BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039343
         (277 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FI5|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hantaan
           Virus Strain 76- 118 Nucleoprotein
          Length = 113

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 209 LTTVQSVSVGAGVIPVVEDGRKVGASEGELLYMRARFERVVGSRDSEAFYMLNPD 263
           + T+++ + G G + + E  R++ A EG+L+  R +       RD+E  Y  +PD
Sbjct: 9   MGTLEAQTQGPGSMTMEELQREINAHEGQLVIARQKV------RDAEKQYEKDPD 57


>pdb|4AXO|A Chain A, Structure Of The Clostridium Difficile Eutq Protein
 pdb|4AXO|B Chain B, Structure Of The Clostridium Difficile Eutq Protein
          Length = 151

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 204 LDWHVLTTVQSVSVGAGVIPVVEDGRKVGASEGELLYM 241
            DW  L   +   V  G + ++ DGRKV AS GEL+++
Sbjct: 78  FDW-TLNYDEIDYVIDGTLDIIIDGRKVSASSGELIFI 114


>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
          Length = 766

 Score = 27.7 bits (60), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 187 YCNGRKCGYATSRA------CGGLDWHVLTTVQSVSVGAGVIPVVEDGRKVGASEGELLY 240
           YC+  K   +++R       C G +   L T  S++VGA V  V E+G  +     ++ Y
Sbjct: 547 YCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAVGAQVSYVPEEGISLEQLSEDIEY 606

Query: 241 MRARFERVVG 250
           +   FE+  G
Sbjct: 607 LAQSFEKAEG 616


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,184,772
Number of Sequences: 62578
Number of extensions: 269925
Number of successful extensions: 519
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 5
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)