+.+.+.++ ++++.++++.+........- +...+...... ...++.
T Consensus 126 ~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8899999999887532 26677877777777778877 89999999987764433322 12222211211 112778
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHH-HHHHHHHHHHCC-CCCCcchhhhHHhhhhhhccccchHHHHHHH
Q 039342 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRER-AARVLDEATKRG-LFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225 (248)
Q Consensus 148 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~ 225 (248)
+.+.++......+. |...|+..--.+.+.|+... +.++..++.+.+ ..|. +.....++...+.+.|+.++|.+
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~----s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT----SSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES----CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC----CHHHHHHHHHHHHccCCHHHHHH
Confidence 88888887777655 77888877777777776443 555666554432 1121 22233344466778888899999
Q ss_pred HHHHHHH
Q 039342 226 WLNKMYE 232 (248)
Q Consensus 226 ~~~~m~~ 232 (248)
.++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888876
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=3.8e-05 Score=53.22 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=84.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHH
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 100 (248)
.+...|..+-..+.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356678888889999999999999999987764 3477888889999999999999999999988753 22577888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 039342 101 AVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
.+|...|++++|...|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999886543
No 146
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=4.7e-05 Score=49.94 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=81.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CcC----HhhH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGI--LPS----VMCY 96 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~ 96 (248)
...|..+-..+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4677888888999999999999999987664 45678888889999999999999999998876421 112 6678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 97 CMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 97 ~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
..+...+...|++++|...|++..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 888889999999999999999887754
No 147
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.24 E-value=4.3e-05 Score=50.65 Aligned_cols=94 Identities=7% Similarity=0.003 Sum_probs=78.6
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|++.|++..+... .+...|..+-.+|.+.|++++|++.+++..+.+ +.+...|..+-.+|...|++++|.+.
T Consensus 26 ~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 103 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSKAQRA 103 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 3899999999999877542 468899999999999999999999999987764 45678899999999999999999999
Q ss_pred HHHHHHCCCCcC-HhhHHH
Q 039342 81 FQEIKSSGILPS-VMCYCM 98 (248)
Q Consensus 81 ~~~m~~~~~~p~-~~~~~~ 98 (248)
|++..+. .|+ ...+..
T Consensus 104 ~~~al~l--~P~~~~a~~~ 120 (126)
T 4gco_A 104 YEDALQV--DPSNEEAREG 120 (126)
T ss_dssp HHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHH--CcCCHHHHHH
Confidence 9998875 453 334433
No 148
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=0.00018 Score=57.92 Aligned_cols=190 Identities=6% Similarity=-0.074 Sum_probs=131.2
Q ss_pred CchHHHHHHHHHHHHcCCCC-C---------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH----H
Q 039342 2 GLYKECQAILSRMSESGVAR-N---------------SDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNER----T 60 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~-~---------------~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~----t 60 (248)
|++++|.+.|..+.+..... + ...+..+...|.+.|++++|.+.+...... +-.++.. +
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 97 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL 97 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 78999999999987643221 1 124788999999999999999999887542 1122222 2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH----CCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCchHHhH
Q 039342 61 LEAVLSVYCFAGLVDESKEQFQEIKS----SGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN----RISNIHQVT 131 (248)
Q Consensus 61 ~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~ 131 (248)
.+.+-..+...|+.+.+.++++.... .+..+ -..++..+...|...|++++|..++++.... +-.+....+
T Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 177 (434)
T 4b4t_Q 98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDV 177 (434)
T ss_dssp HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 22333344567889999999887753 23333 2467888999999999999999999987543 223333333
Q ss_pred HHHhcccccccchHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 132 GQMIKGEFDDESNWQMVEYVFDKLNCE----GYGLG--MRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
...+...+...++++.|..+++..... +..|. ...+..+...+...|+++.|...|.+..
T Consensus 178 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 178 HLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333444477889999999998876543 22222 3456677778888999999988887654
No 149
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.22 E-value=0.00082 Score=51.72 Aligned_cols=185 Identities=6% Similarity=-0.086 Sum_probs=136.2
Q ss_pred chHHHHHHHHHHHHcCCCCCHHhHHHHHHHH----Hhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 039342 3 LYKECQAILSRMSESGVARNSDSFNAVIEAF----RQG---GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~----~~~---~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 75 (248)
+++++++.++.+..... .+..+|+.--..+ .+. +++++++++++.+.+.. +-|...|+.---.+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 84 NLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp CHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccC
Confidence 78999999999887543 3566777655555 555 78999999999998765 568888888888888889888
Q ss_pred --HHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCchHHhHHHHhcccccccch-HH
Q 039342 76 --ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR------WDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN-WQ 146 (248)
Q Consensus 76 --~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~------~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 146 (248)
++.+.++.+.+.... |-..|+.--..+.+.+. ++++++.+++..... |............+...|. .+
T Consensus 162 ~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~ 238 (306)
T 3dra_A 162 DAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSIT 238 (306)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGG
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChH
Confidence 999999999876533 67778777666766666 889999999888765 4444433333333333333 44
Q ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 147 MVEYVFDKLNCEG--YGLGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 147 ~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
.+..+...+.+.+ -..+...+..+...+.+.|+.++|.++++.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 239 QLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5556666655443 234778899999999999999999999999875
No 150
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.19 E-value=4.5e-05 Score=52.36 Aligned_cols=96 Identities=6% Similarity=-0.075 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 174 (248)
.+..+-..+.+.|++++|+..|++..+.. |+...+...+..++...|+++.|...|+...+.... +...|..+-.+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 44444455555555555555555554432 333333333333344455555555555555544322 345566677777
Q ss_pred HhcCchHHHHHHHHHHHHC
Q 039342 175 WCLGLRERAARVLDEATKR 193 (248)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~ 193 (248)
...|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776653
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.18 E-value=2.6e-05 Score=54.68 Aligned_cols=122 Identities=11% Similarity=0.053 Sum_probs=60.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH-HHhcCCHHHHH
Q 039342 35 QGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV-YAKSNRWDDAY 113 (248)
Q Consensus 35 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~ 113 (248)
..|++++|...++...+.. +.+...|..+-..|...|++++|...|++..+.. +.+...+..+... +...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~---- 95 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQH---- 95 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTC----
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCc----
Confidence 3445555555555544332 2344455555555555555555555555554331 1133344444444 3344444
Q ss_pred HHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 114 GLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 114 ~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
..+.|...++...+.... +...+..+...+...|++++|...|++..+.
T Consensus 96 ------------------------------~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 ------------------------------MTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ------------------------------chHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 004444444444443221 3455666777777888888888888877664
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.13 E-value=8e-05 Score=49.36 Aligned_cols=100 Identities=13% Similarity=0.028 Sum_probs=76.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCcC----HhhH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG--ILPS----VMCY 96 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~ 96 (248)
...+..+-..+.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|++++|.+.+++..+.. ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3466777788899999999999999987654 3457788889999999999999999998876531 1111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 97 CMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 97 ~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
..+-.++...|++++|++.|++..+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 677777888899999999998876543
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.13 E-value=8.3e-05 Score=53.21 Aligned_cols=99 Identities=11% Similarity=-0.024 Sum_probs=66.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC---C-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC-DP---N-----------ERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p---~-----------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 87 (248)
...+..+-..+.+.|++++|...|++..+..- .| . ...|..+-.+|.+.|++++|...+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566666677777888888888877765321 11 0 256667777777777777777777777654
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 88 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
. +.+...+..+-.+|...|++++|...|++..+.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2 225566777777777777777777777776554
No 154
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.11 E-value=1.3e-05 Score=52.29 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=55.1
Q ss_pred CchHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 039342 2 GLYKECQAILSRMSESGV--ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~--~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 79 (248)
|++++|+..|++..+.+. +.+...|..+-..|.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 567777777777766431 2245567777777777777777777777776553 2345666677777777777777777
Q ss_pred HHHHHHHC
Q 039342 80 QFQEIKSS 87 (248)
Q Consensus 80 ~~~~m~~~ 87 (248)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776543
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.11 E-value=9.7e-05 Score=46.95 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=73.7
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc-CChhHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP--NERTLEAVLSVYCFA-GLVDESK 78 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~-g~~~~a~ 78 (248)
|++++|...|++..+... .+...|..+-..+...|++++|.+.+++..+.. +. +...+..+..++.+. |++++|.
T Consensus 20 ~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~ 97 (112)
T 2kck_A 20 GNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGKEVEAE 97 (112)
T ss_dssp CCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHH
T ss_pred hhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCCHHHHH
Confidence 789999999999877542 467889999999999999999999999998764 23 588899999999999 9999999
Q ss_pred HHHHHHHHCC
Q 039342 79 EQFQEIKSSG 88 (248)
Q Consensus 79 ~~~~~m~~~~ 88 (248)
+.++...+..
T Consensus 98 ~~~~~~~~~~ 107 (112)
T 2kck_A 98 IAEARAKLEH 107 (112)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHHHhhcc
Confidence 9999998763
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.08 E-value=0.00027 Score=45.23 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=73.9
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|.+.|++..+... .+...|..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.
T Consensus 17 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 94 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRT 94 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4889999999999877542 368889999999999999999999999987764 34678889999999999999999999
Q ss_pred HHHHHHCC
Q 039342 81 FQEIKSSG 88 (248)
Q Consensus 81 ~~~m~~~~ 88 (248)
+++..+..
T Consensus 95 ~~~~~~~~ 102 (118)
T 1elw_A 95 YEEGLKHE 102 (118)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHcC
Confidence 99988753
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.07 E-value=0.0001 Score=52.74 Aligned_cols=119 Identities=11% Similarity=0.049 Sum_probs=87.0
Q ss_pred CCchHHHHHHHHHHHHcCCC-CC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVA-RN--------------SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVL 65 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~-~~--------------~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 65 (248)
.|++++|.+.|.+..+.... |+ ...|..+-.+|.+.|++++|...++...+.. +.+...+..+-
T Consensus 51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 129 (198)
T 2fbn_A 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLG 129 (198)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 37899999999998764321 11 2788889999999999999999999997764 45778889999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 039342 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY-GLLDEMHT 121 (248)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~ 121 (248)
.+|...|++++|...|++..+.. +-+...+..+-..+...++.+++. ..+..+..
T Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 130 VANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988653 125667777777777777666665 44554433
No 158
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=6.4e-05 Score=51.19 Aligned_cols=139 Identities=13% Similarity=0.056 Sum_probs=91.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCc-C
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC-DPN----ERTLEAVLSVYCFAGLVDESKEQFQEIKSS----GILP-S 92 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~ 92 (248)
..++..+-..+...|++++|...+++..+..- .++ ..++..+-..+...|++++|.+.+++..+. +-.+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45677777888888999999888888754311 111 146777788888889999998888886542 1111 1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039342 93 VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172 (248)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 172 (248)
..++..+-..+...|++++|...+++..+... ..++ .......+..+..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------------~~~~---------------~~~~~~~~~~la~ 137 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ----------------ELKD---------------RIGEGRACWSLGN 137 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------HTTC---------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----------------Hccc---------------hHhHHHHHHHHHH
Confidence 44677777778888888888888876543210 0000 0011344666777
Q ss_pred HHHhcCchHHHHHHHHHHHH
Q 039342 173 ALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~ 192 (248)
.+...|++++|.+.+++..+
T Consensus 138 ~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 138 AYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 78888888888888887653
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.05 E-value=2.1e-05 Score=59.96 Aligned_cols=179 Identities=7% Similarity=-0.051 Sum_probs=113.7
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|...|.+..+... .+...|..+-..|.+.|++++|.+.+++..+.. +-+...+..+-.+|.+.|++++|...
T Consensus 17 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 94 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIAN 94 (281)
T ss_dssp TTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4899999999999887542 378899999999999999999999999987653 34678888999999999999999999
Q ss_pred HHHHHHCCCCcCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcC
Q 039342 81 FQEIKSSGILPSV-MCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 81 ~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
|++..+.. |+. ..+...+....+. ..+. -+..........+... ...+.. + ..|+++.|.+.++...+.
T Consensus 95 ~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i-~~~l~~-l-~~~~~~~A~~~~~~al~~- 164 (281)
T 2c2l_A 95 LQRAYSLA--KEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESEL-HSYLTR-L-IAAERERELEECQRNHEG- 164 (281)
T ss_dssp HHHHHHHH--HHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHH-HHHHHH-H-HHHHHHHHHTTTSGGGTT-
T ss_pred HHHHHHhC--ccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHH-HHHHHH-H-HHHHHHHHHHHHHhhhcc-
Confidence 99887532 211 1222222222211 1111 1122222333333322 222222 1 146677777766655443
Q ss_pred CCCCHHH-HHHHHHHHHhc-CchHHHHHHHHHHHH
Q 039342 160 YGLGMRF-YNALLEALWCL-GLRERAARVLDEATK 192 (248)
Q Consensus 160 ~~p~~~~-~~~li~~~~~~-g~~~~a~~~~~~m~~ 192 (248)
.|+... ...+-..+.+. +.+++|.++|....+
T Consensus 165 -~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 165 -HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 454433 33343444444 678899999988764
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.05 E-value=0.00011 Score=48.31 Aligned_cols=95 Identities=8% Similarity=-0.041 Sum_probs=78.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVY 103 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~ 103 (248)
.+..+-..+.+.|++++|...|++..+.. +-+...|..+-.++.+.|++++|...|++..+.. | +...+..+-.++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 45556677889999999999999987754 3477888888889999999999999999988753 4 567888888999
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 039342 104 AKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~ 122 (248)
...|++++|+..|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999987654
No 161
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=0.00011 Score=60.54 Aligned_cols=141 Identities=13% Similarity=-0.012 Sum_probs=93.7
Q ss_pred HHHhcCChhHHHHHHHHHHHC---CC---Cc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccc
Q 039342 67 VYCFAGLVDESKEQFQEIKSS---GI---LP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEF 139 (248)
Q Consensus 67 ~~~~~g~~~~a~~~~~~m~~~---~~---~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~ 139 (248)
.+...|++++|..++++..+. -+ .| ...+++.|...|...|++++|+.++++..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------- 380 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------------- 380 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 355788999999988877542 11 12 3467889999999999999999888765421
Q ss_pred cccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH---CCCCCCcchhhhHHhhhhhhcccc
Q 039342 140 DDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK---RGLFPELFRHNKLVWSVDVHRMWE 216 (248)
Q Consensus 140 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~li~~~~~~~~~~ 216 (248)
++...-..-.-...+++.|-..|..+|++++|..++++..+ .-+-||-.. ..-+...+-..+.+
T Consensus 381 ------------~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~-~~~~~~~l~~~~~e 447 (490)
T 3n71_A 381 ------------YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPI-TKDLEAMRMQTEME 447 (490)
T ss_dssp ------------HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH-HHHHHHHHHHHHHH
T ss_pred ------------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHH
Confidence 11111111111345678888889999999999998887542 222233222 22233455577788
Q ss_pred chHHHHHHHHHHHHHHHHHcC
Q 039342 217 GGAYTAISVWLNKMYEMFMMG 237 (248)
Q Consensus 217 ~g~~~~~~~~~~~m~~~~~~~ 237 (248)
.+.+.+++..+..++++-.+.
T Consensus 448 ~~~~~~ae~~~~~~~~~~~~~ 468 (490)
T 3n71_A 448 LRMFRQNEFMYHKMREAALNN 468 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 889999999999998876554
No 162
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.04 E-value=2.2e-05 Score=53.67 Aligned_cols=95 Identities=13% Similarity=-0.024 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEAL 174 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 174 (248)
.+..+-..+.+.|++++|+..|++..... |+...+...+...+...|+++.|...|+........ +...+..+-.++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 33344444444444444444444444332 222222222222233444445555555444443221 345566677777
Q ss_pred HhcCchHHHHHHHHHHHH
Q 039342 175 WCLGLRERAARVLDEATK 192 (248)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~ 192 (248)
...|++++|.+.|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888877654
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.04 E-value=9.6e-05 Score=49.89 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=73.4
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|.+.|++..+... .+...|..+-.++.+.|++++|...|++..+.+ +-+...+..+-.+|...|++++|.+.
T Consensus 31 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 108 (142)
T 2xcb_A 31 AGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLDGAESG 108 (142)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 3899999999999887543 468889999999999999999999999998764 34667788899999999999999999
Q ss_pred HHHHHHC
Q 039342 81 FQEIKSS 87 (248)
Q Consensus 81 ~~~m~~~ 87 (248)
|+...+.
T Consensus 109 ~~~al~~ 115 (142)
T 2xcb_A 109 FYSARAL 115 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.00024 Score=46.61 Aligned_cols=85 Identities=9% Similarity=0.036 Sum_probs=74.0
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|.+.|++..+... .+...|..+-.++.+.|++++|...+++..+.. +-+...|..+-.++...|++++|...
T Consensus 17 ~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~ 94 (126)
T 3upv_A 17 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 94 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3899999999999887542 468899999999999999999999999997764 34578889999999999999999999
Q ss_pred HHHHHHC
Q 039342 81 FQEIKSS 87 (248)
Q Consensus 81 ~~~m~~~ 87 (248)
|++..+.
T Consensus 95 ~~~al~~ 101 (126)
T 3upv_A 95 LDAARTK 101 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.03 E-value=8e-05 Score=50.69 Aligned_cols=146 Identities=9% Similarity=-0.099 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHH
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGIL-PS----VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 133 (248)
.++..+-..+...|++++|...+++..+..-. ++ ..++..+-..+...|++++|...+++..+...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------- 80 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR--------- 80 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------
Confidence 45677777888889999999988887643100 11 24677788888888888888888887653210
Q ss_pred HhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhc
Q 039342 134 MIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHR 213 (248)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 213 (248)
..++ .......+..+-..+...|++++|.+.+++..+..-..+........+..+...
T Consensus 81 -------~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 81 -------QLKD---------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp -------HTTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HhCC---------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 0000 001134566777888889999999998887653211111112223333334477
Q ss_pred cccchHHHHHHHHHHHHHHHHH
Q 039342 214 MWEGGAYTAISVWLNKMYEMFM 235 (248)
Q Consensus 214 ~~~~g~~~~~~~~~~~m~~~~~ 235 (248)
+...|++++|...+++-.+..-
T Consensus 139 ~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHccCHHHHHHHHHHHHHHHH
Confidence 8899999999999998877643
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=4.3e-05 Score=62.83 Aligned_cols=113 Identities=9% Similarity=0.027 Sum_probs=87.5
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|.+.|++..+... .+...|..+-.+|.+.|++++|.+.+++..+.. +-+...|..+-.+|.+.|++++|.+.
T Consensus 19 ~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3789999999999877532 358899999999999999999999999988764 34678888999999999999999999
Q ss_pred HHHHHHCCCCc-CHhhHHHHHHH--HHhcCCHHHHHHHHH
Q 039342 81 FQEIKSSGILP-SVMCYCMLLAV--YAKSNRWDDAYGLLD 117 (248)
Q Consensus 81 ~~~m~~~~~~p-~~~~~~~li~~--~~~~~~~~~a~~~~~ 117 (248)
|++..+.. | +...+..+-.+ +.+.|++++|++.++
T Consensus 97 ~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99987652 3 33455555555 788899999999888
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.00 E-value=0.00031 Score=46.10 Aligned_cols=94 Identities=14% Similarity=0.107 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----HhhHHHH
Q 039342 27 NAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE---RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPS----VMCYCML 99 (248)
Q Consensus 27 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l 99 (248)
..+-..+.+.|++++|.+.|+...+..- .+. ..+..+-.++.+.|++++|...|++..+.. |+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence 3455667788999999999998876531 122 467777888889999999999998887653 32 5567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 100 LAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 100 i~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
-.++...|++++|...|++..+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 888888999999999998887654
No 168
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.00 E-value=9.8e-05 Score=55.92 Aligned_cols=119 Identities=15% Similarity=0.068 Sum_probs=59.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN--ERTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~ 79 (248)
|++++|.++|+.+...+ |+......+-..+.+.+++++|+..|+...+.. .|. ...+..+-.++.+.|++++|.+
T Consensus 116 g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~ 192 (282)
T 4f3v_A 116 GNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAER 192 (282)
T ss_dssp TCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHH
Confidence 55666666666555433 322233333445556666666666665332211 010 1244445555666666666666
Q ss_pred HHHHHHHCCCCcC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 80 QFQEIKSSGILPS--VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 80 ~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
.|++.......|. .......-.++.+.|+.++|...|+++....
T Consensus 193 ~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 193 RLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 6666553322132 2234444455556666666666666665543
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.98 E-value=0.00011 Score=48.18 Aligned_cols=99 Identities=5% Similarity=0.015 Sum_probs=78.8
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHHHHHHHHHhcCCh
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRC--DPN----ERTLEAVLSVYCFAGLV 74 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~t~~~ll~~~~~~g~~ 74 (248)
.|++++|...|.+..+.. +.+...|..+...+...|++++|...+++..+... .++ ..++..+..++.+.|++
T Consensus 17 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 95 (131)
T 1elr_A 17 KKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY 95 (131)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH
Confidence 378999999999987754 34678899999999999999999999999866531 233 77888899999999999
Q ss_pred hHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 75 DESKEQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 75 ~~a~~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
++|.+.|++..+. .|+......+-..
T Consensus 96 ~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 96 KDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 9999999999875 3555555444433
No 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.97 E-value=5e-05 Score=62.43 Aligned_cols=120 Identities=13% Similarity=0.043 Sum_probs=57.5
Q ss_pred CchHHHHHHHHHHHHc-----CC-CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC---C-CHHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSES-----GV-AR-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV---RCD---P-NERTLEAVLSV 67 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~-----g~-~~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~---~~~---p-~~~t~~~ll~~ 67 (248)
|++++|+.++++..+. |. .| ...+++.|...|...|++++|..++++..+- -+. | ...+++.|-..
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 402 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLT 402 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5555666555544321 11 11 2345566666666666666666655554221 111 1 12445555555
Q ss_pred HHhcCChhHHHHHHHHHHH-----CCCC-c-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039342 68 YCFAGLVDESKEQFQEIKS-----SGIL-P-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121 (248)
Q Consensus 68 ~~~~g~~~~a~~~~~~m~~-----~~~~-p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 121 (248)
|...|++++|..++++..+ .|-. | ...+.+.+-.++...+.+++|+.+|.++++
T Consensus 403 ~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 403 NWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655555432 1211 1 123344444455555555555555555543
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.94 E-value=0.00023 Score=47.28 Aligned_cols=99 Identities=11% Similarity=0.006 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHh
Q 039342 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMI 135 (248)
Q Consensus 56 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l 135 (248)
.+...|..+-..+.+.|++++|...|+...+.. +.+...|..+-..+...|++++|...+++..+.. |
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p--------- 74 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--G--------- 74 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T---------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--c---------
Confidence 455666666677777777777777777666542 1245566666666666677776666666554332 1
Q ss_pred cccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 136 KGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
.+...+..+-.++...|++++|...|++..+
T Consensus 75 --------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 75 --------------------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp --------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1345667777778888888888888887654
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.92 E-value=0.00057 Score=44.75 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=70.2
Q ss_pred CCchHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCC
Q 039342 1 GGLYKECQAILSRMSESGVARNS---DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN----ERTLEAVLSVYCFAGL 73 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~---~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~ 73 (248)
.|++++|.+.|+...+.... +. ..+..+-..+.+.|++++|...|+...+.. |+ ...+..+-.++.+.|+
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~ 91 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGK 91 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCC
Confidence 38999999999998875432 23 577888889999999999999999997753 33 5678888899999999
Q ss_pred hhHHHHHHHHHHHC
Q 039342 74 VDESKEQFQEIKSS 87 (248)
Q Consensus 74 ~~~a~~~~~~m~~~ 87 (248)
+++|...|+...+.
T Consensus 92 ~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 92 NTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=0.00044 Score=46.36 Aligned_cols=65 Identities=9% Similarity=-0.065 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPS----VMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 56 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
.+...+..+...+.+.|++++|.+.|++..+. .|+ ...|..+-..|...|++++|+..+++..+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 45667777788888888888888888887764 344 566777777777888888888877776544
No 174
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.89 E-value=0.00034 Score=48.31 Aligned_cols=100 Identities=8% Similarity=-0.051 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhc
Q 039342 57 NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136 (248)
Q Consensus 57 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~ 136 (248)
+...+..+-..+.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|+..|++..+.. |+.......+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 45677888889999999999999999988753 2267889999999999999999999999988765 44433333333
Q ss_pred ccccccchHHHHHHHHHHHHhcC
Q 039342 137 GEFDDESNWQMVEYVFDKLNCEG 159 (248)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~m~~~~ 159 (248)
..+...|+++.|...|+...+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 33667788888888888877653
No 175
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.88 E-value=0.00027 Score=46.75 Aligned_cols=94 Identities=9% Similarity=0.078 Sum_probs=73.7
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhcCCh
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR--CDPN----ERTLEAVLSVYCFAGLV 74 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~t~~~ll~~~~~~g~~ 74 (248)
.|++++|++.|++..+... -+...|+.+-.+|.+.|++++|++.+++..+.+ ..++ ..+|..+-.++...|++
T Consensus 21 ~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~ 99 (127)
T 4gcn_A 21 QKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDL 99 (127)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCH
Confidence 3899999999999887542 368889999999999999999999999986532 2222 24677778889999999
Q ss_pred hHHHHHHHHHHHCCCCcCHhhHH
Q 039342 75 DESKEQFQEIKSSGILPSVMCYC 97 (248)
Q Consensus 75 ~~a~~~~~~m~~~~~~p~~~~~~ 97 (248)
++|.+.|++..+. .|+..+..
T Consensus 100 ~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 100 SLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHHHhh--CcCHHHHH
Confidence 9999999987764 45655443
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.86 E-value=3.6e-05 Score=50.16 Aligned_cols=87 Identities=10% Similarity=-0.010 Sum_probs=64.3
Q ss_pred hcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHH
Q 039342 35 QGGRFEEAIKAYVEMEKVR--CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDA 112 (248)
Q Consensus 35 ~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 112 (248)
..|++++|...|++..+.+ -+-+...+..+-.+|.+.|++++|...|++..+... -+...+..+-.++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 3578888888888887654 123456777888888999999999999998876532 2567788888888999999999
Q ss_pred HHHHHHHHHC
Q 039342 113 YGLLDEMHTN 122 (248)
Q Consensus 113 ~~~~~~m~~~ 122 (248)
+..|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998887654
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.85 E-value=0.00018 Score=47.19 Aligned_cols=85 Identities=7% Similarity=-0.048 Sum_probs=72.7
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|++++|...|++..+... .+...|..+-.++...|++++|...|++..+.. +-+...+..+-.++.+.|++++|...
T Consensus 30 ~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~~~ 107 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALAS 107 (121)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3889999999999987542 368889999999999999999999999987764 34677888999999999999999999
Q ss_pred HHHHHHC
Q 039342 81 FQEIKSS 87 (248)
Q Consensus 81 ~~~m~~~ 87 (248)
+++..+.
T Consensus 108 ~~~al~~ 114 (121)
T 1hxi_A 108 LRAWLLS 114 (121)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 9998764
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.85 E-value=0.00042 Score=56.57 Aligned_cols=121 Identities=8% Similarity=-0.010 Sum_probs=81.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN--------------ERTLEAVLSVYCFAGLVDESKEQFQEIKSSG 88 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 88 (248)
...|..+-..+.+.|++++|...|++..+..-... ...|..+-.+|.+.|++++|...+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45677778888889999999999988866431111 5777888888888888888888888887653
Q ss_pred CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHH
Q 039342 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQ 146 (248)
Q Consensus 89 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (248)
+.+...|..+-.+|...|++++|+..|++..+.. |+.......+...+...++.+
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHH
Confidence 2256778888888888888888888888877543 544433333333233333333
No 179
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.84 E-value=0.0058 Score=47.77 Aligned_cols=226 Identities=9% Similarity=-0.085 Sum_probs=137.5
Q ss_pred chHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-ChhHHHH
Q 039342 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFA-G-LVDESKE 79 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-g-~~~~a~~ 79 (248)
.-++|+++++.+..... -+...|+.-=..+...| ++++++++++.+.... +-+..+|+.--..+.+. + +++++.+
T Consensus 69 ~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34678888888876442 24667777666777777 5999999999998765 45677887776666666 6 8899999
Q ss_pred HHHHHHHCCCCcCHhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCchHH-hHHHHhcccccc----cchHH
Q 039342 80 QFQEIKSSGILPSVMCYCMLLAVYAKSNRWD--------DAYGLLDEMHTNRISNIHQ-VTGQMIKGEFDD----ESNWQ 146 (248)
Q Consensus 80 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~----~~~~~ 146 (248)
+++.+.+... -|-.+|+---..+.+.+.++ ++++.++++.+....-... .+...+...... ...++
T Consensus 147 ~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 147 YIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 9999987532 26667776555555555555 8999999998876433222 222222221221 12357
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCch--------------------HHHHHHHHHHHHCCCCCCcchhhhHH
Q 039342 147 MVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLR--------------------ERAARVLDEATKRGLFPELFRHNKLV 206 (248)
Q Consensus 147 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~g~~p~~~t~~~li 206 (248)
.+.+.++........ |...|+-+--.+.+.|+. ....+...++...+-..+...-+...
T Consensus 226 eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 777777777766544 677777666666665543 22222222222211000001123334
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHH
Q 039342 207 WSVDVHRMWEGGAYTAISVWLNKMYE 232 (248)
Q Consensus 207 ~~~~~~~~~~~g~~~~~~~~~~~m~~ 232 (248)
..++...|.+.|+.++|.++++.+.+
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45555777888888899998888754
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.84 E-value=0.00058 Score=47.01 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=83.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------C----------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-------R----------CDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-------~----------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 85 (248)
+..+...-..+.+.|++++|...|.+..+. . -+.+...|..+-.+|.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777778889999999999999988654 0 12234678888899999999999999999988
Q ss_pred HCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHH
Q 039342 86 SSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129 (248)
Q Consensus 86 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 129 (248)
+.. +.+...|..+-.+|...|++++|...|++..+.. |+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~ 131 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAAA 131 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCCH
Confidence 753 2367789999999999999999999999887664 5544
No 181
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.83 E-value=0.0021 Score=53.01 Aligned_cols=205 Identities=12% Similarity=0.015 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 039342 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI 84 (248)
Q Consensus 5 ~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 84 (248)
+++..+|++..... +.+...|-..+..+.+.|+++.|..++++.... +.+...+. .|+...+.+.. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence 45677888877643 345788988899999999999999999999877 33333322 23332222222 3333
Q ss_pred HHCC---------C---CcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHH--HHhcccccccchHHHHHH
Q 039342 85 KSSG---------I---LPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTG--QMIKGEFDDESNWQMVEY 150 (248)
Q Consensus 85 ~~~~---------~---~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~ 150 (248)
.+.- . ......|-..+....+.+.++.|..+|++. ... ..+..++. +.+. +...++.+.|..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE--~~~~~d~~~ar~ 341 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIE--YYATGSRATPYN 341 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHH--HHHHCCSHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHH--HHHCCChHHHHH
Confidence 3210 0 112355777777777888999999999998 321 12223332 2222 223346899999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHH
Q 039342 151 VFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKM 230 (248)
Q Consensus 151 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m 230 (248)
+|+...+.-. -+...+...++...+.|+.+.|..+|+...+ ...+|...+.--.+.|+.+.+..++++.
T Consensus 342 ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----------~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 342 IFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLEK----------TSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----------BHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9998877532 1344556677777889999999999998621 2344444445455678888888888888
Q ss_pred HHHH
Q 039342 231 YEMF 234 (248)
Q Consensus 231 ~~~~ 234 (248)
.+.-
T Consensus 411 ~~~~ 414 (493)
T 2uy1_A 411 MDAI 414 (493)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7643
No 182
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.79 E-value=0.0017 Score=50.83 Aligned_cols=186 Identities=8% Similarity=-0.056 Sum_probs=128.4
Q ss_pred chHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-C-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh-----
Q 039342 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQG-G-RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD----- 75 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~-~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~----- 75 (248)
+++++++.++.+..... .+..+|+.--..+.+. + ++++++++++.+.+.. +-|...|+.---...+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp CHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred hHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchh
Confidence 58899999999987553 4778888877777776 6 8999999999998664 457778876666665556666
Q ss_pred ---HHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCchHHhHHHHhcccccccch-
Q 039342 76 ---ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR-------WDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN- 144 (248)
Q Consensus 76 ---~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~- 144 (248)
++.+.++++.+.... |-..|+-.-..+.+.++ ++++++.+++..... |........+.+.+...+.
T Consensus 182 ~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCC
Confidence 899999999876433 77788888777777775 688888888887654 5554444333332322221
Q ss_pred -------------------HHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 145 -------------------WQMVEYVFDKLNCEG-----YGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 145 -------------------~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
..........+...+ -.++......+.+.|...|+.++|.++++.+.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 259 LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 122333333332221 1367888899999999999999999999998653
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.79 E-value=0.00037 Score=55.25 Aligned_cols=99 Identities=10% Similarity=0.035 Sum_probs=73.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKV---------------RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSG 88 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 88 (248)
..|..+-..+.+.|++++|.+.|++..+. --+.+...|..+-.+|.+.|++++|.+.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45777778888899999999999887651 112234677777788888888888888888887653
Q ss_pred CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 89 ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 89 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
+.+...|..+-.+|...|++++|+..|++..+..
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 1256677788888888888888888888876553
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.77 E-value=9.4e-05 Score=60.79 Aligned_cols=120 Identities=8% Similarity=-0.014 Sum_probs=88.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCH
Q 039342 30 IEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRW 109 (248)
Q Consensus 30 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 109 (248)
-..+.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|.+.+++..+.. +.+...|..+-.+|.+.|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344567899999999999987763 3458899999999999999999999999998863 22678899999999999999
Q ss_pred HHHHHHHHHHHHCCCCchHHhHHHHhccc--ccccchHHHHHHHHH
Q 039342 110 DDAYGLLDEMHTNRISNIHQVTGQMIKGE--FDDESNWQMVEYVFD 153 (248)
Q Consensus 110 ~~a~~~~~~m~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 153 (248)
++|+..|++..+.. |+.......+... +...+++++|...++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999987754 3332222222221 445677888888777
No 185
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.74 E-value=0.0027 Score=42.52 Aligned_cols=111 Identities=5% Similarity=-0.132 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 039342 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCF----AGLVDESK 78 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~ 78 (248)
+.++|.+.|++..+.|. |+.. +-..|...+.++.|.+.|++..+.| +...+..+-..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 56778888888777663 3333 4455555567777888888776654 45566666666766 67888888
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 039342 79 EQFQEIKSSGILPSVMCYCMLLAVYAK----SNRWDDAYGLLDEMHTNRI 124 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~ 124 (248)
+.|++..+.| +...+..|-..|.. .++.++|...|++-.+.|.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888877764 45566666666666 6777888888877766653
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.72 E-value=0.0007 Score=55.26 Aligned_cols=117 Identities=11% Similarity=0.133 Sum_probs=92.8
Q ss_pred CCchHHHHHHHHHHHHcCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARN--------------SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLS 66 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~--------------~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 66 (248)
.|++++|...|.+..+...... ...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+-.
T Consensus 281 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~ 359 (457)
T 1kt0_A 281 GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGE 359 (457)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 3789999999998876432111 5889999999999999999999999998764 457888999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 039342 67 VYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYG-LLDEMH 120 (248)
Q Consensus 67 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~-~~~~m~ 120 (248)
+|.+.|++++|...|++..+. .| +...+..+-..+.+.++.+++.+ .+..|.
T Consensus 360 a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 360 AQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875 34 55788888888888888877663 445443
No 187
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.70 E-value=0.01 Score=46.08 Aligned_cols=222 Identities=9% Similarity=-0.057 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 039342 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGR----------FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG-- 72 (248)
Q Consensus 5 ~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-- 72 (248)
++|+++++.+..... -+...||.==..+...+. +++++.+++.+.... +-+..+|+.--..+.+.+
T Consensus 47 ~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcc
Confidence 478888888876432 234555553233322222 678888898887654 457788887777777777
Q ss_pred ChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCchHHh-HHH-Hhccccc---------
Q 039342 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR-WDDAYGLLDEMHTNRISNIHQV-TGQ-MIKGEFD--------- 140 (248)
Q Consensus 73 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~-~~~-~l~~~~~--------- 140 (248)
.++++..+++.+.+... -|-.+|+---..+...|. ++++++.++++.+........- +.. ++.....
T Consensus 125 ~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 125 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------C
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 48999999999987642 267788877777778887 6899999999988764332221 112 2222111
Q ss_pred -ccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CchHHHHHHHHHHHHCCCCCCcchhhhHHhh
Q 039342 141 -DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL-----------GLRERAARVLDEATKRGLFPELFRHNKLVWS 208 (248)
Q Consensus 141 -~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 208 (248)
..+.++.+.+.+......... |...|+-+--.+.+. +.++++.+.++++.+. .||. .+..+...
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~ 279 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTII 279 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHH
Confidence 115577788888877766543 666676444444443 4678899999998874 6764 34433333
Q ss_pred hhhhccccchHHHHHHHHHHHHHHH
Q 039342 209 VDVHRMWEGGAYTAISVWLNKMYEM 233 (248)
Q Consensus 209 ~~~~~~~~~g~~~~~~~~~~~m~~~ 233 (248)
++..+....|..+++..+++++++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHHh
Confidence 3334444566777788888888754
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.68 E-value=0.00026 Score=55.36 Aligned_cols=130 Identities=8% Similarity=-0.003 Sum_probs=71.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------------------HHHHHHHHHHhcCChhHHHHHHHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNER------------------TLEAVLSVYCFAGLVDESKEQFQEI 84 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------------------t~~~ll~~~~~~g~~~~a~~~~~~m 84 (248)
...|..+-..+.+.|++++|...|++..+. .|+.. .|..+-.+|.+.|++++|...+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345666677777888999999988887654 34433 6777777888888888888888887
Q ss_pred HHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhccc-ccccchHHHHHHHHHHHHh
Q 039342 85 KSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE-FDDESNWQMVEYVFDKLNC 157 (248)
Q Consensus 85 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~ 157 (248)
.+.. +.+...|..+-.+|...|++++|+..|++..+. .|+.......+... ....+..+.+..+|..|..
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7642 225677888888888888888888888876543 24443333322221 2233344555555555543
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.55 E-value=0.0015 Score=44.89 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=73.6
Q ss_pred CCchHHHHHHHHHHHHc--------C---------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 039342 1 GGLYKECQAILSRMSES--------G---------VARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEA 63 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~--------g---------~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 63 (248)
.|++++|.+.|.+..+. . -+.+...|..+-.+|.+.|++++|...++...+.. +.+...|..
T Consensus 24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~ 102 (162)
T 3rkv_A 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFR 102 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHH
Confidence 37899999999987653 0 01234688889999999999999999999998764 456788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCH
Q 039342 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSV 93 (248)
Q Consensus 64 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 93 (248)
+-.+|...|++++|...|++..+. .|+.
T Consensus 103 ~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 103 RAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 999999999999999999998875 4544
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00074 Score=42.82 Aligned_cols=90 Identities=9% Similarity=-0.016 Sum_probs=63.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-------H
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPS-------V 93 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~ 93 (248)
++...|..+-..+.+.|++++|.+.|++..+.. +.+...|..+-.++.+.|++++|.+.+++..+. .|+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHH
Confidence 356677788888889999999999998887653 346778888888899999999999999888765 344 3
Q ss_pred hhHHHHHHHHHhcCCHHHHH
Q 039342 94 MCYCMLLAVYAKSNRWDDAY 113 (248)
Q Consensus 94 ~~~~~li~~~~~~~~~~~a~ 113 (248)
..+..+-.++...|+.+.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHHhHhhhH
Confidence 33444444444444444433
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.52 E-value=0.00047 Score=53.90 Aligned_cols=117 Identities=11% Similarity=0.078 Sum_probs=70.3
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHH------------------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSD------------------SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLE 62 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~------------------~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 62 (248)
.|++++|...|.+..+. .|+.. .|..+-.+|.+.|++++|...+++..+.. +-+...|.
T Consensus 192 ~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~ 268 (338)
T 2if4_A 192 EEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALF 268 (338)
T ss_dssp SSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 37899999999987653 24432 78889999999999999999999987754 34678899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 039342 63 AVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAV-YAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 63 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~ 122 (248)
.+-.+|...|++++|...|++..+. .| +...+..+... ....+..+.+...|..|...
T Consensus 269 ~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 269 RRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999998754 34 34445554444 23445677788888877644
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.50 E-value=0.0015 Score=42.03 Aligned_cols=79 Identities=9% Similarity=0.005 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039342 6 ECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 6 ~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 85 (248)
.|.+.|++..+... .+...|..+-..+...|++++|...|++..+.. +.+...|..+-.+|.+.|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555544321 245555555566666666666666666655432 2334455555555666666666666655554
Q ss_pred H
Q 039342 86 S 86 (248)
Q Consensus 86 ~ 86 (248)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 193
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.47 E-value=0.023 Score=44.11 Aligned_cols=181 Identities=8% Similarity=-0.043 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHH
Q 039342 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGG--RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL-VDESKEQ 80 (248)
Q Consensus 4 ~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~~ 80 (248)
+++++..++.+..... .+..+|+.=-..+.+.+ ++++++++++.+.+.. +-|...|+.---.+.+.|. ++++.+.
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 5778888888876543 47888888777777777 4899999999998776 4677888877777778888 5899999
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCchHHhHHHHhccccccc----
Q 039342 81 FQEIKSSGILPSVMCYCMLLAVYAKS--------------NRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDE---- 142 (248)
Q Consensus 81 ~~~m~~~~~~p~~~~~~~li~~~~~~--------------~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~---- 142 (248)
++.+.+..+. |...|+..-..+.+. +.++++++.+.+..... |+.........+.+...
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCcc
Confidence 9999876533 666777665555544 45788899988887654 55544433222222222
Q ss_pred -------chHHHHHHHHHHHHhcCCCCCHHHHH--HH---HHHHHhcCchHHHHHHHHHHHH
Q 039342 143 -------SNWQMVEYVFDKLNCEGYGLGMRFYN--AL---LEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 143 -------~~~~~a~~~~~~m~~~~~~p~~~~~~--~l---i~~~~~~g~~~~a~~~~~~m~~ 192 (248)
+.++.+.+.++++.+.. ||. .|+ .+ +......|..+++...+.++.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~--pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELE--PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhC--ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 45677788888887754 432 233 22 2222245667778888887765
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.46 E-value=0.0017 Score=51.46 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC--------------CCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSS--------------GILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--------------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 121 (248)
..+..+-..+.+.|++++|.+.|++..+. ...| +..+|..+-.+|.+.|++++|+..+++..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34666777888899999999988887651 0122 345566666666666666666666666554
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.46 E-value=0.0051 Score=42.25 Aligned_cols=99 Identities=7% Similarity=-0.056 Sum_probs=76.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDP------NE-----RTLEAVLSVYCFAGLVDESKEQFQEIKSS---- 87 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p------~~-----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---- 87 (248)
...+...-..+.+.|++++|.+.|++..+..-.. +. ..|+.+-.++.+.|++++|...+++..+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3455666677888999999999999986643210 23 38888999999999999999999988764
Q ss_pred -CCCcC-HhhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 039342 88 -GILPS-VMCY----CMLLAVYAKSNRWDDAYGLLDEMHT 121 (248)
Q Consensus 88 -~~~p~-~~~~----~~li~~~~~~~~~~~a~~~~~~m~~ 121 (248)
.+.|+ ...| ...-.++...|++++|+..|++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 12464 4567 8888899999999999999998754
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.40 E-value=0.0041 Score=37.61 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=53.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLA 101 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 101 (248)
+...|..+-..+.+.|++++|...+++..+.. +.+...+..+-.++.+.|++++|...|++..+.. +.+...+..+-.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34566677777777888888888887776543 3356677777777788888888888887776542 113444544444
Q ss_pred HHH
Q 039342 102 VYA 104 (248)
Q Consensus 102 ~~~ 104 (248)
.+.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.39 E-value=0.002 Score=41.31 Aligned_cols=80 Identities=8% Similarity=-0.085 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 41 EAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMH 120 (248)
Q Consensus 41 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 120 (248)
.+.+.|++..+.. +.+...+..+-..|.+.|++++|...|++..+.. +.+...|..+-.+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777766543 3567888889999999999999999999988753 2256788889999999999999999999876
Q ss_pred HC
Q 039342 121 TN 122 (248)
Q Consensus 121 ~~ 122 (248)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.30 E-value=0.016 Score=38.72 Aligned_cols=78 Identities=12% Similarity=-0.028 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh----cCCHHHHH
Q 039342 38 RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAK----SNRWDDAY 113 (248)
Q Consensus 38 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~ 113 (248)
++++|.+.|++..+.| .|+.. +-..|...+.+++|.+.|++..+.| +...+..|-..|.. .++.++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 23333 4444445555666666666665553 34455555555554 45555666
Q ss_pred HHHHHHHHCC
Q 039342 114 GLLDEMHTNR 123 (248)
Q Consensus 114 ~~~~~m~~~~ 123 (248)
..|++-.+.|
T Consensus 82 ~~~~~Aa~~g 91 (138)
T 1klx_A 82 QYYSKACGLN 91 (138)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHcCC
Confidence 6555554443
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.27 E-value=0.0048 Score=42.38 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=68.6
Q ss_pred CchHHHHHHHHHHHHcCCCC------C-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCH-HHH---
Q 039342 2 GLYKECQAILSRMSESGVAR------N-----SDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-----RCDPNE-RTL--- 61 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~------~-----~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~-~t~--- 61 (248)
|++++|.+.|++..+..... + ...|+.+-.++.+.|++++|+..+++..+. .+.|+. ..|
T Consensus 25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~ 104 (159)
T 2hr2_A 25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA 104 (159)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHH
Confidence 89999999999887643220 2 238999999999999999999999998764 125643 567
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHHHH
Q 039342 62 -EAVLSVYCFAGLVDESKEQFQEIKS 86 (248)
Q Consensus 62 -~~ll~~~~~~g~~~~a~~~~~~m~~ 86 (248)
...-.++...|++++|...|++..+
T Consensus 105 ~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 105 VYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7888899999999999999999865
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.14 E-value=0.0048 Score=38.58 Aligned_cols=62 Identities=10% Similarity=0.038 Sum_probs=30.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 85 (248)
...|..+-..|.+.|++++|...|++..+.. +-+...|..+-.+|.+.|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555555554432 1223344455555555555555555555443
No 201
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.14 E-value=0.0055 Score=49.57 Aligned_cols=87 Identities=8% Similarity=-0.046 Sum_probs=66.6
Q ss_pred hcCCHHHHHHHHHHHHH---cCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCcC-HhhHHHHH
Q 039342 35 QGGRFEEAIKAYVEMEK---VRCDPN----ERTLEAVLSVYCFAGLVDESKEQFQEIKSS-----G-ILPS-VMCYCMLL 100 (248)
Q Consensus 35 ~~~~~~~a~~~~~~m~~---~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~li 100 (248)
..|++++|+.++++..+ .-+.|+ ..+++.+..+|...|++++|..++++..+. | -.|+ ..+++.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35788999999988744 223333 377889999999999999999999887642 2 2343 46799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 039342 101 AVYAKSNRWDDAYGLLDEMHT 121 (248)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~m~~ 121 (248)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999987643
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.14 E-value=0.0017 Score=52.56 Aligned_cols=85 Identities=11% Similarity=-0.061 Sum_probs=67.0
Q ss_pred CchHHHHHHHHHHHHc---CCC---C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSES---GVA---R-NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-----R-CDPN-ERTLEAVLSV 67 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~---g~~---~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~-~~t~~~ll~~ 67 (248)
|++++|+.++++..+. -.. | ...+++.|..+|...|++++|..++++..+- | -.|+ ..+|+.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 7889999999876542 112 2 3568999999999999999999999987432 2 1233 3778999999
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 039342 68 YCFAGLVDESKEQFQEIKS 86 (248)
Q Consensus 68 ~~~~g~~~~a~~~~~~m~~ 86 (248)
|...|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999988754
No 203
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.13 E-value=0.033 Score=45.84 Aligned_cols=172 Identities=10% Similarity=0.066 Sum_probs=106.4
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR---------CDP---NERTLEAVLSVY 68 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~p---~~~t~~~ll~~~ 68 (248)
.|++++|.++|++.... +.+...|. .|+...+.++. ++.+.+.- ..+ ....|...+...
T Consensus 226 ~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296 (493)
T ss_dssp TTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH
Confidence 37899999999999876 33433333 22222122222 22222110 011 124566677777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCchHH-hHHHHhcccccccchH
Q 039342 69 CFAGLVDESKEQFQEIKSSGILPSVMCYC--MLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ-VTGQMIKGEFDDESNW 145 (248)
Q Consensus 69 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~ 145 (248)
.+.+.++.|..+|+.. +.. .++...|- +.+.... .++.+.|..+|+...+.. |+.. .+...+. .....|+.
T Consensus 297 ~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid-~e~~~~~~ 370 (493)
T 2uy1_A 297 LKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFL-FLLRIGDE 370 (493)
T ss_dssp HHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHH-HHHHHTCH
T ss_pred HHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHH-HHHHcCCH
Confidence 7888999999999998 321 12333443 3333222 336999999999987753 3322 2222332 23456778
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 039342 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 146 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
+.+..+|+... -....|...++.-...|+.+.+.+++++..+
T Consensus 371 ~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999862 2577788888888888999999999888763
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.08 E-value=0.0059 Score=38.17 Aligned_cols=66 Identities=18% Similarity=0.084 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 56 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
-+...+..+-.+|.+.|++++|...|++..+... .+...|..+-.+|...|++++|...|++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567888899999999999999999999887532 25678999999999999999999999987643
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.06 E-value=0.0058 Score=49.39 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=66.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCc-CHh
Q 039342 29 VIEAFRQGGRFEEAIKAYVEMEKV---RCDPN----ERTLEAVLSVYCFAGLVDESKEQFQEIKSS-----G-ILP-SVM 94 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~m~~~---~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~ 94 (248)
.+..+.+.|++++|.+++++..+. -+.|+ ..+++.+..+|...|++++|..++++..+. | -.| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355566778888888888887543 12232 367788888888888888888888877532 2 223 346
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEMH 120 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m~ 120 (248)
+++.|-..|...|++++|+.++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 78888888888888888888888754
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.88 E-value=0.015 Score=46.99 Aligned_cols=97 Identities=9% Similarity=-0.119 Sum_probs=60.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC--C-CCc----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcc
Q 039342 65 LSVYCFAGLVDESKEQFQEIKSS--G-ILP----SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKG 137 (248)
Q Consensus 65 l~~~~~~g~~~~a~~~~~~m~~~--~-~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~ 137 (248)
+..+.+.|++++|..++++..+. . +.| ...+++.+..+|...|++++|+.++++..+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i--------------- 358 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP--------------- 358 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---------------
Confidence 44455667777777777766532 1 111 2346677777777777777777776654321
Q ss_pred cccccchHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 138 EFDDESNWQMVEYVFDKLNCEGYGL-GMRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 138 ~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
++...-. -.| ...+++.|-..|...|++++|..++++..
T Consensus 359 --------------~~~~lg~-~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 359 --------------YRIFFPG-SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp --------------HHHHSCS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHcCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1111001 122 34568888899999999999999998765
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.80 E-value=0.008 Score=41.21 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 039342 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRF----------EEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 72 (248)
.+++|.+.++...+... .+...|+.+-.++...+++ ++|+..|++..+.+ +-+...|..+-.+|...|
T Consensus 17 ~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence 35566666666554332 2455666555555555543 35555555554432 123445555555555443
Q ss_pred -----------ChhHHHHHHHHHHH
Q 039342 73 -----------LVDESKEQFQEIKS 86 (248)
Q Consensus 73 -----------~~~~a~~~~~~m~~ 86 (248)
++++|.+.|++..+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH
Confidence 45555555555544
No 208
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.79 E-value=0.0058 Score=53.22 Aligned_cols=133 Identities=13% Similarity=0.143 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYA 104 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 104 (248)
....++..+.+.|.++.|+++.+. |. .-.......|+++.|.++.+.+ .+...|..+-..+.
T Consensus 631 ~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al 692 (814)
T 3mkq_A 631 SLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHH
Confidence 337777778888888888776532 11 1134456779999998886443 36789999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHH
Q 039342 105 KSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAA 184 (248)
Q Consensus 105 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 184 (248)
+.++++.|.+.|.++.+.. .+..- +...++.+....+-+.....|. ++....+|.+.|++++|.
T Consensus 693 ~~~~~~~A~~~y~~~~d~~---------~l~~l-~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~ 756 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNAHDLE---------SLFLL-HSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAK 756 (814)
T ss_dssp HTTCHHHHHHHHHHHTCHH---------HHHHH-HHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHccChh---------hhHHH-HHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHH
Confidence 9999999999999874321 11111 1223444555555554444432 455666677788888888
Q ss_pred HHHHHHH
Q 039342 185 RVLDEAT 191 (248)
Q Consensus 185 ~~~~~m~ 191 (248)
+++.++.
T Consensus 757 ~~~~~~~ 763 (814)
T 3mkq_A 757 DLLIKSQ 763 (814)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 8877654
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.75 E-value=0.011 Score=35.63 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 58 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
...+..+-..+.+.|++++|...|++..+.. +.+...+..+-..+.+.|++++|...|++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4567778888899999999999999987653 2256788888889999999999999999887654
No 210
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.014 Score=36.58 Aligned_cols=67 Identities=9% Similarity=0.046 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 56 PNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 56 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
++...+..+-..+.+.|++++|.+.|++..+.. +.+...+..+-.++.+.|++++|+..+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 345667778888889999999999998887653 2266778888888999999999999998887654
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.51 E-value=0.21 Score=41.84 Aligned_cols=170 Identities=8% Similarity=-0.086 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 039342 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGGR----------FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG-- 72 (248)
Q Consensus 5 ~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-- 72 (248)
++|++.++.+.+... -+...|+.-=..+.+.|+ ++++++.++.+.+.. +-+..+|+.--..+.+.+
T Consensus 46 eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 456666666655332 234555554444444444 777777777776654 345667777666677777
Q ss_pred ChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCchHHhHHH--Hh-ccccc--------
Q 039342 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN-RWDDAYGLLDEMHTNRISNIHQVTGQ--MI-KGEFD-------- 140 (248)
Q Consensus 73 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~--~l-~~~~~-------- 140 (248)
+++++.+.++++.+.... +-.+|+---..+.+.| ..+++++.++++.+.... +...|+. .+ .....
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 557788888777765322 5666776666666667 677777777777655422 1222221 11 11000
Q ss_pred --ccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCc
Q 039342 141 --DESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGL 179 (248)
Q Consensus 141 --~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 179 (248)
..+.++++.+.++........ |...|+..--.+.+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred cccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 124566666666665554332 45556555555544444
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.45 E-value=0.014 Score=39.97 Aligned_cols=98 Identities=12% Similarity=0.007 Sum_probs=70.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHHHCCCCc-CHhhHHHHHHH
Q 039342 34 RQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV----------DESKEQFQEIKSSGILP-SVMCYCMLLAV 102 (248)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~----------~~a~~~~~~m~~~~~~p-~~~~~~~li~~ 102 (248)
.+.+.+++|.+.++...+.. +-+...|..+-.++.+.+++ ++|...|++..+. .| +...|..+-.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 45567888888888887664 45778888777787777664 5888888888775 34 56678888888
Q ss_pred HHhcC-----------CHHHHHHHHHHHHHCCCCchHHhHHHHhc
Q 039342 103 YAKSN-----------RWDDAYGLLDEMHTNRISNIHQVTGQMIK 136 (248)
Q Consensus 103 ~~~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~~l~ 136 (248)
|...| ++++|+..|++..+.. |+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 88764 6778888887776553 66665555444
No 213
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.13 Score=35.81 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=46.6
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|+++.|.++.+++ -+...|..|-......|+++-|.+.|....+ +..+.-.|.-.|+.++..++-
T Consensus 19 g~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 19 GNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp TCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 5555555555444 2455555555555556666555555555432 333444444445554444443
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 117 (248)
+.-...| -++.-...+.-.|+++++.++|.
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 3333322 23333444445555555555554
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.34 E-value=0.19 Score=39.53 Aligned_cols=143 Identities=8% Similarity=0.002 Sum_probs=82.9
Q ss_pred CCCCHHhHHHHHHHHHh--cC---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh---cC--C---hhHHHHHHHHH
Q 039342 19 VARNSDSFNAVIEAFRQ--GG---RFEEAIKAYVEMEKVRCDPN-ERTLEAVLSVYCF---AG--L---VDESKEQFQEI 84 (248)
Q Consensus 19 ~~~~~~~y~~li~~~~~--~~---~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~---~g--~---~~~a~~~~~~m 84 (248)
.+.+...|...+++... .+ +..+|..+|++..+. .|+ ...|..+.-+|.. .+ . .......++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 45678888888876553 23 347788888887765 454 2344333333321 11 1 11111122221
Q ss_pred HHC-CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCC
Q 039342 85 KSS-GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG 163 (248)
Q Consensus 85 ~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 163 (248)
... .-..+..+|..+-..+...|++++|...+++....+ |+...+ .++...+...|+++.|.+.+++.... .|.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~-~llG~~~~~~G~~~eA~e~~~~AlrL--~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNY-VLLGKVYEMKGMNREAADAYLTAFNL--RPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHH--SCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 111 123467778777777777788999998888888776 543332 33333355678888888888776665 355
Q ss_pred HHHHH
Q 039342 164 MRFYN 168 (248)
Q Consensus 164 ~~~~~ 168 (248)
..||.
T Consensus 343 ~~t~~ 347 (372)
T 3ly7_A 343 ANTLY 347 (372)
T ss_dssp HHHHH
T ss_pred cChHH
Confidence 55654
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.27 E-value=0.042 Score=33.71 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=36.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 039342 31 EAFRQGGRFEEAIKAYVEMEKVRCDPNER-TLEAVLSVYCFAGLVDESKEQFQEIKSS 87 (248)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 87 (248)
..+.+.|++++|.+.+++..+.. +.+.. .+..+-.+|.+.|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34556677777777777765543 23445 6666666777777777777777776654
No 216
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.27 E-value=0.39 Score=40.27 Aligned_cols=151 Identities=9% Similarity=-0.067 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhc
Q 039342 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGL----------VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS 106 (248)
Q Consensus 37 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 106 (248)
..-++|++.++++.+.+ +-+...|+.-=.++.+.|+ ++++.+.++.+.+.... +..+|+.--..+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34578899999997764 2344566655455555555 89999999999875422 667888888888888
Q ss_pred C--CHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccc-hHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc------
Q 039342 107 N--RWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDES-NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCL------ 177 (248)
Q Consensus 107 ~--~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~------ 177 (248)
+ +++++++.++++.+....-.. .|+.--.. ....+ .++++.+.++.+.+..+. +...|+..-..+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~-aW~~R~~~-l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFH-CWDYRRFV-AAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHH-HHHHHHHH-HHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhhcccccc-HHHHHHHH-HHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 8 779999999999887643222 22221111 22233 678888888888776655 677787766666653
Q ss_pred --------CchHHHHHHHHHHHH
Q 039342 178 --------GLRERAARVLDEATK 192 (248)
Q Consensus 178 --------g~~~~a~~~~~~m~~ 192 (248)
+.++++.+.+++...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 567888888887765
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.11 E-value=0.085 Score=35.77 Aligned_cols=80 Identities=4% Similarity=-0.078 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHH
Q 039342 5 KECQAILSRMSESGVARNSDSFNAVIEAFRQGG---RFEEAIKAYVEMEKVRCDP--NERTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 5 ~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~ 79 (248)
..+++-|.+..+.|. ++..+.-.+-.++++.+ +.+++..+|++..+.+ .| +...+=.+--+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444444444333 44555555555555555 4445555555554443 12 12222233334455555555555
Q ss_pred HHHHHHH
Q 039342 80 QFQEIKS 86 (248)
Q Consensus 80 ~~~~m~~ 86 (248)
.++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555554
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.09 E-value=0.064 Score=46.66 Aligned_cols=104 Identities=13% Similarity=-0.015 Sum_probs=64.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHH
Q 039342 31 EAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWD 110 (248)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 110 (248)
......|+++.|+++.+.+ .+...|..+-..+.+.++++.|.+.|..+.+ |..+...|...++.+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKE 724 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHH
T ss_pred ehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHH
Confidence 3456678888888876543 4667888888888888888888888887653 334455555566666
Q ss_pred HHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHH
Q 039342 111 DAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLN 156 (248)
Q Consensus 111 ~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 156 (248)
...++-+.....|.. ...+.. +...|++++|.+++.++.
T Consensus 725 ~~~~~~~~a~~~~~~--~~A~~~-----~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 725 GLVTLAKDAETTGKF--NLAFNA-----YWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHHHTTCH--HHHHHH-----HHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCch--HHHHHH-----HHHcCCHHHHHHHHHHcC
Confidence 665555555554421 111111 223456666666665544
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.93 E-value=0.2 Score=33.28 Aligned_cols=66 Identities=18% Similarity=0.100 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRIS 125 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 125 (248)
..+...++.....|+-|.-.+++..+.. +.+|++...-.+-.+|.+-|+..+|.+++.+.-+.|++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3445555566666666666666655432 22445555555666666666666666666666555543
No 220
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.67 E-value=0.19 Score=31.24 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 38 RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 38 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
|.-++.+-++.+....+.|++.+..+.+++|.|.+++..|.++|+-.+.+ +.+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 55567777777777888888888888888888888888888888888743 12234457666543
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.64 E-value=0.18 Score=30.69 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=47.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVM-CYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 64 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
....+.+.|++++|.+.|++..+.. +.+.. .+..+-.+|...|++++|...|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456778899999999999988753 22456 78888889999999999999999987664
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.40 E-value=0.23 Score=37.66 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC
Q 039342 59 RTLEAVLSVYCFA-----GLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKS-NRWDDAYGLLDEMHTNRIS 125 (248)
Q Consensus 59 ~t~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~ 125 (248)
..|..+...|.+. |+.++|.+.|++..+.+-.-+..++...-..+++. |+.+++.+.+++-......
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3444444445442 55555555555554432110234444444444442 5555555555555544433
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.28 E-value=0.23 Score=31.04 Aligned_cols=64 Identities=9% Similarity=-0.050 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039342 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSS------GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121 (248)
Q Consensus 58 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 121 (248)
..-+-.+-..+.+.|+++.|...|+...+. .-.+....+..+-.++.+.|+++.|...+++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 333444444555555555555555444321 0112344555555555555555555555555543
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.27 E-value=0.23 Score=31.02 Aligned_cols=71 Identities=6% Similarity=-0.089 Sum_probs=57.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR------CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV 93 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 93 (248)
.+...+-.|-..+.+.+++..|...|+...+.- -.+....+..+-.+|.+.|+++.|...+++..+. .|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 466677788899999999999999998875431 2355678899999999999999999999998864 4543
No 225
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.21 E-value=0.15 Score=40.49 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCchHHh
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT-----NRISNIHQV 130 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~ 130 (248)
....++.++...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|++..+ -|+.|...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556677777788888877777766432 23666788888888888888888888777643 377775554
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.04 E-value=0.31 Score=29.86 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=38.3
Q ss_pred CCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 039342 21 RNSDSFNAVIEAFRQGGR---FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 87 (248)
.++..+..+-.++...++ .++|..++++..+.. +-+......+-..+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555555543333 566666666665543 234455555566666667777777777666654
No 227
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.88 E-value=0.25 Score=38.86 Aligned_cols=77 Identities=14% Similarity=-0.024 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHH
Q 039342 54 CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQ 133 (248)
Q Consensus 54 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 133 (248)
-+.+..+|..+-..+...|++++|...+++..+.+ |+...|..+-..+.-.|++++|.+.|++....+ |...++..
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~~ 348 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLYW 348 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHHH
Confidence 46788899888777777899999999999998875 788888888888899999999999999877654 55555544
Q ss_pred H
Q 039342 134 M 134 (248)
Q Consensus 134 ~ 134 (248)
.
T Consensus 349 ~ 349 (372)
T 3ly7_A 349 I 349 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 228
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.84 E-value=0.47 Score=31.25 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039342 76 ESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121 (248)
Q Consensus 76 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 121 (248)
+..+-++.+....+.|++.+..+-+++|-+.+++..|.++|+-.+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555555554443
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.70 E-value=0.61 Score=31.52 Aligned_cols=104 Identities=10% Similarity=0.090 Sum_probs=69.5
Q ss_pred CCHHhHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCH-HHHHHHHHH------HHhcCChhHHHHHHHHHHHC
Q 039342 21 RNSDSFNAVIEAFRQGGRF------EEAIKAYVEMEKVRCDPNE-RTLEAVLSV------YCFAGLVDESKEQFQEIKSS 87 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~-~t~~~ll~~------~~~~g~~~~a~~~~~~m~~~ 87 (248)
-|..+|-..+...-+.|++ +...++|++... .++|+. ..|...|.. +-..++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4677888888888888888 777788887755 355542 111121211 12347888999999888654
Q ss_pred CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 039342 88 GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISN 126 (248)
Q Consensus 88 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 126 (248)
.-.- ...|-.--..=.+.|+++.|.+++.+-...+.+|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2222 6666666666678899999999998887766444
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.57 E-value=0.43 Score=29.22 Aligned_cols=67 Identities=12% Similarity=0.063 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 55 DPNERTLEAVLSVYCFAGL---VDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 55 ~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
+.|...+..+-.++...++ .++|..++++..+. .| +......+-..+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566777777777765544 78999999998875 34 56677777888889999999999999998765
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.53 E-value=0.63 Score=30.94 Aligned_cols=137 Identities=8% Similarity=-0.051 Sum_probs=83.4
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
|.+++..++..+...+ .+..-||=+|......-+-+...++++..-+ -.|. ..+|++....+.+
T Consensus 21 G~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C~ 84 (172)
T 1wy6_A 21 GYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVECG 84 (172)
T ss_dssp TCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHHH
T ss_pred hhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHHH
Confidence 4555555555555431 2444555555555555555555555444421 1111 1234444443333
Q ss_pred HHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCC
Q 039342 82 QEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYG 161 (248)
Q Consensus 82 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 161 (248)
-.+- .+....+.-++.....|+-|+-.+++.++.. +.+|.......+-.+ |.+-|+..++.+++.+..+.|++
T Consensus 85 ~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~A-y~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 85 VINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANA-LRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHH-HHHhcchhhHHHHHHHHHHhhhH
Confidence 2221 2456677888899999999999999998643 334555555555555 89999999999999999999875
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.50 E-value=1.1 Score=33.87 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHCCCCcC---HhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCC--chHHhHHHHhcccccccchH
Q 039342 76 ESKEQFQEIKSSGILPS---VMCYCMLLAVYAKS-----NRWDDAYGLLDEMHTNRIS--NIHQVTGQMIKGEFDDESNW 145 (248)
Q Consensus 76 ~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~--~~~~~~~~~l~~~~~~~~~~ 145 (248)
.|...+++..+. .|+ ...|..+-..|.+. |+.++|.+.|++-.+.+-. ++...+ .-...+...++.
T Consensus 181 ~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~--YA~~l~~~~gd~ 256 (301)
T 3u64_A 181 AAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHIT--YADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHH--HHHHTTTTTTCH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHH--HHHHHHHhcCCH
Confidence 456666666653 354 56788888888884 8999999999998776521 333322 222324445888
Q ss_pred HHHHHHHHHHHhcCCC--CCHHHHHHHHH
Q 039342 146 QMVEYVFDKLNCEGYG--LGMRFYNALLE 172 (248)
Q Consensus 146 ~~a~~~~~~m~~~~~~--p~~~~~~~li~ 172 (248)
+.+.+.+++....... |+....|.+-+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 9999999998888776 77665555544
No 233
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.46 E-value=0.71 Score=31.26 Aligned_cols=83 Identities=7% Similarity=-0.010 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCc--CHhhHHHHHHHHHhcCCHHHHH
Q 039342 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG---LVDESKEQFQEIKSSGILP--SVMCYCMLLAVYAKSNRWDDAY 113 (248)
Q Consensus 39 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~ 113 (248)
...+.+-|.+..+.|. ++..+--.+-.++++.+ +++++..++++..+.. .| ....+-.+--+|.+.+++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455566666555554 77778778888888888 6678899998887654 24 2344445556678899999999
Q ss_pred HHHHHHHHCC
Q 039342 114 GLLDEMHTNR 123 (248)
Q Consensus 114 ~~~~~m~~~~ 123 (248)
+.++.+.+..
T Consensus 92 ~y~~~lL~ie 101 (152)
T 1pc2_A 92 KYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999887653
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.7 Score=32.16 Aligned_cols=102 Identities=7% Similarity=0.062 Sum_probs=61.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchH
Q 039342 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNW 145 (248)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (248)
......|+++.|.++.+++ -+...|..|-....+.|+++-|.+.|.+..+-+ .. .++ +...|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~----~L---~~L---y~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSFD----KL---SFL---YLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH----HH---HHH---HHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH----HH---HHH---HHHhCCH
Confidence 4455677788877776665 256678888888888888888888877653221 11 111 2223333
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 039342 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE 189 (248)
Q Consensus 146 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 189 (248)
+....+-+.-...| -++.....+.-.|+++++.++|.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444433333332 256677777778888888888765
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.62 E-value=0.76 Score=28.60 Aligned_cols=69 Identities=14% Similarity=0.036 Sum_probs=52.4
Q ss_pred ccccccc-hHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHH
Q 039342 137 GEFDDES-NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206 (248)
Q Consensus 137 ~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 206 (248)
.++.+.. +.-.+.+-++.+......|++....+.+++|-+.+++..|..+|+-.+.+- .+....|..++
T Consensus 17 ~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 17 TYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 3355554 555666777777788999999999999999999999999999999887542 33344566666
No 236
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.05 E-value=1.2 Score=29.33 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=51.8
Q ss_pred ccccc-hHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHH
Q 039342 139 FDDES-NWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLV 206 (248)
Q Consensus 139 ~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 206 (248)
+.+.. +.-+..+-++.+...++.|++......+++|-+.+++..|..+|+-.+.+ +.+....|..++
T Consensus 62 F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 62 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44444 44556666777777899999999999999999999999999999988764 334445576666
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.01 E-value=1.1 Score=35.63 Aligned_cols=73 Identities=8% Similarity=0.015 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHH-hHHHHhcccccccchHHHHHHHHHHHHh-----cCCCCCHHHHH
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ-VTGQMIKGEFDDESNWQMVEYVFDKLNC-----EGYGLGMRFYN 168 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 168 (248)
+...++.++...|+.++|...+..+.... |... .+..++.+ +...|+...|.+.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~a-l~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITA-YYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 45667888899999999999999887554 5444 55566666 6777888999998887644 49999888744
Q ss_pred HH
Q 039342 169 AL 170 (248)
Q Consensus 169 ~l 170 (248)
..
T Consensus 250 l~ 251 (388)
T 2ff4_A 250 LN 251 (388)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.78 E-value=1.3 Score=29.90 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCC
Q 039342 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFP 197 (248)
Q Consensus 143 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 197 (248)
++.+.|.++|+.+.+..-.- ...|-..-+--.++|+++.|.+++......+-+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 45666777777765542222 5555555556677888888888888877766555
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.19 E-value=5.1 Score=32.39 Aligned_cols=187 Identities=10% Similarity=0.079 Sum_probs=112.9
Q ss_pred CchHHHHHHHHHHHHc-----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH----Hhc
Q 039342 2 GLYKECQAILSRMSES-----GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNERTLEAVLSVY----CFA 71 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~-----g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~t~~~ll~~~----~~~ 71 (248)
|+++.|.+.+..+.+. ...-+......++..|.+.++|+...+.+..+. ++|..+... ..++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcC
Confidence 4677788877766542 234456778889999999999999988887764 344433332 2333332 233
Q ss_pred CChhHHH--HHHHHHHH---CCCCc---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCchH---HhHHHHhccc
Q 039342 72 GLVDESK--EQFQEIKS---SGILP---SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN--RISNIH---QVTGQMIKGE 138 (248)
Q Consensus 72 g~~~~a~--~~~~~m~~---~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~---~~~~~~l~~~ 138 (248)
...+... .+.+.+.. ..+.. .......|...|-..|++.+|.+++.++... +..... ..+...++ .
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r-l 186 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME-L 186 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH-H
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-H
Confidence 3333211 12211111 11111 1234467788888999999999999998643 222222 12222233 3
Q ss_pred ccccchHHHHHHHHHHHHh----cCCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 139 FDDESNWQMVEYVFDKLNC----EGYGLG--MRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 139 ~~~~~~~~~a~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
|...+++..|..++..... ....|+ ...|...+..+...+++.+|...|.+.-
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6667888999988887643 223333 3456778888888899988888877764
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.54 E-value=5.9 Score=32.02 Aligned_cols=190 Identities=13% Similarity=0.139 Sum_probs=113.4
Q ss_pred CCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCcCHhhHHHHHHHH----Hhc
Q 039342 37 GRFEEAIKAYVEMEK-----VRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKS-SGILPSVMCYCMLLAVY----AKS 106 (248)
Q Consensus 37 ~~~~~a~~~~~~m~~-----~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~----~~~ 106 (248)
|+++.|++.+..+.+ .+...+......++..|...|+++...+.+..+.+ +|..+.. ...+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 678888888776653 34566788899999999999999999888877764 3443332 23444333 233
Q ss_pred CCHHH--HHHHHHHHH--HCCC---CchHHhHHHHhcccccccchHHHHHHHHHHHHhc--CCCCC---HHHHHHHHHHH
Q 039342 107 NRWDD--AYGLLDEMH--TNRI---SNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCE--GYGLG---MRFYNALLEAL 174 (248)
Q Consensus 107 ~~~~~--a~~~~~~m~--~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~ 174 (248)
...+. -..+.+.+. ..|. .....-....+...+...|++..|..++..+... |..+. ...|...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33222 222222111 0111 1112233344445577789999999999998754 32222 34677888999
Q ss_pred HhcCchHHHHHHHHHHHH----CCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHH
Q 039342 175 WCLGLRERAARVLDEATK----RGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMY 231 (248)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~----~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~ 231 (248)
...+++.+|..++.+... ....|+ ...-++.+...-+...+++.+|.+.|.+..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~---lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYES---LKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999998642 222222 222233333344555666666666554443
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.04 E-value=2.1 Score=27.92 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=13.7
Q ss_pred HHHHHHhcCchHHHHHHHHHHHH
Q 039342 170 LLEALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~ 192 (248)
+--++.+.|++++|.+.++.+.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33455666666666666666655
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.87 E-value=3 Score=36.26 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHc------CCCCC-H----------HHHHHHH
Q 039342 4 YKECQAILSRMSESGVARNSDSFNAVIEAFRQGGR-FEEAIKAYVEMEKV------RCDPN-E----------RTLEAVL 65 (248)
Q Consensus 4 ~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~-~~~a~~~~~~m~~~------~~~p~-~----------~t~~~ll 65 (248)
.+.|..+|+++.+.....+......+|..+.+.++ --+|.+++.+..+. ...+. . ...+.=.
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 57799999998875432222222334444333332 23344444443221 12221 1 1122223
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcC-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039342 66 SVYCFAGLVDESKEQFQEIKSSGILPS-VMCYCMLLAVYAKSNRWDDAYGLLDEM 119 (248)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m 119 (248)
..|...|+++.|.++-++.... .|+ -.+|-.|...|.+.|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4567889999999999988764 565 579999999999999999999999877
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.54 E-value=3.8 Score=35.56 Aligned_cols=127 Identities=9% Similarity=0.042 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCcCHhh--HHHHHHHHHhcCC-HHHHHHHHHHHHHC------CCCchH---
Q 039342 62 EAVLSVYCFAGL-VDESKEQFQEIKSSGILPSVMC--YCMLLAVYAKSNR-WDDAYGLLDEMHTN------RISNIH--- 128 (248)
Q Consensus 62 ~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~-~~~a~~~~~~m~~~------~~~~~~--- 128 (248)
..+++.+.-.++ .+.|.++|+++.+.. |...+ ...+|..+.+.++ --+|.+++.+..+. ...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555555666 588999999998763 43322 2333433333332 22345555443321 111110
Q ss_pred H-hH---HHHhc---ccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 129 Q-VT---GQMIK---GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 129 ~-~~---~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
. .. ..++. .++...++++.|..+-++....- +-+..+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0 00 11211 22445788999999988876642 2258899999999999999999999999873
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.60 E-value=4.9 Score=26.14 Aligned_cols=81 Identities=9% Similarity=0.000 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCc--CHhhHHHHHHHHHhcCCHHHHHH
Q 039342 40 EEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE---SKEQFQEIKSSGILP--SVMCYCMLLAVYAKSNRWDDAYG 114 (248)
Q Consensus 40 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~ 114 (248)
..+.+-|......|. |+..+--.+-.++.+...... +..+++.+.+.+ .| .....-.|--++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444343 555555555566666665444 666666665542 12 22233344456666777777777
Q ss_pred HHHHHHHC
Q 039342 115 LLDEMHTN 122 (248)
Q Consensus 115 ~~~~m~~~ 122 (248)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766544
No 245
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=86.11 E-value=6.7 Score=27.21 Aligned_cols=93 Identities=9% Similarity=0.009 Sum_probs=52.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHh---hHHHHHHHHHh-
Q 039342 31 EAFRQGGRFEEAIKAYVEMEKVRCDPNE-RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM---CYCMLLAVYAK- 105 (248)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~- 105 (248)
...++.|+.+....++.. ++.... ..-.+.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++..
T Consensus 11 ~~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~ 86 (186)
T 3t8k_A 11 SAAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86 (186)
T ss_dssp HHHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 344567888876555543 322111 112345566666777776677888888888776543 23344433332
Q ss_pred cCCHHHHHHHHHHHHHCCCCch
Q 039342 106 SNRWDDAYGLLDEMHTNRISNI 127 (248)
Q Consensus 106 ~~~~~~a~~~~~~m~~~~~~~~ 127 (248)
..+.....++.+.+.+.|..++
T Consensus 87 ~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 87 GNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSS
T ss_pred CcchhhHHHHHHHHHHCCCCCC
Confidence 2345555667777777776543
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.97 E-value=9.1 Score=30.74 Aligned_cols=95 Identities=7% Similarity=-0.090 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCchHH----h
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSS--GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT---NRISNIHQ----V 130 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~----~ 130 (248)
++..+-..|.+.|+++.|.+.+.++.+. +..--...+-.+|+.+...+++..+...+.+... .+..|... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4566788899999999999999999864 2223356788888999999999999998888643 33233322 1
Q ss_pred HHHHhcccccccchHHHHHHHHHHHHh
Q 039342 131 TGQMIKGEFDDESNWQMVEYVFDKLNC 157 (248)
Q Consensus 131 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 157 (248)
+..++ +...+++..|...|-+...
T Consensus 213 ~~gl~---~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIH---CLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHG---GGGTSCHHHHHHHHHHHHH
T ss_pred HHHHH---HHHhChHHHHHHHHHHHhc
Confidence 22222 2345666776666655443
No 247
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=85.38 E-value=2.6 Score=31.53 Aligned_cols=17 Identities=6% Similarity=-0.148 Sum_probs=10.0
Q ss_pred HHHHHHHHHHcCCCCCc
Q 039342 226 WLNKMYEMFMMGEDLPQ 242 (248)
Q Consensus 226 ~~~~m~~~~~~~~~~~~ 242 (248)
+++.+.+.|.+.+...+
T Consensus 236 iv~~Ll~~g~~~~~~~~ 252 (285)
T 3kea_A 236 IAKMIIEKHVEYKSDSY 252 (285)
T ss_dssp HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHcCCCCCCccc
Confidence 55666666766554443
No 248
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.77 E-value=0.85 Score=33.72 Aligned_cols=16 Identities=0% Similarity=-0.338 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCCCCC
Q 039342 226 WLNKMYEMFMMGEDLP 241 (248)
Q Consensus 226 ~~~~m~~~~~~~~~~~ 241 (248)
+++.+.+.|..++...
T Consensus 268 i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 268 IAELLCKRGASTDCGD 283 (285)
T ss_dssp HHHHHHHHSSCSCCSS
T ss_pred HHHHHHHcCCCCCccc
Confidence 5666777777766543
No 249
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.75 E-value=8.7 Score=30.84 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=69.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCcCHh----
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVR--CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS---GILPSVM---- 94 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~---- 94 (248)
.++..+-..|.+.|+.+.|.+.|.++...- ..--...+-.+|..+...+++..+...+++.... +-.|+..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 467788899999999999999999997653 3334567778899999999999999999988642 3223222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
.|..+ .+...+++..|-..|-+....
T Consensus 212 ~~~gl--~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGI--HCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHH--GGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHhChHHHHHHHHHHHhcc
Confidence 12211 223567888888888776443
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.69 E-value=24 Score=32.39 Aligned_cols=108 Identities=9% Similarity=0.088 Sum_probs=67.8
Q ss_pred CCchHHHHHHHHHHHHcCCCC-----------------------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 039342 1 GGLYKECQAILSRMSESGVAR-----------------------NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN 57 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~-----------------------~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 57 (248)
+|++++|.+.|.+... |+.. -..=|..++..|-+.+.++.+.++-....+..-+-+
T Consensus 855 ~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~ 933 (1139)
T 4fhn_B 855 SKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD 933 (1139)
T ss_dssp TTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC
T ss_pred cCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCC
Confidence 5889999999977532 1111 112256677777777887777776665544321111
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHH
Q 039342 58 ----ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111 (248)
Q Consensus 58 ----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 111 (248)
...|..+.+++...|++++|...+-.+.....+ ......+|..++..+..+.
T Consensus 934 ~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 934 EDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred hhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 125677788888888888888887777655433 4456666666666665443
No 251
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=84.01 E-value=1.9 Score=30.94 Aligned_cols=86 Identities=9% Similarity=0.007 Sum_probs=45.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhh--HHHHHHHHH
Q 039342 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT--LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMC--YCMLLAVYA 104 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~ 104 (248)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 34556677888887777777766665544321 123344455566654 4444445555543221 123334445
Q ss_pred hcCCHHHHHHHHHH
Q 039342 105 KSNRWDDAYGLLDE 118 (248)
Q Consensus 105 ~~~~~~~a~~~~~~ 118 (248)
..|+.+-+..+++.
T Consensus 88 ~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 88 EHRSPTCLRALLDS 101 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 56676655555554
No 252
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=83.07 E-value=1.9 Score=31.59 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=31.2
Q ss_pred CchHHHHHHHHHHHHcCCCCCHH-------hHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSD-------SFNAVIEAFR--QGGRFEEAIKAYVEME 50 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~-------~y~~li~~~~--~~~~~~~a~~~~~~m~ 50 (248)
|+.+....+++.+.+.|..++.. -++.|..+.. +.|+.+-+..+++.-.
T Consensus 16 g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 16 GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp TCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 66677777788777777666543 3344544442 5688887777776643
No 253
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=82.95 E-value=1.8 Score=31.16 Aligned_cols=180 Identities=8% Similarity=-0.000 Sum_probs=86.8
Q ss_pred CCchHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChhH
Q 039342 1 GGLYKECQAILSRMSESGVARNSDS--FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL--EAVLSVYCFAGLVDE 76 (248)
Q Consensus 1 ~g~~~~a~~~~~~m~~~g~~~~~~~--y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~g~~~~ 76 (248)
.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..|+.... .+.+...++.|+.+-
T Consensus 19 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 94 (241)
T 1k1a_A 19 QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACEHRSPTC 94 (241)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHHcCCHHH
Confidence 3677777777777766666554321 2234555666777654 4455556665543221 234555567788776
Q ss_pred HHHHHHHHHHCCCCc---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHh----HHHHhcccccccchHHHHH
Q 039342 77 SKEQFQEIKSSGILP---SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV----TGQMIKGEFDDESNWQMVE 149 (248)
Q Consensus 77 a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~ 149 (248)
+..+++.....++.+ +....+. +...+..|+.+-+ +.+.+.|..++... .+.+.. ....++.+
T Consensus 95 ~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~g~t~L~~--A~~~~~~~--- 164 (241)
T 1k1a_A 95 LRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETV----QLLLERGADIDAVDIKSGRSPLIH--AVENNSLS--- 164 (241)
T ss_dssp HHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHH--HHHTTCHH---
T ss_pred HHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHH----HHHHHcCCCcccccccCCCcHHHH--HHHcCCHH---
Confidence 666665543221222 2222233 3333455665444 44444454332111 111111 11233433
Q ss_pred HHHHHHHhcCCCCCHHH--HHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCc
Q 039342 150 YVFDKLNCEGYGLGMRF--YNALLEALWCLGLRERAARVLDEATKRGLFPEL 199 (248)
Q Consensus 150 ~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 199 (248)
+++.+.+.|..++... -.+.+...+..|+.+ +.+.+.+.|..|+.
T Consensus 165 -~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 165 -MVQLLLQHGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSSL 211 (241)
T ss_dssp -HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTTC
T ss_pred -HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCCC
Confidence 4444445565554321 123444555666655 34444456766654
No 254
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.91 E-value=7 Score=27.73 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 039342 4 YKECQAILSRMSESGVARNSD---SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN-ERTLEAVLSVYCFAGLVDESKE 79 (248)
Q Consensus 4 ~~~a~~~~~~m~~~g~~~~~~---~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~ 79 (248)
++++.+.|..... .+-|+. .|-..+..| ..+...++.++|..|..+||--. +..|...-..+-..|++.+|.+
T Consensus 60 LErc~~~F~~~~r--YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 60 MERCLIYIQDMET--YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHTTCGG--GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhccccc--ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455555555443 333443 444444443 24457789999999988876543 4667788888888999999999
Q ss_pred HHHHHHHCCCCcCHh
Q 039342 80 QFQEIKSSGILPSVM 94 (248)
Q Consensus 80 ~~~~m~~~~~~p~~~ 94 (248)
+|+.=.+.+-.|-..
T Consensus 137 Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 137 LLELGAENNCRPYNR 151 (202)
T ss_dssp HHHHHHHTTCBSHHH
T ss_pred HHHHHHHcCCccHHH
Confidence 999988888787543
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.91 E-value=10 Score=30.12 Aligned_cols=132 Identities=11% Similarity=0.011 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCc---CHhhHHHHHHHHHhcCC-HHHHHHHHHHHHH----CCCCchHHh
Q 039342 60 TLEAVLSVYCFAGLVDESKEQFQEIKSS-GILP---SVMCYCMLLAVYAKSNR-WDDAYGLLDEMHT----NRISNIHQV 130 (248)
Q Consensus 60 t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p---~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~----~~~~~~~~~ 130 (248)
....|...|.+.|+.++..+++...+.. +..| .......+|+.+....+ .+.-.++..+..+ ....--...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777777665432 1112 23345555665554322 3333333333322 111000111
Q ss_pred HHHHhcccccccchHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 131 TGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG-----MRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 131 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
...=+...+-..|++..|..++..+.+.--..| ...|..-++.|...+++.++...+....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111222234445555555555555444311111 1223344445555555555555555543
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.73 E-value=10 Score=25.96 Aligned_cols=103 Identities=12% Similarity=0.100 Sum_probs=60.2
Q ss_pred cCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 039342 17 SGVARNSDS--FNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNE-------RTLEAVLSVYCFAGLVDESKEQFQEIKS 86 (248)
Q Consensus 17 ~g~~~~~~~--y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 86 (248)
.|..|.-.. +-.-+..+...+.++.|.-+.+.+... +-.|+. .++..+-+++...|++..|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 455554443 444577888899999998888776432 223441 3556677888999999999999988532
Q ss_pred C-CCCc-----------------------CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039342 87 S-GILP-----------------------SVMCYCMLLAVYAKSNRWDDAYGLLDEM 119 (248)
Q Consensus 87 ~-~~~p-----------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m 119 (248)
. ..-+ +...---+-.+|.+.+++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 1101 1122223555666777777777777744
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.58 E-value=2.7 Score=26.08 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHH
Q 039342 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225 (248)
Q Consensus 146 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~ 225 (248)
++|.-|-+.+...+. ...+--+-+..+.++|++++|..+.+.+ ..||...+-.|- -++.|..++++.
T Consensus 24 qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc-------e~rlGl~s~le~ 90 (116)
T 2p58_C 24 EEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC-------EYRLGLGSALES 90 (116)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH-------HHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH-------HHhcccHHHHHH
Confidence 455555555554433 2222223334556666666666665433 255554444433 234555555555
Q ss_pred HHHHH
Q 039342 226 WLNKM 230 (248)
Q Consensus 226 ~~~~m 230 (248)
.+..+
T Consensus 91 rL~~l 95 (116)
T 2p58_C 91 RLNRL 95 (116)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.36 E-value=2.6 Score=26.15 Aligned_cols=72 Identities=17% Similarity=0.089 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHHHHH
Q 039342 146 QMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISV 225 (248)
Q Consensus 146 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~ 225 (248)
++|.-|-+.+...+. ...+--+-+..+.++|++++|..+.+.+ ..||...+-.|- -++.|..++++.
T Consensus 23 qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc-------e~rlGl~s~le~ 89 (115)
T 2uwj_G 23 EEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC-------EWHLGLGAALDR 89 (115)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH-------HHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH-------HHhcccHHHHHH
Confidence 445555555544433 2222223334455666666666554432 245544443333 245555555555
Q ss_pred HHHHH
Q 039342 226 WLNKM 230 (248)
Q Consensus 226 ~~~~m 230 (248)
.+..+
T Consensus 90 rL~~l 94 (115)
T 2uwj_G 90 RLAGL 94 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 259
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=78.21 E-value=11 Score=25.48 Aligned_cols=54 Identities=7% Similarity=-0.076 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHh
Q 039342 41 EAIKAYVEMEKVRCDPN-ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM 94 (248)
Q Consensus 41 ~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 94 (248)
++.++|..|..+||--. +..|...-..+-..|++.+|.++|+.=.+.+-.|-..
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 37889999988877543 4667777888888999999999999988887777543
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.36 E-value=8.5 Score=28.73 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=23.9
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME 50 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~ 50 (248)
|++++|++....-.+.. +-|...=..++..+|-.|+|+.|..-++...
T Consensus 11 g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 11 GQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44555555544433322 1345555555555555555555555555543
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.26 E-value=12 Score=28.04 Aligned_cols=119 Identities=8% Similarity=-0.035 Sum_probs=67.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCchHHhHHHHhcccccccc
Q 039342 66 SVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNR--ISNIHQVTGQMIKGEFDDES 143 (248)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~~l~~~~~~~~ 143 (248)
....+.|.++.+.+....-.+.. +-|...-..++.-+|-.|+|+.|..-++...+.. ..|...+|..+|.+-..+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~- 82 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK- 82 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHH-
Confidence 34566777888777776666553 2366677778888888888888887777765443 2344456666665421110
Q ss_pred hHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHH--hcCchHHHHHHHHHHHH
Q 039342 144 NWQMVEYVFDKLNCEG-YGLGMRFYNALLEALW--CLGLRERAARVLDEATK 192 (248)
Q Consensus 144 ~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~ 192 (248)
++|.-=..-+ +.....-...++++.. ..|+.+.|..+-....+
T Consensus 83 ------~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 83 ------DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ------HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 0111000000 1112234455666554 35888888888777654
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.55 E-value=11 Score=23.38 Aligned_cols=85 Identities=13% Similarity=-0.052 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 039342 38 RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLD 117 (248)
Q Consensus 38 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 117 (248)
..++|.-+-+.+...+. ....--+-++.+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666655433 11111222445566777777766554433 567776666543 35666777777776
Q ss_pred HHHHCCCCchHHhH
Q 039342 118 EMHTNRISNIHQVT 131 (248)
Q Consensus 118 ~m~~~~~~~~~~~~ 131 (248)
++..+|- |....|
T Consensus 93 ~la~sg~-p~~q~F 105 (115)
T 2uwj_G 93 GLGGSSD-PALADF 105 (115)
T ss_dssp HHHTCSS-HHHHHH
T ss_pred HHHhCCC-HHHHHH
Confidence 6665553 433333
No 263
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=76.48 E-value=14 Score=25.32 Aligned_cols=72 Identities=13% Similarity=0.020 Sum_probs=50.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHh
Q 039342 20 ARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPN-ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM 94 (248)
Q Consensus 20 ~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 94 (248)
+-|+.-...-|...-..+ ...++|..|..+||--. +..|...-..+-..|++.+|.++|+.-.+.+-.|...
T Consensus 60 knD~RyLklWl~ya~~~~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLCN---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp TTCHHHHHHHHHHHHHCS---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 345444444443222233 36678999988887544 4667777888888999999999999999888888654
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.17 E-value=27 Score=27.69 Aligned_cols=164 Identities=9% Similarity=-0.006 Sum_probs=100.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCC-hhHHHHH----HHHHHHC-CCCcC
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDP---NERTLEAVLSVYCFAGL-VDESKEQ----FQEIKSS-GILPS 92 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p---~~~t~~~ll~~~~~~g~-~~~a~~~----~~~m~~~-~~~p~ 92 (248)
......|...|.+.|+.++..+++...+.- +.-| .......+|..+....+ .+.-.++ +++-... ..-..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999887432 2223 33455678888877543 3333333 3333332 11111
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhH----HHHhcccccccchHHHHHHHHHHHHhc--CCCCCHHH
Q 039342 93 VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT----GQMIKGEFDDESNWQMVEYVFDKLNCE--GYGLGMRF 166 (248)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~ 166 (248)
...=.-+...|...|++.+|..++.++.+.--..+..++ ..+-...+...+++..+...+...... .+.|++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 112236889999999999999999999775333222211 222223356667889999888776543 23244443
Q ss_pred HHHHHH-----HHH-hcCchHHHHHHH
Q 039342 167 YNALLE-----ALW-CLGLRERAARVL 187 (248)
Q Consensus 167 ~~~li~-----~~~-~~g~~~~a~~~~ 187 (248)
-. .++ .+. ..+++..|...|
T Consensus 179 ~a-~i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 179 QG-ALDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HH-HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HH-HHHHHhhHHHHHhccCHHHHHHHH
Confidence 32 222 234 678888888776
No 265
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=75.32 E-value=27 Score=27.27 Aligned_cols=162 Identities=9% Similarity=0.039 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG--LVDESKEQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
...++|.-|...++.++|...++++......| .....+|......+ .-+.+-.++..+.. ++-+.......+...
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~--~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~l 132 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKS--GVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKL 132 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGG--GHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchhHH--HHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 46678888999999999999998875333222 22333344332222 23444455555553 444444433333333
Q ss_pred HHhcCC----HHHHHHHHH----HHHHCCCCchHHhHHHHhcccccc-cc--hHHHHHHHHH------HHHh-c----CC
Q 039342 103 YAKSNR----WDDAYGLLD----EMHTNRISNIHQVTGQMIKGEFDD-ES--NWQMVEYVFD------KLNC-E----GY 160 (248)
Q Consensus 103 ~~~~~~----~~~a~~~~~----~m~~~~~~~~~~~~~~~l~~~~~~-~~--~~~~a~~~~~------~m~~-~----~~ 160 (248)
+....+ ...|..++. +....++.|.......... ... .+ -.+.|..++. .+.+ + |.
T Consensus 133 le~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~--~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~ 210 (358)
T 3eiq_C 133 LKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT--VDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQ 210 (358)
T ss_dssp HHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC-----CCHHHHHHHHHHHHHHTC---------CCCCCCSS
T ss_pred HHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhc--ccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCC
Confidence 333322 223333333 3333343332222211000 000 00 0122222211 1111 1 22
Q ss_pred CCC---HHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 161 GLG---MRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 161 ~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
.|. ....+.++.-|...|+.++|...++++.
T Consensus 211 ~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 211 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHcc
Confidence 332 2346788999999999999999999885
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.15 E-value=12 Score=23.22 Aligned_cols=79 Identities=14% Similarity=-0.013 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHH
Q 039342 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLL 116 (248)
Q Consensus 37 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 116 (248)
...++|.-+-+.+...+. ....--+-++.+...|++++|..+.+.+. .||...|-+|-.. +.|..+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHH
Confidence 345666666666655433 11111222445666777777776654433 5677766665443 556666666666
Q ss_pred HHHHHCC
Q 039342 117 DEMHTNR 123 (248)
Q Consensus 117 ~~m~~~~ 123 (248)
.++..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6665555
No 267
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=73.55 E-value=5.6 Score=28.26 Aligned_cols=98 Identities=10% Similarity=-0.028 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHH
Q 039342 9 AILSRMSESGVARNSD--SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT---LEAVLSVYCFAGLVDESKEQFQE 83 (248)
Q Consensus 9 ~~~~~m~~~g~~~~~~--~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~ 83 (248)
++++.+.+.|..++.. .-.+.+...+..|+.+-+..+ .+.|..++... -.+.+...++.|+.+- ++.
T Consensus 23 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~~~t~L~~A~~~~~~~~----v~~ 94 (240)
T 3eu9_A 23 ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY----ISKGAIVDQLGGDLNSTPLHWATRQGHLSM----VVQ 94 (240)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCBTTTTBCHHHHHHHHTCHHH----HHH
T ss_pred HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHH----HHcCCcchhhcCCcCCChhHHHHHcCCHHH----HHH
Confidence 3444455555544322 122355666777777654444 34443332111 1233444455566553 444
Q ss_pred HHHCCCCcCHh---hHHHHHHHHHhcCCHHHHHHH
Q 039342 84 IKSSGILPSVM---CYCMLLAVYAKSNRWDDAYGL 115 (248)
Q Consensus 84 m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~ 115 (248)
+.+.|..|+.. ..+ .+...+..|+.+-+..+
T Consensus 95 Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~L 128 (240)
T 3eu9_A 95 LMKYGADPSLIDGEGCS-CIHLAAQFGHTSIVAYL 128 (240)
T ss_dssp HHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHH
T ss_pred HHHcCCCCcccCCCCCC-HHHHHHHcCHHHHHHHH
Confidence 44555554422 222 33444555665543333
No 268
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=72.82 E-value=12 Score=21.85 Aligned_cols=58 Identities=9% Similarity=0.073 Sum_probs=26.6
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC
Q 039342 49 MEKVRCDPNERTLEAVLSVYCFAG-LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN 107 (248)
Q Consensus 49 m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 107 (248)
|++.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|-.-.+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555555433 23334444333 34445555555555443334444444444444444
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.35 E-value=10 Score=27.74 Aligned_cols=30 Identities=7% Similarity=-0.140 Sum_probs=19.0
Q ss_pred HHHHHhcCchHHHHHHHHHHHHCCCCCCcc
Q 039342 171 LEALWCLGLRERAARVLDEATKRGLFPELF 200 (248)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 200 (248)
+...+..++.....++.+.+.+.|..++..
T Consensus 186 l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~ 215 (285)
T 1wdy_A 186 LIHALLSSDDSDVEAITHLLLDHGADVNVR 215 (285)
T ss_dssp HHHHHHCSCTTTHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHccccchHHHHHHHHHHcCCCCCCc
Confidence 334445566555567777777788777654
No 270
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=70.18 E-value=32 Score=26.95 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCchHHhH
Q 039342 59 RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR-WDDAYGLLDEMHTNRISNIHQVT 131 (248)
Q Consensus 59 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~ 131 (248)
.....+|.-|...|++++|.+.++++......-...++..+..++-+... -+.+-.++..+...++.+.....
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~ 86 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFM 86 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 35567888888888888888888887531100013344444444444321 34455666666666654444433
No 271
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.13 E-value=12 Score=26.98 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH
Q 039342 40 EEAIKAYVEMEKVRCDPN-ERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV 93 (248)
Q Consensus 40 ~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 93 (248)
+...++|..|...||--. +..|...-..+-..|++.+|.++|+.=.+.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 467789999988877543 466777888888899999999999998887777743
No 272
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=69.83 E-value=21 Score=23.59 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=35.4
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC
Q 039342 47 VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108 (248)
Q Consensus 47 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 108 (248)
+.+++.|++++..= ..++..+...+..-.|.++++.+++.+...+..|----++.+...|-
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34566777776643 34555555566666777888887766544454444444444444443
No 273
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=68.64 E-value=15 Score=21.37 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=36.7
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 039342 12 SRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLV 74 (248)
Q Consensus 12 ~~m~~~g~~~~~~~y~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 74 (248)
+.+++.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.|..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34556676665544 34455555543 4556667777776666556666666666666666544
No 274
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=67.72 E-value=38 Score=25.79 Aligned_cols=197 Identities=12% Similarity=0.055 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCcCHhh---HHHHH
Q 039342 26 FNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG--LVDESKEQFQEIKSSGILPSVMC---YCMLL 100 (248)
Q Consensus 26 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~---~~~li 100 (248)
...+|.-|...|+.++|...++++......|.. ...+|......+ .-+.+-.++..+.. ++-+.... |..++
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~--v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll 82 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGV--PVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLL 82 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGH--HHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 457888899999999999998887544333322 223333333222 24445556666654 33333333 33333
Q ss_pred HHHHhcC-CHHHHHHHH----HHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHh-----------cC----C
Q 039342 101 AVYAKSN-RWDDAYGLL----DEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNC-----------EG----Y 160 (248)
Q Consensus 101 ~~~~~~~-~~~~a~~~~----~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----------~~----~ 160 (248)
...-... +...|..++ .+....++.|........-.. -...| ..+...-+.+.. +| .
T Consensus 83 ~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~-~~~~g--~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~ 159 (307)
T 2zu6_B 83 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-DCVQA--RAALDKATVLLSMSKGGKRKDSVWGSGGGQ 159 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTC-CCHHH--HHHHHHHHHHHHTCC----CCCSSCCCSTT
T ss_pred HhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcc-cchHH--HHHHHHHHHHhcccccHhHHhhhcCCCCCC
Confidence 3222211 222333333 333344444433322211110 00001 111221112221 11 1
Q ss_pred CCC---HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccc--hHHHHHHHHHHHHHHHH
Q 039342 161 GLG---MRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEG--GAYTAISVWLNKMYEMF 234 (248)
Q Consensus 161 ~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~--g~~~~~~~~~~~m~~~~ 234 (248)
.|. ....+.++.-|...|+.++|...++++.. | .-+..++...+..++-+. ...+.+..++..+.+.|
T Consensus 160 ~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~----p--~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~ 232 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEV----P--HFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSS 232 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC----G--GGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCC----C--cchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCC
Confidence 111 12356888889999999999999998852 2 222333433333444443 23455555666665544
No 275
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=67.62 E-value=24 Score=23.36 Aligned_cols=59 Identities=7% Similarity=0.043 Sum_probs=31.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC
Q 039342 47 VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN 107 (248)
Q Consensus 47 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 107 (248)
+.+++.|++++..= ..++..+...+ .-.|.++++.+++.+...+..|.---++.+...|
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34566677776643 33445555555 5677777777776654444444333334444333
No 276
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=67.35 E-value=23 Score=23.08 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=33.9
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC
Q 039342 48 EMEKVRCDPNERTLEAVLSVYCFAG-LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN 107 (248)
Q Consensus 48 ~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 107 (248)
.+++.|++++..= ..++..+...+ ..-.|.++++.+++.+...+..|----++.+...|
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3566777776643 34555555555 56677888888877654445544433444444444
No 277
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=66.39 E-value=26 Score=23.33 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=32.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC
Q 039342 47 VEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN 107 (248)
Q Consensus 47 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 107 (248)
+.+++.|++++..= ..++..+...+..-.|.++++.+++.+...+..|.---+..+...|
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44566777665533 3455666666667777888888776654444444333344444444
No 278
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=65.40 E-value=24 Score=24.00 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHhcCChhHHHHHHHHHHH
Q 039342 37 GRFEEAIKAYVEMEKVRCDP--NERTLEAVLS-V-----YCFAGLVDESKEQFQEIKS 86 (248)
Q Consensus 37 ~~~~~a~~~~~~m~~~~~~p--~~~t~~~ll~-~-----~~~~g~~~~a~~~~~~m~~ 86 (248)
|++-+|.++|+..-...-.+ ....|.-||. . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777777777775554444 4556666666 2 2456778888877777654
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=64.93 E-value=38 Score=24.67 Aligned_cols=90 Identities=18% Similarity=0.061 Sum_probs=58.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 039342 29 VIEAFRQGGRFEEAIKAYVEMEKV--RCDP----NERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAV 102 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 102 (248)
-++.+....++++|.+++++.++. ++++ +.......+..-.....-.-+..+.+++.. .++...-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 577889999999999999887542 3332 112223334444444444455555555533 4556667777899
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 039342 103 YAKSNRWDDAYGLLDEMHT 121 (248)
Q Consensus 103 ~~~~~~~~~a~~~~~~m~~ 121 (248)
+.+-|+-++|.++|=+.+.
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 9999999999999876543
No 280
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=64.89 E-value=7.5 Score=26.64 Aligned_cols=127 Identities=9% Similarity=0.007 Sum_probs=67.7
Q ss_pred HcCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHC-CCCcC-------HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 51 KVRCDPNERTLE--AVLSVYCFAGLVDESKEQFQEIKSS-GILPS-------VMCYCMLLAVYAKSNRWDDAYGLLDEMH 120 (248)
Q Consensus 51 ~~~~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~ 120 (248)
..|+.|.-..|+ .-+..+...|.++.|.-+.+.+... +..|+ ..++..+-+++...+++..|...|++..
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 346666555444 3477888899999999888886532 11233 1366777888999999999999999864
Q ss_pred HCC-CCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 039342 121 TNR-ISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEA 190 (248)
Q Consensus 121 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 190 (248)
+.. ..+........+. ....... .....++...---+-.+|.+.+++++|..+++.+
T Consensus 91 q~~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 91 QQKKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 321 1111111100000 0000000 0112233344344778889999999999998754
No 281
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=64.35 E-value=39 Score=24.60 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCc----hHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039342 99 LLAVYAKSNRWDDAYGLLDEMHTN--RISN----IHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172 (248)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 172 (248)
-++.+....++++|..++++..+. +.++ ........+...+. ...-..+..+.+++.. .++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~-eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIE-QRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHH-HHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHH-HHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 455666667777777776655321 1111 11111122222111 2222444455555533 455666777788
Q ss_pred HHHhcCchHHHHHHHHHHH
Q 039342 173 ALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~ 191 (248)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 8899999999998886554
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=63.97 E-value=30 Score=23.21 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 039342 62 EAVLSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 62 ~~ll~~~~~~g~~~~a~~~~~~m~ 85 (248)
+.+|.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344555555555555555555543
No 283
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=63.84 E-value=29 Score=23.06 Aligned_cols=60 Identities=8% Similarity=0.052 Sum_probs=32.9
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC
Q 039342 47 VEMEKVRCDPNERTLEAVLSVYCFAG-LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSN 107 (248)
Q Consensus 47 ~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 107 (248)
+.|++.|++++..= ..++..+...+ ..-.|.++++.+++.+...+..|.---++.+...|
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34566777776643 34455555555 56677777777776654444444333334444433
No 284
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=63.41 E-value=12 Score=26.98 Aligned_cols=58 Identities=10% Similarity=-0.079 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhc---CChhHHHHHHHHHHH
Q 039342 28 AVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE-------RTLEAVLSVYCFA---GLVDESKEQFQEIKS 86 (248)
Q Consensus 28 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~t~~~ll~~~~~~---g~~~~a~~~~~~m~~ 86 (248)
+.+...++.|+.+.+..+++.+.+.|..++. .-.+.|. ..+.. |+.+-+..+++.-..
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~-~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM-KAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHH-HHHHTCBTTBCTTHHHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHH-HHHHccccchHHHHHHHHhcCCc
Confidence 3455667788888887888887777765553 2333443 34444 777777777765544
No 285
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=62.36 E-value=7.2 Score=26.91 Aligned_cols=82 Identities=5% Similarity=-0.074 Sum_probs=37.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHh---hHHHHHHHHHhc
Q 039342 30 IEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM---CYCMLLAVYAKS 106 (248)
Q Consensus 30 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~ 106 (248)
+...+..|+.+.+..++..-...--..|..-++ .+...++.|+.+ +++.+.+.|..++.. ..+. +...+..
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~ 82 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIE----IAKALIDRGADINLQNSISDSP-YLYAGAQ 82 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCH-HHHHHHc
Confidence 344456777777666654321000011222222 334444556654 444444555554432 2233 3344556
Q ss_pred CCHHHHHHHHH
Q 039342 107 NRWDDAYGLLD 117 (248)
Q Consensus 107 ~~~~~a~~~~~ 117 (248)
|+.+-+..+++
T Consensus 83 ~~~~~~~~Ll~ 93 (201)
T 3hra_A 83 GRTEILAYMLK 93 (201)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 77665555553
No 286
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=62.31 E-value=24 Score=23.33 Aligned_cols=63 Identities=21% Similarity=0.147 Sum_probs=45.1
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 039342 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75 (248)
Q Consensus 11 ~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 75 (248)
-+.+++.|++++..- ..++..+...+ .-.|.++++.+++.+...+..|.=--|+.+...|-+.
T Consensus 7 ~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 345677888877654 33455555556 7789999999998887778877767777777777543
No 287
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=61.95 E-value=32 Score=22.87 Aligned_cols=58 Identities=14% Similarity=0.027 Sum_probs=36.4
Q ss_pred ccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 139 FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 139 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
.....+...+..+++.+...+..-.....-.+--++.+.|++++|.++.+.+.+. +|+
T Consensus 52 S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 52 STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 3444555667777777666432212222334555788888899998888888774 665
No 288
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=61.91 E-value=30 Score=22.51 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=46.5
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 039342 12 SRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76 (248)
Q Consensus 12 ~~m~~~g~~~~~~~y~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 76 (248)
+.+++.|.+++..-. .++..+...+ ..-.|.++++.+++.+...+..|.---|+.+...|-+.+
T Consensus 7 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 7 SELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 346778887765544 4566666666 788899999999998877888887777777777775543
No 289
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=61.61 E-value=35 Score=23.20 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCc--CHhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 039342 61 LEAVLSVYCFAGLVDESKEQFQEIKSSGILP--SVMCYCMLLA-V-----YAKSNRWDDAYGLLDEMHT 121 (248)
Q Consensus 61 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~m~~ 121 (248)
|..-+..+-. |++-+|.++++..=...-.+ ....|..||. . ..+.|+...|..++.+-..
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444444 99999999999986554445 5567777777 2 2357999999999998755
No 290
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=61.60 E-value=16 Score=24.38 Aligned_cols=83 Identities=7% Similarity=-0.025 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHh-cCCCC---CHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHH
Q 039342 146 QMVEYVFDKLNC-EGYGL---GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYT 221 (248)
Q Consensus 146 ~~a~~~~~~m~~-~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~ 221 (248)
+.+.++.+...+ .|..| ++.++..+++...+.|-.++. +.|..|.+.. ...+++|+......+... ... .+.
T Consensus 55 Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~~R-N~tvH~Y~e~~a~~v~~~-I~~-~l~ 130 (146)
T 1jog_A 55 ELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRDMR-NITSHTYDQEKAMAVYAQ-IDD-FLI 130 (146)
T ss_dssp HHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHHHH-TTGGGTTSHHHHHHHHHT-HHH-HHH
T ss_pred HHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHHHh-hHhcccccHhhHHHHHHH-HHH-HHH
Confidence 444555544443 36554 367788899999999988777 5666666432 235677776653332222 122 455
Q ss_pred HHHHHHHHHHH
Q 039342 222 AISVWLNKMYE 232 (248)
Q Consensus 222 ~~~~~~~~m~~ 232 (248)
....+.+.+.+
T Consensus 131 ~f~~l~~~l~~ 141 (146)
T 1jog_A 131 ESSFLLEQLRQ 141 (146)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 55556666654
No 291
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=61.10 E-value=29 Score=24.38 Aligned_cols=79 Identities=9% Similarity=-0.085 Sum_probs=45.0
Q ss_pred HHHHHHhcCCCCCHHH--HHHHHHHHHhcCchHHHHHHHHHHHHCCCCC---------CcchhhhHHhhhhhhccccchH
Q 039342 151 VFDKLNCEGYGLGMRF--YNALLEALWCLGLRERAARVLDEATKRGLFP---------ELFRHNKLVWSVDVHRMWEGGA 219 (248)
Q Consensus 151 ~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---------~~~t~~~li~~~~~~~~~~~g~ 219 (248)
+++.+.+.|..++... -.+.+...+..|+.+-+..+++.+.+.|-.+ |..-.+.+-++ ++.|.
T Consensus 136 ~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A------~~~g~ 209 (232)
T 2rfa_A 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA------GVEGN 209 (232)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHH------HHHTC
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHH------HHcCC
Confidence 4444555665554321 1245666778889988888888888887654 33333444322 34555
Q ss_pred HHHHHHHHHHHHHHHHcCCC
Q 039342 220 YTAISVWLNKMYEMFMMGED 239 (248)
Q Consensus 220 ~~~~~~~~~~m~~~~~~~~~ 239 (248)
.+ +++.+.+.|-.+..
T Consensus 210 ~~----~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 210 IV----MFQHLMQKRKHIAA 225 (232)
T ss_dssp HH----HHHHHHHHHHHC--
T ss_pred HH----HHHHHHhcCccchh
Confidence 55 45566666655543
No 292
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=60.38 E-value=16 Score=28.25 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 26 FNAVIEAFRQGGRFEEAIKAYVEME 50 (248)
Q Consensus 26 y~~li~~~~~~~~~~~a~~~~~~m~ 50 (248)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4456777777777777777777764
No 293
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=60.07 E-value=33 Score=22.47 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 039342 98 MLLAVYAKSNRWDDAYGLLDEMHT 121 (248)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~m~~ 121 (248)
-+--++.+.|+++.|.+..+.+.+
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344445555555555555555543
No 294
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=60.06 E-value=45 Score=23.93 Aligned_cols=63 Identities=8% Similarity=-0.168 Sum_probs=30.8
Q ss_pred HHHHHHhcCchHHHHHHHHHHHH---CCCCCCcc---hhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcC
Q 039342 170 LLEALWCLGLRERAARVLDEATK---RGLFPELF---RHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMG 237 (248)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~---t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~ 237 (248)
.+...+..|+.+-+ +.+.+ .|..++.. -.+.|.+++. .+....+..+...++++.+.+.|..+
T Consensus 143 pL~~A~~~g~~~~v----~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~-~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 143 PLSLAACTNQPHIV----HYLTENGHKQADLRRQDSRGNTVLHALVA-IADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp HHHHHHHTTCHHHH----HHHHHCSSCCCCTTCCCTTSCCHHHHHHH-HCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHH----HHHHhccccCCCCcccCCCCCcHHHHHHH-hccCchhHHHHHHHHHHHHHHhCccc
Confidence 34445556665443 33444 55555432 2344443332 12222333444456777777777665
No 295
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=59.87 E-value=27 Score=21.41 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-----HHCCCCcCHhhHHHH
Q 039342 42 AIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEI-----KSSGILPSVMCYCML 99 (248)
Q Consensus 42 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m-----~~~~~~p~~~~~~~l 99 (248)
+.++.+++..-|+.|+..+..-++..|...+- + +.++.++. ...|..|+....+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 45566666666777777777777776666653 2 33322221 234666666655544
No 296
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=59.60 E-value=13 Score=20.43 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=10.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC
Q 039342 36 GGRFEEAIKAYVEMEKVRCDPN 57 (248)
Q Consensus 36 ~~~~~~a~~~~~~m~~~~~~p~ 57 (248)
.|+++.|...+-.|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 3455555555555544444443
No 297
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=59.52 E-value=35 Score=29.25 Aligned_cols=32 Identities=3% Similarity=-0.077 Sum_probs=18.7
Q ss_pred CcchhhhHHhhhhhhccccchHHHHHHHHHHH
Q 039342 198 ELFRHNKLVWSVDVHRMWEGGAYTAISVWLNK 229 (248)
Q Consensus 198 ~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~ 229 (248)
+..|+..|+.-.-...+...|+++.|.+.+++
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33456666655555666777777776544443
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=58.90 E-value=4.6 Score=27.94 Aligned_cols=51 Identities=8% Similarity=-0.051 Sum_probs=26.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHH
Q 039342 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT--LEAVLSVYCFAGLVDESKEQFQE 83 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~ 83 (248)
.+...++.|+.+- ++.+.+.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 42 ~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 42 PLNIAVHNNDIEI----AKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 3444556677554 444555666554322 12334455566777665555533
No 299
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=58.87 E-value=36 Score=22.44 Aligned_cols=64 Identities=23% Similarity=0.248 Sum_probs=47.3
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 039342 11 LSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75 (248)
Q Consensus 11 ~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 75 (248)
-+.+++.|++++..-. .++..+...+..-.|.++++.+++.+...+..|.--.|+.+...|-+.
T Consensus 10 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 10 LETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 3456788987765544 455666667778889999999998887778878777777777777554
No 300
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=58.79 E-value=1e+02 Score=27.60 Aligned_cols=158 Identities=15% Similarity=0.017 Sum_probs=89.3
Q ss_pred HHHHHHHHhcCCH---HHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHH
Q 039342 27 NAVIEAFRQGGRF---EEAIKAYVEMEKV----RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCML 99 (248)
Q Consensus 27 ~~li~~~~~~~~~---~~a~~~~~~m~~~----~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 99 (248)
..++...|+.|+. +.|.+.|+..... .++||... .+...-.+.|.-+.-..+++..+... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 4567778888764 5677777776543 26677543 34444456677777777788777653 45556788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCchHHhHHHHhcccccccchHHHHHHHHHH----HHhcCCCCCHHHHHHHHHHH
Q 039342 100 LAVYAKSNRWDDAYGLLDEMHTNR-ISNIHQVTGQMIKGEFDDESNWQMVEYVFDK----LNCEGYGLGMRFYNALLEAL 174 (248)
Q Consensus 100 i~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~li~~~ 174 (248)
+.+++...+.....++++...... +++.... .++.+........+.+.+.+.. +.+ ........+..+|...
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~--~~~~~v~~n~~g~~~~~~f~~~n~~~l~~-~~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQDAT--STINSIASNVIGQPLAWDFVQSNWKKLFQ-DYGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHH--HHHHHHHHSTTHHHHHHHHHHHHCTTTTT-SSSSCCCCHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhhHH--HHHHHHhcChHHHHHHHHHHHHHHHHHHH-HhCCCchHHHHHHHHH
Confidence 999999999888888888776543 3333221 1122211222222444443322 111 1222334567788777
Q ss_pred HhcCchHHHHHHHHHHHH
Q 039342 175 WCLGLRERAARVLDEATK 192 (248)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~ 192 (248)
+..-.-++-.+-++...+
T Consensus 842 ~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 842 TRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HTTCCSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHh
Confidence 765444444444444443
No 301
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=58.55 E-value=37 Score=22.55 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=47.9
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 039342 11 LSRMSESGVARNSDSFNAVIEAFRQGG-RFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDE 76 (248)
Q Consensus 11 ~~~m~~~g~~~~~~~y~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 76 (248)
.+.+++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.---|..+...|-+.+
T Consensus 5 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 5 NQALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 3457788988776544 3555565666 678899999999998877788887777788877776543
No 302
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=57.77 E-value=11 Score=27.69 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=29.3
Q ss_pred CchHHHHHHHHHHHHcCCCC-------CHHhHHHHHHHHH--hcCCHHHHHHHHHHH
Q 039342 2 GLYKECQAILSRMSESGVAR-------NSDSFNAVIEAFR--QGGRFEEAIKAYVEM 49 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~-------~~~~y~~li~~~~--~~~~~~~a~~~~~~m 49 (248)
|+.+.+..+++...+.+... +..-++.|..++. +.|+.+-+..+++.-
T Consensus 24 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 24 SNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp TCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 56666666777666555432 3445566666654 358887777777664
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=57.75 E-value=40 Score=22.60 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEME 50 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~ 50 (248)
..+.+|.-|...|+.++|.+.++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34556666666666666666666664
No 304
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=57.65 E-value=63 Score=24.89 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 039342 62 EAVLSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 62 ~~ll~~~~~~g~~~~a~~~~~~m~ 85 (248)
..++.-|...|+.++|...++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 455556666666666655555553
No 305
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=55.85 E-value=22 Score=29.50 Aligned_cols=35 Identities=11% Similarity=-0.056 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 164 MRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
....+.+-+.|.+.|++-.|-+++..+-..+..++
T Consensus 217 ~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~~i~ 251 (525)
T 3i5p_A 217 LKISNILWVYYSRRSKFFESAEILYRLATSNFDIT 251 (525)
T ss_dssp -CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSSCCC
T ss_pred hhHHHHHHHHHHHcccHHHHHHHHHHHHhCCCCCC
Confidence 33456677888999999999999999887754443
No 306
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=55.36 E-value=77 Score=25.18 Aligned_cols=156 Identities=13% Similarity=0.063 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHHHCC----CCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHH
Q 039342 62 EAVLSVYCFAGL---VDESKEQFQEIKSSG----ILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134 (248)
Q Consensus 62 ~~ll~~~~~~g~---~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 134 (248)
..++...|..|+ .+.|.+.|+...+.+ ++||.. ..+...-.+. -++-..+++...... +..--..+
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr--~~Vy~~~~~~--~~~~~~l~~~y~~s~---~~~ek~~l 273 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVT--LAVFAVGAQS--TEGWDFLYSKYQFSL---SSTEKSQI 273 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGH--HHHHHHHTTS--HHHHHHHHHHHHHCC---CHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcc--eeEEeeeeCC--HHHHHHHHHHHhcCC---CHHHHHHH
Confidence 456677777776 567777887776532 445432 2222221222 233334444444432 12222233
Q ss_pred hcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-chHHHHHHHH----HHHHCCCCCCcchhhhHHhhh
Q 039342 135 IKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG-LRERAARVLD----EATKRGLFPELFRHNKLVWSV 209 (248)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~----~m~~~g~~p~~~t~~~li~~~ 209 (248)
+.+ .....+.....++++......+........ ++.+.+... ..+.|.+.+. .+.+. +.++...+..++...
T Consensus 274 l~a-L~~s~d~~ll~~~L~~~l~~~~ir~qD~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~~ 350 (419)
T 3rjo_A 274 EFA-LCRTQNKEKLQWLLDESFKGDKIKTQEFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMGT 350 (419)
T ss_dssp HHH-HTTCSCHHHHHHHHHHHHHTSSSCGGGHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHT
T ss_pred HHH-cCCCCCHHHHHHHHHHHhCCCCCchhHHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHHH
Confidence 333 455666677777777776655322233222 344444322 2344554443 22221 223334445555332
Q ss_pred hhhccccchHHHHHHHHHH
Q 039342 210 DVHRMWEGGAYTAISVWLN 228 (248)
Q Consensus 210 ~~~~~~~~g~~~~~~~~~~ 228 (248)
...+....+.+++..+++
T Consensus 351 -~~~~~t~~~l~e~~~Ff~ 368 (419)
T 3rjo_A 351 -TNQFSTRTRLEEVKGFFS 368 (419)
T ss_dssp -TTTCCSHHHHHHHHHHHH
T ss_pred -hhcCCCHHHHHHHHHHHH
Confidence 245566666666666554
No 307
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=55.33 E-value=45 Score=22.51 Aligned_cols=72 Identities=8% Similarity=0.146 Sum_probs=48.5
Q ss_pred HHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCcCHhhHHHHHHHHHhcCCHHH
Q 039342 39 FEEAIKAYVE-MEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS--GILPSVMCYCMLLAVYAKSNRWDD 111 (248)
Q Consensus 39 ~~~a~~~~~~-m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~ 111 (248)
.+.+++-+.+ +++.|++++.. =..++..+...+..-.|.++++.+++. +...+..|----++.+...|-+.+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3444444443 46778888764 356677777777888899999998876 555566555555677777776543
No 308
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=54.63 E-value=35 Score=20.97 Aligned_cols=58 Identities=10% Similarity=0.190 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCchHHhHHHH
Q 039342 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDE-----MHTNRISNIHQVTGQM 134 (248)
Q Consensus 75 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~-----m~~~~~~~~~~~~~~~ 134 (248)
-.+.++.+++..-|+.|+..+...++..|...+. + +.++.++ ....|..|+....+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 3456666677777777777777777777666654 1 2222222 1344666666665554
No 309
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=53.55 E-value=48 Score=22.28 Aligned_cols=50 Identities=14% Similarity=0.071 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 039342 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGIL 90 (248)
Q Consensus 39 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 90 (248)
.+.+..+++.+.+.|+--|..--...+....+.| .....+-.++.+.|+.
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 3444455555555554433333334444444322 2233444455555543
No 310
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=53.52 E-value=31 Score=21.01 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 9 AILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 9 ~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.+++.+.+.|+ -+......+-. .......+.|.++++.+...| | ..|..++.++...|....|..+
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG--~--~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRG--S--QALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC--T--THHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC--h--HHHHHHHHHHHHcCcHHHHHHH
Confidence 36777777776 34444444433 101257888999999988766 3 4688888888877777666544
No 311
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=53.38 E-value=49 Score=22.34 Aligned_cols=49 Identities=12% Similarity=0.059 Sum_probs=28.3
Q ss_pred HHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCchHHhHHH
Q 039342 84 IKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN--RISNIHQVTGQ 133 (248)
Q Consensus 84 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ 133 (248)
+++.|++++. --..++..+...+..-.|.++++.+.+. +...+..|.+.
T Consensus 24 L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYR 74 (162)
T 4ets_A 24 LRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYR 74 (162)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHH
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH
Confidence 4556666543 3455566666666666777777777665 43344444433
No 312
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=52.63 E-value=1.3e+02 Score=26.94 Aligned_cols=157 Identities=10% Similarity=0.034 Sum_probs=81.4
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHHHC----CCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHH
Q 039342 62 EAVLSVYCFAGL---VDESKEQFQEIKSS----GILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQM 134 (248)
Q Consensus 62 ~~ll~~~~~~g~---~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 134 (248)
..++...|+.|+ .+.|.+.|+..... .+.||. -+.+...-.+.|.-++-..++++......... -..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~e---k~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQLVNE---ADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCCSHHH---HHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccCCHHH---HHHH
Confidence 456777788876 56777888877643 244543 34444455567777766667777766543221 1223
Q ss_pred hcccccccchHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhc-CchHHHHHHHHHH---HHCCCCCCcchhhhHHhhh
Q 039342 135 IKGEFDDESNWQMVEYVFDKLNCEG-YGLGMRFYNALLEALWCL-GLRERAARVLDEA---TKRGLFPELFRHNKLVWSV 209 (248)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m---~~~g~~p~~~t~~~li~~~ 209 (248)
+.+ +....+.....++++...... +++ .... .++.+.... -..+.|.+.+.+= ....+..+...+..++...
T Consensus 765 l~a-L~~~~d~~~l~~~L~~~l~~~~ir~-qd~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 765 RSA-LACSNEVWLLNRYLGYTLNPDLIRK-QDAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHH-HTTCCCHHHHHHHHHHTTCTTTSCG-GGHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHH
T ss_pred HHH-hCCCCCHHHHHHHHHHHhCCCCCch-hhHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 333 455566677777777765543 333 2222 334444432 2234454544331 1122223334455555333
Q ss_pred hhhccccchHHHHHHHHH
Q 039342 210 DVHRMWEGGAYTAISVWL 227 (248)
Q Consensus 210 ~~~~~~~~g~~~~~~~~~ 227 (248)
. ..+....+.+++..++
T Consensus 842 ~-~~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 842 T-RRFSSEFELQQLEQFK 858 (909)
T ss_dssp H-TTCCSHHHHHHHHHHH
T ss_pred H-HhcCCHHHHHHHHHHH
Confidence 2 4455555555554444
No 313
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=52.19 E-value=15 Score=20.21 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=17.2
Q ss_pred hHHHHHHHHHH-HCCCCcCHhhHHHHHHHH
Q 039342 75 DESKEQFQEIK-SSGILPSVMCYCMLLAVY 103 (248)
Q Consensus 75 ~~a~~~~~~m~-~~~~~p~~~~~~~li~~~ 103 (248)
++|.+.|.+|. +.++. +..||...|+..
T Consensus 3 eEae~aF~~lL~~~~V~-s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVD-STWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCC-SSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC-CCCcHHHHHHHh
Confidence 56666776665 34443 456777777766
No 314
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=51.97 E-value=44 Score=21.35 Aligned_cols=46 Identities=9% Similarity=-0.024 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHC
Q 039342 148 VEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKR 193 (248)
Q Consensus 148 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 193 (248)
...+|+.+.+..+.|++..--.-|..+...++++.|.++...+...
T Consensus 45 L~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 45 LALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 3346777777788777666556666677788999999999887653
No 315
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.82 E-value=46 Score=21.51 Aligned_cols=64 Identities=14% Similarity=0.309 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCc
Q 039342 62 EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR--WDDAYGLLDEMHTNRISN 126 (248)
Q Consensus 62 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~ 126 (248)
+.+|.-|...|+.++|.+.++++....+ -...+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4455555555666666665555542111 123334444444444321 344555555555554433
No 316
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.91 E-value=47 Score=21.43 Aligned_cols=75 Identities=17% Similarity=0.080 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhccccccc--chHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDE--SNWQMVEYVFDKLNCEGYGLGMRFYNALL 171 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~li 171 (248)
..+.++.-|...|+.++|.+.++++.... -........+...+.+. ...+.+..++..+...|+-+.......+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~--f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~ 85 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 85 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG--GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHH
Confidence 45678999999999999999999985221 12223333333324443 34577888888888887765544433333
No 317
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.72 E-value=25 Score=29.04 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=42.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH--HHHH-HHHHHHHhcCChhHHHHHHHHHHH
Q 039342 23 SDSFNAVIEAFRQGGRFEEAIKAYVEMEKV-RCDPNE--RTLE-AVLSVYCFAGLVDESKEQFQEIKS 86 (248)
Q Consensus 23 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~--~t~~-~ll~~~~~~g~~~~a~~~~~~m~~ 86 (248)
...+|.+++.|...+.++.|..+..+..-- .-.+|. .+|. -+-..+.-.+++.+|.+.+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 568999999999999999999999887410 001111 1222 122345567888899888877654
No 318
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=50.59 E-value=81 Score=24.03 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=14.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHcC
Q 039342 215 WEGGAYTAISVWLNKMYEMFMMG 237 (248)
Q Consensus 215 ~~~g~~~~~~~~~~~m~~~~~~~ 237 (248)
+..|..+.+..++.+-.+....+
T Consensus 297 a~~~~~~~v~~ll~~~~~~~~~~ 319 (364)
T 3ljn_A 297 AADPSKQEVLQLLQEKLDEVVRS 319 (364)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTC
T ss_pred hhccCHHHHHHHHHHHHHHHhhc
Confidence 45677777777776655544433
No 319
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.81 E-value=40 Score=24.30 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCC
Q 039342 147 MVEYVFDKLNCEGYGL-GMRFYNALLEALWCLGLRERAARVLDEATKRGLFPE 198 (248)
Q Consensus 147 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 198 (248)
....+|..|...|+-- -...|...-..+-..|++.+|.++|+.-.+.+-+|-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4445666666665432 244466666666677777777777777666666663
No 320
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=49.77 E-value=78 Score=23.58 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEM 49 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m 49 (248)
-=|.+++-|...|+++.|.++++.+
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rl 60 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKI 60 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHC
Confidence 4578899999999999999999975
No 321
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=49.34 E-value=32 Score=23.62 Aligned_cols=159 Identities=8% Similarity=0.009 Sum_probs=79.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhH---HHHhccccccc
Q 039342 67 VYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVT---GQMIKGEFDDE 142 (248)
Q Consensus 67 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~~l~~~~~~~ 142 (248)
..++.|+++....+++. +... +...-.+.+...+..|+.+.-.++.+.+.+.|..++...- +.+..++....
T Consensus 12 ~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~ 87 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG 87 (186)
T ss_dssp HHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 34567888876655543 2221 1111224455556677777667788888887765543211 11111111112
Q ss_pred chHHHHHHHHHHHHhcCCCCCHHHH--H-HHHHHHHhcCch-HHHHHHHHHHHH-CCCCCCcchh---hhHHhhhhhhcc
Q 039342 143 SNWQMVEYVFDKLNCEGYGLGMRFY--N-ALLEALWCLGLR-ERAARVLDEATK-RGLFPELFRH---NKLVWSVDVHRM 214 (248)
Q Consensus 143 ~~~~~a~~~~~~m~~~~~~p~~~~~--~-~li~~~~~~g~~-~~a~~~~~~m~~-~g~~p~~~t~---~~li~~~~~~~~ 214 (248)
.+.....++.+.+.+.|..++.... . +.+...+..+.. ..-..+++.+.+ .|..++.... +.+-++
T Consensus 88 ~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A------ 161 (186)
T 3t8k_A 88 NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV------ 161 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH------
T ss_pred cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH------
Confidence 2233445667777778876654321 1 233333333332 344567777777 7888765432 333322
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 039342 215 WEGGAYTAISVWLNKMYEMFM 235 (248)
Q Consensus 215 ~~~g~~~~~~~~~~~m~~~~~ 235 (248)
.+.|..+.+.-+.+.+++.++
T Consensus 162 ~~~~~~~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 162 KRCQKPIALKMMEDYIKKYNL 182 (186)
T ss_dssp HTTTCHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHHhc
Confidence 344555544444444444443
No 322
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=48.89 E-value=36 Score=21.91 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=24.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCH
Q 039342 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRW 109 (248)
Q Consensus 64 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 109 (248)
++..+...+..-.|.++++.+++.+...+..|----++.+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4444444555556666666666554444454444445555555543
No 323
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.76 E-value=28 Score=25.73 Aligned_cols=142 Identities=9% Similarity=-0.171 Sum_probs=64.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH---hhHHHHHHHHHh
Q 039342 29 VIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSV---MCYCMLLAVYAK 105 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~ 105 (248)
.+...+..|+.+-+..+++ .|..++...-.+.+...++.|+.+-+..+ .+.|..++. .-++.| ...+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L-~~A~~ 104 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTAL-YYAVD 104 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHH-HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHH-HHHHH
Confidence 3455566777765554443 44444332223455556667776644444 445554432 223333 33355
Q ss_pred cCCHHHHHHHHHHHHHCCCCchHHhH----HHHhcccccccchHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCch
Q 039342 106 SNRWDDAYGLLDEMHTNRISNIHQVT----GQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR-FYNALLEALWCLGLR 180 (248)
Q Consensus 106 ~~~~~~a~~~~~~m~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~ 180 (248)
.|+.+-+.-+++ .|..++.... +.+.. ....++.+ +.+.+.+.|..+... .-.+.+...+..|+.
T Consensus 105 ~g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~--A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~ 174 (285)
T 3kea_A 105 SGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYH--AVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHV 174 (285)
T ss_dssp TTCHHHHHHHHH----HCGGGGGCSSSGGGSHHHH--HHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHh----cCCCCCccCCCCCCCHHHH--HHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChH
Confidence 666655444444 3433321110 11111 11223333 334444454433111 233455555667777
Q ss_pred HHHHHHHHH
Q 039342 181 ERAARVLDE 189 (248)
Q Consensus 181 ~~a~~~~~~ 189 (248)
+-+..+++.
T Consensus 175 ~~v~~Ll~~ 183 (285)
T 3kea_A 175 DMMILLLDY 183 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 766666554
No 324
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=48.39 E-value=70 Score=22.65 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=24.6
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 039342 28 AVIEAFRQ---GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAG 72 (248)
Q Consensus 28 ~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 72 (248)
-+|+++.| ..|++.|+-.+.+|.+.| .|.-..=..++-+.-..|
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 34555544 356777777777777776 554444444444444444
No 325
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.17 E-value=73 Score=22.55 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=56.0
Q ss_pred CCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHH
Q 039342 53 RCDPNERTLEAVLSVYCF--AGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQ 129 (248)
Q Consensus 53 ~~~p~~~t~~~ll~~~~~--~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 129 (248)
..+-|..-...-|..--. .+....+.++|..|...|+-. -+.-|...-..+-..|++.+|..+|+.-.+.+-.|...
T Consensus 72 rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 72 TYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp GGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred cccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 466777665555544333 455778899999998776654 45668888888888899999999999888887777443
No 326
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=47.00 E-value=24 Score=23.17 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=21.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC
Q 039342 63 AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNR 108 (248)
Q Consensus 63 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 108 (248)
.++..+...+..-.|.++++.+++.+...+..|----++.+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444444455555555555554444444443334444444443
No 327
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.97 E-value=63 Score=21.70 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=46.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchH
Q 039342 53 RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIH 128 (248)
Q Consensus 53 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 128 (248)
..+-|..-...-|..--. .+.+.++|..|...|+-. -+.-|..--..+-..|++++|.++|+.-.+.+-.|..
T Consensus 63 ~YknD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 63 KYHNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp GGTTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 345566555544443322 234777888877766544 3455677777777778888888888877777766644
No 328
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=45.60 E-value=22 Score=23.44 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=9.5
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 039342 30 IEAFRQGGRFEEAIKAYV 47 (248)
Q Consensus 30 i~~~~~~~~~~~a~~~~~ 47 (248)
+...++.|+.+.+..+++
T Consensus 12 l~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHHTCHHHHHHHCC
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 334455566665555543
No 329
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=45.55 E-value=45 Score=25.53 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=46.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHH
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT--LEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM 98 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 98 (248)
.|..-++.| ...+..|+.+.+..++ +.|..++... -.+.|...+..|+.+-+.- +.+.|..++...-.+
T Consensus 16 ~d~~g~t~L-~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENMEKI-HVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKY----LASVGEVHSLWHGQK 86 (364)
T ss_dssp CCHHHHHHH-HHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHH----HHHHCCCCCCBTTBC
T ss_pred cCCCCCCHH-HHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHH----HHHCCCCccccCCCC
Confidence 344444444 4444566666554444 4455444321 1233444555666654443 333343443322223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 039342 99 LLAVYAKSNRWDDAYGLLDEMHTNRISN 126 (248)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~m~~~~~~~ 126 (248)
.+...+..|+.+-+..+++.....+..+
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCH
Confidence 3444456677777666666544444433
No 330
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=45.52 E-value=54 Score=21.07 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=7.3
Q ss_pred cCCHHHHHHHHHHHHHC
Q 039342 106 SNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 106 ~~~~~~a~~~~~~m~~~ 122 (248)
.+..-.|.++++.+.+.
T Consensus 23 ~~~~~sa~ei~~~l~~~ 39 (131)
T 2o03_A 23 LDDFRSAQELHDELRRR 39 (131)
T ss_dssp CCSCEEHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 33334444444444443
No 331
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.44 E-value=1.8e+02 Score=26.68 Aligned_cols=96 Identities=8% Similarity=-0.064 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-----------------------CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 039342 28 AVIEAFRQGGRFEEAIKAYVEMEKVRC-----------------------DPNERTLEAVLSVYCFAGLVDESKEQFQEI 84 (248)
Q Consensus 28 ~li~~~~~~~~~~~a~~~~~~m~~~~~-----------------------~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 84 (248)
.+-.+|...|++++|.+.|.+.-. |+ ..-..=|..++..+-+.+.++.+.++-...
T Consensus 847 l~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344556677888888888866411 11 011223566777777777777777666555
Q ss_pred HHC-CCC-cC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 039342 85 KSS-GIL-PS--VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRI 124 (248)
Q Consensus 85 ~~~-~~~-p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 124 (248)
.+. +-. ++ ...|..+.+++...|++++|...+-.+.+...
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 432 111 11 12577788888888888888888777665543
No 332
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=45.21 E-value=70 Score=21.73 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 039342 97 CMLLAVYAKSNRWDDAYGLLDEM 119 (248)
Q Consensus 97 ~~li~~~~~~~~~~~a~~~~~~m 119 (248)
..+|.-|...++.++|..-++++
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL 36 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDL 36 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34455555555555555555554
No 333
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=45.11 E-value=65 Score=21.34 Aligned_cols=65 Identities=6% Similarity=0.136 Sum_probs=45.7
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 039342 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVD 75 (248)
Q Consensus 10 ~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 75 (248)
+-+.+++.|.+++.. =..++..+...+..-.|.++++.+++.+...+..|.--.|..+...|-+.
T Consensus 14 ~~~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 334567788876544 34566667777778899999999988877778877777777777777553
No 334
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=44.31 E-value=74 Score=24.26 Aligned_cols=159 Identities=13% Similarity=0.090 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHH---HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHH
Q 039342 27 NAVIEAFRQGGRFEEAIKAYVEMEKV-----RCDPNERTLEAV---LSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCM 98 (248)
Q Consensus 27 ~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~t~~~l---l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 98 (248)
|.+...+.-.-+-++|..++..+... -+.|+....... +..+.+.-+ -++++.+.+.|+.|...++.=
T Consensus 153 ~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W 228 (331)
T 3qye_A 153 SFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPW 228 (331)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHH
Confidence 33333333334567888888887543 234553332222 222322222 367888888999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhccc---ccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 039342 99 LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGE---FDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALW 175 (248)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 175 (248)
++..+++.=.++.+.++++.+...|...-..+.-+++... .-...+.+.....+.... ...+......+++-..
T Consensus 229 ~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~---p~~~~~di~~li~~A~ 305 (331)
T 3qye_A 229 FLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTL---PNLGLVQMEKTINQVF 305 (331)
T ss_dssp HHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTT---TCCCHHHHHHHHHHHH
T ss_pred HHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC---CCCCHHHHHHHHHHHH
Confidence 9999999888999999999998888653333333333321 112235566666555422 2245555666665555
Q ss_pred hcCch---HHHHHHHHHHHH
Q 039342 176 CLGLR---ERAARVLDEATK 192 (248)
Q Consensus 176 ~~g~~---~~a~~~~~~m~~ 192 (248)
..... .+-..-|..+++
T Consensus 306 ~l~~s~~l~~~e~ey~~l~~ 325 (331)
T 3qye_A 306 EMDIAKQLQAYEVEYHVLQE 325 (331)
T ss_dssp HCCCHHHHHHHHHHHHHHHC
T ss_pred hCCchHHHHHHHHHHHHHHH
Confidence 44433 334444444443
No 335
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=43.44 E-value=84 Score=22.18 Aligned_cols=32 Identities=13% Similarity=0.030 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039342 37 GRFEEAIKAYVEMEKVRCDPNERTLEAVLSVY 68 (248)
Q Consensus 37 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 68 (248)
.|++.|+-.+.+|.+.|-.|....=..++-+.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555555555555555544443333333333
No 336
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=43.38 E-value=1.2e+02 Score=24.01 Aligned_cols=143 Identities=8% Similarity=-0.034 Sum_probs=81.6
Q ss_pred hHHHHHHHHHhcCC---HHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHH
Q 039342 25 SFNAVIEAFRQGGR---FEEAIKAYVEMEKVR----CDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYC 97 (248)
Q Consensus 25 ~y~~li~~~~~~~~---~~~a~~~~~~m~~~~----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 97 (248)
.-..++...|..|+ .+.|.+.|+...+.+ ++||.... +-+.+ .+.-+.-..+++..+.. .+..--.
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~---Vy~~~-~~~~~~~~~l~~~y~~s---~~~~ek~ 271 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA---VFAVG-AQSTEGWDFLYSKYQFS---LSSTEKS 271 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH---HHHHH-TTSHHHHHHHHHHHHHC---CCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee---EEeee-eCCHHHHHHHHHHHhcC---CCHHHHH
Confidence 44567778888887 467778888876542 66765432 22222 12234445566666654 3566678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CchHHhHHHHhcccccccchHHHHHHH----HHHHHhcCCCCCHHHHHHHHH
Q 039342 98 MLLAVYAKSNRWDDAYGLLDEMHTNRI-SNIHQVTGQMIKGEFDDESNWQMVEYV----FDKLNCEGYGLGMRFYNALLE 172 (248)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~li~ 172 (248)
.++.+++...+.....++++......+ ++..... ++.+........+.+.+. ++.+.+. +.+....+..+|.
T Consensus 272 ~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~--~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~ 348 (419)
T 3rjo_A 272 QIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQ--ILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVM 348 (419)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHH--HHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHH--HHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHH
Confidence 899999999999999999988876653 4433221 111211122222334333 3344433 2233456777777
Q ss_pred HHHhc
Q 039342 173 ALWCL 177 (248)
Q Consensus 173 ~~~~~ 177 (248)
.....
T Consensus 349 ~~~~~ 353 (419)
T 3rjo_A 349 GTTNQ 353 (419)
T ss_dssp HTTTT
T ss_pred HHhhc
Confidence 66554
No 337
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=42.93 E-value=52 Score=21.48 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=10.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 039342 99 LLAVYAKSNRWDDAYGLLDEMHTNR 123 (248)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~m~~~~ 123 (248)
++..+...+..-.|.++++.+.+.+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~ 43 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKG 43 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhC
Confidence 3333333333444444444444443
No 338
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=42.85 E-value=46 Score=25.10 Aligned_cols=14 Identities=7% Similarity=-0.088 Sum_probs=6.7
Q ss_pred HHHHHHHHCCCCcC
Q 039342 79 EQFQEIKSSGILPS 92 (248)
Q Consensus 79 ~~~~~m~~~~~~p~ 92 (248)
.+.+.+.+.|..++
T Consensus 220 ~i~~lLl~~gad~n 233 (337)
T 4g8k_A 220 AITHLLLDHGADVN 233 (337)
T ss_dssp HHHHHHHHTTCCTT
T ss_pred HHHHHHHHCCCCCC
Confidence 34444455555443
No 339
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.67 E-value=1.1e+02 Score=23.18 Aligned_cols=94 Identities=16% Similarity=0.053 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhccccccc--chHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDE--SNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 172 (248)
..+.++.-|...|+.++|.+.++++.... -........+.....+. ...+.+..++..+.+.|+-+.......+-+
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~--f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~ 245 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYER 245 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGG--GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCc--chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45688889999999999999999985321 11222222333224442 346778888999988887765555444444
Q ss_pred HHHhcCc----hHHHHHHHHHH
Q 039342 173 ALWCLGL----RERAARVLDEA 190 (248)
Q Consensus 173 ~~~~~g~----~~~a~~~~~~m 190 (248)
.+....+ ...|..++.++
T Consensus 246 vl~~l~Dl~lDiP~A~~~la~~ 267 (307)
T 2zu6_B 246 IYNEIPDINLDVPHSYSVLERF 267 (307)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHhccHhhcccccHHHHHHHH
Confidence 4443322 23455554444
No 340
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=41.41 E-value=2e+02 Score=25.98 Aligned_cols=161 Identities=7% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHHHCCCC--cCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhc
Q 039342 62 EAVLSVYCFAGL---VDESKEQFQEIKSSGIL--PSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIK 136 (248)
Q Consensus 62 ~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~ 136 (248)
..++...|+.|+ .+.|.+.|++..+.+-. +.+..-..+...-.+. .+.++.+.+.-...+...-...+.
T Consensus 752 ~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~Vyc~~~~~------~~~~~~l~~~y~~s~~~~ek~~ll 825 (967)
T 3se6_A 752 SALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVYSVGAQT------TAGWNYLLEQYELSMSSAEQNKIL 825 (967)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHTTS------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccCChhhhhHhHhhhhcc------HHHHHHHHHHHhccCCHHHHHHHH
Q ss_pred ccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH---HHHCCCCCCcchhhhHHhhhhhhc
Q 039342 137 GEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDE---ATKRGLFPELFRHNKLVWSVDVHR 213 (248)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~---m~~~g~~p~~~t~~~li~~~~~~~ 213 (248)
..+....+.....++++................+........-.+.|.+.+.+ -....+.++...+..++.... ..
T Consensus 826 ~aL~ct~d~~ll~~~L~~~l~~~~i~~qd~~~~~~~v~~n~~g~~~~w~f~~~nw~~i~~~~~~~~~~~~~~i~~~~-~~ 904 (967)
T 3se6_A 826 YALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTT-AH 904 (967)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCSSSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHTTT-TT
T ss_pred HHhcCCCCHHHHHHHHHHHhCcCcCcHhHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH-hc
Q ss_pred cccchHHHHHHHHHHH
Q 039342 214 MWEGGAYTAISVWLNK 229 (248)
Q Consensus 214 ~~~~g~~~~~~~~~~~ 229 (248)
+....+.+++..+++.
T Consensus 905 ~~t~~~l~~~~~f~~~ 920 (967)
T 3se6_A 905 FSSKDKLQEVKLFFES 920 (967)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
No 341
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=40.90 E-value=42 Score=25.77 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHc-----CCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCH
Q 039342 38 RFEEAIKAYVEMEKV-----RCDPNER---TLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRW 109 (248)
Q Consensus 38 ~~~~a~~~~~~m~~~-----~~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 109 (248)
+-++|...|..+... -+.++.. .+-..+..+.+.-+ -++++.+.+.|+.|...++.=++..+++.=.+
T Consensus 169 ~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 244 (334)
T 2qq8_A 169 DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENL----PKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPL 244 (334)
T ss_dssp CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCH
T ss_pred CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHC----HHHHHHHHHcCCCccchHHHHHHHHhcccCCH
Confidence 456777877776432 1233322 22223333333322 34677788889999888888888888888889
Q ss_pred HHHHHHHHHHHHCCC
Q 039342 110 DDAYGLLDEMHTNRI 124 (248)
Q Consensus 110 ~~a~~~~~~m~~~~~ 124 (248)
+.+.++++-+...|.
T Consensus 245 ~~~lriWD~~l~eg~ 259 (334)
T 2qq8_A 245 DLACRIWDVFCRDGE 259 (334)
T ss_dssp HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999887773
No 342
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=39.84 E-value=27 Score=22.44 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=24.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHH
Q 039342 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGL 115 (248)
Q Consensus 64 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 115 (248)
.|...+..++.+-|+++++.+.+.| +...|.+++-.|-..=++|-++++
T Consensus 38 AietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 38 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 4444445555555555555555443 444455555555444444444443
No 343
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=38.40 E-value=70 Score=22.77 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=9.7
Q ss_pred CHHhHHHHHHHHHhcCCHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEE 41 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~ 41 (248)
....|...+...+..|++.+
T Consensus 112 ~~~aY~~~l~~~a~~~~~~~ 131 (221)
T 3ibx_A 112 ANKSYTSYMLAEGFKGSIKE 131 (221)
T ss_dssp HHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHH
Confidence 34445555555555554443
No 344
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=37.84 E-value=76 Score=20.02 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 039342 3 LYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEME-KVRCDPNERTLEAVLSVYCFAGLVDESKEQF 81 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 81 (248)
++.+|+.-+++..+. .+|......++..+-.. ++.+.++.+... ..|+ ++.++..++....+.|-++.. +.|
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 345555555555432 24444444444444322 333444443332 2344 234455555555555555444 334
Q ss_pred HHHH
Q 039342 82 QEIK 85 (248)
Q Consensus 82 ~~m~ 85 (248)
..|.
T Consensus 76 ~~m~ 79 (119)
T 1wty_A 76 LEML 79 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 345
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.78 E-value=1.1e+02 Score=21.97 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHCCCCcCHh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 74 VDESKEQFQEIKSSGILPSVM-------CYCMLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 74 ~~~a~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
++.|..+|+.+.+.--.|... .--..+-.|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 788999999887542211111 1224455688899999999999988765
No 346
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.74 E-value=1.4e+02 Score=23.23 Aligned_cols=95 Identities=16% Similarity=0.047 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhccccccc--chHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDE--SNWQMVEYVFDKLNCEGYGLGMRFYNALLE 172 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 172 (248)
..+.+|.-|...++.++|.+.++++.... .........+.....+. ...+.+..++..+...|+-+.......+.+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~--fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTT--CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCc--chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 46888999999999999999999985321 22233333333224432 345678888888888888766665555555
Q ss_pred HHHhcCc----hHHHHHHHHHHH
Q 039342 173 ALWCLGL----RERAARVLDEAT 191 (248)
Q Consensus 173 ~~~~~g~----~~~a~~~~~~m~ 191 (248)
.+....+ ...|..++.++.
T Consensus 297 vl~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 297 IYNEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHhccHhhcccccHHHHHHHHH
Confidence 5444332 234555554443
No 347
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=37.37 E-value=76 Score=22.62 Aligned_cols=58 Identities=10% Similarity=-0.039 Sum_probs=37.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCH-------hhHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 039342 64 VLSVYCFAGLVDESKEQFQEIKSSGILPSV-------MCYCMLLAVYAK--SNRWDDAYGLLDEMHT 121 (248)
Q Consensus 64 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~--~~~~~~a~~~~~~m~~ 121 (248)
.|...++.|+.+.+..+++.+.+.|..++. .-.+.|..+... .|+.+-+..+++.-..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc
Confidence 455667789999988899888877665443 344455554432 2777777777765443
No 348
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=37.22 E-value=96 Score=21.03 Aligned_cols=27 Identities=11% Similarity=0.322 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEK 51 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~ 51 (248)
....+|.-|...++.++|...++++..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 345678888888888888888888763
No 349
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=36.68 E-value=68 Score=19.12 Aligned_cols=61 Identities=10% Similarity=-0.100 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHH
Q 039342 43 IKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDD 111 (248)
Q Consensus 43 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 111 (248)
..+++.+.+.|+ .+..-+..+-.. ....++|..+++.+...| ...|..++.++...+...-
T Consensus 25 ~~lld~L~~~~v-lt~~~~e~I~~~---~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 25 SYIMDHMISDGF-LTISEEEKVRNE---PTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHHHHTS-SCHHHHHHHHTS---SSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHcC---CChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHHH
Confidence 356666666665 444444444332 456777788887776553 5677777777776665443
No 350
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.26 E-value=62 Score=22.62 Aligned_cols=22 Identities=5% Similarity=-0.047 Sum_probs=9.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCC
Q 039342 67 VYCFAGLVDESKEQFQEIKSSG 88 (248)
Q Consensus 67 ~~~~~g~~~~a~~~~~~m~~~~ 88 (248)
..+..|+.+-+..+++.+.+.|
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcC
Confidence 3334444444444444444443
No 351
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=35.91 E-value=1.4e+02 Score=22.70 Aligned_cols=20 Identities=10% Similarity=-0.139 Sum_probs=15.0
Q ss_pred HHHhcCchHHHHHHHHHHHH
Q 039342 173 ALWCLGLRERAARVLDEATK 192 (248)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~ 192 (248)
-|...|+...|..+|+...+
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 35567889999999887653
No 352
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=35.55 E-value=30 Score=19.59 Aligned_cols=50 Identities=14% Similarity=0.021 Sum_probs=28.2
Q ss_pred HCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCCCCC
Q 039342 192 KRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGEDLP 241 (248)
Q Consensus 192 ~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~~~~ 241 (248)
++|+.|.+.+...-|-+.-...-.-.+++.+++.-++.++..|..|+.|.
T Consensus 3 ErGl~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ag~ip~AP~ 52 (74)
T 1avy_A 3 ESGLTNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQEAGYIPEAPR 52 (74)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred cccccchhcccccchhhhheeeccccchhhhhhhhhHHHHhcCCCCCCCC
Confidence 45666666666655544433333445567777777777777777776653
No 353
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=35.45 E-value=93 Score=20.36 Aligned_cols=67 Identities=9% Similarity=-0.083 Sum_probs=36.1
Q ss_pred CCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 039342 21 RNSDSFNAVIEAFRQGGR---FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSS 87 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 87 (248)
|++.+=-.+-.++.+..+ ...+..++.+..+.+-.-....+=-+--++.+.|+++.|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 454444444444555443 3456666666655441112233334555667777777777777776654
No 354
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=35.37 E-value=1.2e+02 Score=21.64 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=22.1
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 039342 26 FNAVIEAFRQ---GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYC 69 (248)
Q Consensus 26 y~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 69 (248)
+--+|+++.| .+|++.|+-.+.+|.+.|-.|.-..=..++-+.-
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsE 81 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACE 81 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3334555443 3556666666666666555554444444444443
No 355
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=35.24 E-value=34 Score=22.01 Aligned_cols=53 Identities=11% Similarity=-0.075 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 039342 25 SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQ 80 (248)
Q Consensus 25 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 80 (248)
.|--.|...+..++.+-|.++++.+.+.| +...|.+++..|...=++|-+.++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 45556666677777777777777777655 556677777777776666665554
No 356
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=35.17 E-value=1.2e+02 Score=21.74 Aligned_cols=64 Identities=8% Similarity=-0.170 Sum_probs=31.6
Q ss_pred HHHHHHhcCchHHHHHHHHHHHH---CCCCCCcc---hhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCC
Q 039342 170 LLEALWCLGLRERAARVLDEATK---RGLFPELF---RHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGE 238 (248)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~---t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~ 238 (248)
.+...+..|+.+-+ +.+.+ .|..++.. -.+.|.++.. .+....+..+...++++.+.+.|..++
T Consensus 151 pL~~A~~~g~~~~v----~~Ll~~~~~gad~~~~d~~g~tpLh~A~~-~~~~~~~~~~~~~~~v~~Ll~~ga~~n 220 (273)
T 2pnn_A 151 PLSLAACTNQLAIV----KFLLQNSWQPADISARDSVGNTVLHALVE-VADNTVDNTKFVTSMYNEILILGAKLH 220 (273)
T ss_dssp HHHHHHHTTCHHHH----HHHHHCSSCCCCTTCCCTTSCCHHHHHHH-HCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHH----HHHHhcccCCCCceeeCCCCCcHHHHHHH-ccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence 34444556665543 34444 55555443 2344443332 222223344444567777777777654
No 357
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=34.53 E-value=69 Score=22.31 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=43.0
Q ss_pred CchHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHH
Q 039342 2 GLYKECQAILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNE---RTLEAVLSVYCFAGLVDESK 78 (248)
Q Consensus 2 g~~~~a~~~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~ 78 (248)
|+++....++..-...--.++...++. +...+..|+.+-+ +.+.+.|..++. .-++ .+...++.|+.+
T Consensus 17 g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~--- 87 (231)
T 3aji_A 17 GKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIV----EFLLQLGVPVNDKDDAGWS-PLHIAASAGXDE--- 87 (231)
T ss_dssp TCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCC-HHHHHHHHTCHH---
T ss_pred CCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCC-HHHHHHHcCHHH---
Confidence 455555555554322111123333333 3344555665443 344445554432 1222 333344455554
Q ss_pred HHHHHHHHCCCCcCH---hhHHHHHHHHHhcCCHHHHHHH
Q 039342 79 EQFQEIKSSGILPSV---MCYCMLLAVYAKSNRWDDAYGL 115 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~ 115 (248)
+++.+.+.|..++. .-.+ .+...+..|+.+-+..+
T Consensus 88 -~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~L 125 (231)
T 3aji_A 88 -IVKALLVKGAHVNAVNQNGCT-PLHYAASKNRHEIAVML 125 (231)
T ss_dssp -HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHH
T ss_pred -HHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHH
Confidence 34444455544432 2222 33333455665544333
No 358
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=34.32 E-value=1.5e+02 Score=22.49 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=84.8
Q ss_pred ChhHHHHHHHHHHHC-C----CCcCHhhHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccch
Q 039342 73 LVDESKEQFQEIKSS-G----ILPSVMCYCM---LLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESN 144 (248)
Q Consensus 73 ~~~~a~~~~~~m~~~-~----~~p~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (248)
+-+.|..+|..+.+. + ..|+...... .+..+.+.-+ -++++.+.+.|+.|....+..++.- +...=.
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~l-F~~~lp 238 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTM-FASQFP 238 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHST-TTTTSC
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHH-hhhhCC
Confidence 356788888887643 2 2344322221 2223333222 2566777788999988888887776 555555
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHH----HHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHH
Q 039342 145 WQMVEYVFDKLNCEGYGLGMRFYNALLEA----LWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAY 220 (248)
Q Consensus 145 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~----~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~ 220 (248)
++.+.++++.+...|...-....-+++.. ..+..+.++..+++...... .+......++..... +--..+.
T Consensus 239 ~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~---~~~~di~~li~~A~~--l~~s~~l 313 (331)
T 3qye_A 239 LGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN---LGLVQMEKTINQVFE--MDIAKQL 313 (331)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC---CCHHHHHHHHHHHHH--CCCHHHH
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC---CCHHHHHHHHHHHHh--CCchHHH
Confidence 89999999999988866322222333332 23345677777777652211 222334445533321 1123566
Q ss_pred HHHHHHHHHHHHHHHc
Q 039342 221 TAISVWLNKMYEMFMM 236 (248)
Q Consensus 221 ~~~~~~~~~m~~~~~~ 236 (248)
.+.+.-+..|++.-++
T Consensus 314 ~~~e~ey~~l~~~~~~ 329 (331)
T 3qye_A 314 QAYEVEYHVLQEELID 329 (331)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6666666666665443
No 359
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.07 E-value=79 Score=19.13 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 039342 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARV 186 (248)
Q Consensus 143 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 186 (248)
...+.+.++++.+...|.. .|..++.++...|+...|..+
T Consensus 51 t~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHHHHHHH
Confidence 4668888888888887754 588888888777776666544
No 360
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=33.74 E-value=1.4e+02 Score=21.80 Aligned_cols=21 Identities=5% Similarity=-0.135 Sum_probs=12.0
Q ss_pred CHHhHHHHHHHHHhc-CCHHHH
Q 039342 22 NSDSFNAVIEAFRQG-GRFEEA 42 (248)
Q Consensus 22 ~~~~y~~li~~~~~~-~~~~~a 42 (248)
....|...|...+.. |++.++
T Consensus 128 ~~~aYt~~ll~~a~~~g~~~~~ 149 (248)
T 3no6_A 128 SGDHYIKHMYFNAFARENAAFT 149 (248)
T ss_dssp HHHHHHHHHHHHHHHCSSTHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHH
Confidence 345566666666655 665544
No 361
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.66 E-value=1.2e+02 Score=21.10 Aligned_cols=195 Identities=8% Similarity=-0.099 Sum_probs=89.2
Q ss_pred HHHHHHHHcCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHH
Q 039342 9 AILSRMSESGVARNSD--SFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERT--LEAVLSVYCFAGLVDESKEQFQEI 84 (248)
Q Consensus 9 ~~~~~m~~~g~~~~~~--~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~m 84 (248)
++++.+.+.|..++.. .-.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-+ +.+
T Consensus 25 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----~~L 96 (237)
T 3b7b_A 25 DICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVV----QYL 96 (237)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHH----HHH
T ss_pred HHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHH----HHH
Confidence 3455555566544332 112344555566776544 44445555443211 12234444556665544 444
Q ss_pred HHCC-CCcC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHh---HHHHhcccccccchHHHHHHHHHHHHh
Q 039342 85 KSSG-ILPS---VMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV---TGQMIKGEFDDESNWQMVEYVFDKLNC 157 (248)
Q Consensus 85 ~~~~-~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~ 157 (248)
.+.| ..++ ..-.+. +...++.|+.+- ++.+.+.|..++... .+.+.. ....++. ++++.+.+
T Consensus 97 l~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~--A~~~~~~----~~~~~Ll~ 165 (237)
T 3b7b_A 97 LSNGQMDVNCQDDGGWTP-MIWATEYKHVDL----VKLLLSKGSDINIRDNEENICLHW--AAFSGCV----DIAEILLA 165 (237)
T ss_dssp HTTTCCCTTCCCTTSCCH-HHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHH--HHHHCCH----HHHHHHHT
T ss_pred HhCCCCCcccCCCCCCCH-HHHHHHcCCHHH----HHHHHHCCCCCCccCCCCCCHHHH--HHHCCCH----HHHHHHHH
Confidence 4443 2222 222223 333445566544 344444454332110 000111 1112333 34555556
Q ss_pred cCCCCCHHH--HHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcch---hhhHHhhhhhhccccchHHHHHHHHHHHHHH
Q 039342 158 EGYGLGMRF--YNALLEALWCLGLRERAARVLDEATKRGLFPELFR---HNKLVWSVDVHRMWEGGAYTAISVWLNKMYE 232 (248)
Q Consensus 158 ~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~ 232 (248)
.|..++... -.+.+...++.|+.+-+ +.+.+.|..++... .+.+ .--+..|+...+.++++.+++
T Consensus 166 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l------~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 166 AKCDLHAVNIHGDSPLHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPL------QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHH------HHSCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCCCCCCHHHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHH------HHHHHHHHHHHHHHHHHHhhc
Confidence 665554321 12345555667776544 44445676665432 2333 233567788888888877765
No 362
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=33.52 E-value=1.3e+02 Score=21.47 Aligned_cols=111 Identities=8% Similarity=0.017 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHH
Q 039342 74 VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFD 153 (248)
Q Consensus 74 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 153 (248)
.+.+..+++.+.+.|+.-|..--...+....+.+.+ ....+-.++...|+.++ +....+.. +......+.|..+.+
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~~--~I~~al~~-~~~~~e~e~a~~l~~ 167 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGES--DIDDALTQ-FTPEVQAELAKKLAL 167 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCHH--HHHHHGGG-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCHH--HHHHHHHh-CCHHHHHHHHHHHHH
Confidence 456778888888888876655556677776653222 45677888889997543 34444443 222233445555555
Q ss_pred HHHhc-CCCCCHHHHHHHHHHHHhcC-chHHHHHHHH
Q 039342 154 KLNCE-GYGLGMRFYNALLEALWCLG-LRERAARVLD 188 (248)
Q Consensus 154 ~m~~~-~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~ 188 (248)
.-... .-.++.....-+++.+.+.| .++.+..+++
T Consensus 168 Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~ 204 (221)
T 3d5l_A 168 KLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKD 204 (221)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTT
T ss_pred HHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 43322 11222344556666666666 3444444443
No 363
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=32.82 E-value=1.2e+02 Score=20.79 Aligned_cols=113 Identities=9% Similarity=0.018 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHH
Q 039342 75 DESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDK 154 (248)
Q Consensus 75 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 154 (248)
+.+..+++.+.+.|+.-|..--...+....+.|.+ ....+-.++...|+.+. ++...+.. +......+.|..+.+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~~--~I~~al~~-~~~~de~e~a~~l~~K 125 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDDN--IAEDALIL-YTDKLQVEKGVTLAEK 125 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCHH--HHHHHHTT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCHH--HHHHHHHh-CCchhHHHHHHHHHHH
Confidence 45666777777777765555555666666655432 33566677777776433 33334433 2222334455555544
Q ss_pred HH-hcCCCCCHHHHHHHHHHHHhcC-chHHHHHHHHHHH
Q 039342 155 LN-CEGYGLGMRFYNALLEALWCLG-LRERAARVLDEAT 191 (248)
Q Consensus 155 m~-~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 191 (248)
-. ...-.++.....-++..+.+.| .++.+..+++.+.
T Consensus 126 k~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 126 LANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 22 2222222333445555666665 4455555555543
No 364
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=32.64 E-value=1.7e+02 Score=22.41 Aligned_cols=44 Identities=2% Similarity=0.104 Sum_probs=30.3
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 039342 10 ILSRMSESGVARNSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVR 53 (248)
Q Consensus 10 ~~~~m~~~g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~ 53 (248)
++..+.+.|+.|...++.=++..|++.=.++.+..+|+.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 44455566777777777777777777667777777777776665
No 365
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=32.20 E-value=2.3e+02 Score=23.83 Aligned_cols=25 Identities=8% Similarity=-0.029 Sum_probs=11.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 039342 95 CYCMLLAVYAKSNRWDDAYGLLDEM 119 (248)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~m 119 (248)
--.-++..|.+.|-.+.|.++++.+
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~ 542 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTL 542 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHH
Confidence 3444444444444444444444444
No 366
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=32.10 E-value=81 Score=23.15 Aligned_cols=81 Identities=12% Similarity=0.073 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHhcC---------ChhHHHHHHHHHHHCCCCc-CHhhHHHHHH
Q 039342 39 FEEAIKAYVEMEKVRC-------DPNERTLEAVLSVYCFAG---------LVDESKEQFQEIKSSGILP-SVMCYCMLLA 101 (248)
Q Consensus 39 ~~~a~~~~~~m~~~~~-------~p~~~t~~~ll~~~~~~g---------~~~~a~~~~~~m~~~~~~p-~~~~~~~li~ 101 (248)
.+.|..++.+|--..+ .-...-|..+..+|++.| +.+...++++...+.|++- =+..|+++|+
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIID 249 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIID 249 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceecc
Confidence 4667777777743321 123455677777777766 3455555665555555432 2345555555
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 039342 102 VYAKSNRWDDAYGLLDEM 119 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m 119 (248)
--.-.-+++++.++|..+
T Consensus 250 k~TG~TrpedV~~ll~~~ 267 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVV 267 (275)
T ss_dssp TTTCCBCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 444444555555555544
No 367
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.00 E-value=1.1e+02 Score=20.37 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCch
Q 039342 73 LVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNI 127 (248)
Q Consensus 73 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 127 (248)
..+.+..+++.+.+.|+.-|..--...+....+.| .....+-.++...|+.++
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~ 97 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE 97 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH
Confidence 34566778888888887755555566777776644 345677888888887654
No 368
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=31.86 E-value=97 Score=22.62 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=11.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHH
Q 039342 22 NSDSFNAVIEAFRQGGRFEEAIKAY 46 (248)
Q Consensus 22 ~~~~y~~li~~~~~~~~~~~a~~~~ 46 (248)
|..-...|+.++ ..|+.+.+..++
T Consensus 8 d~~~~~~L~~A~-~~G~~~~v~~LL 31 (269)
T 4b93_B 8 DYREVEKLLRAV-ADGDLEMVRYLL 31 (269)
T ss_dssp CCHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred CccchhHHHHHH-HcCCHHHHHHHH
Confidence 444445555543 456665544443
No 369
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.78 E-value=1e+02 Score=19.65 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=23.5
Q ss_pred HHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039342 80 QFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHT 121 (248)
Q Consensus 80 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 121 (248)
+|+.+....+.|++..--.-|......++++.|..+.-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555544444444445566677777776666654
No 370
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.89 E-value=1.3e+02 Score=20.51 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=51.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCchHHh
Q 039342 53 RCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILP-SVMCYCMLLAVYAKSNRWDDAYGLLDEMHTNRISNIHQV 130 (248)
Q Consensus 53 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 130 (248)
..+-|..-...-|..--.. +...++|..|...|+-. -+.-|..--..+-..|++.+|.++|..-.+.+-.|....
T Consensus 58 ~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 58 RYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp GGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred hhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 4566776666655433333 44677888888776654 345677777777888888888888888888877775543
No 371
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.72 E-value=66 Score=17.20 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=18.1
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHHHHhcCC--HHHHHHHHHHH
Q 039342 79 EQFQEIKSSGILPSVMCYCMLLAVYAKSNR--WDDAYGLLDEM 119 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m 119 (248)
+.++.+.+.|+.+. ....+..+.|. ++.|++.+.+|
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 44555555555442 22333444444 66666666655
No 372
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=29.81 E-value=13 Score=24.30 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 039342 29 VIEAFRQGGRFEEAIKAYVE 48 (248)
Q Consensus 29 li~~~~~~~~~~~a~~~~~~ 48 (248)
.+...++.|+.+.+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHh
Confidence 34445566666666666655
No 373
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=29.74 E-value=1.5e+02 Score=21.11 Aligned_cols=22 Identities=5% Similarity=-0.102 Sum_probs=10.9
Q ss_pred CCHHhHHHHHHHHHhc-CCHHHH
Q 039342 21 RNSDSFNAVIEAFRQG-GRFEEA 42 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~-~~~~~a 42 (248)
|....|...+...+.. |++.++
T Consensus 108 p~~~aY~~~l~~~a~~~~~~~~~ 130 (229)
T 4fn6_A 108 PSGDHYIKHMYFQAHSRENAIYT 130 (229)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCHHHH
Confidence 3344555555555555 554443
No 374
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=29.56 E-value=48 Score=21.19 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=35.1
Q ss_pred ccchHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh---cCchHHHHHHHHHHHHCCCCC
Q 039342 141 DESNWQMVEYVFDKLNCEGYG-LGMRFYNALLEALWC---LGLRERAARVLDEATKRGLFP 197 (248)
Q Consensus 141 ~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p 197 (248)
....+++|.+.+..|++.-+. -.+..||..|..+-. .++. .++|..+.+.++-|
T Consensus 39 ~~~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lgL 96 (120)
T 1q2z_A 39 ETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGITL 96 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCCS
T ss_pred ccchHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcCC
Confidence 345678888888888776443 267788988887643 3333 45566677666654
No 375
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=29.31 E-value=1.1e+02 Score=22.85 Aligned_cols=106 Identities=9% Similarity=-0.041 Sum_probs=53.1
Q ss_pred HHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCcC---HhhHHHHHHHHHhcCCHHHHHHHHHH
Q 039342 44 KAYVEMEKVRCDPNERTL--EAVLSVYCFAGLVDESKEQFQEIKSSGILPS---VMCYCMLLAVYAKSNRWDDAYGLLDE 118 (248)
Q Consensus 44 ~~~~~m~~~~~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~ 118 (248)
.+.+.+.+.|..++.... .+.+...++.|..+.+..+++. .|..++ ..-.+.|..| ++.|+.+ +.+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHH
Confidence 444556677776654221 2345556677887766555432 233332 2223344444 4556654 4455
Q ss_pred HHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHH
Q 039342 119 MHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMR 165 (248)
Q Consensus 119 m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 165 (248)
+.+.|..++..+ .+..+ ...++. ++.+.+.+.|-.||..
T Consensus 292 Ll~~GAd~n~~~--~L~~A--~~~~~~----~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 292 LCKRGASTDCGD--LVMTA--RRNYDH----SLVKVLLSHGAKEDFH 330 (337)
T ss_dssp HHTTSCSSTTCC--HHHHH--HHTTCH----HHHHHHHHTTCCC---
T ss_pred HHHCCCCCCCCC--HHHHH--HHcCCH----HHHHHHHHCcCCCCCC
Confidence 566776665543 22222 223443 3556677788777653
No 376
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=29.14 E-value=1.6e+02 Score=24.73 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=45.3
Q ss_pred HHhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHH
Q 039342 23 SDSFNAVIEAFRQ--GGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLL 100 (248)
Q Consensus 23 ~~~y~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 100 (248)
...|..-|..+.. ..+.+.......++..+=---+..--.-++..|.+.|..+.|.++++.+-+.-+. +...| .-+
T Consensus 479 ~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL 556 (570)
T 3f3f_C 479 KELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESI 556 (570)
T ss_dssp TTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------
T ss_pred CcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHH
Confidence 3455666665554 3456667777777765432234566778999999999999999999988765333 44456 556
Q ss_pred HHHHhcCCHHHH
Q 039342 101 AVYAKSNRWDDA 112 (248)
Q Consensus 101 ~~~~~~~~~~~a 112 (248)
..|+|+|+++.+
T Consensus 557 ~~f~rA~~~~~V 568 (570)
T 3f3f_C 557 ANFSRAGKYELV 568 (570)
T ss_dssp ------------
T ss_pred HHHHHcCChhhc
Confidence 678888887765
No 377
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=28.28 E-value=1.6e+02 Score=22.58 Aligned_cols=112 Identities=7% Similarity=0.019 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHc---CCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHH
Q 039342 40 EEAIKAYVEMEKV---RCDPNE---RTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAY 113 (248)
Q Consensus 40 ~~a~~~~~~m~~~---~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 113 (248)
+.|...|..+.+. .+.++. ...-..+..+.+.-+ -++++.+.+.|+.|...++.=++..+++.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~d----P~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRID----EQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 4566666666432 233322 122223333333322 357777888899998888888999999888899999
Q ss_pred HHHHHHHHCCCCchH---HhHHHHhccc---ccccchHHHHHHHHHHH
Q 039342 114 GLLDEMHTNRISNIH---QVTGQMIKGE---FDDESNWQMVEYVFDKL 155 (248)
Q Consensus 114 ~~~~~m~~~~~~~~~---~~~~~~l~~~---~~~~~~~~~a~~~~~~m 155 (248)
++++.+...|..... .+.-+++... .-...+++.+..+++.+
T Consensus 265 rlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~ 312 (345)
T 2qfz_A 265 RLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312 (345)
T ss_dssp HHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSC
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcC
Confidence 999999887754321 1222222221 11235667776666654
No 378
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=28.25 E-value=78 Score=22.95 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHhcC---------ChhHHHHHHHHHHHCCCCc-CHhhHHHHHH
Q 039342 39 FEEAIKAYVEMEKVRC-------DPNERTLEAVLSVYCFAG---------LVDESKEQFQEIKSSGILP-SVMCYCMLLA 101 (248)
Q Consensus 39 ~~~a~~~~~~m~~~~~-------~p~~~t~~~ll~~~~~~g---------~~~~a~~~~~~m~~~~~~p-~~~~~~~li~ 101 (248)
.+.|..++.+|--+.+ .-...-|..+..+|.+.| +.+...++++...+.|++- =++.|+++|+
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 4667777777643321 123455667777777766 3445555555555555432 2345555555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 039342 102 VYAKSNRWDDAYGLLDEMH 120 (248)
Q Consensus 102 ~~~~~~~~~~a~~~~~~m~ 120 (248)
--.-.-+++++.++|..+.
T Consensus 227 k~TG~TrpedV~~ll~~~K 245 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTK 245 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 4444445555555555443
No 379
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=28.15 E-value=1.1e+02 Score=20.21 Aligned_cols=16 Identities=6% Similarity=-0.240 Sum_probs=8.3
Q ss_pred HHHhcCCHHHHHHHHH
Q 039342 32 AFRQGGRFEEAIKAYV 47 (248)
Q Consensus 32 ~~~~~~~~~~a~~~~~ 47 (248)
..++.|+.+.+..+++
T Consensus 11 ~A~~~g~~~~v~~ll~ 26 (179)
T 3f6q_A 11 TQCREGNAVAVRLWLD 26 (179)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3445566655555444
No 380
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=27.88 E-value=4e+02 Score=25.28 Aligned_cols=90 Identities=8% Similarity=-0.088 Sum_probs=53.7
Q ss_pred chHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHCCCCCCcchhhhHHhhhhhhccccchHHHH
Q 039342 143 SNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLGLRERAARVLDEATKRGLFPELFRHNKLVWSVDVHRMWEGGAYTA 222 (248)
Q Consensus 143 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~ 222 (248)
...+...+.|.++.+.=-.-|.......+.--.+.+++-.|.+++.++.+.. |....|..++. -+ +.=.++.
T Consensus 1263 ~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~-----~~-~~l~w~h 1334 (1354)
T 3lxu_X 1263 DSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAA-----IN-GALGHEH 1334 (1354)
T ss_dssp GGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHH-----HH-HHHSCHH
T ss_pred hHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHH-----HH-HHcCCHH
Confidence 3456777788888776222244433333444446899999999999998763 66666655552 22 2223444
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 039342 223 ISVWLNKMYEMFMMGEDL 240 (248)
Q Consensus 223 ~~~~~~~m~~~~~~~~~~ 240 (248)
...+.+.+.-....+...
T Consensus 1335 ~~~~~~~~~~~~~p~~~~ 1352 (1354)
T 3lxu_X 1335 IRTVINRMMITAFPSSFR 1352 (1354)
T ss_dssp HHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHhhhhhhCcccCC
Confidence 555666666655555443
No 381
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=27.33 E-value=1.5e+02 Score=23.34 Aligned_cols=71 Identities=11% Similarity=-0.000 Sum_probs=0.0
Q ss_pred cCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCC
Q 039342 91 PSVMCYCMLLAVYAKSNR--WDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLG 163 (248)
Q Consensus 91 p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 163 (248)
++..+|..+|.-.....+ .+++..+++.+.+.. .+..-...++.+...+.-..++...+.+.|.+.+...+
T Consensus 21 ~~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~--~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~~v~ 93 (377)
T 3r88_A 21 ASVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGN--ARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLP 93 (377)
T ss_dssp ---CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCC
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCCcCC
No 382
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=26.82 E-value=1.6e+02 Score=22.48 Aligned_cols=111 Identities=5% Similarity=-0.017 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHc---CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 039342 5 KECQAILSRMSES---GVAR---NSDSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESK 78 (248)
Q Consensus 5 ~~a~~~~~~m~~~---g~~~---~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 78 (248)
+.|.-+|..+.+. ...+ .....-..+..+.+.-++ ++++.+.+.|+.|...++.-++..+.+.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP----~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDE----QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 4555666665442 1122 222333344444444444 47777888899999999999999999988999999
Q ss_pred HHHHHHHHCCCCcCHh---hHHHHHHHH----HhcCCHHHHHHHHHHH
Q 039342 79 EQFQEIKSSGILPSVM---CYCMLLAVY----AKSNRWDDAYGLLDEM 119 (248)
Q Consensus 79 ~~~~~m~~~~~~p~~~---~~~~li~~~----~~~~~~~~a~~~~~~m 119 (248)
.+|+.+...|...... +.-+++..+ ....++++.+.+++.+
T Consensus 265 rlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~ 312 (345)
T 2qfz_A 265 RLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312 (345)
T ss_dssp HHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSC
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcC
Confidence 9999998776443321 222333332 2357888888888754
No 383
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=26.79 E-value=63 Score=17.60 Aligned_cols=15 Identities=7% Similarity=0.231 Sum_probs=9.9
Q ss_pred chHHHHHHHHHHHHc
Q 039342 3 LYKECQAILSRMSES 17 (248)
Q Consensus 3 ~~~~a~~~~~~m~~~ 17 (248)
|++.|...|.++...
T Consensus 35 d~~~A~~~F~~l~~~ 49 (59)
T 1oai_A 35 DYTRSAQAFTHLKAK 49 (59)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 566777777776643
No 384
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=26.11 E-value=1.5e+02 Score=19.87 Aligned_cols=129 Identities=9% Similarity=0.074 Sum_probs=70.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHH
Q 039342 24 DSFNAVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVY 103 (248)
Q Consensus 24 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 103 (248)
..++..+..++....... ++-+.+.+.|+.+ +.+..+++.+.+.|+.-|..--...+...
T Consensus 18 ~a~~~Al~~Ls~r~~s~~--EL~~KL~~kg~~~------------------e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~ 77 (162)
T 3dfg_A 18 TPVQRALGLLVHREHSKK--ELNRKLQARGIEP------------------EAAQAAVERLAGEGWQDDVRFAASVVRNR 77 (162)
T ss_dssp CHHHHHHHHHHHSCCCHH--HHHHHHHHTTCCH------------------HHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhchhhhHH--HHHHHHHhcCCCH------------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 457777777777654433 5666777777643 34566777777777764444444555655
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 039342 104 AKSNRWDDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEALWCLG 178 (248)
Q Consensus 104 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 178 (248)
.+.| ..-..+-.++...|+.. .++...+.. +. ....+.+..+++.-.......+.....-++..+.+.|
T Consensus 78 ~~~~--~G~~~I~~eL~~KGI~~--~~I~~al~~-~~-~de~e~a~~l~~Kk~~~~~~~~~~~k~K~~~~L~rrG 146 (162)
T 3dfg_A 78 ASSG--YGPLHIRAELGTHGLDS--DAVSAAMAT-FE-GDWTENALDLIRRRFGEDGPVDLAQRRKAADLLARRG 146 (162)
T ss_dssp HTTT--CCHHHHHHHHHHTTCCH--HHHHHHHTT-CC-SCHHHHHHHHHHHHHCTTCCCSHHHHHHHHHHHHHTT
T ss_pred HHcc--ccHHHHHHHHHHcCCCH--HHHHHHHHh-Cc-HhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Confidence 5433 34467778888888743 344445544 22 2334555555543111111223333444444444444
No 385
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=25.60 E-value=2.2e+02 Score=21.65 Aligned_cols=21 Identities=10% Similarity=-0.131 Sum_probs=14.6
Q ss_pred cccchHHHHHHHHHHHHHHHH
Q 039342 214 MWEGGAYTAISVWLNKMYEMF 234 (248)
Q Consensus 214 ~~~~g~~~~~~~~~~~m~~~~ 234 (248)
|...|+...|..+++.+.+.-
T Consensus 198 yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHH
Confidence 445677777888888776654
No 386
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=25.59 E-value=2.1e+02 Score=21.42 Aligned_cols=149 Identities=11% Similarity=0.094 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHc-CC----CCCHHHHH---HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCH
Q 039342 38 RFEEAIKAYVEMEKV-RC----DPNERTLE---AVLSVYCFAGLVDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRW 109 (248)
Q Consensus 38 ~~~~a~~~~~~m~~~-~~----~p~~~t~~---~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 109 (248)
+-++|..++..+... ++ .|+..... ..+..+.+.-+ -++++.+.+.|+.|...++.=++..+++.=.+
T Consensus 130 ~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 205 (310)
T 3hzj_A 130 PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQL----PDLHSHFSDLNLEAHMYASQWFLTLFTAKFPL 205 (310)
T ss_dssp CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCH
T ss_pred CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhC----hHHHHHHHHcCCChHHHHHHHHHHHHhccCCH
Confidence 567788888887543 22 12211111 12222332222 35677778889999999999999999988889
Q ss_pred HHHHHHHHHHHHCCCCchHHhHHHHhccc---ccccchHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhc----CchH
Q 039342 110 DDAYGLLDEMHTNRISNIHQVTGQMIKGE---FDDESNWQMVEYVFD-KLNCEGYGLGMRFYNALLEALWCL----GLRE 181 (248)
Q Consensus 110 ~~a~~~~~~m~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~----g~~~ 181 (248)
+.+.++++-+...|...-..+.-+++... ... .+.+.+...+. .+... .. +......+++..... ..++
T Consensus 206 ~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~-~d~~~~l~~l~~~lp~~-~~-~~~d~~~ll~~A~~l~~~~~~l~ 282 (310)
T 3hzj_A 206 CMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQ-ADFEGALKFFRVQLPKR-YR-AEENARRLMEQACNIKVPTKKLK 282 (310)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHT-CCHHHHHHHHHTHHHHT-TC-SHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHhCccc-cc-ccccHHHHHHHHHhcCCCHHHHH
Confidence 99999999998887543322222333211 111 25677777775 34332 22 222334444433332 3344
Q ss_pred HHHHHHHHHHHC
Q 039342 182 RAARVLDEATKR 193 (248)
Q Consensus 182 ~a~~~~~~m~~~ 193 (248)
+-.+-|..+.+.
T Consensus 283 ~~~~ey~~~~~~ 294 (310)
T 3hzj_A 283 KYEKEYQTMRES 294 (310)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 387
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=24.99 E-value=2e+02 Score=21.39 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=45.0
Q ss_pred cccccchHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 039342 138 EFDDESNWQMVEYVFDKLNCE-GYGLGMRFYNALLEALWCLGLRERAARVLDEAT 191 (248)
Q Consensus 138 ~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 191 (248)
.|....++..+..++..|... .-.|+......++++|.+.-+-.+|.+.+....
T Consensus 182 iC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 182 ICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp HTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred HHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 366667888888888888775 456899999999999999999999999988753
No 388
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=24.73 E-value=62 Score=24.32 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=17.5
Q ss_pred CchHHHHHHHHHHHHCCCCCCcchhh
Q 039342 178 GLRERAARVLDEATKRGLFPELFRHN 203 (248)
Q Consensus 178 g~~~~a~~~~~~m~~~g~~p~~~t~~ 203 (248)
+..+.+.+++..|.+.|++|....|+
T Consensus 127 n~~~~~~~~~~~~~e~Gv~pE~e~fd 152 (282)
T 2y7e_A 127 NHPADIIRLAEAFKQYNVVPEVEVYE 152 (282)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEEEC
Confidence 34566777777777777777655554
No 389
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=24.09 E-value=2e+02 Score=20.51 Aligned_cols=51 Identities=10% Similarity=0.182 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCC
Q 039342 110 DDAYGLLDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGL 162 (248)
Q Consensus 110 ~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 162 (248)
+.+..+++.+.+.|..-|.......+.......+ ..-..+..++...|+.+
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~--~G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDL--KGPGIIRQHLRQKGIGE 143 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHcCCCH
Confidence 3455666666666666555555555554322111 12334555666677654
No 390
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=23.79 E-value=88 Score=16.33 Aligned_cols=15 Identities=7% Similarity=0.144 Sum_probs=8.6
Q ss_pred hcCCHHHHHHHHHHH
Q 039342 35 QGGRFEEAIKAYVEM 49 (248)
Q Consensus 35 ~~~~~~~a~~~~~~m 49 (248)
..|+.+.|..++-.|
T Consensus 30 ~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 30 NNNDLDLTIGLLLKE 44 (49)
T ss_dssp TTTCSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhc
Confidence 346666666655554
No 391
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=23.69 E-value=1.6e+02 Score=19.38 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHH-HcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCcCHhhHHH
Q 039342 39 FEEAIKAYVEME-KVRCDP---NERTLEAVLSVYCFAGLVDESKEQFQEIKS-SGILPSVMCYCM 98 (248)
Q Consensus 39 ~~~a~~~~~~m~-~~~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ 98 (248)
++.+.++.+... ..|+.| ++.++.-++....+.|-++.. +.|..|.. ++. .+++|+.
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~~RN~--tvH~Y~e 115 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRDMRNI--TSHTYDQ 115 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHHHHTT--GGGTTSH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHHHhhH--hcccccH
Confidence 344444444432 245543 355677777777777776665 44555543 222 4455554
No 392
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=23.55 E-value=1.9e+02 Score=19.99 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 039342 221 TAISVWLNKMYEMF 234 (248)
Q Consensus 221 ~~~~~~~~~m~~~~ 234 (248)
+.|..+++.+.+.+
T Consensus 127 ~~A~~i~~~~~~~~ 140 (200)
T 1ais_B 127 RRAIEILDEAYKRG 140 (200)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 34444444444443
No 393
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=22.88 E-value=1.4e+02 Score=21.34 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=5.7
Q ss_pred HHHHHhcCCHHHH
Q 039342 30 IEAFRQGGRFEEA 42 (248)
Q Consensus 30 i~~~~~~~~~~~a 42 (248)
+...+..|+.+-+
T Consensus 40 L~~A~~~g~~~~v 52 (261)
T 2xai_A 40 LHEACLGGHLSCV 52 (261)
T ss_dssp HHHHHHHTCHHHH
T ss_pred HHHHHHcCCHHHH
Confidence 3333444554433
No 394
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=22.40 E-value=2.3e+02 Score=20.74 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=15.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHH
Q 039342 21 RNSDSFNAVIEAFRQGGRFEEAIK 44 (248)
Q Consensus 21 ~~~~~y~~li~~~~~~~~~~~a~~ 44 (248)
|....|...+...+..|++..++.
T Consensus 134 pat~aYt~~l~~~a~~g~~~~~la 157 (263)
T 2qcx_A 134 PTAYSFTSHMYRSVLSGNFAEILA 157 (263)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHH
Confidence 445567777777777777655443
No 395
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.34 E-value=1.9e+02 Score=19.72 Aligned_cols=53 Identities=8% Similarity=-0.061 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC
Q 039342 39 FEEAIKAYVEMEKVRCDPNERTLEAVLSVYCFAGLVDESKEQFQEIKSSGILPS 92 (248)
Q Consensus 39 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 92 (248)
.+.+..+++.+.+.|+--|..--...+....+.|.+ ....+-.++.+.|+.++
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~~ 101 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDDN 101 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCHH
Confidence 466788888888899876666666777777766554 34667788889998643
No 396
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=22.23 E-value=1.8e+02 Score=19.31 Aligned_cols=68 Identities=9% Similarity=-0.058 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 55 DPNERTLEAVLSVYCFAGL---VDESKEQFQEIKSSGILPSVMCYCMLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 55 ~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
.|+..+--..-.++.+... ..++..+++++.+.+..-.....--|--++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444444444444444443 3344555555544321112222333444555666666666666655543
No 397
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=22.09 E-value=75 Score=14.92 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=12.2
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 039342 65 LSVYCFAGLVDESKEQFQEIK 85 (248)
Q Consensus 65 l~~~~~~g~~~~a~~~~~~m~ 85 (248)
+.-|.+.|+.++|..+-.+++
T Consensus 9 ~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 9 AEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHH
Confidence 445556666666666655554
No 398
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=22.07 E-value=23 Score=23.82 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCc
Q 039342 38 RFEEAIKAYVEMEKVRCD-PNERTLEAVLSVYC---FAGLVDESKEQFQEIKSSGILP 91 (248)
Q Consensus 38 ~~~~a~~~~~~m~~~~~~-p~~~t~~~ll~~~~---~~g~~~~a~~~~~~m~~~~~~p 91 (248)
.+++|.+.+..|++.-+. -.+..||..|..+- ..++. .++|..+++.++.|
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~lgL 127 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGITL 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTCSS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCccc
Confidence 578888888888765432 24567888877664 34444 55666677665543
No 399
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=22.06 E-value=1.2e+02 Score=19.64 Aligned_cols=19 Identities=5% Similarity=0.058 Sum_probs=10.0
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 039342 30 IEAFRQGGRFEEAIKAYVE 48 (248)
Q Consensus 30 i~~~~~~~~~~~a~~~~~~ 48 (248)
+...+..|+.+.+..+++.
T Consensus 7 L~~A~~~g~~~~v~~ll~~ 25 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQ 25 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHc
Confidence 3444566666555555443
No 400
>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3
Probab=22.00 E-value=2.1e+02 Score=20.13 Aligned_cols=74 Identities=8% Similarity=0.017 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCC------CCHHHHHHHHHHHHhcCChhHHH-----------HHHHHHHHCCCCcCHhhHHHHHHHHHhc
Q 039342 44 KAYVEMEKVRCD------PNERTLEAVLSVYCFAGLVDESK-----------EQFQEIKSSGILPSVMCYCMLLAVYAKS 106 (248)
Q Consensus 44 ~~~~~m~~~~~~------p~~~t~~~ll~~~~~~g~~~~a~-----------~~~~~m~~~~~~p~~~~~~~li~~~~~~ 106 (248)
.+++ +.+.|+. |....|...+...+..|++..+. ++.+.+.+.. .|+ ..|..-|..|+..
T Consensus 83 ~lh~-~~~~Gi~~~~~~~p~t~aY~~~l~~~a~~~~~~~~laAl~pc~~~Y~~i~~~l~~~~-~~~-~~y~~Wi~~y~~~ 159 (220)
T 1rtw_A 83 FEKK-AQELGISLNGEIDWRAKSYVNYLLSVASLGSFLEGFTALYCEEKAYYEAWKWVRENL-KER-SPYQEFINHWSSQ 159 (220)
T ss_dssp HHHH-HHHTTCCSSSCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHC-SSC-CTTHHHHHHHHSH
T ss_pred HHHH-HHHCCCCCCCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhcc-CCC-chHHHHHHHhCCH
Confidence 3444 5555553 33455666666666666655543 2233443332 244 5678888888765
Q ss_pred C---CHHHHHHHHHHHH
Q 039342 107 N---RWDDAYGLLDEMH 120 (248)
Q Consensus 107 ~---~~~~a~~~~~~m~ 120 (248)
. -.+...++++++.
T Consensus 160 ~f~~~v~~~~~~ld~~~ 176 (220)
T 1rtw_A 160 EFGEYVKRIEKILNSLA 176 (220)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3 2444555555553
No 401
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=21.68 E-value=92 Score=18.20 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=22.9
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 039342 18 GVARNSDSFNAVIEAFRQGGRFEEAIKAYVEM 49 (248)
Q Consensus 18 g~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m 49 (248)
+++|++.||+-+...+-+..-..+++.+.+++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46788899998887777666666666666554
No 402
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.34 E-value=3.5e+02 Score=22.42 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCH--hhHH-HHHHHHHhcCCHHHHHHHHHHHHHC
Q 039342 58 ERTLEAVLSVYCFAGLVDESKEQFQEIKSS-GILPSV--MCYC-MLLAVYAKSNRWDDAYGLLDEMHTN 122 (248)
Q Consensus 58 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~~--~~~~-~li~~~~~~~~~~~a~~~~~~m~~~ 122 (248)
...+|.+++.|...+.++.|..+.+...-- .-.++. ..|. -+-..+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 466788999999999999999999887411 001111 1222 1223445677888898888876543
No 403
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=20.31 E-value=2.8e+02 Score=20.79 Aligned_cols=119 Identities=18% Similarity=0.095 Sum_probs=58.6
Q ss_pred HHHHHHCCCCchHHhHHHHhcccccccchHHHHHHHHHHHHhcCCCCCHHHHHHHHHH----HHhcCchHHHHHHHH-HH
Q 039342 116 LDEMHTNRISNIHQVTGQMIKGEFDDESNWQMVEYVFDKLNCEGYGLGMRFYNALLEA----LWCLGLRERAARVLD-EA 190 (248)
Q Consensus 116 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~----~~~~g~~~~a~~~~~-~m 190 (248)
++.+.+.|+.|....+..++.- +...=.++.+.++++.+...|...-..+.-+++.. .. ..+.+...+.+. .+
T Consensus 177 ~~hL~~~~i~~~~~~~~W~ltl-F~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll-~~d~~~~l~~l~~~l 254 (310)
T 3hzj_A 177 HSHFSDLNLEAHMYASQWFLTL-FTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLL-QADFEGALKFFRVQL 254 (310)
T ss_dssp HHHHHHHTCCGGGTSHHHHHHT-TTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHH-TCCHHHHHHHHHTHH
T ss_pred HHHHHHcCCChHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHhC
Confidence 3445566777777666666655 44444578889999988888754211111222221 22 236777777775 33
Q ss_pred HHCCCCCCcchhhhHHhhhhhhccccchHHHHHHHHHHHHHHHHHcCCC
Q 039342 191 TKRGLFPELFRHNKLVWSVDVHRMWEGGAYTAISVWLNKMYEMFMMGED 239 (248)
Q Consensus 191 ~~~g~~p~~~t~~~li~~~~~~~~~~~g~~~~~~~~~~~m~~~~~~~~~ 239 (248)
.+. .. +......++.... .-........+.++-+..+++...++..
T Consensus 255 p~~-~~-~~~d~~~ll~~A~-~l~~~~~~l~~~~~ey~~~~~~~~~~~~ 300 (310)
T 3hzj_A 255 PKR-YR-AEENARRLMEQAC-NIKVPTKKLKKYEKEYQTMRESQLQQED 300 (310)
T ss_dssp HHT-TC-SHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHC--------
T ss_pred ccc-cc-ccccHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHcccC
Confidence 332 11 1111233333221 1124446666666667767666554433
No 404
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=20.20 E-value=95 Score=23.18 Aligned_cols=81 Identities=16% Similarity=0.069 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHh---hHHHHHHH
Q 039342 28 AVIEAFRQGGRFEEAIKAYVEMEKVRCDPNERTL--EAVLSVYCFAGLVDESKEQFQEIKSSGILPSVM---CYCMLLAV 102 (248)
Q Consensus 28 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~ 102 (248)
+.+...+..|+.+-+. .+.+.|..++.... .+.+...+..|+.+ +++.+.+.|..++.. -++. +..
T Consensus 60 t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~-L~~ 130 (351)
T 3utm_A 60 TPLHLAAGYNRVRIVQ----LLLQHGADVHAKDKGGLVPLHNACSYGHYE----VTELLLKHGACVNAMDLWQFTP-LHE 130 (351)
T ss_dssp CHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCH-HHH
T ss_pred CHHHHHHHcCCHHHHH----HHHHcCCCCCccCCCCCcHHHHHHHCCCHH----HHHHHHHCCCCCCCCCCCCCCH-HHH
Confidence 3455556667765444 44445655433211 12344445566655 444445555554432 2233 333
Q ss_pred HHhcCCHHHHHHHHH
Q 039342 103 YAKSNRWDDAYGLLD 117 (248)
Q Consensus 103 ~~~~~~~~~a~~~~~ 117 (248)
.+..|+.+-+..+++
T Consensus 131 A~~~~~~~~v~~Ll~ 145 (351)
T 3utm_A 131 AASKNRVEVCSLLLS 145 (351)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 455666654444443
No 405
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=20.18 E-value=41 Score=18.26 Aligned_cols=12 Identities=8% Similarity=-0.042 Sum_probs=7.6
Q ss_pred chHHHHHHHHHH
Q 039342 3 LYKECQAILSRM 14 (248)
Q Consensus 3 ~~~~a~~~~~~m 14 (248)
|++.|...|.+.
T Consensus 34 d~~~A~~~F~~~ 45 (57)
T 2jp7_A 34 NYEVAIKGFQSS 45 (57)
T ss_dssp CSHHHHHHHHHS
T ss_pred CHHHHHHHHHHH
Confidence 456666666665
No 406
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=20.18 E-value=1.7e+02 Score=18.36 Aligned_cols=15 Identities=0% Similarity=-0.008 Sum_probs=6.6
Q ss_pred hcCCHHHHHHHHHHH
Q 039342 35 QGGRFEEAIKAYVEM 49 (248)
Q Consensus 35 ~~~~~~~a~~~~~~m 49 (248)
..++++...++..++
T Consensus 45 ~~~d~~~l~~~aHkL 59 (119)
T 3myf_A 45 GQNDQATMLSTIHKL 59 (119)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 334444444444444
No 407
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=20.15 E-value=1.1e+02 Score=16.08 Aligned_cols=19 Identities=5% Similarity=0.018 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHHHcCCCC
Q 039342 38 RFEEAIKAYVEMEKVRCDP 56 (248)
Q Consensus 38 ~~~~a~~~~~~m~~~~~~p 56 (248)
|+..|.++++.++++|--|
T Consensus 8 Dv~RaiELle~lq~sgevp 26 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVN 26 (53)
T ss_dssp HHHHHHHHHHHHGGGSSST
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 3444455555554444333
Done!