Query 039343
Match_columns 277
No_of_seqs 93 out of 104
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 14:45:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039343.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039343hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jifa_ d.32.1.2 (A:) Bleomyci 39.7 5.1 0.00037 27.0 1.3 11 255-265 104-114 (122)
2 d1xrka_ d.32.1.2 (A:) Bleomyci 34.1 7.1 0.00052 25.9 1.3 11 255-265 103-113 (120)
3 d1pj5a1 b.44.2.1 (A:743-830) N 32.1 19 0.0014 24.8 3.5 37 178-225 17-53 (88)
4 d1ecsa_ d.32.1.2 (A:) Bleomyci 30.0 8.9 0.00065 26.0 1.3 10 256-265 102-111 (120)
5 d1yq2a3 b.18.1.5 (A:4-219) bet 22.5 17 0.0012 28.6 1.8 12 185-196 148-159 (216)
6 d1jz8a3 b.18.1.5 (A:13-219) be 21.5 18 0.0013 28.0 1.8 12 185-196 139-150 (207)
7 d1tg7a2 b.18.1.27 (A:667-848) 19.3 24 0.0017 27.5 2.1 14 183-196 91-104 (182)
8 d1jata_ d.20.1.1 (A:) Ubiquiti 19.3 75 0.0055 23.5 5.0 61 67-140 5-73 (152)
9 d1npba_ d.32.1.2 (A:) Fosfomyc 16.9 27 0.002 24.0 1.7 11 255-265 100-110 (140)
10 d2pjsa1 d.32.1.2 (A:3-113) Unc 16.8 24 0.0017 22.8 1.3 11 255-265 96-106 (111)
No 1
>d1jifa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptomyces verticillus [TaxId: 29309]}
Probab=39.69 E-value=5.1 Score=27.02 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=9.9
Q ss_pred ceeeeecCCCC
Q 039343 255 EAFYMLNPDNN 265 (277)
Q Consensus 255 EsfyMinPdg~ 265 (277)
.+||+.|||||
T Consensus 104 ~~~~~~DPdGn 114 (122)
T d1jifa_ 104 REFAVRDPAGN 114 (122)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 48999999997
No 2
>d1xrka_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptoalloteichus hindustanus [TaxId: 2017]}
Probab=34.14 E-value=7.1 Score=25.88 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=9.6
Q ss_pred ceeeeecCCCC
Q 039343 255 EAFYMLNPDNN 265 (277)
Q Consensus 255 EsfyMinPdg~ 265 (277)
-+||+.|||||
T Consensus 103 ~~~~~~DPdGn 113 (120)
T d1xrka_ 103 REFALRDPAGN 113 (120)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 46899999997
No 3
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}
Probab=32.13 E-value=19 Score=24.82 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=22.8
Q ss_pred ccccceEEEEecCceeeeeeeecCCcccHHHHHhhceeeeccccccCc
Q 039343 178 LFHEPMWTMYCNGRKCGYATSRACGGLDWHVLTTVQSVSVGAGVIPVV 225 (277)
Q Consensus 178 Ll~epvWtmyCNGRK~GYAvRRe~t~~D~~VL~~l~~VSmGAGVLP~~ 225 (277)
.-.||+| .||++|||-..=.-+.. -.-++|-|.||..
T Consensus 17 ~g~epI~---~~g~~VG~vTS~~~Sp~--------l~k~Iala~v~~~ 53 (88)
T d1pj5a1 17 LGKEPVF---YKEQAVGYVTSAAYGYT--------VAKPIAYSYLPGT 53 (88)
T ss_dssp CSCCEEE---ETTEEEEECCSEEEETT--------TTEEEEEEEEETT
T ss_pred CCCCeEE---ECCEEEEEEECCeECch--------hccceEEEEEecC
Confidence 3457776 79999999765432221 0135666788754
No 4
>d1ecsa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Klebsiella pneumoniae [TaxId: 573]}
Probab=29.98 E-value=8.9 Score=26.02 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=9.0
Q ss_pred eeeeecCCCC
Q 039343 256 AFYMLNPDNN 265 (277)
Q Consensus 256 sfyMinPdg~ 265 (277)
.||+.|||||
T Consensus 102 ~~~~~DPDGn 111 (120)
T d1ecsa_ 102 MAALVDPDGT 111 (120)
T ss_dssp EEEEECTTSC
T ss_pred EEEEECCCCC
Confidence 4899999997
No 5
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]}
Probab=22.51 E-value=17 Score=28.59 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=10.5
Q ss_pred EEEecCceeeee
Q 039343 185 TMYCNGRKCGYA 196 (277)
Q Consensus 185 tmyCNGRK~GYA 196 (277)
.+||||+++|+.
T Consensus 148 ~V~vNG~~vG~~ 159 (216)
T d1yq2a3 148 KVWVNGQEIGVG 159 (216)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCEEEeEE
Confidence 689999999974
No 6
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]}
Probab=21.52 E-value=18 Score=28.05 Aligned_cols=12 Identities=50% Similarity=1.237 Sum_probs=10.4
Q ss_pred EEEecCceeeee
Q 039343 185 TMYCNGRKCGYA 196 (277)
Q Consensus 185 tmyCNGRK~GYA 196 (277)
++|+||+.+|+.
T Consensus 139 ~V~vNG~~vG~~ 150 (207)
T d1jz8a3 139 HLWCNGRWVGYG 150 (207)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCEEEEEe
Confidence 589999999974
No 7
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]}
Probab=19.29 E-value=24 Score=27.46 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=12.0
Q ss_pred eEEEEecCceeeee
Q 039343 183 MWTMYCNGRKCGYA 196 (277)
Q Consensus 183 vWtmyCNGRK~GYA 196 (277)
...+|+||+++|+-
T Consensus 91 ~~~VwlNG~~vG~h 104 (182)
T d1tg7a2 91 GHSIWINETYVGSW 104 (182)
T ss_dssp CEEEEETTEEEEEE
T ss_pred eeEEEECCEEEeee
Confidence 47899999999974
No 8
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Probab=19.28 E-value=75 Score=23.53 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhhhcCCccccCccccccCCCCCcccCCCCceeEEEEeccCCC-------ceeeeeecC-CCCCCeeee
Q 039343 67 HSRFTSLVRSLLNIIAFPNIILPTCKWLSMPTQLSVTPSLGRKVTGTLFGNRRG-------HVSFAVQDD-PRSEPVLLL 138 (277)
Q Consensus 67 ~~r~~~~~RS~~~~~s~P~il~P~Ck~~~l~~~~~~~~~~~~~vTGTlFG~RrG-------rV~faiQed-p~~~P~lLL 138 (277)
-||+.+-++.+.+- ..++|.+....++ -....++|+|-..+ ++.+.+.+| |.++|.+..
T Consensus 5 ~rRl~~E~~~l~~~------~~~g~~~~p~~~n-------~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F 71 (152)
T d1jata_ 5 PKRIIKETEKLVSD------PVPGITAEPHDDN-------LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRF 71 (152)
T ss_dssp CHHHHHHHHHHHHS------CCTTEEEEEETTE-------EEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEE
T ss_pred HHHHHHHHHHHHhC------CCCCEEEEEcCCc-------cchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEe
Confidence 35666666665553 2467765433222 24677888886654 677777777 889998766
Q ss_pred ee
Q 039343 139 EL 140 (277)
Q Consensus 139 EL 140 (277)
.-
T Consensus 72 ~t 73 (152)
T d1jata_ 72 LT 73 (152)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 9
>d1npba_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA) {Serratia marcescens [TaxId: 615]}
Probab=16.85 E-value=27 Score=24.01 Aligned_cols=11 Identities=45% Similarity=1.138 Sum_probs=9.5
Q ss_pred ceeeeecCCCC
Q 039343 255 EAFYMLNPDNN 265 (277)
Q Consensus 255 EsfyMinPdg~ 265 (277)
.+||+.|||||
T Consensus 100 ~~~~~~DPdGn 110 (140)
T d1npba_ 100 ASFYFLDPDGH 110 (140)
T ss_dssp EEEEEECTTCC
T ss_pred eEEEEECCCCC
Confidence 46899999997
No 10
>d2pjsa1 d.32.1.2 (A:3-113) Uncharacterized protein Atu1953 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=16.82 E-value=24 Score=22.82 Aligned_cols=11 Identities=9% Similarity=0.464 Sum_probs=9.5
Q ss_pred ceeeeecCCCC
Q 039343 255 EAFYMLNPDNN 265 (277)
Q Consensus 255 EsfyMinPdg~ 265 (277)
..||+-|||||
T Consensus 96 ~~~~~~DP~Gn 106 (111)
T d2pjsa1 96 QRLFLRDPFGK 106 (111)
T ss_dssp EEEEEECTTSC
T ss_pred EEEEEECCCCC
Confidence 47899999997
Done!