BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039343
         (277 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q92BC0|ARGD_LISIN Acetylornithine aminotransferase OS=Listeria innocua serovar 6a
           (strain CLIP 11262) GN=argD PE=3 SV=1
          Length = 384

 Score = 34.7 bits (78), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 94  LSMPTQLSVTPSLGRKVTGTLFGNRRGHVSFAVQDDPRSEPVLLLELAMSTATLVKEMAS 153
           +S   Q  +    GR V G  +       SF  + D  +  V+L E+      ++   A+
Sbjct: 129 MSATGQAKIHQGFGRLVPGFTYVPYNDIESFKTELDENTAAVML-EVIQGEGGVIPGNAA 187

Query: 154 GLVRIALECEKAGP------VQTGKGRAGRLF 179
            L+ + + C+KAG       VQTG GR G LF
Sbjct: 188 WLMEVQMLCKKAGALLIIDEVQTGLGRTGTLF 219


>sp|Q59928|ARGD_STRMU Acetylornithine aminotransferase OS=Streptococcus mutans serotype c
           (strain ATCC 700610 / UA159) GN=argD PE=3 SV=2
          Length = 379

 Score = 32.3 bits (72), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 20/82 (24%)

Query: 115 FGNRRGHVSFAVQDDPRSEPVLLLELAMSTATLVKEMASG-----------LVRIALECE 163
           FG+   H  +AV +D  S   L+ E   +TA ++ E+  G           +  +A  C+
Sbjct: 140 FGDAVPHFHYAVFNDLNSVKALVTE---NTAAVMLELVQGESGVLPAEQDFVTALADYCQ 196

Query: 164 KAG------PVQTGKGRAGRLF 179
           K G       VQTG GR G+L+
Sbjct: 197 KNGLLLIIDEVQTGMGRTGKLY 218


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,651,766
Number of Sequences: 539616
Number of extensions: 3841843
Number of successful extensions: 8553
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8551
Number of HSP's gapped (non-prelim): 4
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)