Query 039343
Match_columns 277
No_of_seqs 93 out of 104
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 14:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kd2_A FAS apoptotic inhibitor 26.4 35 0.0012 27.0 2.3 10 185-194 34-43 (94)
2 4gym_A Glyoxalase/bleomycin re 17.3 48 0.0016 24.5 1.3 10 256-265 117-126 (149)
3 3rri_A Glyoxalase/bleomycin re 13.2 73 0.0025 22.7 1.3 10 256-265 112-121 (135)
4 2l6o_A Uncharacterized protein 12.6 88 0.003 25.2 1.8 28 217-244 1-31 (114)
5 3sk2_A EHPR; antibiotic resist 12.3 80 0.0027 22.7 1.3 11 255-265 114-124 (132)
6 3jyb_A Sensor protein; beta ba 11.3 1.8E+02 0.0062 22.3 3.2 30 114-144 41-70 (145)
7 3ey7_A Biphenyl-2,3-DIOL 1,2-d 11.2 92 0.0031 21.7 1.3 11 255-265 113-123 (133)
8 1xqa_A Glyoxalase/bleomycin re 10.9 70 0.0024 22.0 0.6 12 254-265 96-107 (113)
9 2p25_A Glyoxalase family prote 10.8 98 0.0033 21.2 1.3 11 255-265 110-120 (126)
10 2it9_A Hypothetical protein; s 10.7 60 0.0021 26.9 0.2 28 155-199 63-90 (127)
No 1
>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} PDB: 2kw1_A
Probab=26.44 E-value=35 Score=26.98 Aligned_cols=10 Identities=40% Similarity=1.019 Sum_probs=7.5
Q ss_pred EEEecCceee
Q 039343 185 TMYCNGRKCG 194 (277)
Q Consensus 185 tmyCNGRK~G 194 (277)
.+||||+|+=
T Consensus 34 dVwvNG~~ie 43 (94)
T 2kd2_A 34 DVWCNGQKME 43 (94)
T ss_dssp EEEESSSBCC
T ss_pred EEEECCEEeE
Confidence 4679999863
No 2
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=17.28 E-value=48 Score=24.49 Aligned_cols=10 Identities=10% Similarity=0.046 Sum_probs=8.8
Q ss_pred eeeeecCCCC
Q 039343 256 AFYMLNPDNN 265 (277)
Q Consensus 256 sfyMinPdg~ 265 (277)
++|.-|||||
T Consensus 117 ~~~f~DPDGn 126 (149)
T 4gym_A 117 GRSFHDLDGH 126 (149)
T ss_dssp EEEEECTTCC
T ss_pred EEEEEcCCCC
Confidence 5799999997
No 3
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=13.19 E-value=73 Score=22.73 Aligned_cols=10 Identities=40% Similarity=1.205 Sum_probs=9.0
Q ss_pred eeeeecCCCC
Q 039343 256 AFYMLNPDNN 265 (277)
Q Consensus 256 sfyMinPdg~ 265 (277)
+||+.|||||
T Consensus 112 ~~~~~DPdGn 121 (135)
T 3rri_A 112 TFFLIDPSNN 121 (135)
T ss_dssp EEEEECTTCC
T ss_pred EEEEECCCCC
Confidence 7899999987
No 4
>2l6o_A Uncharacterized protein YP_926445.1; structural genomics, PSI-biology, protein structure initiati center for structural genomics, JCSG; NMR {Shewanella amazonensis}
Probab=12.62 E-value=88 Score=25.23 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=17.3
Q ss_pred eccccccCcCCCCCC---CCCCCceeeeeee
Q 039343 217 VGAGVIPVVEDGRKV---GASEGELLYMRAR 244 (277)
Q Consensus 217 mGAGVLP~~~~~~~~---~~~dGElmYMRA~ 244 (277)
||||-.|...-.=++ -.+|+||+|+.-.
T Consensus 1 ~~~~~~~~~mi~WPailkl~gddELiYL~s~ 31 (114)
T 2l6o_A 1 MGAGQTPHPQLIWPALLKQQGCNELLPLRTN 31 (114)
T ss_dssp CCSSSCSCSSCCSSEEECCSSCCCCEEESSH
T ss_pred CCCCcccCcCccCCEEEecCCCceeEeecCH
Confidence 799988865310000 1247899999754
No 5
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Probab=12.26 E-value=80 Score=22.74 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=9.2
Q ss_pred ceeeeecCCCC
Q 039343 255 EAFYMLNPDNN 265 (277)
Q Consensus 255 EsfyMinPdg~ 265 (277)
..||+.|||||
T Consensus 114 ~~~~~~DPdGn 124 (132)
T 3sk2_A 114 RTFLISDPDGH 124 (132)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 45899999987
No 6
>3jyb_A Sensor protein; beta barrel, carbohydrate binding domain, signaling kinase, component system, RETS, kinase, phosphoprotein, transferase; 2.04A {Pseudomonas aeruginosa}
Probab=11.25 E-value=1.8e+02 Score=22.34 Aligned_cols=30 Identities=17% Similarity=0.029 Sum_probs=21.7
Q ss_pred EeccCCCceeeeeecCCCCCCeeeeeeccch
Q 039343 114 LFGNRRGHVSFAVQDDPRSEPVLLLELAMST 144 (277)
Q Consensus 114 lFG~RrGrV~faiQedp~~~P~lLLELa~pT 144 (277)
=||+.++-+||.++-. ...-..+||+..|.
T Consensus 41 n~G~t~~~~Wlr~~l~-~~~~~~~L~i~~p~ 70 (145)
T 3jyb_A 41 IFPASPQAVWLQVQLP-AQKVPSWLWIFAPR 70 (145)
T ss_dssp EECSCSCEEEEEEEEC-CCSSCEEEEEECTT
T ss_pred ccCCCCCCEEEEEEEc-CCCcceEEEECCCC
Confidence 3799999999998866 33345677777653
No 7
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=11.24 E-value=92 Score=21.68 Aligned_cols=11 Identities=45% Similarity=1.026 Sum_probs=9.3
Q ss_pred ceeeeecCCCC
Q 039343 255 EAFYMLNPDNN 265 (277)
Q Consensus 255 EsfyMinPdg~ 265 (277)
..||+.|||||
T Consensus 113 ~~~~~~DPdG~ 123 (133)
T 3ey7_A 113 TSFYFRDPDGN 123 (133)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 46899999986
No 8
>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural GEN midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2
Probab=10.93 E-value=70 Score=22.05 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=9.6
Q ss_pred cceeeeecCCCC
Q 039343 254 SEAFYMLNPDNN 265 (277)
Q Consensus 254 SEsfyMinPdg~ 265 (277)
...+|+.|||||
T Consensus 96 ~~~~~~~DPdG~ 107 (113)
T 1xqa_A 96 AYTFYVEAPGGF 107 (113)
T ss_dssp CEEEEEEETTTE
T ss_pred cEEEEEECCCCc
Confidence 357899999986
No 9
>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}
Probab=10.83 E-value=98 Score=21.23 Aligned_cols=11 Identities=18% Similarity=0.573 Sum_probs=8.8
Q ss_pred ceeeeecCCCC
Q 039343 255 EAFYMLNPDNN 265 (277)
Q Consensus 255 EsfyMinPdg~ 265 (277)
-.+|+.||||+
T Consensus 110 ~~~~~~DPdG~ 120 (126)
T 2p25_A 110 KMTFFFDPDGL 120 (126)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 35788999986
No 10
>2it9_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; HET: MSE PGE; 1.80A {Prochlorococcus marinus} SCOP: d.18.1.3
Probab=10.71 E-value=60 Score=26.92 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=22.5
Q ss_pred ceeEEeeeccCCCCCCCCCCCCcccccceEEEEecCceeeeeeee
Q 039343 155 LVRIALECEKAGPVQTGKGRAGRLFHEPMWTMYCNGRKCGYATSR 199 (277)
Q Consensus 155 lvRIALEcek~~~~~~~~~~~~~Ll~epvWtmyCNGRK~GYAvRR 199 (277)
==+|+||-|+. .|-|-|+|.+-.|..|=
T Consensus 63 EE~I~lE~E~~-----------------~~W~eleG~~~~~sLr~ 90 (127)
T 2it9_A 63 DEDITLELERR-----------------PWLAILNGDQYGWNLRL 90 (127)
T ss_dssp TCEEEEEEEET-----------------TEEEEEEEETTEEEEEE
T ss_pred hhheeeeecCc-----------------cEEEEeecccCeeEEEE
Confidence 34888887775 37788999999999875
Done!