Query 039343
Match_columns 277
No_of_seqs 93 out of 104
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 08:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04759 DUF617: Protein of un 100.0 7.9E-96 2E-100 629.3 17.9 166 109-277 1-166 (166)
2 TIGR01570 A_thal_3588 uncharac 100.0 2.4E-94 5.3E-99 617.4 16.6 160 110-277 1-161 (161)
3 COG2514 Predicted ring-cleavag 62.3 3.5 7.6E-05 39.2 0.9 13 254-266 108-120 (265)
4 PF12851 Tet_JBP: Oxygenase do 35.1 23 0.00049 30.8 1.6 32 183-214 1-36 (171)
5 PF02955 GSH-S_ATP: Prokaryoti 33.0 25 0.00054 30.9 1.5 23 185-208 88-110 (173)
6 COG1886 FliN Flagellar motor s 27.8 52 0.0011 27.8 2.5 19 177-196 102-120 (136)
7 PF12681 Glyoxalase_2: Glyoxal 23.1 43 0.00094 24.2 1.0 11 255-265 93-103 (108)
8 TIGR01380 glut_syn glutathione 22.1 65 0.0014 29.9 2.2 34 186-224 211-244 (312)
9 PF08150 FerB: FerB (NUC096) d 21.0 65 0.0014 25.6 1.7 18 178-196 5-22 (76)
10 PF15566 Imm18: Immunity prote 19.1 17 0.00037 27.1 -1.8 34 237-271 3-36 (52)
No 1
>PF04759 DUF617: Protein of unknown function, DUF617; InterPro: IPR006460 This family of hypothetical plant proteins are defined by a region of about 170 amino acids found at the C terminus. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. At least 12 distinct members are found in Arabidopsis thaliana (Mouse-ear cress).
Probab=100.00 E-value=7.9e-96 Score=629.35 Aligned_cols=166 Identities=67% Similarity=1.094 Sum_probs=153.2
Q ss_pred eeEEEEeccCCCceeeeeecCCCCCCeeeeeeccchHHHHHHhhcCceeEEeeeccCCCCCCCCCCCCcccccceEEEEe
Q 039343 109 KVTGTLFGNRRGHVSFAVQDDPRSEPVLLLELAMSTATLVKEMASGLVRIALECEKAGPVQTGKGRAGRLFHEPMWTMYC 188 (277)
Q Consensus 109 ~vTGTlFG~RrGrV~faiQedp~~~P~lLLELa~pT~~L~rEM~sGlvRIALEcek~~~~~~~~~~~~~Ll~epvWtmyC 188 (277)
||||||||||||||+||||+||++.|+||||||+||++|+|||++|+|||||||||++... +.....+||+||+|+|||
T Consensus 1 rvtGTlFG~RrGrV~~aiQ~d~~s~P~lllELa~pT~~L~~EM~~GlvRIaLEc~k~~~~~-~~~~~~~Ll~ep~W~myC 79 (166)
T PF04759_consen 1 RVTGTLFGHRRGRVSFAIQEDPRSPPILLLELAMPTSALVREMASGLVRIALECEKRKGKS-KGAASGSLLEEPVWTMYC 79 (166)
T ss_pred CcEEEEEecccceEEEEEecCCCCCCeEEEEecCcHHHHHHHhhcCeEEEEEEecCCCCCC-CcccccccccceeEEEEE
Confidence 6999999999999999999999999999999999999999999999999999999986321 112245699999999999
Q ss_pred cCceeeeeeeecCCcccHHHHHhhceeeeccccccCcCCCCCCCCCCCceeeeeeecceeeccCCcceeeeecCCCCCCC
Q 039343 189 NGRKCGYATSRACGGLDWHVLTTVQSVSVGAGVIPVVEDGRKVGASEGELLYMRARFERVVGSRDSEAFYMLNPDNNGGP 268 (277)
Q Consensus 189 NGRK~GYAvRRe~t~~D~~VL~~l~~VSmGAGVLP~~~~~~~~~~~dGElmYMRA~FERVVGSkDSEsfyMinPdg~~Gp 268 (277)
|||||||||||+|||+||+||++|++|||||||||+.. .+.++.|||||||||+|||||||+|||||||||||||+||
T Consensus 80 NGrK~GyAvRRe~t~~d~~vL~~l~~VS~GAGVlP~~~--~~~~~~~gel~YMRA~FERVVGS~DSEsfyminPdg~~Gp 157 (166)
T PF04759_consen 80 NGRKVGYAVRREPTDDDLHVLELLRSVSMGAGVLPGGG--GGSGGGDGELMYMRARFERVVGSRDSESFYMINPDGNGGP 157 (166)
T ss_pred CCceeeeeEEcCCCHHHHHHHHhhheeeecceeccCcc--ccCCCCCceEeeeeeeeeeeeccCCcceeEEECCCCCCCc
Confidence 99999999999999999999999999999999999832 2345679999999999999999999999999999999999
Q ss_pred ceEEEEEeC
Q 039343 269 ELSIFLLRI 277 (277)
Q Consensus 269 ELSIFflRi 277 (277)
||||||+||
T Consensus 158 ELSIFf~Rv 166 (166)
T PF04759_consen 158 ELSIFFLRV 166 (166)
T ss_pred eEEEEEEeC
Confidence 999999997
No 2
>TIGR01570 A_thal_3588 uncharacterized plant-specific domain TIGR01570. This model represents a region of about 170 amino acids found at the C-terminus of a family of plant proteins. These proteins typically have additional highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterized protein. At least 12 distinct members are found in Arabidopsis thaliana.
Probab=100.00 E-value=2.4e-94 Score=617.37 Aligned_cols=160 Identities=61% Similarity=1.023 Sum_probs=150.1
Q ss_pred eEEEEeccCCCceeeeeecCCCCCCeeeeeeccchHHHHHHhhcCceeEEeeeccCCCCCCCCCCCCcccccceEEEEec
Q 039343 110 VTGTLFGNRRGHVSFAVQDDPRSEPVLLLELAMSTATLVKEMASGLVRIALECEKAGPVQTGKGRAGRLFHEPMWTMYCN 189 (277)
Q Consensus 110 vTGTlFG~RrGrV~faiQedp~~~P~lLLELa~pT~~L~rEM~sGlvRIALEcek~~~~~~~~~~~~~Ll~epvWtmyCN 189 (277)
|||||||||||||+||||+||++.|+||||||+||++|+|||++|+|||||||||++ ..++.+|++||+|+||||
T Consensus 1 vtGTlfG~RrgrV~~~iQ~dp~~~P~lllELa~pt~~L~~Em~~G~vRIaLEc~k~~-----~~~~~~ll~ep~W~myCN 75 (161)
T TIGR01570 1 VTGTIFGYRKGRVNFCIQEDRRSLPILLLELAMPTSVLQKEMSSGLVRIALECETRK-----QDKDSKLLSEPVWTMYCN 75 (161)
T ss_pred CeEEEecCCCCcceeeecCCCCCCCeeeeeecCcHHHHHHHhhcCceeEEeeeeccc-----cCCCccceeeeeEEEEEC
Confidence 799999999999999999999999999999999999999999999999999999985 235678999999999999
Q ss_pred CceeeeeeeecCCcccHHHHHhhceeeeccccccCcCCCCCCCCCC-CceeeeeeecceeeccCCcceeeeecCCCCCCC
Q 039343 190 GRKCGYATSRACGGLDWHVLTTVQSVSVGAGVIPVVEDGRKVGASE-GELLYMRARFERVVGSRDSEAFYMLNPDNNGGP 268 (277)
Q Consensus 190 GRK~GYAvRRe~t~~D~~VL~~l~~VSmGAGVLP~~~~~~~~~~~d-GElmYMRA~FERVVGSkDSEsfyMinPdg~~Gp 268 (277)
||||||||||+|||+||+||++|++|||||||||+..+ .++.| ||||||||+|||||||||||||||||||||+||
T Consensus 76 Grk~GyAvRR~~t~~d~~vL~~l~~VS~GAGVlP~~~~---~~~~~~gel~YMRA~FERVVGS~DSEsfyminPdg~~gp 152 (161)
T TIGR01570 76 GRKVGYAVKRSASEEDMTVLTALSKVSVGAGVLPCGKE---LGGFDEDELMYMRASFERVVGSKDSESFYMINPEGNIGQ 152 (161)
T ss_pred CceeeEeEecCCCHHHHHHHHhhheeeecceeccCCCC---CCCCCCceEEEEeeeeeEeccccCceeEEeECCCCCCCc
Confidence 99999999999999999999999999999999996432 23334 999999999999999999999999999999999
Q ss_pred ceEEEEEeC
Q 039343 269 ELSIFLLRI 277 (277)
Q Consensus 269 ELSIFflRi 277 (277)
||||||+|+
T Consensus 153 ELSIF~lR~ 161 (161)
T TIGR01570 153 ELSIFFLRS 161 (161)
T ss_pred eEEEEEEeC
Confidence 999999996
No 3
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=62.30 E-value=3.5 Score=39.21 Aligned_cols=13 Identities=54% Similarity=1.058 Sum_probs=12.3
Q ss_pred cceeeeecCCCCC
Q 039343 254 SEAFYMLNPDNNG 266 (277)
Q Consensus 254 SEsfyMinPdg~~ 266 (277)
|||+|+-||+|||
T Consensus 108 SEAlYl~DPEGNG 120 (265)
T COG2514 108 SEALYLEDPEGNG 120 (265)
T ss_pred heeeeecCCCCCe
Confidence 9999999999985
No 4
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=35.08 E-value=23 Score=30.80 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=21.0
Q ss_pred eEEEEecCceeee---eeee-cCCcccHHHHHhhce
Q 039343 183 MWTMYCNGRKCGY---ATSR-ACGGLDWHVLTTVQS 214 (277)
Q Consensus 183 vWtmyCNGRK~GY---AvRR-e~t~~D~~VL~~l~~ 214 (277)
-|.||-||+|.+= +.|+ +.+.++..+.+.|+.
T Consensus 1 ~~~~y~~~~~~~r~~~~~rk~~~~~~~~~~~~~l~~ 36 (171)
T PF12851_consen 1 SWSMYFNGCKFPRGSKKPRKFRLTPENPKLEENLQE 36 (171)
T ss_pred CeeEEeCCCCccccccccceeecccccccHHHHHHH
Confidence 3999999998775 4444 556666555555443
No 5
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=33.04 E-value=25 Score=30.90 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=15.2
Q ss_pred EEEecCceeeeeeeecCCcccHHH
Q 039343 185 TMYCNGRKCGYATSRACGGLDWHV 208 (277)
Q Consensus 185 tmyCNGRK~GYAvRRe~t~~D~~V 208 (277)
-+++||+=+| |++|.|.+.|+++
T Consensus 88 ii~~nG~~~~-av~R~P~~gd~R~ 110 (173)
T PF02955_consen 88 IILFNGEPSH-AVRRIPAKGDFRS 110 (173)
T ss_dssp EEEETTEE-S-EEEEE--SS-S--
T ss_pred EEEECCEEhH-HeecCCCCCCcee
Confidence 4689999999 9999999999875
No 6
>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.82 E-value=52 Score=27.80 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.1
Q ss_pred cccccceEEEEecCceeeee
Q 039343 177 RLFHEPMWTMYCNGRKCGYA 196 (277)
Q Consensus 177 ~Ll~epvWtmyCNGRK~GYA 196 (277)
++..+|+|- ++|||++||+
T Consensus 102 ~~~~~~VdI-~vNg~~Ig~G 120 (136)
T COG1886 102 KLAGEPVDI-LVNGRLIGRG 120 (136)
T ss_pred CcCCCceEE-EECCEEEEEE
Confidence 577889986 5999999996
No 7
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=23.09 E-value=43 Score=24.19 Aligned_cols=11 Identities=45% Similarity=1.192 Sum_probs=7.7
Q ss_pred ceeeeecCCCC
Q 039343 255 EAFYMLNPDNN 265 (277)
Q Consensus 255 EsfyMinPdg~ 265 (277)
-.||++||||+
T Consensus 93 ~~~~~~DPdG~ 103 (108)
T PF12681_consen 93 RSFYFIDPDGN 103 (108)
T ss_dssp EEEEEE-TTS-
T ss_pred EEEEEECCCCC
Confidence 47899999986
No 8
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=22.08 E-value=65 Score=29.91 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=24.0
Q ss_pred EEecCceeeeeeeecCCcccHHHHHhhceeeeccccccC
Q 039343 186 MYCNGRKCGYATSRACGGLDWHVLTTVQSVSVGAGVIPV 224 (277)
Q Consensus 186 myCNGRK~GYAvRRe~t~~D~~VL~~l~~VSmGAGVLP~ 224 (277)
+.-||+-+|||++|.+.+.||.. -++.|+-+-|.
T Consensus 211 ~vv~g~vv~~ai~R~~~~gd~r~-----N~~~Gg~~~~~ 244 (312)
T TIGR01380 211 LLIDGEPIGAAVARIPAGGEFRG-----NLAVGGRGEAT 244 (312)
T ss_pred EEECCeEEEEEEEecCCCCCccc-----cccCCceeecc
Confidence 45688889999999988877765 33455444443
No 9
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=21.02 E-value=65 Score=25.60 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=14.8
Q ss_pred ccccceEEEEecCceeeee
Q 039343 178 LFHEPMWTMYCNGRKCGYA 196 (277)
Q Consensus 178 Ll~epvWtmyCNGRK~GYA 196 (277)
|=|.-+| |.||+|++.||
T Consensus 5 iPDV~IW-Ml~g~kRvAYa 22 (76)
T PF08150_consen 5 IPDVFIW-MLSGNKRVAYA 22 (76)
T ss_pred CCcEEEE-EEeCCeEEEEE
Confidence 4456678 78999999999
No 10
>PF15566 Imm18: Immunity protein 18
Probab=19.09 E-value=17 Score=27.15 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=27.1
Q ss_pred ceeeeeeecceeeccCCcceeeeecCCCCCCCceE
Q 039343 237 ELLYMRARFERVVGSRDSEAFYMLNPDNNGGPELS 271 (277)
Q Consensus 237 ElmYMRA~FERVVGSkDSEsfyMinPdg~~GpELS 271 (277)
+|.|+...-++..++.+.+-=|+|.|+= +|-|||
T Consensus 3 gL~~L~~~l~~L~~~~~~~H~Hlmtp~W-gG~ELs 36 (52)
T PF15566_consen 3 GLELLQDQLENLQEKEPFDHEHLMTPDW-GGEELS 36 (52)
T ss_pred hHHHHHHHHHHHHhccCCCCceeccccc-cccccc
Confidence 4778888888888888888889999974 466665
Done!