Query 039346
Match_columns 71
No_of_seqs 106 out of 1465
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 08:48:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05022 S-100A13 S-100A13: S-1 99.6 1.8E-15 3.9E-20 70.2 6.3 65 2-66 12-79 (89)
2 PF13499 EF-hand_7: EF-hand do 99.6 7.6E-15 1.7E-19 64.7 6.2 59 2-60 4-66 (66)
3 cd05027 S-100B S-100B: S-100B 99.6 4.4E-14 9.5E-19 65.5 7.3 65 2-66 12-83 (88)
4 COG5126 FRQ1 Ca2+-binding prot 99.5 5.3E-14 1.1E-18 71.0 6.6 61 2-62 96-156 (160)
5 KOG0027 Calmodulin and related 99.5 1.1E-13 2.3E-18 69.7 6.8 61 2-62 89-149 (151)
6 cd05029 S-100A6 S-100A6: S-100 99.5 4.5E-13 9.8E-18 62.1 7.6 65 2-66 14-83 (88)
7 smart00027 EH Eps15 homology d 99.5 5.2E-13 1.1E-17 62.7 7.6 67 2-70 14-82 (96)
8 cd00052 EH Eps15 homology doma 99.5 5.5E-13 1.2E-17 58.6 7.2 62 1-64 2-63 (67)
9 PF13833 EF-hand_8: EF-hand do 99.5 9.2E-13 2E-17 55.9 7.2 52 11-62 1-53 (54)
10 KOG0027 Calmodulin and related 99.5 5.4E-13 1.2E-17 67.1 7.2 63 2-64 12-74 (151)
11 cd05026 S-100Z S-100Z: S-100Z 99.5 9.3E-13 2E-17 61.6 7.0 65 2-66 14-85 (93)
12 cd05025 S-100A1 S-100A1: S-100 99.5 1.2E-12 2.6E-17 61.1 7.3 65 2-66 13-84 (92)
13 cd05031 S-100A10_like S-100A10 99.5 8.8E-13 1.9E-17 61.8 6.7 63 2-64 12-81 (94)
14 cd00051 EFh EF-hand, calcium b 99.4 8E-12 1.7E-16 53.5 7.1 59 2-60 4-62 (63)
15 PF14658 EF-hand_9: EF-hand do 99.4 9.2E-12 2E-16 54.5 7.1 61 2-62 2-64 (66)
16 cd00213 S-100 S-100: S-100 dom 99.4 4.9E-12 1.1E-16 58.5 6.6 64 2-65 12-82 (88)
17 KOG0037 Ca2+-binding protein, 99.4 6.8E-12 1.5E-16 65.7 7.3 64 2-65 128-191 (221)
18 cd05023 S-100A11 S-100A11: S-1 99.3 5.2E-11 1.1E-15 55.3 7.4 65 2-66 13-84 (89)
19 COG5126 FRQ1 Ca2+-binding prot 99.3 2.8E-11 6E-16 61.3 6.8 62 2-64 24-85 (160)
20 KOG0030 Myosin essential light 99.2 4E-11 8.7E-16 59.1 5.6 66 1-66 14-81 (152)
21 PTZ00184 calmodulin; Provision 99.2 7.6E-11 1.6E-15 58.6 6.7 60 2-61 88-147 (149)
22 PTZ00183 centrin; Provisional 99.2 6.9E-11 1.5E-15 59.3 6.5 61 2-62 94-154 (158)
23 PTZ00183 centrin; Provisional 99.2 1.3E-10 2.7E-15 58.4 7.4 62 2-63 21-82 (158)
24 PTZ00184 calmodulin; Provision 99.2 9.7E-11 2.1E-15 58.2 6.9 62 2-63 15-76 (149)
25 cd00252 SPARC_EC SPARC_EC; ext 99.2 7.9E-11 1.7E-15 57.1 6.2 55 3-61 53-107 (116)
26 cd05030 calgranulins Calgranul 99.2 2.5E-10 5.5E-15 52.9 6.7 65 2-66 12-83 (88)
27 KOG0037 Ca2+-binding protein, 99.2 2.6E-10 5.6E-15 59.9 6.6 67 2-68 61-128 (221)
28 KOG0028 Ca2+-binding protein ( 99.2 2.2E-10 4.7E-15 57.8 5.9 61 2-62 110-170 (172)
29 KOG0044 Ca2+ sensor (EF-Hand s 99.1 3.9E-10 8.4E-15 58.8 6.4 65 2-66 68-132 (193)
30 KOG0034 Ca2+/calmodulin-depend 99.1 8.5E-10 1.9E-14 57.3 6.7 60 3-62 109-175 (187)
31 KOG0041 Predicted Ca2+-binding 99.0 1.9E-09 4.2E-14 56.3 6.4 64 2-65 103-166 (244)
32 KOG0028 Ca2+-binding protein ( 99.0 6.7E-09 1.5E-13 52.5 7.1 62 2-63 37-98 (172)
33 cd05024 S-100A10 S-100A10: A s 99.0 1.8E-08 3.9E-13 46.9 7.7 64 2-66 12-80 (91)
34 PF14788 EF-hand_10: EF hand; 99.0 1.2E-08 2.6E-13 42.6 6.0 49 15-63 2-50 (51)
35 PLN02964 phosphatidylserine de 98.9 6.6E-09 1.4E-13 62.1 7.0 61 2-62 183-243 (644)
36 KOG0031 Myosin regulatory ligh 98.9 1.6E-08 3.5E-13 50.9 6.8 61 2-62 105-165 (171)
37 KOG0030 Myosin essential light 98.9 8.5E-09 1.8E-13 51.1 5.4 57 3-60 93-149 (152)
38 PF00036 EF-hand_1: EF hand; 98.9 7.9E-09 1.7E-13 38.6 3.9 28 35-62 1-28 (29)
39 KOG0031 Myosin regulatory ligh 98.8 5.9E-08 1.3E-12 48.9 6.0 55 2-60 36-90 (171)
40 PF12763 EF-hand_4: Cytoskelet 98.8 2.8E-07 6.1E-12 44.0 8.0 60 2-64 14-73 (104)
41 PF00036 EF-hand_1: EF hand; 98.8 1.4E-08 3.1E-13 37.9 2.8 26 2-27 4-29 (29)
42 KOG0036 Predicted mitochondria 98.7 1.3E-07 2.8E-12 54.0 6.1 59 2-60 86-144 (463)
43 KOG0044 Ca2+ sensor (EF-Hand s 98.7 1.3E-07 2.8E-12 49.5 5.6 60 3-62 105-175 (193)
44 PF13405 EF-hand_6: EF-hand do 98.7 2.7E-08 5.9E-13 37.6 2.3 27 2-28 4-31 (31)
45 PLN02964 phosphatidylserine de 98.7 1.8E-07 3.9E-12 56.2 6.7 58 2-63 147-208 (644)
46 KOG0377 Protein serine/threoni 98.6 5.6E-07 1.2E-11 52.2 6.8 64 2-65 551-618 (631)
47 PRK12309 transaldolase/EF-hand 98.5 8.3E-07 1.8E-11 50.9 6.0 51 2-65 338-388 (391)
48 KOG0036 Predicted mitochondria 98.5 1.1E-06 2.3E-11 50.4 6.3 61 2-62 18-79 (463)
49 KOG0034 Ca2+/calmodulin-depend 98.5 2.4E-06 5.1E-11 44.7 7.1 64 2-65 70-135 (187)
50 KOG0040 Ca2+-binding actin-bun 98.5 7.6E-07 1.6E-11 57.6 5.8 60 3-62 2258-2324(2399)
51 PF10591 SPARC_Ca_bdg: Secrete 98.4 5.2E-08 1.1E-12 47.1 0.6 55 3-59 59-113 (113)
52 PF13202 EF-hand_5: EF hand; P 98.4 2.7E-07 6E-12 33.3 1.9 22 2-23 3-24 (25)
53 KOG0038 Ca2+-binding kinase in 98.4 2.6E-06 5.6E-11 42.9 5.2 61 3-63 113-178 (189)
54 PF13202 EF-hand_5: EF hand; P 98.3 4.6E-06 1E-10 30.0 3.8 25 36-60 1-25 (25)
55 KOG4223 Reticulocalbin, calume 98.3 1.6E-06 3.5E-11 48.2 3.6 57 2-58 245-301 (325)
56 PF13405 EF-hand_6: EF-hand do 98.2 5.9E-06 1.3E-10 31.0 4.0 27 35-61 1-27 (31)
57 KOG4251 Calcium binding protei 98.2 1.1E-06 2.3E-11 47.8 1.7 63 2-64 105-170 (362)
58 KOG0046 Ca2+-binding actin-bun 98.0 3.1E-05 6.7E-10 45.9 6.0 64 2-66 23-89 (627)
59 KOG4223 Reticulocalbin, calume 98.0 1.2E-05 2.6E-10 44.9 3.9 60 2-61 81-140 (325)
60 KOG0377 Protein serine/threoni 97.9 0.00011 2.3E-09 43.2 7.0 65 2-66 468-579 (631)
61 KOG0038 Ca2+-binding kinase in 97.9 3.3E-05 7.1E-10 39.1 4.1 66 2-67 75-141 (189)
62 smart00054 EFh EF-hand, calciu 97.7 7.3E-05 1.6E-09 26.5 2.8 25 37-61 3-27 (29)
63 smart00054 EFh EF-hand, calciu 97.6 0.00011 2.3E-09 26.0 2.5 25 2-26 4-28 (29)
64 PF09279 EF-hand_like: Phospho 97.5 0.00094 2E-08 30.4 5.3 59 2-61 4-68 (83)
65 KOG1029 Endocytic adaptor prot 97.5 0.00031 6.7E-09 43.7 4.5 61 2-64 199-259 (1118)
66 PF05517 p25-alpha: p25-alpha 97.5 0.0034 7.4E-08 32.0 7.6 59 8-66 12-73 (154)
67 PF13499 EF-hand_7: EF-hand do 97.4 0.0005 1.1E-08 29.8 3.9 29 36-64 2-30 (66)
68 PF13833 EF-hand_8: EF-hand do 97.4 0.00029 6.2E-09 29.5 3.0 25 2-26 29-53 (54)
69 KOG2643 Ca2+ binding protein, 97.3 0.00018 3.8E-09 42.0 2.0 56 11-66 401-457 (489)
70 KOG2243 Ca2+ release channel ( 97.3 0.0007 1.5E-08 45.1 4.5 67 3-70 4062-4129(5019)
71 KOG1955 Ral-GTPase effector RA 97.3 0.00079 1.7E-08 40.2 4.3 60 3-64 236-295 (737)
72 PF05042 Caleosin: Caleosin re 97.2 0.0039 8.4E-08 32.4 5.8 59 4-62 13-124 (174)
73 KOG4578 Uncharacterized conser 97.0 0.0011 2.4E-08 37.7 3.0 61 3-63 338-399 (421)
74 KOG4065 Uncharacterized conser 96.9 0.016 3.4E-07 28.5 6.4 57 3-59 72-142 (144)
75 KOG4666 Predicted phosphate ac 96.8 0.0064 1.4E-07 34.8 5.1 63 2-64 263-326 (412)
76 KOG2643 Ca2+ binding protein, 96.8 0.014 3.1E-07 34.5 6.6 62 4-66 324-388 (489)
77 PF14788 EF-hand_10: EF hand; 96.6 0.0053 1.2E-07 25.7 2.9 26 2-27 25-50 (51)
78 cd05022 S-100A13 S-100A13: S-1 96.5 0.0048 1E-07 28.7 2.9 26 2-27 51-76 (89)
79 KOG3555 Ca2+-binding proteogly 96.4 0.0047 1E-07 35.5 3.1 55 3-61 255-309 (434)
80 KOG0169 Phosphoinositide-speci 96.4 0.012 2.5E-07 36.8 4.8 63 2-64 140-202 (746)
81 KOG0042 Glycerol-3-phosphate d 96.3 0.016 3.5E-07 35.4 4.9 63 3-65 598-660 (680)
82 KOG4251 Calcium binding protei 96.3 0.0089 1.9E-07 33.0 3.6 54 6-59 289-342 (362)
83 cd05026 S-100Z S-100Z: S-100Z 96.3 0.0076 1.6E-07 28.2 2.9 26 2-27 57-82 (93)
84 cd05023 S-100A11 S-100A11: S-1 96.2 0.0085 1.8E-07 27.9 2.8 26 2-27 56-81 (89)
85 cd00252 SPARC_EC SPARC_EC; ext 96.2 0.007 1.5E-07 29.6 2.6 24 2-25 84-107 (116)
86 cd00051 EFh EF-hand, calcium b 96.1 0.019 4E-07 23.6 3.4 28 36-63 2-29 (63)
87 smart00027 EH Eps15 homology d 96.0 0.027 5.9E-07 26.3 4.1 29 34-62 10-38 (96)
88 KOG2562 Protein phosphatase 2 96.0 0.031 6.7E-07 33.3 5.0 57 4-63 284-344 (493)
89 cd00052 EH Eps15 homology doma 95.9 0.018 3.9E-07 24.6 3.0 27 37-63 2-28 (67)
90 cd05029 S-100A6 S-100A6: S-100 95.7 0.02 4.4E-07 26.5 2.9 26 2-27 55-80 (88)
91 cd05024 S-100A10 S-100A10: A s 95.5 0.026 5.6E-07 26.5 2.8 26 2-27 52-77 (91)
92 cd05030 calgranulins Calgranul 95.5 0.026 5.6E-07 26.1 2.8 26 2-27 55-80 (88)
93 cd00213 S-100 S-100: S-100 dom 95.5 0.043 9.2E-07 25.1 3.5 29 34-62 8-38 (88)
94 KOG4666 Predicted phosphate ac 95.5 0.026 5.6E-07 32.4 3.2 59 2-61 300-358 (412)
95 cd05027 S-100B S-100B: S-100B 95.4 0.055 1.2E-06 25.1 3.8 28 35-62 9-38 (88)
96 cd05025 S-100A1 S-100A1: S-100 95.4 0.06 1.3E-06 24.9 3.9 29 34-62 9-39 (92)
97 KOG2562 Protein phosphatase 2 95.3 0.056 1.2E-06 32.3 4.2 57 10-66 327-383 (493)
98 cd05031 S-100A10_like S-100A10 95.2 0.072 1.6E-06 24.8 3.9 29 34-62 8-38 (94)
99 KOG0751 Mitochondrial aspartat 95.1 0.063 1.4E-06 32.6 4.1 26 2-27 112-137 (694)
100 KOG0035 Ca2+-binding actin-bun 95.0 0.12 2.6E-06 33.3 5.3 61 2-62 751-816 (890)
101 KOG0041 Predicted Ca2+-binding 94.7 0.088 1.9E-06 28.4 3.6 29 36-64 101-129 (244)
102 KOG4347 GTPase-activating prot 94.5 0.062 1.4E-06 33.3 3.2 52 2-54 559-610 (671)
103 KOG0751 Mitochondrial aspartat 94.4 0.2 4.2E-06 30.7 4.9 55 7-63 83-137 (694)
104 PRK12309 transaldolase/EF-hand 94.4 0.056 1.2E-06 31.7 2.7 25 2-26 361-385 (391)
105 KOG3866 DNA-binding protein of 94.4 0.13 2.9E-06 29.5 4.1 60 2-61 248-323 (442)
106 PLN02952 phosphoinositide phos 93.3 0.59 1.3E-05 29.2 5.7 54 11-65 13-68 (599)
107 KOG0998 Synaptic vesicle prote 92.5 0.036 7.9E-07 35.4 0.1 62 3-66 288-349 (847)
108 KOG1707 Predicted Ras related/ 92.4 0.27 5.9E-06 30.5 3.5 59 2-63 319-378 (625)
109 KOG1029 Endocytic adaptor prot 92.3 0.82 1.8E-05 29.7 5.5 53 10-64 27-79 (1118)
110 PF08976 DUF1880: Domain of un 91.6 0.34 7.4E-06 23.8 2.8 32 30-61 3-34 (118)
111 PF09373 PMBR: Pseudomurein-bi 90.8 0.49 1.1E-05 17.8 2.4 20 48-67 2-21 (33)
112 PF12763 EF-hand_4: Cytoskelet 90.7 0.44 9.6E-06 22.9 2.7 25 2-26 47-71 (104)
113 PF12174 RST: RCD1-SRO-TAF4 (R 90.6 0.51 1.1E-05 21.1 2.7 46 20-65 11-56 (70)
114 TIGR01639 P_fal_TIGR01639 Plas 89.8 0.98 2.1E-05 19.5 4.5 52 12-68 7-58 (61)
115 PF08414 NADPH_Ox: Respiratory 89.4 1.5 3.2E-05 21.1 3.9 53 11-66 41-96 (100)
116 PF09069 EF-hand_3: EF-hand; 88.0 1.6 3.4E-05 20.6 3.3 56 3-61 8-74 (90)
117 KOG2871 Uncharacterized conser 87.6 0.46 1E-05 28.0 1.7 56 1-56 312-368 (449)
118 cd07313 terB_like_2 tellurium 87.3 2 4.4E-05 20.1 3.7 52 11-62 12-65 (104)
119 KOG0506 Glutaminase (contains 87.1 4.3 9.4E-05 25.1 5.4 59 3-61 91-157 (622)
120 KOG1954 Endocytosis/signaling 86.4 2 4.3E-05 25.9 3.8 46 12-59 457-502 (532)
121 PF14513 DAG_kinase_N: Diacylg 86.4 1.4 3E-05 22.4 2.8 49 12-62 5-60 (138)
122 COG3763 Uncharacterized protei 86.4 2 4.4E-05 19.2 3.9 33 12-44 36-68 (71)
123 KOG0040 Ca2+-binding actin-bun 85.5 11 0.00024 27.1 7.0 66 2-68 2300-2376(2399)
124 PF08461 HTH_12: Ribonuclease 84.6 2.4 5.3E-05 18.6 3.2 38 10-47 9-46 (66)
125 PRK00523 hypothetical protein; 84.4 2.7 5.9E-05 19.0 4.0 32 12-43 37-68 (72)
126 PF03672 UPF0154: Uncharacteri 84.2 2.6 5.6E-05 18.6 4.0 33 12-44 29-61 (64)
127 PRK01844 hypothetical protein; 82.6 3.4 7.3E-05 18.7 3.8 32 13-44 37-68 (72)
128 KOG1265 Phospholipase C [Lipid 82.0 11 0.00025 25.3 5.9 59 2-60 225-297 (1189)
129 PF05042 Caleosin: Caleosin re 81.6 6.1 0.00013 21.0 5.7 58 2-60 100-164 (174)
130 PF07308 DUF1456: Protein of u 79.3 4.5 9.7E-05 18.0 5.2 49 15-63 14-62 (68)
131 KOG4004 Matricellular protein 78.9 1.1 2.5E-05 24.3 0.9 54 6-61 195-249 (259)
132 PLN02222 phosphoinositide phos 78.9 14 0.0003 23.5 6.0 57 3-61 30-89 (581)
133 KOG0998 Synaptic vesicle prote 77.2 2.2 4.8E-05 27.9 2.0 63 2-66 15-77 (847)
134 PF00404 Dockerin_1: Dockerin 75.7 3 6.5E-05 14.1 2.4 13 9-21 2-14 (21)
135 PF08726 EFhand_Ca_insen: Ca2+ 75.4 3.6 7.8E-05 18.4 1.9 49 2-58 10-65 (69)
136 KOG4347 GTPase-activating prot 75.3 14 0.0003 23.8 4.8 51 14-64 534-585 (671)
137 PF11116 DUF2624: Protein of u 75.2 7.2 0.00016 18.2 6.6 52 13-64 13-64 (85)
138 PF02761 Cbl_N2: CBL proto-onc 74.6 7.5 0.00016 18.2 6.4 55 12-66 20-74 (85)
139 KOG3449 60S acidic ribosomal p 74.1 8.9 0.00019 18.8 4.7 42 3-44 6-47 (112)
140 PLN02230 phosphoinositide phos 73.6 21 0.00045 22.8 6.1 59 2-61 33-101 (598)
141 PLN02228 Phosphoinositide phos 72.9 21 0.00046 22.6 6.4 57 3-61 29-91 (567)
142 PF03979 Sigma70_r1_1: Sigma-7 72.0 8.3 0.00018 17.6 2.9 34 11-46 18-51 (82)
143 KOG3077 Uncharacterized conser 71.0 17 0.00037 20.7 5.5 56 7-62 74-129 (260)
144 KOG4070 Putative signal transd 70.8 7.1 0.00015 20.4 2.5 52 14-65 33-88 (180)
145 PF15144 DUF4576: Domain of un 70.3 2.7 5.8E-05 19.3 0.9 44 10-54 36-79 (88)
146 TIGR01848 PHA_reg_PhaR polyhyd 65.7 15 0.00032 18.0 5.3 51 6-56 11-71 (107)
147 PRK09430 djlA Dna-J like membr 64.9 23 0.00051 20.0 4.5 52 10-62 67-120 (267)
148 PF01885 PTS_2-RNA: RNA 2'-pho 63.8 21 0.00046 19.1 4.1 36 9-44 27-62 (186)
149 PF10437 Lip_prot_lig_C: Bacte 63.4 14 0.0003 16.8 3.9 44 15-60 42-86 (86)
150 PF06207 DUF1002: Protein of u 60.9 27 0.00059 19.4 3.9 47 16-62 173-223 (225)
151 PF09068 EF-hand_2: EF hand; 60.1 21 0.00045 17.9 6.1 59 3-61 46-124 (127)
152 KOG0169 Phosphoinositide-speci 59.4 49 0.0011 21.9 5.8 57 3-63 177-233 (746)
153 PF05099 TerB: Tellurite resis 58.9 5.9 0.00013 19.5 1.0 17 11-27 36-52 (140)
154 PF07879 PHB_acc_N: PHB/PHA ac 58.2 12 0.00026 16.6 1.7 21 6-26 11-31 (64)
155 KOG2116 Protein involved in pl 57.6 18 0.00039 23.5 3.0 40 10-49 536-576 (738)
156 PF11020 DUF2610: Domain of un 56.5 20 0.00044 16.6 4.8 51 12-62 26-77 (82)
157 PF02885 Glycos_trans_3N: Glyc 56.0 17 0.00038 15.7 4.1 14 13-26 13-26 (66)
158 PRK00819 RNA 2'-phosphotransfe 55.6 31 0.00067 18.4 4.3 34 9-42 28-61 (179)
159 PF11829 DUF3349: Protein of u 55.6 23 0.0005 17.0 3.1 34 15-48 20-53 (96)
160 TIGR02675 tape_meas_nterm tape 54.6 19 0.00041 16.2 2.2 16 11-26 27-42 (75)
161 PF08235 LNS2: LNS2 (Lipin/Ned 54.5 9.6 0.00021 19.9 1.3 35 12-46 7-42 (157)
162 PRK09389 (R)-citramalate synth 54.4 51 0.0011 20.5 5.2 48 17-64 320-369 (488)
163 PF09336 Vps4_C: Vps4 C termin 53.3 20 0.00043 15.5 2.5 25 14-38 29-53 (62)
164 PF14237 DUF4339: Domain of un 52.9 7.1 0.00015 15.5 0.6 19 8-26 7-25 (45)
165 cd06403 PB1_Par6 The PB1 domai 52.4 8.4 0.00018 17.8 0.8 23 43-65 14-36 (80)
166 KOG3741 Poly(A) ribonuclease s 50.9 45 0.00099 21.5 3.8 58 3-65 591-650 (655)
167 PTZ00373 60S Acidic ribosomal 50.9 31 0.00067 17.0 4.8 38 7-44 12-49 (112)
168 cd07176 terB tellurite resista 49.5 16 0.00036 17.0 1.6 17 11-27 15-31 (111)
169 PF01397 Terpene_synth: Terpen 48.4 43 0.00093 17.9 5.1 58 14-71 46-108 (183)
170 KOG4286 Dystrophin-like protei 48.3 49 0.0011 22.2 3.8 46 4-49 476-521 (966)
171 COG4103 Uncharacterized protei 47.9 41 0.00088 17.5 4.1 50 11-60 41-92 (148)
172 PF06226 DUF1007: Protein of u 47.1 30 0.00065 18.8 2.5 23 5-27 57-79 (212)
173 PF09061 Stirrup: Stirrup; In 46.8 13 0.00028 16.5 0.9 30 13-42 48-77 (79)
174 PF08355 EF_assoc_1: EF hand a 46.5 31 0.00067 15.7 2.3 21 44-64 12-32 (76)
175 PHA00649 hypothetical protein 45.3 32 0.00069 15.5 3.1 31 36-66 19-49 (83)
176 COG2008 GLY1 Threonine aldolas 42.9 16 0.00034 21.6 1.1 62 7-70 104-166 (342)
177 PF01023 S_100: S-100/ICaBP ty 42.9 27 0.00058 14.0 4.1 15 47-61 21-35 (44)
178 TIGR03573 WbuX N-acetyl sugar 41.8 73 0.0016 18.7 5.1 33 12-44 300-332 (343)
179 PF13623 SurA_N_2: SurA N-term 41.6 51 0.0011 16.9 3.7 35 24-58 99-143 (145)
180 PF12419 DUF3670: SNF2 Helicas 41.0 51 0.0011 16.7 5.0 49 11-59 80-138 (141)
181 cd07316 terB_like_DjlA N-termi 40.9 41 0.00089 15.6 5.4 52 11-62 12-64 (106)
182 COG5562 Phage envelope protein 40.8 16 0.00035 18.7 0.9 26 39-64 77-102 (137)
183 PLN02223 phosphoinositide phos 40.7 97 0.0021 19.8 5.6 59 2-61 20-91 (537)
184 PRK09462 fur ferric uptake reg 40.7 51 0.0011 16.6 4.5 30 11-40 30-59 (148)
185 PF02269 TFIID-18kDa: Transcri 40.5 12 0.00026 17.6 0.4 19 44-62 48-66 (93)
186 KOG4301 Beta-dystrobrevin [Cyt 40.5 66 0.0014 19.4 3.3 58 6-64 118-175 (434)
187 COG0541 Ffh Signal recognition 39.9 34 0.00074 21.2 2.2 48 17-67 296-343 (451)
188 KOG4403 Cell surface glycoprot 39.6 91 0.002 19.6 3.8 54 4-61 74-128 (575)
189 cd03035 ArsC_Yffb Arsenate Red 39.5 42 0.0009 16.0 2.2 46 13-61 34-82 (105)
190 PF08002 DUF1697: Protein of u 39.2 24 0.00051 17.8 1.3 20 10-29 14-33 (137)
191 COG2818 Tag 3-methyladenine DN 38.5 22 0.00048 19.2 1.2 31 2-32 59-89 (188)
192 cd05833 Ribosomal_P2 Ribosomal 38.0 54 0.0012 16.1 4.7 39 6-44 9-47 (109)
193 PF10256 Erf4: Golgin subfamil 37.6 49 0.0011 16.0 2.3 19 48-66 27-45 (118)
194 COG5083 SMP2 Uncharacterized p 37.3 39 0.00084 21.2 2.1 37 10-46 381-418 (580)
195 PF08708 PriCT_1: Primase C te 36.7 42 0.00092 14.5 4.5 32 36-67 38-69 (71)
196 COG4339 Uncharacterized protei 36.7 73 0.0016 17.2 5.7 52 15-66 4-55 (208)
197 KOG0871 Class 2 transcription 36.4 68 0.0015 16.8 3.0 54 8-61 60-124 (156)
198 cd07894 Adenylation_RNA_ligase 36.2 96 0.0021 18.5 3.7 44 4-47 131-184 (342)
199 KOG0869 CCAAT-binding factor, 36.0 71 0.0015 16.9 3.4 34 10-43 82-115 (168)
200 PF02037 SAP: SAP domain; Int 35.6 32 0.0007 12.9 2.2 17 15-31 4-20 (35)
201 PF09066 B2-adapt-app_C: Beta2 35.5 32 0.0007 16.4 1.4 18 47-64 3-20 (114)
202 PF09454 Vps23_core: Vps23 cor 35.2 47 0.001 14.6 2.3 19 47-65 36-54 (65)
203 PF14164 YqzH: YqzH-like prote 35.1 48 0.001 14.7 4.1 30 35-64 9-39 (64)
204 PF09967 DUF2201: VWA-like dom 34.1 53 0.0011 16.2 2.1 17 10-26 6-22 (126)
205 PF07199 DUF1411: Protein of u 34.0 85 0.0018 17.2 4.9 55 9-63 133-187 (194)
206 cd06404 PB1_aPKC PB1 domain is 33.9 58 0.0013 15.2 4.7 39 13-51 18-76 (83)
207 PF02864 STAT_bind: STAT prote 33.9 96 0.0021 17.7 5.1 46 13-58 177-231 (254)
208 PF15017 AF1Q: Drug resistance 33.7 27 0.00058 16.5 0.9 14 10-23 71-84 (87)
209 cd08324 CARD_NOD1_CARD4 Caspas 33.5 60 0.0013 15.3 5.4 49 11-64 26-74 (85)
210 PF01212 Beta_elim_lyase: Beta 32.7 9.5 0.00021 21.7 -0.7 55 13-69 104-160 (290)
211 KOG0039 Ferric reductase, NADH 31.4 1.5E+02 0.0033 19.3 4.7 44 15-64 4-47 (646)
212 PF05383 La: La domain; Inter 31.2 53 0.0012 14.1 1.6 21 38-58 19-39 (61)
213 PF01383 CpcD: CpcD/allophycoc 31.1 53 0.0011 13.9 2.4 19 51-69 31-49 (56)
214 PRK00771 signal recognition pa 30.9 87 0.0019 19.3 2.9 20 48-67 317-336 (437)
215 COG3426 Butyrate kinase [Energ 30.8 1.2E+02 0.0026 18.0 3.8 30 7-38 211-240 (358)
216 smart00513 SAP Putative DNA-bi 30.4 41 0.00089 12.4 2.4 18 14-31 3-20 (35)
217 PRK14981 DNA-directed RNA poly 30.3 76 0.0017 15.5 3.8 32 32-67 80-111 (112)
218 PF01475 FUR: Ferric uptake re 29.4 76 0.0017 15.2 3.9 32 12-43 21-52 (120)
219 PF11593 Med3: Mediator comple 29.4 1.4E+02 0.003 18.2 4.7 52 13-66 6-58 (379)
220 PF13592 HTH_33: Winged helix- 29.3 57 0.0012 13.7 3.6 32 13-44 3-35 (60)
221 PF13829 DUF4191: Domain of un 29.1 1.1E+02 0.0025 17.1 4.1 37 9-45 162-198 (224)
222 PF07862 Nif11: Nitrogen fixat 29.1 52 0.0011 13.2 2.7 20 16-35 28-47 (49)
223 PF09808 SNAPc_SNAP43: Small n 28.9 1E+02 0.0022 16.5 3.1 10 51-60 19-28 (194)
224 COG2979 Uncharacterized protei 28.7 1.1E+02 0.0024 17.1 2.8 21 10-30 122-142 (225)
225 TIGR01529 argR_whole arginine 28.4 94 0.002 15.9 4.1 34 11-44 13-46 (146)
226 PF00627 UBA: UBA/TS-N domain; 28.3 46 0.001 12.4 1.6 25 18-45 4-28 (37)
227 smart00549 TAFH TAF homology. 28.0 81 0.0018 15.1 2.7 15 12-26 37-51 (92)
228 TIGR01425 SRP54_euk signal rec 27.6 1.3E+02 0.0029 18.6 3.3 20 48-67 324-343 (429)
229 PF04391 DUF533: Protein of un 27.5 1.1E+02 0.0024 16.6 2.7 20 10-29 91-110 (188)
230 PF09851 SHOCT: Short C-termin 27.3 47 0.001 12.1 2.0 14 12-25 14-27 (31)
231 PRK10867 signal recognition pa 27.2 1.6E+02 0.0035 18.2 3.7 19 49-67 326-344 (433)
232 PF03874 RNA_pol_Rpb4: RNA pol 27.2 85 0.0018 15.1 2.7 18 49-66 99-116 (117)
233 PF00690 Cation_ATPase_N: Cati 26.4 69 0.0015 13.7 3.3 30 16-45 5-35 (69)
234 PLN00138 large subunit ribosom 26.2 96 0.0021 15.3 4.7 35 10-44 13-47 (113)
235 KOG1265 Phospholipase C [Lipid 26.0 2.4E+02 0.0052 19.9 4.9 45 17-64 207-251 (1189)
236 KOG2301 Voltage-gated Ca2+ cha 26.0 86 0.0019 23.0 2.5 31 34-64 1417-1447(1592)
237 PF06384 ICAT: Beta-catenin-in 25.6 85 0.0018 14.5 2.7 20 19-38 21-40 (78)
238 COG0848 ExbD Biopolymer transp 25.5 97 0.0021 15.8 2.2 25 45-69 102-126 (137)
239 TIGR00959 ffh signal recogniti 25.5 1.2E+02 0.0026 18.7 2.8 19 49-67 325-343 (428)
240 PF09693 Phage_XkdX: Phage unc 25.1 60 0.0013 12.6 1.3 13 12-24 24-36 (40)
241 PF05901 Excalibur: Excalibur 25.1 37 0.00081 13.0 0.6 9 6-14 26-34 (37)
242 KOG2419 Phosphatidylserine dec 24.9 74 0.0016 21.1 2.0 59 3-61 442-532 (975)
243 TIGR00135 gatC glutamyl-tRNA(G 24.8 89 0.0019 14.5 3.8 22 16-37 2-23 (93)
244 TIGR03798 ocin_TIGR03798 bacte 24.6 76 0.0016 13.6 3.2 26 14-39 24-49 (64)
245 KOG2463 Predicted RNA-binding 24.6 57 0.0012 19.5 1.4 21 8-28 177-197 (376)
246 PF05788 Orbi_VP1: Orbivirus R 24.3 1.2E+02 0.0026 21.5 2.8 36 11-46 1134-1169(1301)
247 PF12588 PSDC: Phophatidylseri 24.1 1.2E+02 0.0026 15.7 4.7 47 18-66 6-58 (141)
248 PF02459 Adeno_terminal: Adeno 24.1 1.6E+02 0.0034 19.0 3.1 39 7-45 464-502 (548)
249 COG2162 NhoA Arylamine N-acety 24.0 1.6E+02 0.0035 17.2 6.1 68 3-70 9-88 (275)
250 cd07153 Fur_like Ferric uptake 24.0 97 0.0021 14.6 4.4 32 12-43 14-45 (116)
251 PF05338 DUF717: Protein of un 23.7 80 0.0017 13.6 1.9 19 15-33 2-20 (55)
252 PRK11858 aksA trans-homoaconit 23.7 1.8E+02 0.0038 17.5 5.7 48 18-65 323-373 (378)
253 TIGR01209 RNA ligase, Pab1020 23.5 1.9E+02 0.004 17.7 3.6 49 4-52 163-222 (374)
254 PF08044 DUF1707: Domain of un 23.3 78 0.0017 13.2 3.1 29 11-39 20-48 (53)
255 PF04282 DUF438: Family of unk 23.2 92 0.002 14.1 5.2 42 16-60 14-55 (71)
256 PF02309 AUX_IAA: AUX/IAA fami 23.1 28 0.0006 18.9 0.0 17 49-65 186-202 (215)
257 PF14178 YppF: YppF-like prote 22.7 88 0.0019 13.7 2.4 19 49-67 35-53 (60)
258 PF01498 HTH_Tnp_Tc3_2: Transp 22.4 86 0.0019 13.4 2.7 33 12-44 11-43 (72)
259 PF13121 DUF3976: Domain of un 22.2 57 0.0012 12.7 0.8 19 8-26 8-26 (41)
260 PF10260 SAYSvFN: Uncharacteri 22.0 82 0.0018 14.3 1.4 9 13-21 59-67 (71)
261 PF04444 Dioxygenase_N: Catech 21.9 1E+02 0.0022 14.0 1.9 19 49-67 22-40 (74)
262 PF08100 Dimerisation: Dimeris 21.8 83 0.0018 13.1 2.1 23 3-25 11-33 (51)
263 KOG1264 Phospholipase C [Lipid 21.5 1.3E+02 0.0029 20.8 2.6 54 8-63 154-209 (1267)
264 PLN03228 methylthioalkylmalate 21.5 2.3E+02 0.005 18.0 4.7 45 18-62 430-476 (503)
265 PF07624 PSD2: Protein of unkn 21.5 99 0.0021 13.8 4.9 13 14-26 6-18 (76)
266 PRK00034 gatC aspartyl/glutamy 21.4 1.1E+02 0.0023 14.2 3.9 24 15-38 3-26 (95)
267 PF10891 DUF2719: Protein of u 21.2 1.1E+02 0.0024 14.2 2.8 21 45-65 30-50 (81)
268 PF08640 U3_assoc_6: U3 small 21.2 1.1E+02 0.0023 14.1 3.8 45 10-60 12-56 (83)
269 PF07531 TAFH: NHR1 homology t 20.8 1.2E+02 0.0027 14.6 3.0 15 12-26 38-52 (96)
270 PRK00441 argR arginine repress 20.7 1.4E+02 0.0031 15.4 4.0 34 11-44 15-48 (149)
271 COG3860 Uncharacterized protei 20.6 1.2E+02 0.0025 14.3 3.0 19 28-46 44-62 (89)
272 COG0735 Fur Fe2+/Zn2+ uptake r 20.6 1.4E+02 0.003 15.2 4.7 30 13-42 35-64 (145)
273 PF12631 GTPase_Cys_C: Catalyt 20.4 1E+02 0.0022 13.6 2.7 8 33-40 62-69 (73)
274 PF10281 Ish1: Putative stress 20.4 75 0.0016 12.0 4.0 14 17-30 6-19 (38)
275 TIGR02267 Myxococcus xanthus p 20.3 1.4E+02 0.003 15.1 2.1 19 51-69 5-23 (123)
276 PF13098 Thioredoxin_2: Thiore 20.3 98 0.0021 14.3 1.6 13 12-24 100-112 (112)
277 TIGR03296 M6dom_TIGR03296 M6 f 20.1 47 0.001 19.0 0.5 16 4-19 92-107 (286)
No 1
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.64 E-value=1.8e-15 Score=70.22 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=59.5
Q ss_pred hHHhhhhc-cCCCcccHHHHHHHHHh-hCCCCcH-HHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 2 AWLRRYDT-DGDGRLTKQELQDAFKS-LGSTFPA-WRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 2 ~~f~~~d~-~~~g~i~~~el~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
.+|+.||+ +++|+|+..||+.++.. ++..++. .+++.+++..|.+++|.|+|+||+.++..+...
T Consensus 12 ~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 12 SNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 57999999 99999999999999998 8887877 899999999999999999999999999877643
No 2
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.60 E-value=7.6e-15 Score=64.66 Aligned_cols=59 Identities=34% Similarity=0.579 Sum_probs=51.6
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHH----HHHHHHHhhcCCCCCeeeHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAW----RAWRALRHADANGDGCINEDELRELV 60 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~ef~~~~ 60 (71)
++|..+|++++|.|+.+|+..++..++...+.. .++.+++.+|.+++|.|+++||..++
T Consensus 4 ~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 4 EAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 689999999999999999999999988765444 45566999999999999999999864
No 3
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.57 E-value=4.4e-14 Score=65.52 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=59.2
Q ss_pred hHHhhhh-ccCCC-cccHHHHHHHHHh-----hCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 2 AWLRRYD-TDGDG-RLTKQELQDAFKS-----LGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 2 ~~f~~~d-~~~~g-~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
++|..+| ++++| .|+..+|+.+|+. ++...+..++..+++..+.+++|.|+|++|+.++..+...
T Consensus 12 ~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~ 83 (88)
T cd05027 12 DVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTA 83 (88)
T ss_pred HHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 5799998 79999 6999999999998 8888889999999999999999999999999999877654
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.54 E-value=5.3e-14 Score=71.03 Aligned_cols=61 Identities=31% Similarity=0.521 Sum_probs=57.9
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
.+|+.||.+++|+|+..++..++..+|..+++++++.+++.++.+++|.|++++|...+..
T Consensus 96 ~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 96 EAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999999999987653
No 5
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.52 E-value=1.1e-13 Score=69.65 Aligned_cols=61 Identities=30% Similarity=0.521 Sum_probs=58.1
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
++|+.+|++++|+|+.+||+.++..+|...+..++..+++..+.+++|.|+|++|+.++..
T Consensus 89 eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 89 EAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999999999998753
No 6
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.50 E-value=4.5e-13 Score=62.13 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=58.1
Q ss_pred hHHhhhhc-cC-CCcccHHHHHHHHHh---hCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 2 AWLRRYDT-DG-DGRLTKQELQDAFKS---LGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 2 ~~f~~~d~-~~-~g~i~~~el~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
.+|+.|+. ++ +|+|+.+||+.++.. +|..++..++..+++..+.+++|.|+|++|+.++..+..-
T Consensus 14 ~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 14 AIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 57889987 66 799999999999963 6888999999999999999999999999999999888754
No 7
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.49 E-value=5.2e-13 Score=62.75 Aligned_cols=67 Identities=22% Similarity=0.423 Sum_probs=58.7
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh--cccC
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR--GYAL 70 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~--~~~~ 70 (71)
++|..+|++++|.|+.++++.+++..+ ++..++..++..++.+.+|.|++++|+.++..+.++ +.+|
T Consensus 14 ~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~ 82 (96)
T smart00027 14 QIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPI 82 (96)
T ss_pred HHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCC
Confidence 578999999999999999999998854 678889999999999999999999999999877755 4443
No 8
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.49 E-value=5.5e-13 Score=58.65 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=55.6
Q ss_pred ChHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 1 MAWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 1 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
+++|..+|++++|.|+.+|+..++..++. +..++..++..++.+++|.|++++|..++..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 36799999999999999999999988754 788899999999999999999999999887655
No 9
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.48 E-value=9.2e-13 Score=55.95 Aligned_cols=52 Identities=31% Similarity=0.531 Sum_probs=48.5
Q ss_pred CCCcccHHHHHHHHHhhCCC-CcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 11 GDGRLTKQELQDAFKSLGST-FPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
++|.|+.++|+.++..+|.. ++..+++.++..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888988 99999999999999999999999999998864
No 10
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.47 E-value=5.4e-13 Score=67.11 Aligned_cols=63 Identities=27% Similarity=0.484 Sum_probs=60.0
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
++|..+|++++|.|+..++..+++.+|..++..++..++..++.+++|.|++++|+.++....
T Consensus 12 ~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 12 EAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred HHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 689999999999999999999999999999999999999999999999999999999987654
No 11
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.46 E-value=9.3e-13 Score=61.65 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=55.1
Q ss_pred hHHhhhh-ccCCC-cccHHHHHHHHHh-h----CCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 2 AWLRRYD-TDGDG-RLTKQELQDAFKS-L----GSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 2 ~~f~~~d-~~~~g-~i~~~el~~~l~~-~----~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
++|+.|| ++++| .|+..||+.++.. + +...+..++..+++.+|.+++|.|+++||+.++..+...
T Consensus 14 ~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 14 RIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 5799998 78998 5999999999976 3 333467789999999999999999999999999887643
No 12
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.46 E-value=1.2e-12 Score=61.11 Aligned_cols=65 Identities=26% Similarity=0.369 Sum_probs=56.5
Q ss_pred hHHhhhh-ccCCC-cccHHHHHHHHHh-hC----CCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 2 AWLRRYD-TDGDG-RLTKQELQDAFKS-LG----STFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 2 ~~f~~~d-~~~~g-~i~~~el~~~l~~-~~----~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
++|..+| ++++| .|+..|++.+++. ++ ..++..+++.+++.++.+++|.|++++|+.++..+...
T Consensus 13 ~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~ 84 (92)
T cd05025 13 NVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVA 84 (92)
T ss_pred HHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHH
Confidence 6899997 99999 5999999999975 44 34578899999999999999999999999999877654
No 13
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.45 E-value=8.8e-13 Score=61.79 Aligned_cols=63 Identities=25% Similarity=0.373 Sum_probs=55.2
Q ss_pred hHHhhhhc-cC-CCcccHHHHHHHHHh-----hCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 2 AWLRRYDT-DG-DGRLTKQELQDAFKS-----LGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 2 ~~f~~~d~-~~-~g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
.+|..+|. ++ +|.|+..|++.++.. ++..++..++..+++.++.+++|.|++++|+.++....
T Consensus 12 ~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 12 LTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 57899996 87 699999999999986 46677889999999999999999999999999886543
No 14
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.39 E-value=8e-12 Score=53.53 Aligned_cols=59 Identities=37% Similarity=0.598 Sum_probs=54.7
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELV 60 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 60 (71)
.+|..+|.+++|.++.+++..++..++...+...+..++..++.+++|.|++++|..++
T Consensus 4 ~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 4 EAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 57888999999999999999999999999999999999999999999999999998764
No 15
>PF14658 EF-hand_9: EF-hand domain
Probab=99.39 E-value=9.2e-12 Score=54.52 Aligned_cols=61 Identities=16% Similarity=0.292 Sum_probs=56.6
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCC-CCcHHHHHHHHHhhcCCCC-CeeeHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGS-TFPAWRAWRALRHADANGD-GCINEDELRELVKY 62 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~i~~~ef~~~~~~ 62 (71)
..|..+|+++.|.|...++...|+.++. .+.+.+++.+.+.+|+++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4689999999999999999999999877 8889999999999999988 99999999998865
No 16
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.38 E-value=4.9e-12 Score=58.54 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=55.2
Q ss_pred hHHhhhhc--cCCCcccHHHHHHHHHh-hCCC----CcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHH
Q 039346 2 AWLRRYDT--DGDGRLTKQELQDAFKS-LGST----FPAWRAWRALRHADANGDGCINEDELRELVKYVIK 65 (71)
Q Consensus 2 ~~f~~~d~--~~~g~i~~~el~~~l~~-~~~~----~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 65 (71)
++|..+|+ +++|.|+..++..++.. ++.. .+..++..++..++.+++|.|++++|+.++..+.+
T Consensus 12 ~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 12 DVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 57999999 79999999999999976 4543 34888999999999999999999999998876643
No 17
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.37 E-value=6.8e-12 Score=65.67 Aligned_cols=64 Identities=25% Similarity=0.349 Sum_probs=59.9
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIK 65 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 65 (71)
.+|..+|.|++|.|+..||+++|..+|..++..-.+.++++++..++|.|.|++|+.++..+..
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999888999999999999877664
No 18
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.30 E-value=5.2e-11 Score=55.34 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=54.4
Q ss_pred hHHhh-hhccCCC-cccHHHHHHHHHhh-----CCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 2 AWLRR-YDTDGDG-RLTKQELQDAFKSL-----GSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 2 ~~f~~-~d~~~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
.+|+. +|++++| .|+.+||+.++... +...+..++..+++.++.+++|.|+|+||+.++..+...
T Consensus 13 ~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~ 84 (89)
T cd05023 13 AVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVA 84 (89)
T ss_pred HHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 46777 6677875 99999999999874 334557889999999999999999999999999887654
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.30 E-value=2.8e-11 Score=61.29 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=56.8
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
++|..+|++++|.|+..+|..+++.+|..++..++..++..++. +.+.|++.+|+.++....
T Consensus 24 eaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 24 EAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999998 889999999999887544
No 20
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.24 E-value=4e-11 Score=59.15 Aligned_cols=66 Identities=17% Similarity=0.298 Sum_probs=59.8
Q ss_pred ChHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCC--CCCeeeHHHHHHHHHHHHHh
Q 039346 1 MAWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADAN--GDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 1 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~ef~~~~~~~~~~ 66 (71)
+++|..||..++|+|+..++..+++.+|.++++.++.+....+..+ .-.+++|++|+.++..+.+-
T Consensus 14 ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 14 KEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred HHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999999999888876 55889999999999887754
No 21
>PTZ00184 calmodulin; Provisional
Probab=99.24 E-value=7.6e-11 Score=58.55 Aligned_cols=60 Identities=28% Similarity=0.519 Sum_probs=49.2
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVK 61 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 61 (71)
.+|..+|.+++|.++.+++..++...+...+...+..++..++.+++|.|++++|..++.
T Consensus 88 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 88 EAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 467788888888888888888888877777888888888888888888888888887654
No 22
>PTZ00183 centrin; Provisional
Probab=99.24 E-value=6.9e-11 Score=59.33 Aligned_cols=61 Identities=31% Similarity=0.488 Sum_probs=53.1
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
.+|..+|++++|.|+..++..++..++..++..++..++..++.+++|.|++++|..++..
T Consensus 94 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 94 KAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 4688889999999999999999988888888888999999999888899999999887754
No 23
>PTZ00183 centrin; Provisional
Probab=99.24 E-value=1.3e-10 Score=58.39 Aligned_cols=62 Identities=26% Similarity=0.392 Sum_probs=55.6
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
.+|..+|++++|.|+..+|..++..++...+...+..++..++.+++|.|++.+|...+...
T Consensus 21 ~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 21 EAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 57888999999999999999999998887888889999999999999999999999876543
No 24
>PTZ00184 calmodulin; Provisional
Probab=99.24 E-value=9.7e-11 Score=58.17 Aligned_cols=62 Identities=29% Similarity=0.444 Sum_probs=55.4
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
+.|..+|.+++|.|+.++|..++..++..++...+..++..++.+++|.|++++|+.++...
T Consensus 15 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 15 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 56888999999999999999999888888888889999999999999999999999877643
No 25
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.23 E-value=7.9e-11 Score=57.07 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=48.4
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVK 61 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 61 (71)
.|..+|.+++|.|+.+|+..+. .......+..++..+|.+++|.|+++||..++.
T Consensus 53 ~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 53 MFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 6889999999999999999766 334467788999999999999999999999883
No 26
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.20 E-value=2.5e-10 Score=52.93 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=54.1
Q ss_pred hHHhhhhcc--CCCcccHHHHHHHHH-hhCCCCc----HHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 2 AWLRRYDTD--GDGRLTKQELQDAFK-SLGSTFP----AWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 2 ~~f~~~d~~--~~g~i~~~el~~~l~-~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
..|+.++.. ++|.|+..||+.++. .++..++ ..++..++..++.+++|.|++++|+.++..+...
T Consensus 12 ~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 12 NVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 357777754 478999999999996 4555555 8899999999999999999999999999877654
No 27
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.17 E-value=2.6e-10 Score=59.89 Aligned_cols=67 Identities=27% Similarity=0.414 Sum_probs=61.0
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHh-hCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHhcc
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKS-LGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKRGY 68 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~ 68 (71)
..|...|+++.|.|+..|++..|.. -...++.+.++.|+..++.+..|.|++.||..++..+++|+.
T Consensus 61 ~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~ 128 (221)
T KOG0037|consen 61 GWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRN 128 (221)
T ss_pred HHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999985 356788899999999999999999999999999999999964
No 28
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=2.2e-10 Score=57.76 Aligned_cols=61 Identities=28% Similarity=0.515 Sum_probs=56.8
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
.+|+.+|-+++|.|+..+|+.+...||.++++.+++.|+..++.+++|-|+-++|..++..
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 5788899999999999999999999999999999999999999999999999999988764
No 29
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.14 E-value=3.9e-10 Score=58.76 Aligned_cols=65 Identities=23% Similarity=0.312 Sum_probs=59.9
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
.+|..+|.+++|.|+..||...++.+..+..++.+...|+.+|.+++|.|+++|++.++..+...
T Consensus 68 ~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m 132 (193)
T KOG0044|consen 68 LVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQM 132 (193)
T ss_pred HHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHH
Confidence 47889999999999999999999988888889999999999999999999999999999887765
No 30
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.10 E-value=8.5e-10 Score=57.32 Aligned_cols=60 Identities=30% Similarity=0.493 Sum_probs=50.9
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhh-CCCCc--H----HHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSL-GSTFP--A----WRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~-~~~~~--~----~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
+|+.||.+++|.|+.+|+..++..+ +...+ + ..++..+..+|.+++|.|+++||...+..
T Consensus 109 aF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 109 AFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 6899999999999999999999885 54444 3 24677889999999999999999998764
No 31
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.04 E-value=1.9e-09 Score=56.28 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=59.4
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIK 65 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 65 (71)
..|..+|.+.||+|+--|++.+|.++|.+.+.-.+..+++..+.+.+|+|+|-||+-+++.+..
T Consensus 103 ~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 103 SMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred HHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 4688999999999999999999999999999999999999999999999999999999887653
No 32
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=6.7e-09 Score=52.48 Aligned_cols=62 Identities=23% Similarity=0.358 Sum_probs=54.5
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
..|..||++++|+|+.+||+-.++.+|..+...++..++..++..+.|.|.+++|...+...
T Consensus 37 e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k 98 (172)
T KOG0028|consen 37 EAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVK 98 (172)
T ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHH
Confidence 46888999999999999999999999999888898999999999899999999998876543
No 33
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.97 E-value=1.8e-08 Score=46.90 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=51.9
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHh-h----CCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKS-L----GSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~-~----~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
..|+.+. .+.+.++..||+.++.. + ........++.+++..|.+++|.|+|.||+.++..+...
T Consensus 12 ~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 12 LTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 3577776 33579999999999966 2 334456789999999999999999999999999887654
No 34
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.95 E-value=1.2e-08 Score=42.56 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHH
Q 039346 15 LTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 15 i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
++..|++.+|+.+....++..+..+|+.+|.+++|.+..+||..+++.+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999999999998875
No 35
>PLN02964 phosphatidylserine decarboxylase
Probab=98.95 E-value=6.6e-09 Score=62.11 Aligned_cols=61 Identities=34% Similarity=0.482 Sum_probs=54.2
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
++|..+|.+++|.|+.+||..++..++...+.+++..+|+.+|.+++|.|+++||..++..
T Consensus 183 ~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 183 RILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 4677889999999999999999988887778888999999999999999999999988766
No 36
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.92 E-value=1.6e-08 Score=50.90 Aligned_cols=61 Identities=15% Similarity=0.361 Sum_probs=57.0
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
.+|..||.++.|.|+...++.+|...|-.++.+++..+|+.+-.+..|.+.+..|..++.+
T Consensus 105 ~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 105 NAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 4788999999999999999999999999999999999999999999999999999888764
No 37
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.90 E-value=8.5e-09 Score=51.09 Aligned_cols=57 Identities=25% Similarity=0.506 Sum_probs=50.2
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELV 60 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 60 (71)
.++.||++++|+|..+|++.+|..+|..++++++..++.-.. +.+|.|+++.|...+
T Consensus 93 gLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 93 GLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHI 149 (152)
T ss_pred HHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHH
Confidence 467899999999999999999999999999999998886665 467999999998754
No 38
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.88 E-value=7.9e-09 Score=38.63 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=19.8
Q ss_pred HHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 35 RAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 35 ~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
+++.+|+.+|.+++|.|+++||..++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3566777777777777777777776654
No 39
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.77 E-value=5.9e-08 Score=48.91 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=43.1
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELV 60 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 60 (71)
++|...|.+++|.|+.++|+..+..+|...++++++.|++. ..|.|+|--|+.++
T Consensus 36 EAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmf 90 (171)
T KOG0031|consen 36 EAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMF 90 (171)
T ss_pred HHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHH
Confidence 67899999999999999999999999998877776666643 23456666665555
No 40
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.77 E-value=2.8e-07 Score=43.99 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=50.2
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
.+|...++ .+|.|+.++...++.. .+++...+..+|...|.+.+|.++++||+-.+.-+.
T Consensus 14 ~~F~~l~~-~~g~isg~~a~~~f~~--S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 14 QIFQSLDP-QDGKISGDQAREFFMK--SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHCTSS-STTEEEHHHHHHHHHH--TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCCeEeHHHHHHHHHH--cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 46777774 5799999999998885 567778999999999999999999999999887664
No 41
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.76 E-value=1.4e-08 Score=37.91 Aligned_cols=26 Identities=35% Similarity=0.742 Sum_probs=23.7
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSL 27 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~ 27 (71)
++|+.+|++++|.|+.+||..+++.+
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 58999999999999999999998763
No 42
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.67 E-value=1.3e-07 Score=54.01 Aligned_cols=59 Identities=24% Similarity=0.424 Sum_probs=55.5
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELV 60 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 60 (71)
++|+.+|.+++|.|+.+|+...++.+|..+++++++.+++.++.++.+.|.++|+...+
T Consensus 86 ~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 86 RIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred HHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhh
Confidence 57889999999999999999999999999999999999999999999999999998755
No 43
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.67 E-value=1.3e-07 Score=49.47 Aligned_cols=60 Identities=35% Similarity=0.491 Sum_probs=49.4
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhh----CC-------CCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSL----GS-------TFPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~----~~-------~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
.|+.+|.+++|.|+..|+-.++... +. ..+...+..+|+.+|.+.+|.|+++||...+..
T Consensus 105 ~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 105 AFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred hheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 4889999999999999998887763 32 123556888999999999999999999987754
No 44
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.66 E-value=2.7e-08 Score=37.62 Aligned_cols=27 Identities=37% Similarity=0.684 Sum_probs=20.6
Q ss_pred hHHhhhhccCCCcccHHHHHHHHH-hhC
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFK-SLG 28 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~-~~~ 28 (71)
.+|..+|++++|.|+.+||+.+++ .+|
T Consensus 4 ~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 4 EAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578888888888888888888887 444
No 45
>PLN02964 phosphatidylserine decarboxylase
Probab=98.66 E-value=1.8e-07 Score=56.23 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=51.0
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhC-CCCcHHH---HHHHHHhhcCCCCCeeeHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLG-STFPAWR---AWRALRHADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~-~~~~~~~---~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
+.|..+|++++|.+ +..+++.+| ..+++.+ ++.++..+|.+++|.|+++||+.++..+
T Consensus 147 eaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 147 ESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 57999999999986 888899988 4777766 7999999999999999999999998754
No 46
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.57 E-value=5.6e-07 Score=52.19 Aligned_cols=64 Identities=25% Similarity=0.347 Sum_probs=55.8
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhh----CCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSL----GSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIK 65 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 65 (71)
.+|..+|++++|.|+.+||.....-+ ...+++.++..+.+.+|.+++|.|++.||+..++-+..
T Consensus 551 tiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 551 TIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred HHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcc
Confidence 47899999999999999999988765 45677889999999999999999999999998876543
No 47
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.48 E-value=8.3e-07 Score=50.86 Aligned_cols=51 Identities=31% Similarity=0.468 Sum_probs=44.6
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIK 65 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 65 (71)
.+|..+|.+++|.|+.+|+.. +..+|..+|.+++|.|+++||...+....+
T Consensus 338 ~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 338 EIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred HHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 478899999999999999841 467999999999999999999999887654
No 48
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.48 E-value=1.1e-06 Score=50.45 Aligned_cols=61 Identities=20% Similarity=0.315 Sum_probs=53.6
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCC-CcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGST-FPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
.+|..+|.+++|.++..++.+.+..+..+ ........++..++.+.+|++++.||...+..
T Consensus 18 ~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~ 79 (463)
T KOG0036|consen 18 CLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN 79 (463)
T ss_pred HHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH
Confidence 57899999999999999999999998665 66667788899999999999999999998754
No 49
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.47 E-value=2.4e-06 Score=44.69 Aligned_cols=64 Identities=25% Similarity=0.481 Sum_probs=52.2
Q ss_pred hHHhhhhccCCCc-ccHHHHHHHHHhhCCCCcH-HHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGR-LTKQELQDAFKSLGSTFPA-WRAWRALRHADANGDGCINEDELRELVKYVIK 65 (71)
Q Consensus 2 ~~f~~~d~~~~g~-i~~~el~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 65 (71)
+++..++.+++|. |+.++|...+......-+. ..++.+|+.+|.+++|.|+.+++..++.....
T Consensus 70 rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 70 RIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred HHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc
Confidence 4677788877777 9999998888876554444 48899999999999999999999998877653
No 50
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.45 E-value=7.6e-07 Score=57.60 Aligned_cols=60 Identities=23% Similarity=0.436 Sum_probs=53.9
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCc-------HHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFP-------AWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
+|.+||++.+|.++..+|+.||+.+|..+| +.++..++...|++.+|.|+..+|+.+|..
T Consensus 2258 ~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2258 MFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred HHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 689999999999999999999999998774 347889999999999999999999998753
No 51
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.45 E-value=5.2e-08 Score=47.13 Aligned_cols=55 Identities=31% Similarity=0.355 Sum_probs=40.3
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELREL 59 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~ 59 (71)
.|..+|.+++|.++..|+..+...+ ..+...+...++.+|.++++.|+..|+..+
T Consensus 59 ~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 59 KFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 4788999999999999998766544 445566788999999999999999998764
No 52
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.40 E-value=2.7e-07 Score=33.25 Aligned_cols=22 Identities=36% Similarity=0.730 Sum_probs=13.9
Q ss_pred hHHhhhhccCCCcccHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDA 23 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~ 23 (71)
++|..+|.+++|.|+.+|+..+
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHH
Confidence 3566666666666666666653
No 53
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.35 E-value=2.6e-06 Score=42.95 Aligned_cols=61 Identities=23% Similarity=0.394 Sum_probs=48.6
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhC-CCCcHHHH----HHHHHhhcCCCCCeeeHHHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLG-STFPAWRA----WRALRHADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~-~~~~~~~~----~~~~~~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
+|..+|-++++.|...++...+..+. ..++.+++ ..++...|.+++|++++.+|..++.+.
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 46778888899999999998888764 45666665 456677899999999999999987653
No 54
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.26 E-value=4.6e-06 Score=29.97 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=21.6
Q ss_pred HHHHHHhhcCCCCCeeeHHHHHHHH
Q 039346 36 AWRALRHADANGDGCINEDELRELV 60 (71)
Q Consensus 36 ~~~~~~~~~~~~~~~i~~~ef~~~~ 60 (71)
++..|..+|.+++|.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3568999999999999999998753
No 55
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=1.6e-06 Score=48.20 Aligned_cols=57 Identities=26% Similarity=0.365 Sum_probs=51.0
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRE 58 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~ 58 (71)
+++...|++++|+++..|+..|+.-.+......+++.++...|.+.+|+++.+|.+.
T Consensus 245 ~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 245 QFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 355677999999999999999998877778889999999999999999999999775
No 56
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.24 E-value=5.9e-06 Score=31.04 Aligned_cols=27 Identities=37% Similarity=0.667 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 039346 35 RAWRALRHADANGDGCINEDELRELVK 61 (71)
Q Consensus 35 ~~~~~~~~~~~~~~~~i~~~ef~~~~~ 61 (71)
+++.+|+.+|.+++|.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 367899999999999999999999987
No 57
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.17 E-value=1.1e-06 Score=47.76 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=47.8
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHh-hCCCC--cHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKS-LGSTF--PAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
.+|...|-+.+|+|+..|+++++.. ....+ ...+-...|+..|++++|.|+|+||..-+...+
T Consensus 105 viFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlask 170 (362)
T KOG4251|consen 105 VIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASK 170 (362)
T ss_pred HHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhc
Confidence 5788889999999999999998865 22222 122345578889999999999999987665443
No 58
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.04 E-value=3.1e-05 Score=45.92 Aligned_cols=64 Identities=23% Similarity=0.291 Sum_probs=53.6
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCC---CcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGST---FPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
..|...| +++|+++..++...+.+.+.. ...++++.++...+.+.+|.|+|++|+..+..++..
T Consensus 23 ~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~ 89 (627)
T KOG0046|consen 23 EKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSK 89 (627)
T ss_pred HHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhh
Confidence 4577788 889999999999999886443 347889999999999999999999999987766543
No 59
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=1.2e-05 Score=44.91 Aligned_cols=60 Identities=25% Similarity=0.258 Sum_probs=52.3
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVK 61 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 61 (71)
.++..+|.+++|.|+..|++.|+..........++..-|..++.+.+|.|+|+++.....
T Consensus 81 ~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 81 KLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTY 140 (325)
T ss_pred HHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhh
Confidence 466778888899999999999999877777777888899999999999999999988654
No 60
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.94 E-value=0.00011 Score=43.16 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=51.8
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHh-hCCCCc----------------------------------------------HH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKS-LGSTFP----------------------------------------------AW 34 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~-~~~~~~----------------------------------------------~~ 34 (71)
+.|+.+|+.++|+++...+..++.. ++.+++ ..
T Consensus 468 ~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks 547 (631)
T KOG0377|consen 468 DEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKS 547 (631)
T ss_pred HHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchh
Confidence 4688899999999999999999877 344431 12
Q ss_pred HHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 35 RAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 35 ~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
.+..+|+.+|.+.+|.|+.+||..++.-+..+
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh 579 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSH 579 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhh
Confidence 35668899999999999999999999876543
No 61
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.92 E-value=3.3e-05 Score=39.07 Aligned_cols=66 Identities=23% Similarity=0.388 Sum_probs=55.1
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCc-HHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHhc
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFP-AWRAWRALRHADANGDGCINEDELRELVKYVIKRG 67 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~ 67 (71)
++...|..++.|.++.++|-.+++.++...+ +-.+...|+.+|-++++.|.-+++..++..+++-+
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~e 141 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDE 141 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhcc
Confidence 4567788899999999999999988765444 44677889999999999999999999999887653
No 62
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.72 E-value=7.3e-05 Score=26.47 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=15.3
Q ss_pred HHHHHhhcCCCCCeeeHHHHHHHHH
Q 039346 37 WRALRHADANGDGCINEDELRELVK 61 (71)
Q Consensus 37 ~~~~~~~~~~~~~~i~~~ef~~~~~ 61 (71)
+.++..++.+++|.|++.+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4456666666666666666666554
No 63
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.60 E-value=0.00011 Score=26.00 Aligned_cols=25 Identities=36% Similarity=0.723 Sum_probs=22.1
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKS 26 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~ 26 (71)
.+|..+|.+++|.|+..+|..++..
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 5788999999999999999988864
No 64
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.49 E-value=0.00094 Score=30.42 Aligned_cols=59 Identities=10% Similarity=0.230 Sum_probs=47.0
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCC--CCcHHHHHHHHHhhcCC----CCCeeeHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGS--TFPAWRAWRALRHADAN----GDGCINEDELRELVK 61 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~~~~----~~~~i~~~ef~~~~~ 61 (71)
.+|..+.. +.+.++.++|...|..-.. ..+...+..++..+..+ ..+.++.++|...+.
T Consensus 4 ~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 4 EIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 46777754 6899999999999987543 35788889999888654 479999999998774
No 65
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.00031 Score=43.74 Aligned_cols=61 Identities=21% Similarity=0.313 Sum_probs=51.9
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
.+|..+|+..+|+++...-+.+|-. ..++...+..+|...|.++||+++.+||+-.+.-+.
T Consensus 199 QlFNa~DktrsG~Lsg~qaR~aL~q--S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~lie 259 (1118)
T KOG1029|consen 199 QLFNALDKTRSGYLSGQQARSALGQ--SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIE 259 (1118)
T ss_pred HHhhhcccccccccccHHHHHHHHh--cCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHH
Confidence 4688899999999999998887764 567778889999999999999999999998765544
No 66
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=97.46 E-value=0.0034 Score=32.04 Aligned_cols=59 Identities=8% Similarity=0.111 Sum_probs=45.6
Q ss_pred hccCCCcccHHHHHHHHHhh---CCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 8 DTDGDGRLTKQELQDAFKSL---GSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 8 d~~~~g~i~~~el~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
.+.....++...|.++|+.. ...++...++.+|..+...+...|+|++|...+..+...
T Consensus 12 G~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~ 73 (154)
T PF05517_consen 12 GKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEK 73 (154)
T ss_dssp STSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHH
T ss_pred cCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHH
Confidence 34455789999999999984 445788899999999887777889999999999877654
No 67
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.44 E-value=0.0005 Score=29.81 Aligned_cols=29 Identities=34% Similarity=0.523 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 36 AWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 36 ~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
++.+|+.+|.+++|.|+.+||..++..+.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 57899999999999999999999988764
No 68
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.42 E-value=0.00029 Score=29.46 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=22.0
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKS 26 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~ 26 (71)
.+|..+|.+++|.|+.+||...+..
T Consensus 29 ~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 29 RLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4788999999999999999988763
No 69
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00018 Score=42.01 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=46.9
Q ss_pred CCCcccHHHHHHHHHhh-CCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 11 GDGRLTKQELQDAFKSL-GSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
..+.|+..+++.+...+ |..+++.-++-+|..||.+++|.++.+||+.+++.-.+.
T Consensus 401 Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmhr 457 (489)
T KOG2643|consen 401 AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMHR 457 (489)
T ss_pred cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHhhc
Confidence 35688888888888774 778887777888999999999999999999999776554
No 70
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=97.28 E-value=0.0007 Score=45.08 Aligned_cols=67 Identities=16% Similarity=0.340 Sum_probs=54.6
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHH-HHHHHhcccC
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELV-KYVIKRGYAL 70 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~-~~~~~~~~~~ 70 (71)
-|..+|+++.|.|+..+|++.+.. ...+++.+++.++.-...+.+..+++++|..-+ ...+..+.+|
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rfhepakdigfnv 4129 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPAKDIGFNV 4129 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHhcCchhhcCcch
Confidence 477889999999999999999985 455778899999988899999999999999865 3444445544
No 71
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.00079 Score=40.22 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=49.9
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
-|+.+.++..|.|+..--+.++.+ ..++-.++..+|..+|.+.+|.++..||+..+.-+-
T Consensus 236 QFrtvQpDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 236 QFRTVQPDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred hhhcccCCcccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 366677888899998888888775 456678999999999999999999999999876443
No 72
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.17 E-value=0.0039 Score=32.45 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=48.4
Q ss_pred HhhhhccCCCcccHHHHHHHHHhhCCCC----------------------------------------------------
Q 039346 4 LRRYDTDGDGRLTKQELQDAFKSLGSTF---------------------------------------------------- 31 (71)
Q Consensus 4 f~~~d~~~~g~i~~~el~~~l~~~~~~~---------------------------------------------------- 31 (71)
...+|.++||.|..-|--..++.+|.++
T Consensus 13 vaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~eGr 92 (174)
T PF05042_consen 13 VAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTEGR 92 (174)
T ss_pred hceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccccCCc
Confidence 4567999999999999888888887763
Q ss_pred -cHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 32 -PAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 32 -~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
.....+.+|..++....+.+++.|...++..
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 2255788999998888889999999888865
No 73
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.96 E-value=0.0011 Score=37.70 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=47.1
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhC-CCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLG-STFPAWRAWRALRHADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
.|..+|+++++.|...|++-+=+.+- -.-.....+.+++.+|.+++..|+++|++.++...
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 37788999999999999765444432 22335567889999999999999999999988643
No 74
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.016 Score=28.51 Aligned_cols=57 Identities=26% Similarity=0.291 Sum_probs=41.3
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhh------CC---C-CcHHHHHHHH----HhhcCCCCCeeeHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSL------GS---T-FPAWRAWRAL----RHADANGDGCINEDELREL 59 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~------~~---~-~~~~~~~~~~----~~~~~~~~~~i~~~ef~~~ 59 (71)
.|...|.++++.++.-|+.+.+.-. |. + .++.++..++ +--|.+++|.|+|.||+..
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 5777889999999999998888653 22 1 2345555555 4446689999999999764
No 75
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.82 E-value=0.0064 Score=34.77 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=46.6
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhC-CCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLG-STFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
..|..||..++|.++..+.-..+..++ ...+...++..|++++.+.+|.+.-.+|..+++...
T Consensus 263 ~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l 326 (412)
T KOG4666|consen 263 PTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL 326 (412)
T ss_pred hhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc
Confidence 357788888888888888777776663 444566778888888888888777777777666543
No 76
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.014 Score=34.49 Aligned_cols=62 Identities=10% Similarity=0.228 Sum_probs=42.0
Q ss_pred HhhhhccCCCcccHHHHHHHHHhhCCCCcH---HHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 4 LRRYDTDGDGRLTKQELQDAFKSLGSTFPA---WRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 4 f~~~d~~~~g~i~~~el~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
|.++|+..+|.|+..+|..++-......+. -.++.+-+.+... +..|+++||..++..++..
T Consensus 324 F~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l 388 (489)
T KOG2643|consen 324 FERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNL 388 (489)
T ss_pred HHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhh
Confidence 667788778899998888887764322221 1344455566555 5679999999988776654
No 77
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.57 E-value=0.0053 Score=25.73 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=21.9
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSL 27 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~ 27 (71)
.+|+..|++++|.+..+|+...++.+
T Consensus 25 ~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 25 QLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47889999999999999999988764
No 78
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.50 E-value=0.0048 Score=28.74 Aligned_cols=26 Identities=19% Similarity=0.366 Sum_probs=22.3
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSL 27 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~ 27 (71)
+++..+|.+++|.|+++||..++..+
T Consensus 51 ~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 51 EKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 46778899999999999999888764
No 79
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.43 E-value=0.0047 Score=35.47 Aligned_cols=55 Identities=20% Similarity=0.121 Sum_probs=45.4
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVK 61 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 61 (71)
.|.++|.+.++.++..|+..+-. ...+..++.+|+.+|...+|.|+-.|+..++.
T Consensus 255 MFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 255 MFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 47788999999999999875433 34567788999999999999999999988765
No 80
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.41 E-value=0.012 Score=36.79 Aligned_cols=63 Identities=21% Similarity=0.378 Sum_probs=55.2
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
.+|+..|++.+|.++..+...++..+...+....+...++..+..+++.+..+++......+.
T Consensus 140 ~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~ 202 (746)
T KOG0169|consen 140 SIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT 202 (746)
T ss_pred HHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc
Confidence 368889999999999999999999998888888889999999989999999998888766544
No 81
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.34 E-value=0.016 Score=35.44 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=55.6
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIK 65 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 65 (71)
-|..+|.++.|.++..++.+.++..+..++....+...+..+..-.|.++..+|..++..+++
T Consensus 598 rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 598 RFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 366788888999999999999999888899999999999999888999999999998887654
No 82
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.32 E-value=0.0089 Score=33.05 Aligned_cols=54 Identities=26% Similarity=0.275 Sum_probs=45.5
Q ss_pred hhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHH
Q 039346 6 RYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELREL 59 (71)
Q Consensus 6 ~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~ 59 (71)
.+|.+.+|.++.+|+...+..........++..++..-+.+++..++.++++..
T Consensus 289 lIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 289 LIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 568899999999999988766666666778888888899999999999987753
No 83
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.28 E-value=0.0076 Score=28.17 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=22.0
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSL 27 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~ 27 (71)
+++..+|.+++|.|+++||..++..+
T Consensus 57 ~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 57 KIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 45777899999999999999888765
No 84
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.20 E-value=0.0085 Score=27.88 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=21.6
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSL 27 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~ 27 (71)
+++..+|.+++|.|+++||..++..+
T Consensus 56 ~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 56 RMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35677889999999999999888764
No 85
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.18 E-value=0.007 Score=29.58 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.3
Q ss_pred hHHhhhhccCCCcccHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFK 25 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~ 25 (71)
.+|..+|.+++|.|+.+|+..++.
T Consensus 84 ~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 84 PFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHh
Confidence 468889999999999999999884
No 86
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.06 E-value=0.019 Score=23.64 Aligned_cols=28 Identities=39% Similarity=0.596 Sum_probs=23.7
Q ss_pred HHHHHHhhcCCCCCeeeHHHHHHHHHHH
Q 039346 36 AWRALRHADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 36 ~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
+..+|..++.+++|.|++.+|..++..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 4567889999999999999999888754
No 87
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.04 E-value=0.027 Score=26.30 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=25.2
Q ss_pred HHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 34 WRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 34 ~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
..+..+|..+|.+++|.|+.+++..+++.
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 35677899999999999999999998865
No 88
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.02 E-value=0.031 Score=33.34 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=32.0
Q ss_pred HhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHH----hhcCCCCCeeeHHHHHHHHHHH
Q 039346 4 LRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALR----HADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 4 f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
|-.+|++++|.|+.+++..... ..++..-++.+|. ..-...+|++++++|..++...
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred HhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 4456778888888888774433 2233444555555 2222345666666666655443
No 89
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.87 E-value=0.018 Score=24.65 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=22.6
Q ss_pred HHHHHhhcCCCCCeeeHHHHHHHHHHH
Q 039346 37 WRALRHADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 37 ~~~~~~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
+.+|..+|.+++|.|+.+|+..++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~ 28 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS 28 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc
Confidence 457888999999999999999887653
No 90
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=95.71 E-value=0.02 Score=26.54 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=21.0
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSL 27 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~ 27 (71)
+++..+|.+++|.|++.||..++..+
T Consensus 55 ~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 55 KLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 45677888999999999998777654
No 91
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.52 E-value=0.026 Score=26.51 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.3
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSL 27 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~ 27 (71)
+++..+|.+++|.|+..||..++..+
T Consensus 52 ~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 52 KIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46778899999999999999888764
No 92
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.48 E-value=0.026 Score=26.10 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=21.3
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSL 27 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~ 27 (71)
.+|..+|.+++|.|++++|..++..+
T Consensus 55 ~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 55 KIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 46777888999999999998877753
No 93
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.46 E-value=0.043 Score=25.11 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcC--CCCCeeeHHHHHHHHHH
Q 039346 34 WRAWRALRHADA--NGDGCINEDELRELVKY 62 (71)
Q Consensus 34 ~~~~~~~~~~~~--~~~~~i~~~ef~~~~~~ 62 (71)
..+..+|..++. +++|.|+.+++..++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 356778999999 89999999999998865
No 94
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.46 E-value=0.026 Score=32.44 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=46.8
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVK 61 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 61 (71)
-+|..|+.+-||.+...+|..+|+. ..+...-.+--+|+..+...+++|.+++|..++.
T Consensus 300 ~afk~f~v~eDg~~ge~~ls~ilq~-~lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 300 YAFKRFSVAEDGISGEHILSLILQV-VLGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred HHHHhcccccccccchHHHHHHHHH-hcCcceeeccccchhhhcccCcceeHHHHHHHHH
Confidence 3688899999999999888877776 3334444556688899988999999999998764
No 95
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.44 E-value=0.055 Score=25.09 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=24.3
Q ss_pred HHHHHHHhhc-CCCCC-eeeHHHHHHHHHH
Q 039346 35 RAWRALRHAD-ANGDG-CINEDELRELVKY 62 (71)
Q Consensus 35 ~~~~~~~~~~-~~~~~-~i~~~ef~~~~~~ 62 (71)
.+..+|+.++ .+++| .|+.+++..++..
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 5677899998 78999 6999999999976
No 96
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=95.40 E-value=0.06 Score=24.93 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=25.1
Q ss_pred HHHHHHHHhhc-CCCCC-eeeHHHHHHHHHH
Q 039346 34 WRAWRALRHAD-ANGDG-CINEDELRELVKY 62 (71)
Q Consensus 34 ~~~~~~~~~~~-~~~~~-~i~~~ef~~~~~~ 62 (71)
..+..+|..++ .+++| .|+..++..++..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~ 39 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHH
Confidence 45788999997 99999 5999999999964
No 97
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.25 E-value=0.056 Score=32.32 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=45.5
Q ss_pred cCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 10 DGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 10 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
..+|.++++++...+-.+-..-+..-+...|+.+|.+++|.++..|+..+.....+.
T Consensus 327 ~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~r 383 (493)
T KOG2562|consen 327 KVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQR 383 (493)
T ss_pred eecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHH
Confidence 457899999999988776444455567789999999999999999988887766543
No 98
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.25 E-value=0.072 Score=24.79 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHHHHHHhhcC-CC-CCeeeHHHHHHHHHH
Q 039346 34 WRAWRALRHADA-NG-DGCINEDELRELVKY 62 (71)
Q Consensus 34 ~~~~~~~~~~~~-~~-~~~i~~~ef~~~~~~ 62 (71)
..+..+|..++. ++ +|.|+.+|+..++..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHH
Confidence 456788999987 86 699999999998865
No 99
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.09 E-value=0.063 Score=32.63 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=23.6
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSL 27 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~ 27 (71)
.+|+.||+.++|.++.+++.+++..+
T Consensus 112 ~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 112 VAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHHHHhcccCCCceehHHHHHHHhcc
Confidence 57899999999999999999999875
No 100
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.00 E-value=0.12 Score=33.27 Aligned_cols=61 Identities=18% Similarity=0.149 Sum_probs=47.4
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHH-----HHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAW-----RAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
+.|..+++...|.++.+++..++..+|...-.+ ++..+.+..+...-|.+++.+|...+.+
T Consensus 751 Ale~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 751 ALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 568888988899999999999999998877642 3334445556666788999999987764
No 101
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=94.65 E-value=0.088 Score=28.41 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=25.5
Q ss_pred HHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 36 AWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 36 ~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
...+|+.+|.+.+|.|++.|+..+|.++.
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg 129 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLG 129 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhC
Confidence 45689999999999999999999998654
No 102
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.51 E-value=0.062 Score=33.31 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=32.2
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINED 54 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 54 (71)
++|+.+|.+.+|.++..++...|..+..+-..+.+..+|+.++.+++ ....+
T Consensus 559 rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e 610 (671)
T KOG4347|consen 559 RLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDRE 610 (671)
T ss_pred HHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccc
Confidence 45666777777777777776666666555555555666666666555 44443
No 103
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=94.39 E-value=0.2 Score=30.66 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=40.5
Q ss_pred hhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHH
Q 039346 7 YDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 7 ~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
.|..+||.|++.||+..=..++. ++......|..+|..+.|.++++++...+...
T Consensus 83 aD~tKDglisf~eF~afe~~lC~--pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFRAFESVLCA--PDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred hhhcccccccHHHHHHHHhhccC--chHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 35567899999999854333333 24555678899999999999999998887654
No 104
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=94.37 E-value=0.056 Score=31.71 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.5
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKS 26 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~ 26 (71)
.+|..+|.+++|.|+.+||...+..
T Consensus 361 ~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 361 AVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4788999999999999999998875
No 105
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.36 E-value=0.13 Score=29.54 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=42.9
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHh----hC-CCCcHHH-----------HHHHHHhhcCCCCCeeeHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKS----LG-STFPAWR-----------AWRALRHADANGDGCINEDELRELVK 61 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~----~~-~~~~~~~-----------~~~~~~~~~~~~~~~i~~~ef~~~~~ 61 (71)
.+|...|.+++|.++..|+..++.. +. ..-.+.. -..+++..|.+++..|+.+||+....
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 3677889999999999998877654 21 1111111 13467888999999999999987653
No 106
>PLN02952 phosphoinositide phospholipase C
Probab=93.28 E-value=0.59 Score=29.16 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=42.4
Q ss_pred CCCcccHHHHHHHHHhhC--CCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHH
Q 039346 11 GDGRLTKQELQDAFKSLG--STFPAWRAWRALRHADANGDGCINEDELRELVKYVIK 65 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 65 (71)
+.|.++++++..+.+.+- ...+..++..+|..+..++ +.++.++|..++...++
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCC
Confidence 468999999988887753 2336789999999997644 68999999999877553
No 107
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.54 E-value=0.036 Score=35.40 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=51.8
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
+|...|.+.+|.|+..+....+.. .+++...+...|...+....+.+++++|...+..+..+
T Consensus 288 if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~ 349 (847)
T KOG0998|consen 288 IFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQK 349 (847)
T ss_pred HHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhhhhh
Confidence 577889999999999999887775 66777888999999999999999999888776655443
No 108
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=92.39 E-value=0.27 Score=30.47 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=39.5
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCC-cHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTF-PAWRAWRALRHADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
..|..+|.++||.++..|++.+....+... .... --..-.....|.+++..|+..|.-.
T Consensus 319 ~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~---~~~~t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 319 DVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSP---YKDSTVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred HHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCc---ccccceecccceeehhhHHHHHHHH
Confidence 578899999999999999999998753322 1100 0001112267889999888877643
No 109
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.34 E-value=0.82 Score=29.66 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=43.7
Q ss_pred cCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 10 DGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 10 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
-+.|+|+...-+.++-. .+++..-+..+|...|.+.||+++..||.-.|+-++
T Consensus 27 p~~gfitg~qArnfflq--S~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~ 79 (1118)
T KOG1029|consen 27 PGQGFITGDQARNFFLQ--SGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIK 79 (1118)
T ss_pred CCCCccchHhhhhhHHh--cCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHH
Confidence 35689999999988765 445567778899999999999999999998887655
No 110
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=91.64 E-value=0.34 Score=23.83 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=23.0
Q ss_pred CCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 039346 30 TFPAWRAWRALRHADANGDGCINEDELRELVK 61 (71)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 61 (71)
.++++.++.+|..+-.+..|+|.|-+|+.-+.
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 36788899999999999999999999998664
No 111
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=90.79 E-value=0.49 Score=17.84 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=15.5
Q ss_pred CCeeeHHHHHHHHHHHHHhc
Q 039346 48 DGCINEDELRELVKYVIKRG 67 (71)
Q Consensus 48 ~~~i~~~ef~~~~~~~~~~~ 67 (71)
.+.|++++++.+..++..+.
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~ 21 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFY 21 (33)
T ss_pred CceecHHHHHHHHHHHHHHH
Confidence 57788888888888877663
No 112
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=90.68 E-value=0.44 Score=22.90 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=19.4
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKS 26 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~ 26 (71)
++....|.+++|.++.+||.-++.-
T Consensus 47 ~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 47 QIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4567789999999999999876653
No 113
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=90.65 E-value=0.51 Score=21.10 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=30.9
Q ss_pred HHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHH
Q 039346 20 LQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIK 65 (71)
Q Consensus 20 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 65 (71)
|..++..+...++......+...++.-..+.|+.++|...++.+-.
T Consensus 11 F~~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3344444444555566666666666666788999999998887653
No 114
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=89.77 E-value=0.98 Score=19.55 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=38.2
Q ss_pred CCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHhcc
Q 039346 12 DGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKRGY 68 (71)
Q Consensus 12 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~ 68 (71)
+..++.+|+...+..+...++..++-.+|...-. +....|..+...+..+..
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~~-----~er~k~~~M~~~L~~y~~ 58 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQVHG-----IERDKFVDMQENLKEYIQ 58 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHH
Confidence 3568899999999999999998888888866643 333456677766665543
No 115
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=89.42 E-value=1.5 Score=21.08 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=34.2
Q ss_pred CCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcC---CCCCeeeHHHHHHHHHHHHHh
Q 039346 11 GDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADA---NGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~ef~~~~~~~~~~ 66 (71)
.+|.++.+.|..++-. .-+.+-..++|..+.. -..+.|+.+|+..++..+...
T Consensus 41 ~dG~L~rs~Fg~CIGM---~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD~ 96 (100)
T PF08414_consen 41 KDGLLPRSDFGECIGM---KDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISDQ 96 (100)
T ss_dssp BTTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH--
T ss_pred cCCcccHHHHHHhcCC---cccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhcc
Confidence 3899999999987753 2345555666655532 236889999999999887643
No 116
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=87.97 E-value=1.6 Score=20.56 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=32.5
Q ss_pred HHhhhhccCCCcccHHHHHHHHHh-------hCCC----CcHHHHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKS-------LGST----FPAWRAWRALRHADANGDGCINEDELRELVK 61 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~-------~~~~----~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 61 (71)
+|..+ .+++|.++...+...|.. +|+. ..+..++.+|.... ....|+.++|+..+.
T Consensus 8 lFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 8 LFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHH
T ss_pred HHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHH
Confidence 56666 477899999988877765 2332 24555666776652 456799999998764
No 117
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.64 E-value=0.46 Score=28.04 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=36.6
Q ss_pred ChHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHH-HHHHHHhhcCCCCCeeeHHHH
Q 039346 1 MAWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWR-AWRALRHADANGDGCINEDEL 56 (71)
Q Consensus 1 ~~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~ef 56 (71)
++.|+.+|+.+.|+|+.+-++.++..+....++.+ +..+=+..++..-+.|-.++|
T Consensus 312 rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 312 RRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred HhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccc
Confidence 46788999999999999999999988775555443 222224445444444443333
No 118
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=87.25 E-value=2 Score=20.11 Aligned_cols=52 Identities=23% Similarity=0.174 Sum_probs=34.2
Q ss_pred CCCcccHHHHHHHHHhhC--CCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 11 GDGRLTKQELQDAFKSLG--STFPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
.||.++..|...+-..+. ..++..+...++..+........++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 478999888776555432 3456667777777776655566677777665543
No 119
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=87.11 E-value=4.3 Score=25.12 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=42.7
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhh---c-----CCCCCeeeHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHA---D-----ANGDGCINEDELRELVK 61 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~---~-----~~~~~~i~~~ef~~~~~ 61 (71)
+|..+-....+.++..-|..+|+.+|...++..++.++..+ + ......++.+.|..++.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 35555434468999999999999999998888888777544 2 23456678888877653
No 120
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.43 E-value=2 Score=25.87 Aligned_cols=46 Identities=20% Similarity=0.365 Sum_probs=37.4
Q ss_pred CCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHH
Q 039346 12 DGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELREL 59 (71)
Q Consensus 12 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~ 59 (71)
+|+++...-+..+- ...++..-+-.+|+..|.+.+|.++-+||.-.
T Consensus 457 ~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 457 NGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred CceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 68888888777665 45666777788999999999999999998654
No 121
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=86.43 E-value=1.4 Score=22.42 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=27.4
Q ss_pred CCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcC-------CCCCeeeHHHHHHHHHH
Q 039346 12 DGRLTKQELQDAFKSLGSTFPAWRAWRALRHADA-------NGDGCINEDELRELVKY 62 (71)
Q Consensus 12 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~ef~~~~~~ 62 (71)
-+.++.+||.++=... .++...+..++..|.. +.++.|+++.|..+|..
T Consensus 5 ~~~lsp~eF~qLq~y~--eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~ 60 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYS--EYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT 60 (138)
T ss_dssp -S-S-HHHHHHHHHHH--HH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHH
T ss_pred eeccCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHH
Confidence 3678888887655432 1234566667777733 34678999999998864
No 122
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.37 E-value=2 Score=19.25 Aligned_cols=33 Identities=6% Similarity=0.116 Sum_probs=26.3
Q ss_pred CCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhc
Q 039346 12 DGRLTKQELQDAFKSLGSTFPAWRAWRALRHAD 44 (71)
Q Consensus 12 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 44 (71)
+=.|+.+-++..+...|..+|+..++++++...
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 346788888888888899999988888887654
No 123
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=85.49 E-value=11 Score=27.13 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=43.6
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHh--hCCCCcHHHHHHHHHhhcCCCCCeeeHHH---------HHHHHHHHHHhcc
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKS--LGSTFPAWRAWRALRHADANGDGCINEDE---------LRELVKYVIKRGY 68 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~e---------f~~~~~~~~~~~~ 68 (71)
++...+||+.+|+|+..+....|-. .-.-.++.++...|+.++. +...|..++ -..++.+++++-.
T Consensus 2300 ~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~ltreqaefc~s~m~~~~e 2376 (2399)
T KOG0040|consen 2300 EILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNLTREQAEFCMSKMKPYAE 2376 (2399)
T ss_pred HHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhcCCHHHHHHHHHHhhhhcc
Confidence 3456789999999999988776644 2334556688889988887 444444443 3445566665543
No 124
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=84.62 E-value=2.4 Score=18.57 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=32.2
Q ss_pred cCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCC
Q 039346 10 DGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANG 47 (71)
Q Consensus 10 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~ 47 (71)
..++.+...++...+..-+...+...++..++.++.++
T Consensus 9 ~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 34678999999999988889899999999999988764
No 125
>PRK00523 hypothetical protein; Provisional
Probab=84.41 E-value=2.7 Score=18.97 Aligned_cols=32 Identities=9% Similarity=0.220 Sum_probs=25.6
Q ss_pred CCcccHHHHHHHHHhhCCCCcHHHHHHHHHhh
Q 039346 12 DGRLTKQELQDAFKSLGSTFPAWRAWRALRHA 43 (71)
Q Consensus 12 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 43 (71)
+=.|+.+-++..+...|..+|+..++.+.+.+
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34677788888888889999888888887765
No 126
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=84.25 E-value=2.6 Score=18.60 Aligned_cols=33 Identities=6% Similarity=0.153 Sum_probs=26.2
Q ss_pred CCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhc
Q 039346 12 DGRLTKQELQDAFKSLGSTFPAWRAWRALRHAD 44 (71)
Q Consensus 12 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 44 (71)
+-.|+.+-++..+...|..+++..++.+.+.+.
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 346788888888888899999888888876654
No 127
>PRK01844 hypothetical protein; Provisional
Probab=82.55 E-value=3.4 Score=18.67 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=25.7
Q ss_pred CcccHHHHHHHHHhhCCCCcHHHHHHHHHhhc
Q 039346 13 GRLTKQELQDAFKSLGSTFPAWRAWRALRHAD 44 (71)
Q Consensus 13 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 44 (71)
=.|+.+-++..+...|..+|+..++.+.+...
T Consensus 37 Ppine~mir~Mm~QMGqkPSekki~Q~m~~mk 68 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQKPSQKKINQMMSAMN 68 (72)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 36777888888888899999888888887663
No 128
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=82.04 E-value=11 Score=25.34 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=44.0
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCC----------CCcHHHHHHHHHhhcCC----CCCeeeHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGS----------TFPAWRAWRALRHADAN----GDGCINEDELRELV 60 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~----------~~~~~~~~~~~~~~~~~----~~~~i~~~ef~~~~ 60 (71)
++|..+..+..-+++.++|..+|+.-.. ......++.++..+..+ ..|.++.+.|+..+
T Consensus 225 ~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 225 EIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYL 297 (1189)
T ss_pred HHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHh
Confidence 4677776666689999999999987433 23456788888888765 46888888887654
No 129
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=81.55 E-value=6.1 Score=20.98 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=36.5
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCC-------CcHHHHHHHHHhhcCCCCCeeeHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGST-------FPAWRAWRALRHADANGDGCINEDELRELV 60 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 60 (71)
++|..+++.+.+.++..|+..+++.--.. .+.-|...++... .+.+|.+..|....+.
T Consensus 100 ~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 100 EIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 46777777777889999988888761111 1122334444433 4567889888776654
No 130
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=79.26 E-value=4.5 Score=17.99 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHH
Q 039346 15 LTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 15 i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
++.+++..++...+...+..++..+++.-+..+....+=..+..++..+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 4456788888888888888888888877666555555555555555443
No 131
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=78.89 E-value=1.1 Score=24.30 Aligned_cols=54 Identities=22% Similarity=0.177 Sum_probs=36.6
Q ss_pred hhhc-cCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 039346 6 RYDT-DGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVK 61 (71)
Q Consensus 6 ~~d~-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 61 (71)
.+|. -.+|+++.-|+.-+ +. ...+.+..+...|..+|.+.++.|+.+|+-.++.
T Consensus 195 qld~~p~d~~~sh~el~pl-~a-p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 195 QLDQHPIDGYLSHTELAPL-RA-PLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred cccCCCccccccccccccc-cC-CcccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 3443 34788888777522 11 1223355567789999999999999999887653
No 132
>PLN02222 phosphoinositide phospholipase C 2
Probab=78.88 E-value=14 Score=23.46 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=39.8
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCC--CcHHHHHHHHHhhcC-CCCCeeeHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGST--FPAWRAWRALRHADA-NGDGCINEDELRELVK 61 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~i~~~ef~~~~~ 61 (71)
+|..+.. ++.++.++|..+|...+.. .+.+.+..++..+.. ...+.++++.|..++.
T Consensus 30 if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 30 IFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred HHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 4555542 4799999999999886542 356667777776532 2456799999988774
No 133
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.20 E-value=2.2 Score=27.88 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=50.2
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
..|..+|..+.|.|+.++....+.. ..+...-+-.+|...+..+.|.++..+|-..++.+...
T Consensus 15 ~~~~~~d~~~~G~i~g~~a~~f~~~--s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~a 77 (847)
T KOG0998|consen 15 QYFKSADPQGDGRITGAEAVAFLSK--SGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQA 77 (847)
T ss_pred HhhhccCcccCCcccHHHhhhhhhc--cccchhhhhccccccccccCCccccccccccchHhhhh
Confidence 4678889999999999999887774 55556666778888888888999998888877766543
No 134
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=75.65 E-value=3 Score=14.12 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=7.3
Q ss_pred ccCCCcccHHHHH
Q 039346 9 TDGDGRLTKQELQ 21 (71)
Q Consensus 9 ~~~~g~i~~~el~ 21 (71)
-+++|.|+.-++.
T Consensus 2 vN~DG~vna~D~~ 14 (21)
T PF00404_consen 2 VNGDGKVNAIDLA 14 (21)
T ss_dssp TTSSSSSSHHHHH
T ss_pred CCCCCcCCHHHHH
Confidence 3556666655554
No 135
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=75.44 E-value=3.6 Score=18.38 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=29.4
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcC-------CCCCeeeHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADA-------NGDGCINEDELRE 58 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~ef~~ 58 (71)
.+|+.+ .++.++|+.++|+..+.. +.+..+..++.. ...+.+++..|..
T Consensus 10 ~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 10 EAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 467777 567799999999966442 222444444422 2236678877764
No 136
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=75.34 E-value=14 Score=23.81 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=36.1
Q ss_pred cccHHHHHHHHHhhCCCC-cHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 14 RLTKQELQDAFKSLGSTF-PAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 14 ~i~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
+++.+.+..++..+.... +..-+..+|...|.+.+|.+++.++...+..+.
T Consensus 534 yi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~ 585 (671)
T KOG4347|consen 534 YIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK 585 (671)
T ss_pred HHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH
Confidence 355566666666543222 233467799999999999999999999887655
No 137
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=75.16 E-value=7.2 Score=18.24 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=39.9
Q ss_pred CcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 13 GRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 13 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
..++..||.+..+..+..++...+..+.+.+....-+-.+-++=..++..+.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia 64 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIA 64 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999988888888776666666555555555544
No 138
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=74.62 E-value=7.5 Score=18.18 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=37.7
Q ss_pred CCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 12 DGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 12 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
.-.|+..+|...+...-...+..+...+=..+|...++.||.=||-...+-.+-|
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFqPw 74 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQPW 74 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT--G
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHHhhH
Confidence 3578999999999986544444555666677888999999988887776654433
No 139
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=74.08 E-value=8.9 Score=18.82 Aligned_cols=42 Identities=12% Similarity=0.103 Sum_probs=34.5
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhc
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHAD 44 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 44 (71)
.|..++.-++...+..+++.++..+|.....+.++.++..+.
T Consensus 6 AYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 6 AYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 345556667778889999999999999999998888887775
No 140
>PLN02230 phosphoinositide phospholipase C 4
Probab=73.61 E-value=21 Score=22.84 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=38.9
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCC---CcHHHHHHHHHhhcC-------CCCCeeeHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGST---FPAWRAWRALRHADA-------NGDGCINEDELRELVK 61 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~---~~~~~~~~~~~~~~~-------~~~~~i~~~ef~~~~~ 61 (71)
.+|..+..+ .+.++.++|...|...+.. .+...+..++..+.. -..+.++.+.|..++.
T Consensus 33 ~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 33 DLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred HHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 456666433 3799999999999987632 345556666654422 1235689999888664
No 141
>PLN02228 Phosphoinositide phospholipase C
Probab=72.89 E-value=21 Score=22.64 Aligned_cols=57 Identities=9% Similarity=0.126 Sum_probs=39.4
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCC--CcHHHHHHHHHhhcCC----CCCeeeHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGST--FPAWRAWRALRHADAN----GDGCINEDELRELVK 61 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~--~~~~~~~~~~~~~~~~----~~~~i~~~ef~~~~~ 61 (71)
+|..+. +++.++.++|..+|...+.. .+...+..++..+... ..+.++.+.|..++.
T Consensus 29 if~~~s--~~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 29 LFEAYS--RNGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred HHHHhc--CCCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 444443 23689999999999886432 3455677888877643 346799999988774
No 142
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=72.02 E-value=8.3 Score=17.55 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=20.6
Q ss_pred CCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCC
Q 039346 11 GDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADAN 46 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 46 (71)
..|++++.++...|.. ..++...+..++..+...
T Consensus 18 ~~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 18 KKGYLTYDEINDALPE--DDLDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHSS-BHHHHHHH-S---S---HHHHHHHHHHHHTT
T ss_pred hcCcCCHHHHHHHcCc--cCCCHHHHHHHHHHHHHC
Confidence 3689999999887763 345667777777776543
No 143
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.03 E-value=17 Score=20.68 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=37.1
Q ss_pred hhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 7 YDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 7 ~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
.|++.+..|..+-+.+++..+|..+.+-.+-.+-=.+....-+..+.++|+.-+..
T Consensus 74 ~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~ 129 (260)
T KOG3077|consen 74 KDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTA 129 (260)
T ss_pred cCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 36665678888889999999988775443332222334556677788888775543
No 144
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=70.75 E-value=7.1 Score=20.41 Aligned_cols=52 Identities=8% Similarity=0.121 Sum_probs=32.1
Q ss_pred cccHHHHHHHHHhh----CCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHH
Q 039346 14 RLTKQELQDAFKSL----GSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIK 65 (71)
Q Consensus 14 ~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 65 (71)
.++-..+..||..- |...+.-.+...|..+....-+.++|++|...+..+.+
T Consensus 33 em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~ 88 (180)
T KOG4070|consen 33 EMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELAT 88 (180)
T ss_pred ccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHH
Confidence 55666677777663 23333344455666666666667888888776666553
No 145
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=70.27 E-value=2.7 Score=19.30 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=31.8
Q ss_pred cCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHH
Q 039346 10 DGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINED 54 (71)
Q Consensus 10 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 54 (71)
+.+|.-+..+|-+++..+|....+..+..+++.+... .|.+.++
T Consensus 36 ~dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSMtR~-tgF~E~~ 79 (88)
T PF15144_consen 36 DDSGKNPEPDFPKFLNLLGTEIIENAVEFILRSMTRS-TGFMEFE 79 (88)
T ss_pred cccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhhcc-cCceecC
Confidence 3456777778999999999888788888888777653 4555443
No 146
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=65.74 E-value=15 Score=18.00 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=32.0
Q ss_pred hhhccCCCcccHHHHHHHHHh----------hCCCCcHHHHHHHHHhhcCCCCCeeeHHHH
Q 039346 6 RYDTDGDGRLTKQELQDAFKS----------LGSTFPAWRAWRALRHADANGDGCINEDEL 56 (71)
Q Consensus 6 ~~d~~~~g~i~~~el~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef 56 (71)
.+|+..+.+|+-++++.++.. .|..++..-+-.++-.-..++...++.+=+
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L 71 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFL 71 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 567788889999999988876 133444454555555554555555554433
No 147
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=64.91 E-value=23 Score=20.02 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=30.2
Q ss_pred cCCCcccHHHHHHHHHhhC--CCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 10 DGDGRLTKQELQDAFKSLG--STFPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 10 ~~~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
..||.++..|+. ..+.+. ..++...-+.+...+........++.++...+..
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRS 120 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 348999999987 444432 3444554334445554444444677777776654
No 148
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=63.76 E-value=21 Score=19.08 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=21.6
Q ss_pred ccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhc
Q 039346 9 TDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHAD 44 (71)
Q Consensus 9 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 44 (71)
.+.+|+++.+++-..+..-+...+.+++..+....+
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 467899999999888877666677777777775543
No 149
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=63.43 E-value=14 Score=16.82 Aligned_cols=44 Identities=30% Similarity=0.308 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCC-CCCeeeHHHHHHHH
Q 039346 15 LTKQELQDAFKSLGSTFPAWRAWRALRHADAN-GDGCINEDELRELV 60 (71)
Q Consensus 15 i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~ef~~~~ 60 (71)
-+.+++...|. |..++.+.+...+...+.. --+.++.+++..++
T Consensus 42 ~~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 42 EDIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CCHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred hHHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 34566666664 8888899999999888543 44678888887653
No 150
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=60.89 E-value=27 Score=19.40 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=31.2
Q ss_pred cHHHHHHHHHh----hCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 16 TKQELQDAFKS----LGSTFPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 16 ~~~el~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
+.++++.++.. ++..+++..++.+...+..-++-.+++.+|...+..
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~~ 223 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLNN 223 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666654 466777777777777766655556777777766554
No 151
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=60.10 E-value=21 Score=17.85 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=35.2
Q ss_pred HHhhhhcc--CCCcccHHHHHHHHHhhC-------CCCc-----------HHHHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 039346 3 WLRRYDTD--GDGRLTKQELQDAFKSLG-------STFP-----------AWRAWRALRHADANGDGCINEDELRELVK 61 (71)
Q Consensus 3 ~f~~~d~~--~~g~i~~~el~~~l~~~~-------~~~~-----------~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 61 (71)
+|+..... .+..++..++..++..+- .... +--+..+++.+|.++.|.|+.-+|...+.
T Consensus 46 ~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 46 AFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 45544432 246799999888887642 1111 11346678999999999999888876654
No 152
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=59.40 E-value=49 Score=21.91 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=39.0
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
+|...+...++.+...++..+...++..+ ++..++..+..+ .+.++.++++.++...
T Consensus 177 ~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 177 LFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred HHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 45555556778888888888777665544 556677666655 6777777777776655
No 153
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=58.88 E-value=5.9 Score=19.51 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=10.2
Q ss_pred CCCcccHHHHHHHHHhh
Q 039346 11 GDGRLTKQELQDAFKSL 27 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~ 27 (71)
-||.++.+|...+...+
T Consensus 36 aDG~v~~~E~~~i~~~~ 52 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLL 52 (140)
T ss_dssp TTSS--CHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 47888888877665554
No 154
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=58.22 E-value=12 Score=16.56 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=18.3
Q ss_pred hhhccCCCcccHHHHHHHHHh
Q 039346 6 RYDTDGDGRLTKQELQDAFKS 26 (71)
Q Consensus 6 ~~d~~~~g~i~~~el~~~l~~ 26 (71)
.+|...+.+|+-+++.++++.
T Consensus 11 LYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred cccCCCceeEeHHHHHHHHHC
Confidence 578888899999999998886
No 155
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=57.58 E-value=18 Score=23.48 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=32.8
Q ss_pred cCCCcccHHH-HHHHHHhhCCCCcHHHHHHHHHhhcCCCCC
Q 039346 10 DGDGRLTKQE-LQDAFKSLGSTFPAWRAWRALRHADANGDG 49 (71)
Q Consensus 10 ~~~g~i~~~e-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (71)
|=||.|+..+ |.+++-.+|..++...+..+|.....++-.
T Consensus 536 DIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk 576 (738)
T KOG2116|consen 536 DIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGYK 576 (738)
T ss_pred cCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCee
Confidence 3479999877 688888899999999999999888877543
No 156
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=56.53 E-value=20 Score=16.59 Aligned_cols=51 Identities=10% Similarity=-0.077 Sum_probs=34.1
Q ss_pred CCcccHHHHHHHHHhh-CCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 12 DGRLTKQELQDAFKSL-GSTFPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 12 ~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
.|.-+..--..||+.. |-..+..-.+.+-+.++......|+++|++.....
T Consensus 26 ~~~HPl~~Q~~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~ 77 (82)
T PF11020_consen 26 PDHHPLQFQATWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALG 77 (82)
T ss_pred CCCCchHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3555555556688764 55566665566667777777788999999886544
No 157
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=56.04 E-value=17 Score=15.67 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=5.5
Q ss_pred CcccHHHHHHHHHh
Q 039346 13 GRLTKQELQDAFKS 26 (71)
Q Consensus 13 g~i~~~el~~~l~~ 26 (71)
..++.+|...++..
T Consensus 13 ~~Ls~~e~~~~~~~ 26 (66)
T PF02885_consen 13 EDLSREEAKAAFDA 26 (66)
T ss_dssp ----HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 34555555555554
No 158
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=55.64 E-value=31 Score=18.43 Aligned_cols=34 Identities=12% Similarity=0.006 Sum_probs=25.0
Q ss_pred ccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHh
Q 039346 9 TDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRH 42 (71)
Q Consensus 9 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 42 (71)
.+.+|+++.+++...++.-+...+.+.+..+...
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 4678999999999888754556777776666543
No 159
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=55.55 E-value=23 Score=16.96 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCC
Q 039346 15 LTKQELQDAFKSLGSTFPAWRAWRALRHADANGD 48 (71)
Q Consensus 15 i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 48 (71)
++..+..-++.-+...++++++..+...+...+.
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~ 53 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGD 53 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTS
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCC
Confidence 5556666666667777888887777766644333
No 160
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=54.61 E-value=19 Score=16.16 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=12.6
Q ss_pred CCCcccHHHHHHHHHh
Q 039346 11 GDGRLTKQELQDAFKS 26 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~ 26 (71)
..|++..+||..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 4688888898888765
No 161
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=54.49 E-value=9.6 Score=19.87 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=20.4
Q ss_pred CCcccHHH-HHHHHHhhCCCCcHHHHHHHHHhhcCC
Q 039346 12 DGRLTKQE-LQDAFKSLGSTFPAWRAWRALRHADAN 46 (71)
Q Consensus 12 ~g~i~~~e-l~~~l~~~~~~~~~~~~~~~~~~~~~~ 46 (71)
||+|+..+ +..++..+|.......+..+++.+..+
T Consensus 7 DGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~ 42 (157)
T PF08235_consen 7 DGTITKSDVLGHILPILGKDWTHPGAAELYRKIADN 42 (157)
T ss_pred cCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHC
Confidence 57777766 444555566665555555565555544
No 162
>PRK09389 (R)-citramalate synthase; Provisional
Probab=54.43 E-value=51 Score=20.52 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHhhcC--CCCCeeeHHHHHHHHHHHH
Q 039346 17 KQELQDAFKSLGSTFPAWRAWRALRHADA--NGDGCINEDELRELVKYVI 64 (71)
Q Consensus 17 ~~el~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~ef~~~~~~~~ 64 (71)
..-+...++.+|..++..++..++..+.. +....++-+|+..++....
T Consensus 320 ~~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~~ 369 (488)
T PRK09389 320 RAALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDVL 369 (488)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Confidence 34466777888998888888888766644 3445699999888886654
No 163
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=53.29 E-value=20 Score=15.52 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=17.8
Q ss_pred cccHHHHHHHHHhhCCCCcHHHHHH
Q 039346 14 RLTKQELQDAFKSLGSTFPAWRAWR 38 (71)
Q Consensus 14 ~i~~~el~~~l~~~~~~~~~~~~~~ 38 (71)
.|+.++|..+|+......+..++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 5788888888888777777666543
No 164
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=52.90 E-value=7.1 Score=15.52 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=14.0
Q ss_pred hccCCCcccHHHHHHHHHh
Q 039346 8 DTDGDGRLTKQELQDAFKS 26 (71)
Q Consensus 8 d~~~~g~i~~~el~~~l~~ 26 (71)
+....|-++.++++.+++.
T Consensus 7 ~g~~~GP~s~~el~~l~~~ 25 (45)
T PF14237_consen 7 NGQQQGPFSLEELRQLISS 25 (45)
T ss_pred CCeEECCcCHHHHHHHHHc
Confidence 4445688888888888775
No 165
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=52.37 E-value=8.4 Score=17.80 Aligned_cols=23 Identities=4% Similarity=0.008 Sum_probs=11.4
Q ss_pred hcCCCCCeeeHHHHHHHHHHHHH
Q 039346 43 ADANGDGCINEDELRELVKYVIK 65 (71)
Q Consensus 43 ~~~~~~~~i~~~ef~~~~~~~~~ 65 (71)
+..+.....+|++|..++..+-+
T Consensus 14 Fsl~r~~~~~f~ef~~ll~~lH~ 36 (80)
T cd06403 14 FSLDRNKPGKFEDFYKLLEHLHH 36 (80)
T ss_pred EEeccccCcCHHHHHHHHHHHhC
Confidence 33334444555555555555443
No 166
>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]
Probab=50.94 E-value=45 Score=21.49 Aligned_cols=58 Identities=12% Similarity=0.264 Sum_probs=36.0
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCe--eeHHHHHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGC--INEDELRELVKYVIK 65 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~ef~~~~~~~~~ 65 (71)
+|+..|.++.-.++...+-++|.++-.+. ++-+.....++... |+|.|+..++.....
T Consensus 591 lFHqvtedg~p~lDlaHvl~CLNKLDAG~-----~EkI~LvSrDE~t~IIvSY~ELK~~le~t~~ 650 (655)
T KOG3741|consen 591 LFHQVTEDGKPWLDLAHVLQCLNKLDAGI-----QEKILLVSRDELTCIIVSYKELKTILEKTFR 650 (655)
T ss_pred hheEeccCCChhhhHHHHHHHhhhccccc-----hhheeEeccCCCcEEEEEHHHHHHHHHHhhc
Confidence 35555666666777777777777654333 23344454455444 589999987776554
No 167
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=50.94 E-value=31 Score=17.03 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=29.3
Q ss_pred hhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhc
Q 039346 7 YDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHAD 44 (71)
Q Consensus 7 ~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 44 (71)
...-++..++.+++..+|...|.......+..+++.+.
T Consensus 12 ~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 12 CVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 33455667999999999999998887777777776664
No 168
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=49.52 E-value=16 Score=17.00 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=12.5
Q ss_pred CCCcccHHHHHHHHHhh
Q 039346 11 GDGRLTKQELQDAFKSL 27 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~ 27 (71)
.||.++.+|...+...+
T Consensus 15 aDG~v~~~E~~~i~~~l 31 (111)
T cd07176 15 ADGDIDDAELQAIEALL 31 (111)
T ss_pred hccCCCHHHHHHHHHHH
Confidence 47888888877766665
No 169
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=48.36 E-value=43 Score=17.93 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHhhCCCCc-HHHHHHHHHhh----cCCCCCeeeHHHHHHHHHHHHHhcccCC
Q 039346 14 RLTKQELQDAFKSLGSTFP-AWRAWRALRHA----DANGDGCINEDELRELVKYVIKRGYALA 71 (71)
Q Consensus 14 ~i~~~el~~~l~~~~~~~~-~~~~~~~~~~~----~~~~~~~i~~~ef~~~~~~~~~~~~~~~ 71 (71)
.+..=++.+.++.+|.... +.++..++... .....+.-+...-.-.++-+.+.|++|+
T Consensus 46 ~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS 108 (183)
T PF01397_consen 46 PLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDEDNEEIDDLYTTALRFRLLRQHGYYVS 108 (183)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTTTSHTSSCHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccccccccCchhHHHHHHHHHHHcCCccc
Confidence 4445567777888887665 55666555333 3222222255555555566667777763
No 170
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=48.28 E-value=49 Score=22.17 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=36.2
Q ss_pred HhhhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCC
Q 039346 4 LRRYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDG 49 (71)
Q Consensus 4 f~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (71)
...||+..+|.|..-+|+-.+-.++..+.++..+.+|.....++..
T Consensus 476 lNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq 521 (966)
T KOG4286|consen 476 LNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQ 521 (966)
T ss_pred HHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhh
Confidence 3467888889988888888887777777788888899888766544
No 171
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.89 E-value=41 Score=17.50 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=27.7
Q ss_pred CCCcccHHHHHHHHHhh--CCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHH
Q 039346 11 GDGRLTKQELQDAFKSL--GSTFPAWRAWRALRHADANGDGCINEDELRELV 60 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 60 (71)
-||.++..|....-.-+ ....+..++..++.....-+...+++-.|-..+
T Consensus 41 ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l 92 (148)
T COG4103 41 ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVL 92 (148)
T ss_pred cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46777777765433332 445556666666655555555555555554444
No 172
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=47.10 E-value=30 Score=18.79 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=18.4
Q ss_pred hhhhccCCCcccHHHHHHHHHhh
Q 039346 5 RRYDTDGDGRLTKQELQDAFKSL 27 (71)
Q Consensus 5 ~~~d~~~~g~i~~~el~~~l~~~ 27 (71)
.-+|.+++|.++.+|+..+....
T Consensus 57 ~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 57 EGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HhhhhcccCCCCHHHHHHHHHHH
Confidence 34678899999999998877653
No 173
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=46.80 E-value=13 Score=16.48 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=16.7
Q ss_pred CcccHHHHHHHHHhhCCCCcHHHHHHHHHh
Q 039346 13 GRLTKQELQDAFKSLGSTFPAWRAWRALRH 42 (71)
Q Consensus 13 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 42 (71)
|.++.+-+.++++++-...-.+++..|+..
T Consensus 48 grvskavlvkmlrkly~~tk~e~vkrmlhl 77 (79)
T PF09061_consen 48 GRVSKAVLVKMLRKLYEATKNEEVKRMLHL 77 (79)
T ss_dssp S-EEHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhhchHHHHHHHHh
Confidence 667777777777775443344555655543
No 174
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=46.46 E-value=31 Score=15.71 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=16.2
Q ss_pred cCCCCCeeeHHHHHHHHHHHH
Q 039346 44 DANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 44 ~~~~~~~i~~~ef~~~~~~~~ 64 (71)
..+..|.|++..|++.+.-.+
T Consensus 12 ~~n~~G~iTl~gfLa~W~l~T 32 (76)
T PF08355_consen 12 VTNEKGWITLQGFLAQWSLTT 32 (76)
T ss_pred EEcCCCcCcHHHHHHHHHHHH
Confidence 456789999999999887544
No 175
>PHA00649 hypothetical protein
Probab=45.30 E-value=32 Score=15.52 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=16.9
Q ss_pred HHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 36 AWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 36 ~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
+...+..+..+.+..-..+||..-+....+|
T Consensus 19 V~~~~~~LGVD~~~P~~VEEFr~D~~~~Rr~ 49 (83)
T PHA00649 19 VKKVFAILGVDVDVPEQVEEFREDLRFGRRM 49 (83)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444555555555555556666666555544
No 176
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=42.91 E-value=16 Score=21.64 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=32.8
Q ss_pred hhccCCCcccHHHHHHHHHhhC-CCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHhcccC
Q 039346 7 YDTDGDGRLTKQELQDAFKSLG-STFPAWRAWRALRHADANGDGCINEDELRELVKYVIKRGYAL 70 (71)
Q Consensus 7 ~d~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~ 70 (71)
.++..+|+++.+++...+..-. ...+... -.+..... ...--.+.+|+..+...+++.+.++
T Consensus 104 ~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~-~~~e~~~t-e~GtVy~l~el~~i~~~~k~~~l~L 166 (342)
T COG2008 104 IVPGADGKLTPEDVEAAIRPDDIHHAPTPL-AVLENTAT-EGGTVYPLDELEAISAVCKEHGLPL 166 (342)
T ss_pred cCCCCCCCcCHHHHHHhhcCCCcccCCCce-EEEeeccC-CCceecCHHHHHHHHHHHHHhCCce
Confidence 3455789999999998776511 1111110 00011111 1223347777777777777766654
No 177
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=42.89 E-value=27 Score=13.98 Aligned_cols=15 Identities=27% Similarity=0.590 Sum_probs=8.6
Q ss_pred CCCeeeHHHHHHHHH
Q 039346 47 GDGCINEDELRELVK 61 (71)
Q Consensus 47 ~~~~i~~~ef~~~~~ 61 (71)
....++..||..++.
T Consensus 21 d~~~Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 21 DKDTLSKKELKELLE 35 (44)
T ss_dssp STTSEEHHHHHHHHH
T ss_pred CCCeEcHHHHHHHHH
Confidence 345566666666554
No 178
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=41.79 E-value=73 Score=18.72 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=14.1
Q ss_pred CCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhc
Q 039346 12 DGRLTKQELQDAFKSLGSTFPAWRAWRALRHAD 44 (71)
Q Consensus 12 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 44 (71)
.|.++.+|-...++..-...+...+..+++.++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg 332 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG 332 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC
Confidence 345555554444444322233334444444443
No 179
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=41.60 E-value=51 Score=16.90 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=18.3
Q ss_pred HHhhCCCCcHHHHHHHH----------HhhcCCCCCeeeHHHHHH
Q 039346 24 FKSLGSTFPAWRAWRAL----------RHADANGDGCINEDELRE 58 (71)
Q Consensus 24 l~~~~~~~~~~~~~~~~----------~~~~~~~~~~i~~~ef~~ 58 (71)
..++|...++.++..++ ..+-.+..|..+...|..
T Consensus 99 ~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~ 143 (145)
T PF13623_consen 99 FEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQ 143 (145)
T ss_pred HHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHh
Confidence 34456666666666555 112234566666555443
No 180
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=41.05 E-value=51 Score=16.68 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=33.5
Q ss_pred CCCcccHHHHHHHHHhhCC---------CCcHHHHHHHHHhhcCCCCC-eeeHHHHHHH
Q 039346 11 GDGRLTKQELQDAFKSLGS---------TFPAWRAWRALRHADANGDG-CINEDELREL 59 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~-~i~~~ef~~~ 59 (71)
++..++.+||.+++..-.. .....+++.+...+.....+ .++..|.+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 5678999999988876211 13567788888877775555 3777766543
No 181
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=40.86 E-value=41 Score=15.58 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=25.9
Q ss_pred CCCcccHHHHHHHHHhhC-CCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHH
Q 039346 11 GDGRLTKQELQDAFKSLG-STFPAWRAWRALRHADANGDGCINEDELRELVKY 62 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 62 (71)
-||.++.+|...+-..+. ...+......+...+........++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRR 64 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 478999888765544431 2233333334444443322222455666555544
No 182
>COG5562 Phage envelope protein [General function prediction only]
Probab=40.78 E-value=16 Score=18.66 Aligned_cols=26 Identities=8% Similarity=-0.070 Sum_probs=18.9
Q ss_pred HHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 39 ALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 39 ~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
+-......+.|..+|+||+..+....
T Consensus 77 i~~al~~~qsGqttF~ef~~~la~AG 102 (137)
T COG5562 77 IKTALRRHQSGQTTFEEFCSALAEAG 102 (137)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHhCC
Confidence 33455566789999999999776544
No 183
>PLN02223 phosphoinositide phospholipase C
Probab=40.67 E-value=97 Score=19.83 Aligned_cols=59 Identities=14% Similarity=0.041 Sum_probs=36.9
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhh---C--CCCcHHHHHHHHHhhcCCC--------CCeeeHHHHHHHHH
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSL---G--STFPAWRAWRALRHADANG--------DGCINEDELRELVK 61 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~---~--~~~~~~~~~~~~~~~~~~~--------~~~i~~~ef~~~~~ 61 (71)
.+|..+. .+.|..+.+.+...+..+ + ...+..+++.++..+.... .+.++.+.|..++.
T Consensus 20 ~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 20 NFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred HHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 3455553 556889999999988443 2 2344556666665543322 25689998888763
No 184
>PRK09462 fur ferric uptake regulator; Provisional
Probab=40.67 E-value=51 Score=16.63 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=17.8
Q ss_pred CCCcccHHHHHHHHHhhCCCCcHHHHHHHH
Q 039346 11 GDGRLTKQELQDAFKSLGSTFPAWRAWRAL 40 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~ 40 (71)
.++.++.+++...++.-+...+...+-..+
T Consensus 30 ~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L 59 (148)
T PRK09462 30 DNHHVSAEDLYKRLIDMGEEIGLATVYRVL 59 (148)
T ss_pred CCCCCCHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 346777777777777655555544433333
No 185
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=40.53 E-value=12 Score=17.59 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=0.0
Q ss_pred cCCCCCeeeHHHHHHHHHH
Q 039346 44 DANGDGCINEDELRELVKY 62 (71)
Q Consensus 44 ~~~~~~~i~~~ef~~~~~~ 62 (71)
...+.+.|+.++|+..+++
T Consensus 48 ~~rg~~~i~~eDl~F~lR~ 66 (93)
T PF02269_consen 48 QRRGSKKIKVEDLLFLLRK 66 (93)
T ss_dssp -------------------
T ss_pred hccccCcCcHHHHHHHHhc
Confidence 3445678999999888864
No 186
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=40.52 E-value=66 Score=19.45 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=37.3
Q ss_pred hhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 6 RYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 6 ~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
.+|+.+.|.++.-..+-.+..+..+...+..+.+|..... ..|-+.+..|..++..+.
T Consensus 118 A~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~isd-s~gim~~i~~~~fl~evl 175 (434)
T KOG4301|consen 118 AEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLISD-SRGIMQEIQRDQFLHEVL 175 (434)
T ss_pred hcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHH
Confidence 4577777888777777777766665556677777766654 346555555555555443
No 187
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=39.95 E-value=34 Score=21.15 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHhc
Q 039346 17 KQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKRG 67 (71)
Q Consensus 17 ~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~ 67 (71)
..++..++.........++...+...+-. |..++++|...+..+.+.+
T Consensus 296 MGDv~sLvEk~~~~~d~e~a~~~~~kl~~---g~FtL~Df~~Ql~~m~kmG 343 (451)
T COG0541 296 MGDVLSLIEKAEEVVDEEEAEKLAEKLKK---GKFTLEDFLEQLEQMKKMG 343 (451)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHccC
Confidence 34444444444444444455555555543 4588888888887776654
No 188
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=39.58 E-value=91 Score=19.55 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=28.7
Q ss_pred HhhhhccCCCcccHHHHHHHHHh-hCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 039346 4 LRRYDTDGDGRLTKQELQDAFKS-LGSTFPAWRAWRALRHADANGDGCINEDELRELVK 61 (71)
Q Consensus 4 f~~~d~~~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 61 (71)
.+..|-+.+|.|+.+|--.+++. +...-+...-.+. |. ..+..|+.+++...|.
T Consensus 74 HrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~---fH-~dD~~ItVedLWeaW~ 128 (575)
T KOG4403|consen 74 HRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEK---FH-GDDKHITVEDLWEAWK 128 (575)
T ss_pred HHhcccccCCCcccccchHHHHHHhhcccchhhhhhh---cc-CCccceeHHHHHHHHH
Confidence 34456667788887777766665 3222222222222 22 2456677777665553
No 189
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=39.48 E-value=42 Score=16.03 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=24.1
Q ss_pred CcccHHHHHHHHHhhCCCCcHHHH---HHHHHhhcCCCCCeeeHHHHHHHHH
Q 039346 13 GRLTKQELQDAFKSLGSTFPAWRA---WRALRHADANGDGCINEDELRELVK 61 (71)
Q Consensus 13 g~i~~~el~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~ef~~~~~ 61 (71)
...+.+++..++..+|. ..-+ ...++.........++-++...++.
T Consensus 34 ~p~s~~eL~~~l~~~g~---~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~ 82 (105)
T cd03035 34 DGLDAATLERWLAKVGW---ETLLNKRGTTWRKLDDAQKAALDAAKAIALML 82 (105)
T ss_pred CCCCHHHHHHHHHHhCh---HHHHccCchHHHhCChhhhccCCHHHHHHHHH
Confidence 46778888888887661 1111 1233333332223456666666553
No 190
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=39.25 E-value=24 Score=17.83 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=12.9
Q ss_pred cCCCcccHHHHHHHHHhhCC
Q 039346 10 DGDGRLTKQELQDAFKSLGS 29 (71)
Q Consensus 10 ~~~g~i~~~el~~~l~~~~~ 29 (71)
.+...|.+.+|+.++..+|.
T Consensus 14 GG~nki~MaeLr~~l~~~Gf 33 (137)
T PF08002_consen 14 GGKNKIKMAELREALEDLGF 33 (137)
T ss_dssp TTBS---HHHHHHHHHHCT-
T ss_pred CCCCcccHHHHHHHHHHcCC
Confidence 34457999999999998775
No 191
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=38.49 E-value=22 Score=19.21 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=23.0
Q ss_pred hHHhhhhccCCCcccHHHHHHHHHhhCCCCc
Q 039346 2 AWLRRYDTDGDGRLTKQELQDAFKSLGSTFP 32 (71)
Q Consensus 2 ~~f~~~d~~~~g~i~~~el~~~l~~~~~~~~ 32 (71)
++|..||+.+=-..+.+++..++...|.--+
T Consensus 59 eaF~~Fd~~kVA~~~~~dverLl~d~gIIR~ 89 (188)
T COG2818 59 EAFHGFDPEKVAAMTEEDVERLLADAGIIRN 89 (188)
T ss_pred HHHhcCCHHHHHcCCHHHHHHHHhCcchhhh
Confidence 5677888877777888888888887665443
No 192
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=38.01 E-value=54 Score=16.07 Aligned_cols=39 Identities=8% Similarity=0.133 Sum_probs=28.9
Q ss_pred hhhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhc
Q 039346 6 RYDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHAD 44 (71)
Q Consensus 6 ~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 44 (71)
.....++..++.+++..+|...|.......+..+.+.+.
T Consensus 9 L~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 9 LAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 334456678999999999999998777666666666553
No 193
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=37.64 E-value=49 Score=16.00 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=12.5
Q ss_pred CCeeeHHHHHHHHHHHHHh
Q 039346 48 DGCINEDELRELVKYVIKR 66 (71)
Q Consensus 48 ~~~i~~~ef~~~~~~~~~~ 66 (71)
.|.|+.+||...+..+...
T Consensus 27 ~~~is~~ef~~iI~~IN~~ 45 (118)
T PF10256_consen 27 SGYISPEEFEEIINTINQI 45 (118)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 4567777777777666543
No 194
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=37.27 E-value=39 Score=21.17 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.8
Q ss_pred cCCCcccHHHHH-HHHHhhCCCCcHHHHHHHHHhhcCC
Q 039346 10 DGDGRLTKQELQ-DAFKSLGSTFPAWRAWRALRHADAN 46 (71)
Q Consensus 10 ~~~g~i~~~el~-~~l~~~~~~~~~~~~~~~~~~~~~~ 46 (71)
+=+|.|+..++- .+....|..++...+..++...+.+
T Consensus 381 DiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rN 418 (580)
T COG5083 381 DIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRN 418 (580)
T ss_pred ecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccC
Confidence 347999988876 7778789999888888888877755
No 195
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=36.74 E-value=42 Score=14.52 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=22.8
Q ss_pred HHHHHHhhcCCCCCeeeHHHHHHHHHHHHHhc
Q 039346 36 AWRALRHADANGDGCINEDELRELVKYVIKRG 67 (71)
Q Consensus 36 ~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~ 67 (71)
+...+..+...-...++..|...+++.+.++.
T Consensus 38 v~~~~~~~N~~~~~PL~~~Ev~~i~kSi~k~~ 69 (71)
T PF08708_consen 38 VLSLAQAINSNFSPPLPESEVKAIAKSIAKWT 69 (71)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 55555555544477889999999888887764
No 196
>COG4339 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.69 E-value=73 Score=17.21 Aligned_cols=52 Identities=6% Similarity=0.004 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHh
Q 039346 15 LTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 15 i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
.+.-.+...+..+|...+..-+..++..+.....-.-+......++..+..+
T Consensus 4 ~~~~~wq~l~q~lg~~~~~~~f~~L~aaY~~~dRHYH~l~HI~a~L~~~~~~ 55 (208)
T COG4339 4 AEDYQWQQLLQNLGVDKTTQVFTHLIAAYSSPDRHYHTLKHISAVLQTIQTL 55 (208)
T ss_pred HHHHhHHHHHHHhcCCCchHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHH
Confidence 3445567777888887777777778877776555555666666666655544
No 197
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=36.36 E-value=68 Score=16.80 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=33.5
Q ss_pred hccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcC-----------CCCCeeeHHHHHHHHH
Q 039346 8 DTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADA-----------NGDGCINEDELRELVK 61 (71)
Q Consensus 8 d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~~~ef~~~~~ 61 (71)
+++...+|..+.+.+.|..||+.-.-+++..++..+.. -.+-.|+-+|+...-.
T Consensus 60 ~~e~KKTIa~EHV~KALe~LgF~eYiee~~~vl~~~K~~~~~~~~kssk~e~~Gi~eEEL~~qQq 124 (156)
T KOG0871|consen 60 NKEAKKTIAPEHVIKALENLGFGEYIEEAEEVLENCKEEAKKRRRKSSKFEKSGIPEEELLRQQQ 124 (156)
T ss_pred hHHhcccCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhcCCCHHHHHHHHH
Confidence 44556799999999999999887444444444433311 1234477777766543
No 198
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=36.18 E-value=96 Score=18.46 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=26.5
Q ss_pred HhhhhccCCCcccHHHHHHHHHhhCCCCc----------HHHHHHHHHhhcCCC
Q 039346 4 LRRYDTDGDGRLTKQELQDAFKSLGSTFP----------AWRAWRALRHADANG 47 (71)
Q Consensus 4 f~~~d~~~~g~i~~~el~~~l~~~~~~~~----------~~~~~~~~~~~~~~~ 47 (71)
|...+.++.+.++..+...++..++.... ..++..++......+
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G 184 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEG 184 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCC
Confidence 33344444567889999999988754321 245566665555443
No 199
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=36.02 E-value=71 Score=16.92 Aligned_cols=34 Identities=18% Similarity=0.021 Sum_probs=19.3
Q ss_pred cCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhh
Q 039346 10 DGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHA 43 (71)
Q Consensus 10 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 43 (71)
.+...|+.+++..+|..||+.-.-+.+...+.++
T Consensus 82 EkRKTIngdDllwAm~tLGFe~Y~eplkiyL~kY 115 (168)
T KOG0869|consen 82 EKRKTINGDDLLWAMSTLGFENYAEPLKIYLQKY 115 (168)
T ss_pred HhcCcccHHHHHHHHHHcCcHhHHHHHHHHHHHH
Confidence 3456677777777777776654444444333333
No 200
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=35.63 E-value=32 Score=12.86 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=10.7
Q ss_pred ccHHHHHHHHHhhCCCC
Q 039346 15 LTKQELQDAFKSLGSTF 31 (71)
Q Consensus 15 i~~~el~~~l~~~~~~~ 31 (71)
++..|++..++..|.+.
T Consensus 4 l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 4 LTVAELKEELKERGLST 20 (35)
T ss_dssp SHHHHHHHHHHHTTS-S
T ss_pred CcHHHHHHHHHHCCCCC
Confidence 45677777777766544
No 201
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=35.50 E-value=32 Score=16.43 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=10.0
Q ss_pred CCCeeeHHHHHHHHHHHH
Q 039346 47 GDGCINEDELRELVKYVI 64 (71)
Q Consensus 47 ~~~~i~~~ef~~~~~~~~ 64 (71)
.+|.++.++|...|..+.
T Consensus 3 ~d~~~~~~~F~~~W~sl~ 20 (114)
T PF09066_consen 3 EDGSMDPEEFQEMWKSLP 20 (114)
T ss_dssp TT----HHHHHHHHHHS-
T ss_pred CCCccCHHHHHHHHHhCC
Confidence 357888888888887654
No 202
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.20 E-value=47 Score=14.58 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=13.8
Q ss_pred CCCeeeHHHHHHHHHHHHH
Q 039346 47 GDGCINEDELRELVKYVIK 65 (71)
Q Consensus 47 ~~~~i~~~ef~~~~~~~~~ 65 (71)
..|.|+++.|+...+.+.+
T Consensus 36 ~~g~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 36 QRGSIDLDTFLKQVRSLAR 54 (65)
T ss_dssp HTTSS-HHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH
Confidence 3567999999988887654
No 203
>PF14164 YqzH: YqzH-like protein
Probab=35.10 E-value=48 Score=14.68 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=16.4
Q ss_pred HHHHHHHhhcCC-CCCeeeHHHHHHHHHHHH
Q 039346 35 RAWRALRHADAN-GDGCINEDELRELVKYVI 64 (71)
Q Consensus 35 ~~~~~~~~~~~~-~~~~i~~~ef~~~~~~~~ 64 (71)
.+...++.+..+ +...++-.|+..+..++.
T Consensus 9 mi~~~l~QYg~d~~~~pls~~E~~~L~~~i~ 39 (64)
T PF14164_consen 9 MIINCLRQYGYDVECMPLSDEEWEELCKHIQ 39 (64)
T ss_pred HHHHHHHHhCCcccCCCCCHHHHHHHHHHHH
Confidence 344555555444 445566666666665554
No 204
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=34.07 E-value=53 Score=16.24 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=13.7
Q ss_pred cCCCcccHHHHHHHHHh
Q 039346 10 DGDGRLTKQELQDAFKS 26 (71)
Q Consensus 10 ~~~g~i~~~el~~~l~~ 26 (71)
|-+|.++.+++.+++..
T Consensus 6 DtSGSis~~~l~~fl~e 22 (126)
T PF09967_consen 6 DTSGSISDEELRRFLSE 22 (126)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 45799999998887765
No 205
>PF07199 DUF1411: Protein of unknown function (DUF1411); InterPro: IPR009850 This family represents a conserved region approximately 150 residues long that is sometimes repeated within some Babesia bovis proteins of unknown function.
Probab=33.96 E-value=85 Score=17.19 Aligned_cols=55 Identities=5% Similarity=-0.081 Sum_probs=28.1
Q ss_pred ccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHH
Q 039346 9 TDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYV 63 (71)
Q Consensus 9 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 63 (71)
+...+.-..+.+.+.+..-+...-...+..-+..++......-.++.|...+...
T Consensus 133 P~~~~f~vseNIVk~LNK~~~i~lp~~LA~~L~~i~tgk~~~~e~~~f~d~fa~~ 187 (194)
T PF07199_consen 133 PKNPIFAVSENIVKKLNKKGTIELPEDLAQQLCQIDTGKMRGYEWEVFTDCFADY 187 (194)
T ss_pred CCCcchhhHHHHHHHHcCCCCccchHHHHHHHhccccCccccchHHHHHHHHHHH
Confidence 3344445555555555553322223344555555665555555666666655443
No 206
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=33.90 E-value=58 Score=15.24 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=25.8
Q ss_pred CcccHHHHHHHHHhhCCCC--------------------cHHHHHHHHHhhcCCCCCee
Q 039346 13 GRLTKQELQDAFKSLGSTF--------------------PAWRAWRALRHADANGDGCI 51 (71)
Q Consensus 13 g~i~~~el~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~i 51 (71)
..++.++|.+-++.+.... ++.++...++.+..+.+..+
T Consensus 18 ~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l 76 (83)
T cd06404 18 PSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSEL 76 (83)
T ss_pred CCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcccE
Confidence 4677888887777653221 46677888887777666544
No 207
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=33.88 E-value=96 Score=17.74 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=28.2
Q ss_pred CcccHHHHHHHHHh-----hCCCCcHHHHHHHHHhh-cC---CCCCeeeHHHHHH
Q 039346 13 GRLTKQELQDAFKS-----LGSTFPAWRAWRALRHA-DA---NGDGCINEDELRE 58 (71)
Q Consensus 13 g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~-~~---~~~~~i~~~ef~~ 58 (71)
..++..++..+|+. .+++++++.+..+-..+ .. ..+..|+|..|..
T Consensus 177 ~~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 177 PKVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp SEEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 57788888887755 58889888877666433 32 2457899988853
No 208
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=33.75 E-value=27 Score=16.47 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=10.4
Q ss_pred cCCCcccHHHHHHH
Q 039346 10 DGDGRLTKQELQDA 23 (71)
Q Consensus 10 ~~~g~i~~~el~~~ 23 (71)
++.|.|+...++++
T Consensus 71 D~gGWITPsNIkqi 84 (87)
T PF15017_consen 71 DGGGWITPSNIKQI 84 (87)
T ss_pred CCCccccchhhhhh
Confidence 45589998888764
No 209
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=33.54 E-value=60 Score=15.27 Aligned_cols=49 Identities=6% Similarity=0.039 Sum_probs=34.5
Q ss_pred CCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 11 GDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
++|.|+.++...+.. ...+.+.++.++.... ..|....+-|...+..+.
T Consensus 26 ~n~~it~E~y~~V~a---~~T~qdkmRkLld~v~--akG~~~k~~F~~iL~e~~ 74 (85)
T cd08324 26 KNDYFSTEDAEIVCA---CPTQPDKVRKILDLVQ--SKGEEVSEYFLYLLQQLA 74 (85)
T ss_pred ccCCccHHHHHHHHh---CCCCHHHHHHHHHHHH--hcCchHHHHHHHHHHHHH
Confidence 578899888875544 4566788888887754 345566777877776655
No 210
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=32.72 E-value=9.5 Score=21.72 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=27.0
Q ss_pred CcccHHHHHHHHHhhCCCCcHHHHHHH-HHhhcCC-CCCeeeHHHHHHHHHHHHHhccc
Q 039346 13 GRLTKQELQDAFKSLGSTFPAWRAWRA-LRHADAN-GDGCINEDELRELVKYVIKRGYA 69 (71)
Q Consensus 13 g~i~~~el~~~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~i~~~ef~~~~~~~~~~~~~ 69 (71)
|.++.+++...+...+...... ..+ +...... +.-..+++|+..+.....+.+.+
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~--~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~ 160 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQP--AVVSLENTTELAGGTVYSLEELRAISELAREHGLP 160 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGE--EEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-E
T ss_pred CCCCHHHHHHHhhhccccCCCc--cEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceE
Confidence 9999999999888754411100 000 0111111 12235777777777777666554
No 211
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.45 E-value=1.5e+02 Score=19.34 Aligned_cols=44 Identities=30% Similarity=0.358 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 15 LTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 15 i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
++.+|+. ....-.+..++.++..++. +++.++-+++..++....
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~ 47 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSI 47 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHH
Confidence 6666666 2222335667777777776 677787777777665443
No 212
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=31.20 E-value=53 Score=14.13 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=15.2
Q ss_pred HHHHhhcCCCCCeeeHHHHHH
Q 039346 38 RALRHADANGDGCINEDELRE 58 (71)
Q Consensus 38 ~~~~~~~~~~~~~i~~~ef~~ 58 (71)
.+...++.+++|.|+...+..
T Consensus 19 fL~~~~~~~~~g~Vpi~~i~~ 39 (61)
T PF05383_consen 19 FLRSQMDSNPDGWVPISTILS 39 (61)
T ss_dssp HHHHHHCTTTTTBEEHHHHTT
T ss_pred HHHHHHHhcCCCcEeHHHHHc
Confidence 456777777889999875544
No 213
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=31.14 E-value=53 Score=13.92 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=13.9
Q ss_pred eeHHHHHHHHHHHHHhccc
Q 039346 51 INEDELRELVKYVIKRGYA 69 (71)
Q Consensus 51 i~~~ef~~~~~~~~~~~~~ 69 (71)
++++.+...+..+.+.+-+
T Consensus 31 Vpy~~ls~~~q~I~r~GGk 49 (56)
T PF01383_consen 31 VPYSQLSQEMQRINRQGGK 49 (56)
T ss_dssp EEHHHHHHHHHHHHHCT-E
T ss_pred EcHHHhHHHHHHHHHCCCE
Confidence 7788888888888776544
No 214
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=30.88 E-value=87 Score=19.31 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=15.2
Q ss_pred CCeeeHHHHHHHHHHHHHhc
Q 039346 48 DGCINEDELRELVKYVIKRG 67 (71)
Q Consensus 48 ~~~i~~~ef~~~~~~~~~~~ 67 (71)
.|..++++|...+..+++.+
T Consensus 317 ~~~f~l~d~~~q~~~~~kmG 336 (437)
T PRK00771 317 KGKFTLKDMYKQLEAMNKMG 336 (437)
T ss_pred cCCcCHHHHHHHHHHHHhcC
Confidence 36788888888888777664
No 215
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=30.84 E-value=1.2e+02 Score=18.03 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=19.1
Q ss_pred hhccCCCcccHHHHHHHHHhhCCCCcHHHHHH
Q 039346 7 YDTDGDGRLTKQELQDAFKSLGSTFPAWRAWR 38 (71)
Q Consensus 7 ~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~ 38 (71)
|.+..+|.++..++..+|. ...++.+++.+
T Consensus 211 fspersG~lP~~dlv~lcf--Sgk~t~~El~k 240 (358)
T COG3426 211 FSPERSGTLPTGDLVRLCF--SGKYTEEELLK 240 (358)
T ss_pred CCcccCCCCChHHHHHHHh--cCcccHHHHHH
Confidence 4456778888888877665 34455555433
No 216
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=30.45 E-value=41 Score=12.44 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=12.1
Q ss_pred cccHHHHHHHHHhhCCCC
Q 039346 14 RLTKQELQDAFKSLGSTF 31 (71)
Q Consensus 14 ~i~~~el~~~l~~~~~~~ 31 (71)
.++..+++..++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 456677888888766544
No 217
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=30.27 E-value=76 Score=15.50 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=19.5
Q ss_pred cHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHhc
Q 039346 32 PAWRAWRALRHADANGDGCINEDELRELVKYVIKRG 67 (71)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~ 67 (71)
+.++++.++... ...++-+++-.++.-+.++.
T Consensus 80 ~~dElrai~~~~----~~~~~~e~l~~ILd~l~k~~ 111 (112)
T PRK14981 80 TRDELRAIFAKE----RYTLSPEELDEILDIVKKYR 111 (112)
T ss_pred CHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHhh
Confidence 345566666444 34566677777777776653
No 218
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=29.40 E-value=76 Score=15.23 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=20.3
Q ss_pred CCcccHHHHHHHHHhhCCCCcHHHHHHHHHhh
Q 039346 12 DGRLTKQELQDAFKSLGSTFPAWRAWRALRHA 43 (71)
Q Consensus 12 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 43 (71)
++.++.+++.+.++.-+...+...+-..++.+
T Consensus 21 ~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L 52 (120)
T PF01475_consen 21 PEHLTAEEIYDKLRKKGPRISLATVYRTLDLL 52 (120)
T ss_dssp SSSEEHHHHHHHHHHTTTT--HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhhhccCCcCHHHHHHHHHHH
Confidence 34888888888888767666666554444443
No 219
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=29.38 E-value=1.4e+02 Score=18.23 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=26.5
Q ss_pred CcccHHHHHHHHHhhCCCCcHHHHHHHHHhh-cCCCCCeeeHHHHHHHHHHHHHh
Q 039346 13 GRLTKQELQDAFKSLGSTFPAWRAWRALRHA-DANGDGCINEDELRELVKYVIKR 66 (71)
Q Consensus 13 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~ef~~~~~~~~~~ 66 (71)
..++-+||...|.. ... +.+.|...+... +.=-.=++.|.||+.++..|.+.
T Consensus 6 ~~~~LeeLe~kLa~-~d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie~~ 58 (379)
T PF11593_consen 6 PNLKLEELEEKLAS-NDN-SKDSVMDKISEAQDSILPLRLQFNEFIQTMANIEEM 58 (379)
T ss_pred CCCcHHHHHHHHhc-CCc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 45667777777763 333 444443333222 21123345667777776666443
No 220
>PF13592 HTH_33: Winged helix-turn helix
Probab=29.31 E-value=57 Score=13.73 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=21.5
Q ss_pred CcccHHHHHHHHHh-hCCCCcHHHHHHHHHhhc
Q 039346 13 GRLTKQELQDAFKS-LGSTFPAWRAWRALRHAD 44 (71)
Q Consensus 13 g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~~ 44 (71)
+.-+..++..++.. .|..++...+..+++++.
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G 35 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLG 35 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHHcC
Confidence 45566677777755 577777777777776654
No 221
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=29.08 E-value=1.1e+02 Score=17.13 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=30.5
Q ss_pred ccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcC
Q 039346 9 TDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADA 45 (71)
Q Consensus 9 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 45 (71)
-+++|.++-..+..-+.++-..++..++..+-+++..
T Consensus 162 G~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL~A 198 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRLRA 198 (224)
T ss_pred cCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHHHH
Confidence 3578999999999999999889998888877766643
No 222
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=29.07 E-value=52 Score=13.16 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=10.6
Q ss_pred cHHHHHHHHHhhCCCCcHHH
Q 039346 16 TKQELQDAFKSLGSTFPAWR 35 (71)
Q Consensus 16 ~~~el~~~l~~~~~~~~~~~ 35 (71)
+.+++..+.+..|..++..+
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~e 47 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEE 47 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHH
Confidence 44555555555555555443
No 223
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=28.88 E-value=1e+02 Score=16.49 Aligned_cols=10 Identities=10% Similarity=0.381 Sum_probs=3.7
Q ss_pred eeHHHHHHHH
Q 039346 51 INEDELRELV 60 (71)
Q Consensus 51 i~~~ef~~~~ 60 (71)
++|++|..+|
T Consensus 19 ~~F~~F~~~W 28 (194)
T PF09808_consen 19 VRFEDFKRLW 28 (194)
T ss_pred CCHHHHHHHH
Confidence 3333333333
No 224
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.68 E-value=1.1e+02 Score=17.10 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=15.6
Q ss_pred cCCCcccHHHHHHHHHhhCCC
Q 039346 10 DGDGRLTKQELQDAFKSLGST 30 (71)
Q Consensus 10 ~~~g~i~~~el~~~l~~~~~~ 30 (71)
..||.|+..|-..+...+...
T Consensus 122 kaDGhIDe~ERa~I~~~l~es 142 (225)
T COG2979 122 KADGHIDEKERARIMQKLQES 142 (225)
T ss_pred hhcCCcCHHHHHHHHHHHHHc
Confidence 458999999988888665433
No 225
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=28.42 E-value=94 Score=15.94 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=28.3
Q ss_pred CCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhc
Q 039346 11 GDGRLTKQELQDAFKSLGSTFPAWRAWRALRHAD 44 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 44 (71)
.....+.+|+...++..|...+...+-..++.+.
T Consensus 13 ~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 13 EEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred cCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 4567889999999999999999998887777664
No 226
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=28.33 E-value=46 Score=12.40 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=12.1
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHhhcC
Q 039346 18 QELQDAFKSLGSTFPAWRAWRALRHADA 45 (71)
Q Consensus 18 ~el~~~l~~~~~~~~~~~~~~~~~~~~~ 45 (71)
+.+..++. +| ++...+...+...+.
T Consensus 4 ~~v~~L~~-mG--f~~~~~~~AL~~~~~ 28 (37)
T PF00627_consen 4 EKVQQLME-MG--FSREQAREALRACNG 28 (37)
T ss_dssp HHHHHHHH-HT--S-HHHHHHHHHHTTT
T ss_pred HHHHHHHH-cC--CCHHHHHHHHHHcCC
Confidence 33444444 34 445566666655554
No 227
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=28.03 E-value=81 Score=15.08 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=9.5
Q ss_pred CCcccHHHHHHHHHh
Q 039346 12 DGRLTKQELQDAFKS 26 (71)
Q Consensus 12 ~g~i~~~el~~~l~~ 26 (71)
+|.++.+||..-+..
T Consensus 37 ~~~i~~EeF~~~Lq~ 51 (92)
T smart00549 37 NGTITAEEFTSRLQE 51 (92)
T ss_pred hCCCCHHHHHHHHHH
Confidence 466677777666654
No 228
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=27.64 E-value=1.3e+02 Score=18.58 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=15.3
Q ss_pred CCeeeHHHHHHHHHHHHHhc
Q 039346 48 DGCINEDELRELVKYVIKRG 67 (71)
Q Consensus 48 ~~~i~~~ef~~~~~~~~~~~ 67 (71)
.|..++++|...+..+++.+
T Consensus 324 ~~~f~l~D~~~q~~~i~kmG 343 (429)
T TIGR01425 324 EGTFTLRDMYEQFQNLLKMG 343 (429)
T ss_pred hCCCCHHHHHHHHHHHHhcc
Confidence 36788888888888777654
No 229
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=27.47 E-value=1.1e+02 Score=16.55 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=15.0
Q ss_pred cCCCcccHHHHHHHHHhhCC
Q 039346 10 DGDGRLTKQELQDAFKSLGS 29 (71)
Q Consensus 10 ~~~g~i~~~el~~~l~~~~~ 29 (71)
..||.|+.+|-..+...+..
T Consensus 91 kADG~ID~~Er~~I~~~l~~ 110 (188)
T PF04391_consen 91 KADGHIDEEERQRIEGALQE 110 (188)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 45789999998888766543
No 230
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=27.34 E-value=47 Score=12.10 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=9.4
Q ss_pred CCcccHHHHHHHHH
Q 039346 12 DGRLTKQELQDAFK 25 (71)
Q Consensus 12 ~g~i~~~el~~~l~ 25 (71)
.|.|+.+|+...-.
T Consensus 14 ~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 14 KGEISEEEYEQKKA 27 (31)
T ss_pred cCCCCHHHHHHHHH
Confidence 57788777765433
No 231
>PRK10867 signal recognition particle protein; Provisional
Probab=27.24 E-value=1.6e+02 Score=18.24 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=14.2
Q ss_pred CeeeHHHHHHHHHHHHHhc
Q 039346 49 GCINEDELRELVKYVIKRG 67 (71)
Q Consensus 49 ~~i~~~ef~~~~~~~~~~~ 67 (71)
|..++++|...+..+.+.+
T Consensus 326 g~f~l~d~~~q~~~~~kmG 344 (433)
T PRK10867 326 GKFDLEDFLEQLQQMKKMG 344 (433)
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 5678888888887777654
No 232
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=27.17 E-value=85 Score=15.06 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=11.4
Q ss_pred CeeeHHHHHHHHHHHHHh
Q 039346 49 GCINEDELRELVKYVIKR 66 (71)
Q Consensus 49 ~~i~~~ef~~~~~~~~~~ 66 (71)
.+++-++.-.++.-+.++
T Consensus 99 ~r~~ee~l~~iL~~v~~~ 116 (117)
T PF03874_consen 99 SRFSEEDLEEILDLVSKY 116 (117)
T ss_dssp TTSTHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 456667777776666554
No 233
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=26.42 E-value=69 Score=13.72 Aligned_cols=30 Identities=7% Similarity=0.026 Sum_probs=14.4
Q ss_pred cHHHHHHHHH-hhCCCCcHHHHHHHHHhhcC
Q 039346 16 TKQELQDAFK-SLGSTFPAWRAWRALRHADA 45 (71)
Q Consensus 16 ~~~el~~~l~-~~~~~~~~~~~~~~~~~~~~ 45 (71)
+.+++.+.+. ....+++..++..-.+.+..
T Consensus 5 ~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~ 35 (69)
T PF00690_consen 5 SVEEVLKRLNTSSSQGLSSEEVEERRKKYGP 35 (69)
T ss_dssp SHHHHHHHHTTBTSSBBTHHHHHHHHHHHSS
T ss_pred CHHHHHHHHCcCCCCCCCHHHHHHHHHhccc
Confidence 3344444444 33445555555555555544
No 234
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=26.21 E-value=96 Score=15.34 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=26.4
Q ss_pred cCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhc
Q 039346 10 DGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHAD 44 (71)
Q Consensus 10 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 44 (71)
.++..++.+++..+|...|.......+..+++.+.
T Consensus 13 ~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 13 GGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 45667999999999999888776666666665553
No 235
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=26.04 E-value=2.4e+02 Score=19.86 Aligned_cols=45 Identities=7% Similarity=0.093 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 17 KQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 17 ~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
.+.+..++..+.. ..+++.+|..+..+....++.++|..+++.-+
T Consensus 207 ~e~f~~~l~klcp---R~eie~iF~ki~~~~kpylT~~ql~dfln~~Q 251 (1189)
T KOG1265|consen 207 LEKFYRLLNKLCP---RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQ 251 (1189)
T ss_pred HHHHHHHHHhcCC---chhHHHHHHHhccCCCccccHHHHHHHHhhhc
Confidence 3334444444333 46778899999988888999999999887533
No 236
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=25.96 E-value=86 Score=22.97 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCCCCCeeeHHHHHHHHHHHH
Q 039346 34 WRAWRALRHADANGDGCINEDELRELVKYVI 64 (71)
Q Consensus 34 ~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 64 (71)
++..++|+.+|++..|.|.+.....+++.+.
T Consensus 1417 ~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ 1447 (1592)
T KOG2301|consen 1417 EKFYEAWDEFDPEATQEIPYSDLSAFLRSLD 1447 (1592)
T ss_pred HHHHHHHHhcChhhheeeeHhhHHHHHHhcC
Confidence 4567789999999999999998888887654
No 237
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=25.65 E-value=85 Score=14.52 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=10.9
Q ss_pred HHHHHHHhhCCCCcHHHHHH
Q 039346 19 ELQDAFKSLGSTFPAWRAWR 38 (71)
Q Consensus 19 el~~~l~~~~~~~~~~~~~~ 38 (71)
|+-.+|+.+|..++.++...
T Consensus 21 EIL~ALrkLge~Ls~eE~~F 40 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAF 40 (78)
T ss_dssp HHHHHHHHTT----HHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 45567888999998877543
No 238
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=25.53 E-value=97 Score=15.76 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=20.0
Q ss_pred CCCCCeeeHHHHHHHHHHHHHhccc
Q 039346 45 ANGDGCINEDELRELVKYVIKRGYA 69 (71)
Q Consensus 45 ~~~~~~i~~~ef~~~~~~~~~~~~~ 69 (71)
...|+.++|+.+...+..+++-|..
T Consensus 102 i~aD~~v~y~~vv~vm~~l~~aG~~ 126 (137)
T COG0848 102 IRADKNVKYGTVVKVMDLLKEAGFK 126 (137)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCc
Confidence 4567889999999999988877643
No 239
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=25.48 E-value=1.2e+02 Score=18.72 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=14.1
Q ss_pred CeeeHHHHHHHHHHHHHhc
Q 039346 49 GCINEDELRELVKYVIKRG 67 (71)
Q Consensus 49 ~~i~~~ef~~~~~~~~~~~ 67 (71)
|..++++|...+..+.+.+
T Consensus 325 ~~f~l~d~~~q~~~~~kmG 343 (428)
T TIGR00959 325 GQFDLEDFLEQLRQIKKMG 343 (428)
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 6678888888887777654
No 240
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=25.14 E-value=60 Score=12.65 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=9.4
Q ss_pred CCcccHHHHHHHH
Q 039346 12 DGRLTKQELQDAF 24 (71)
Q Consensus 12 ~g~i~~~el~~~l 24 (71)
-|.|+.+|...+.
T Consensus 24 ~g~IT~eey~eIT 36 (40)
T PF09693_consen 24 AGWITKEEYKEIT 36 (40)
T ss_pred cCeECHHHHHHhh
Confidence 4788888887653
No 241
>PF05901 Excalibur: Excalibur calcium-binding domain; InterPro: IPR008613 Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated [].
Probab=25.11 E-value=37 Score=12.96 Aligned_cols=9 Identities=56% Similarity=1.014 Sum_probs=5.5
Q ss_pred hhhccCCCc
Q 039346 6 RYDTDGDGR 14 (71)
Q Consensus 6 ~~d~~~~g~ 14 (71)
.+|.+++|.
T Consensus 26 ~LDrD~DGi 34 (37)
T PF05901_consen 26 KLDRDGDGI 34 (37)
T ss_pred cccCCCCCC
Confidence 356666664
No 242
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=24.93 E-value=74 Score=21.13 Aligned_cols=59 Identities=29% Similarity=0.346 Sum_probs=32.7
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCcH---------HHHHHHHHhhcCCCC-----------------------Ce
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFPA---------WRAWRALRHADANGD-----------------------GC 50 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~-----------------------~~ 50 (71)
++..+|.+-++.++..++......++..... .+...++...|..++ +.
T Consensus 442 ~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s~~~ 521 (975)
T KOG2419|consen 442 ILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKSFGV 521 (975)
T ss_pred cccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccccccCe
Confidence 3445566666766666655544443221110 112335555555555 88
Q ss_pred eeHHHHHHHHH
Q 039346 51 INEDELRELVK 61 (71)
Q Consensus 51 i~~~ef~~~~~ 61 (71)
+..+|...++.
T Consensus 522 vtVDe~v~ll~ 532 (975)
T KOG2419|consen 522 VTVDELVALLA 532 (975)
T ss_pred eEHHHHHHHHH
Confidence 99999888776
No 243
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=24.82 E-value=89 Score=14.45 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=11.7
Q ss_pred cHHHHHHHHHhhCCCCcHHHHH
Q 039346 16 TKQELQDAFKSLGSTFPAWRAW 37 (71)
Q Consensus 16 ~~~el~~~l~~~~~~~~~~~~~ 37 (71)
+.+++..+.+-....+++.++.
T Consensus 2 ~~~~v~~lA~La~L~l~eee~~ 23 (93)
T TIGR00135 2 SDEEVKHLAKLARLELSEEEAE 23 (93)
T ss_pred CHHHHHHHHHHhCCCCCHHHHH
Confidence 4455655555545555555543
No 244
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=24.64 E-value=76 Score=13.60 Aligned_cols=26 Identities=15% Similarity=0.007 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHhhCCCCcHHHHHHH
Q 039346 14 RLTKQELQDAFKSLGSTFPAWRAWRA 39 (71)
Q Consensus 14 ~i~~~el~~~l~~~~~~~~~~~~~~~ 39 (71)
..+.+++..+.+..|+.++..++...
T Consensus 24 ~~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 24 AEDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred cCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34578888888888999988887653
No 245
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=24.55 E-value=57 Score=19.53 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=16.9
Q ss_pred hccCCCcccHHHHHHHHHhhC
Q 039346 8 DTDGDGRLTKQELQDAFKSLG 28 (71)
Q Consensus 8 d~~~~g~i~~~el~~~l~~~~ 28 (71)
|.+.||+|+.+.+.+.+..++
T Consensus 177 d~DdDgwitp~ni~~~~~e~~ 197 (376)
T KOG2463|consen 177 DADDDGWITPSNITEAIIELG 197 (376)
T ss_pred ccccccccccchHHHHHHhhh
Confidence 456789999999998887754
No 246
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=24.30 E-value=1.2e+02 Score=21.46 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=29.4
Q ss_pred CCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCC
Q 039346 11 GDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADAN 46 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 46 (71)
-.|.|+...+-.++.++|...+..++..+|..+..+
T Consensus 1134 MRGfiTsn~Il~vle~iG~~h~a~Dl~~iF~lmNl~ 1169 (1301)
T PF05788_consen 1134 MRGFITSNTILNVLEKIGFGHSASDLATIFTLMNLE 1169 (1301)
T ss_pred hhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHhccc
Confidence 358999999999999999988888777777666554
No 247
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=24.12 E-value=1.2e+02 Score=15.68 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=24.5
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHh--hcCCCCC---ee-eHHHHHHHHHHHHHh
Q 039346 18 QELQDAFKSLGSTFPAWRAWRALRH--ADANGDG---CI-NEDELRELVKYVIKR 66 (71)
Q Consensus 18 ~el~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~---~i-~~~ef~~~~~~~~~~ 66 (71)
.+|++++.. ...-..-+..||.. +..+..| .| ++++++.++..+-..
T Consensus 6 qefk~lIe~--dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~ 58 (141)
T PF12588_consen 6 QEFKDLIES--DPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTT 58 (141)
T ss_pred HHHHHHHhc--CHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhh
Confidence 456666653 11112334556655 2222333 23 688888888777643
No 248
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=24.10 E-value=1.6e+02 Score=19.02 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=27.1
Q ss_pred hhccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcC
Q 039346 7 YDTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADA 45 (71)
Q Consensus 7 ~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 45 (71)
.+..+.|.++.+|..++|..+...-.+.++..+++....
T Consensus 464 verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~ 502 (548)
T PF02459_consen 464 VERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAAL 502 (548)
T ss_pred HhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhc
Confidence 345566778888888888887766666666666665543
No 249
>COG2162 NhoA Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.03 E-value=1.6e+02 Score=17.16 Aligned_cols=68 Identities=10% Similarity=0.060 Sum_probs=44.5
Q ss_pred HHhhhhccCCCcccHHHHHHHHHhhCCCCcH------------HHHHHHHHhhcCCCCCeeeHHHHHHHHHHHHHhcccC
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFKSLGSTFPA------------WRAWRALRHADANGDGCINEDELRELVKYVIKRGYAL 70 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~ 70 (71)
.|.+++..+-+..+.+.+..+.......++- -..+.++...-..+.|.-+|+.=-.+...+...++++
T Consensus 9 yf~rI~~~~~~~psld~L~~l~~ah~~tiPFENlDvLL~~~i~i~~~al~~KLv~~rRGGyCfElNglf~~vL~~lGF~v 88 (275)
T COG2162 9 YFARIGYSGATDPSLDTLRALHTAHNRTIPFENLDVLLGRPIQLDPQALEDKLVLARRGGYCFELNGLFGRVLRELGFNV 88 (275)
T ss_pred HHHHhCCCCCCCCCHHHHHHHHHHhhccCCcccchhhcCCCccCCHHHHHHHHHhccccceehhhhhHHHHHHHHcCCcc
Confidence 4666666666777777777776653332221 2235577777777788899987666667777777765
No 250
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.01 E-value=97 Score=14.64 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=21.9
Q ss_pred CCcccHHHHHHHHHhhCCCCcHHHHHHHHHhh
Q 039346 12 DGRLTKQELQDAFKSLGSTFPAWRAWRALRHA 43 (71)
Q Consensus 12 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 43 (71)
++.++.+++...++.-+...+...+-..++.+
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L 45 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELL 45 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 57889999998887766666665554444443
No 251
>PF05338 DUF717: Protein of unknown function (DUF717); InterPro: IPR008002 This entry is represented by the Human herpesvirus 8, Orf30 protein; it is a family of uncharacterised viral proteins.
Probab=23.74 E-value=80 Score=13.55 Aligned_cols=19 Identities=16% Similarity=0.550 Sum_probs=14.2
Q ss_pred ccHHHHHHHHHhhCCCCcH
Q 039346 15 LTKQELQDAFKSLGSTFPA 33 (71)
Q Consensus 15 i~~~el~~~l~~~~~~~~~ 33 (71)
++.++|..++..+..++++
T Consensus 2 lse~Df~eC~~FF~rPlp~ 20 (55)
T PF05338_consen 2 LSENDFEECLKFFSRPLPE 20 (55)
T ss_pred CcHHHHHHHHHHHcCcHHH
Confidence 5677888888887776653
No 252
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=23.72 E-value=1.8e+02 Score=17.51 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=34.8
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHhhcC---CCCCeeeHHHHHHHHHHHHH
Q 039346 18 QELQDAFKSLGSTFPAWRAWRALRHADA---NGDGCINEDELRELVKYVIK 65 (71)
Q Consensus 18 ~el~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~ef~~~~~~~~~ 65 (71)
.-+...+..+|..++.+++..++..+.. .....++-+|+..++.....
T Consensus 323 ~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~~~~~~~ 373 (378)
T PRK11858 323 HALKNKLKEYGIELSREELCELLEKVKELSERKKRSLTDEELKELVEDVRR 373 (378)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 4466777888998888887777755532 34468999999998876553
No 253
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=23.50 E-value=1.9e+02 Score=17.72 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=30.1
Q ss_pred HhhhhccCCCcccHHHHHHHHHhhCCCC-------cHH----HHHHHHHhhcCCCCCeee
Q 039346 4 LRRYDTDGDGRLTKQELQDAFKSLGSTF-------PAW----RAWRALRHADANGDGCIN 52 (71)
Q Consensus 4 f~~~d~~~~g~i~~~el~~~l~~~~~~~-------~~~----~~~~~~~~~~~~~~~~i~ 52 (71)
|..+|.+....++.++-..++..++... +.. ++..++..++..+...|.
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVV 222 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVV 222 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEE
Confidence 3334445567999999999999876543 222 445566666655444443
No 254
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=23.28 E-value=78 Score=13.25 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=16.8
Q ss_pred CCCcccHHHHHHHHHhhCCCCcHHHHHHH
Q 039346 11 GDGRLTKQELQDAFKSLGSTFPAWRAWRA 39 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~ 39 (71)
.+|.++.+|+..=+.......+..++..+
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l 48 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDAL 48 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 46788888877666554443444444433
No 255
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=23.16 E-value=92 Score=14.05 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=19.4
Q ss_pred cHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHH
Q 039346 16 TKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELV 60 (71)
Q Consensus 16 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 60 (71)
+.++++.-+...-...+..++..+=+..-. .| ++.++...+|
T Consensus 14 ~~e~vk~~F~~~~~~Vs~~EI~~~Eq~Li~--eG-~~~eeiq~LC 55 (71)
T PF04282_consen 14 DPEEVKEEFKKLFSDVSASEISAAEQELIQ--EG-MPVEEIQKLC 55 (71)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--cC-CCHHHHHHHh
Confidence 445555555544444444544444333322 22 6666554444
No 256
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=23.12 E-value=28 Score=18.95 Aligned_cols=17 Identities=24% Similarity=0.175 Sum_probs=0.0
Q ss_pred CeeeHHHHHHHHHHHHH
Q 039346 49 GCINEDELRELVKYVIK 65 (71)
Q Consensus 49 ~~i~~~ef~~~~~~~~~ 65 (71)
|-+.|.+|+.++++|.=
T Consensus 186 GD~PW~~F~~~vkRl~I 202 (215)
T PF02309_consen 186 GDVPWEEFVKSVKRLRI 202 (215)
T ss_dssp -----------------
T ss_pred cCCCHHHHHHHhhccEE
Confidence 55789999999988763
No 257
>PF14178 YppF: YppF-like protein
Probab=22.69 E-value=88 Score=13.68 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=14.2
Q ss_pred CeeeHHHHHHHHHHHHHhc
Q 039346 49 GCINEDELRELVKYVIKRG 67 (71)
Q Consensus 49 ~~i~~~ef~~~~~~~~~~~ 67 (71)
|.|+..+|..+++.+-+-+
T Consensus 35 gei~i~eYR~lvreLE~~G 53 (60)
T PF14178_consen 35 GEISINEYRNLVRELEANG 53 (60)
T ss_pred CcccHHHHHHHHHHHHHhC
Confidence 6688888888888766543
No 258
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=22.35 E-value=86 Score=13.45 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=16.2
Q ss_pred CCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhc
Q 039346 12 DGRLTKQELQDAFKSLGSTFPAWRAWRALRHAD 44 (71)
Q Consensus 12 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 44 (71)
+..++..++...+...|...+...+...+....
T Consensus 11 ~p~~s~~~i~~~l~~~~~~vS~~TI~r~L~~~g 43 (72)
T PF01498_consen 11 NPRISAREIAQELQEAGISVSKSTIRRRLREAG 43 (72)
T ss_dssp -----HHHHHHHT---T--S-HHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHccCCcCHHHHHHHHHHcC
Confidence 455888888877765588888888877776553
No 259
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=22.16 E-value=57 Score=12.68 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=12.0
Q ss_pred hccCCCcccHHHHHHHHHh
Q 039346 8 DTDGDGRLTKQELQDAFKS 26 (71)
Q Consensus 8 d~~~~g~i~~~el~~~l~~ 26 (71)
|-..++.++.+.|.+++-.
T Consensus 8 dit~~ntltkrgfykligc 26 (41)
T PF13121_consen 8 DITKDNTLTKRGFYKLIGC 26 (41)
T ss_pred eccCCCeeehhhHHHHHHH
Confidence 4445677777777666544
No 260
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=21.95 E-value=82 Score=14.25 Aligned_cols=9 Identities=33% Similarity=0.726 Sum_probs=4.3
Q ss_pred CcccHHHHH
Q 039346 13 GRLTKQELQ 21 (71)
Q Consensus 13 g~i~~~el~ 21 (71)
|.++++++.
T Consensus 59 Gtl~aE~~e 67 (71)
T PF10260_consen 59 GTLTAEQFE 67 (71)
T ss_pred CCCCHHHHH
Confidence 444544443
No 261
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=21.87 E-value=1e+02 Score=13.98 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=11.3
Q ss_pred CeeeHHHHHHHHHHHHHhc
Q 039346 49 GCINEDELRELVKYVIKRG 67 (71)
Q Consensus 49 ~~i~~~ef~~~~~~~~~~~ 67 (71)
-.|+.+||...+..+.+.+
T Consensus 22 ~~lT~~E~~~av~~L~~~G 40 (74)
T PF04444_consen 22 VDLTEDEWWAAVDFLNRVG 40 (74)
T ss_dssp CT--HHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhc
Confidence 3477888888777666543
No 262
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=21.83 E-value=83 Score=13.05 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=12.3
Q ss_pred HHhhhhccCCCcccHHHHHHHHH
Q 039346 3 WLRRYDTDGDGRLTKQELQDAFK 25 (71)
Q Consensus 3 ~f~~~d~~~~g~i~~~el~~~l~ 25 (71)
+|..+...+++.++.+|+...+.
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTST
T ss_pred cHHHHHHcCCCCCCHHHHHHHcC
Confidence 44555444456777777664333
No 263
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=21.54 E-value=1.3e+02 Score=20.79 Aligned_cols=54 Identities=7% Similarity=0.124 Sum_probs=32.4
Q ss_pred hccCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhc--CCCCCeeeHHHHHHHHHHH
Q 039346 8 DTDGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHAD--ANGDGCINEDELRELVKYV 63 (71)
Q Consensus 8 d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~ef~~~~~~~ 63 (71)
|......|+..+++..+..++...+... .+...+. ....+.++|++|..+...+
T Consensus 154 d~~~~~~isard~k~~l~qvn~k~~~~k--fl~e~~ted~~~k~dlsf~~f~~ly~~l 209 (1267)
T KOG1264|consen 154 DQTRENSISARDLKTILPQVNFKVSSAK--FLKEKFTEDGARKDDLSFEQFHLLYKKL 209 (1267)
T ss_pred cchhhhheeHHhhhcccccceEEechHH--HHHHHHhHhhhccccccHHHHHHHHHHH
Confidence 3334456788888877777665555442 2223332 2345679999988877654
No 264
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=21.51 E-value=2.3e+02 Score=18.04 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=31.7
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHhhcC--CCCCeeeHHHHHHHHHH
Q 039346 18 QELQDAFKSLGSTFPAWRAWRALRHADA--NGDGCINEDELRELVKY 62 (71)
Q Consensus 18 ~el~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~ef~~~~~~ 62 (71)
.-++..++.+|..++++++..++..+.. ...+.|+-+|+..++..
T Consensus 430 ~av~~~l~~lG~~~~~~~~~~l~~~vk~~a~~~~~l~~~el~~i~~~ 476 (503)
T PLN03228 430 HAVKDRLKELGYELDDEKLNEVFSRFRDLTKEKKRITDADLKALVVN 476 (503)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhc
Confidence 3456677788988888888887766533 12356888888887654
No 265
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=21.48 E-value=99 Score=13.80 Aligned_cols=13 Identities=15% Similarity=0.051 Sum_probs=6.4
Q ss_pred cccHHHHHHHHHh
Q 039346 14 RLTKQELQDAFKS 26 (71)
Q Consensus 14 ~i~~~el~~~l~~ 26 (71)
.-+..+|++.|..
T Consensus 6 f~~~~eLk~~L~~ 18 (76)
T PF07624_consen 6 FEGAAELKQYLAE 18 (76)
T ss_pred cCCHHHHHHHHHH
Confidence 4445555555543
No 266
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=21.41 E-value=1.1e+02 Score=14.16 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=15.2
Q ss_pred ccHHHHHHHHHhhCCCCcHHHHHH
Q 039346 15 LTKQELQDAFKSLGSTFPAWRAWR 38 (71)
Q Consensus 15 i~~~el~~~l~~~~~~~~~~~~~~ 38 (71)
++.+++..+.+.....+++.++..
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~ 26 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEK 26 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHH
Confidence 566777777666666666655433
No 267
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=21.23 E-value=1.1e+02 Score=14.20 Aligned_cols=21 Identities=14% Similarity=-0.100 Sum_probs=15.2
Q ss_pred CCCCCeeeHHHHHHHHHHHHH
Q 039346 45 ANGDGCINEDELRELVKYVIK 65 (71)
Q Consensus 45 ~~~~~~i~~~ef~~~~~~~~~ 65 (71)
--..+.||++||..+-....+
T Consensus 30 FVAPmSIS~eeY~~LH~~fN~ 50 (81)
T PF10891_consen 30 FVAPMSISFEEYIRLHIKFNE 50 (81)
T ss_pred eecccEeeHHHHHHHHHHHHH
Confidence 345688999999988765543
No 268
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=21.19 E-value=1.1e+02 Score=14.13 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=22.8
Q ss_pred cCCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhcCCCCCeeeHHHHHHHH
Q 039346 10 DGDGRLTKQELQDAFKSLGSTFPAWRAWRALRHADANGDGCINEDELRELV 60 (71)
Q Consensus 10 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 60 (71)
...|..+.+|++.+++. .......+..-.....+.+.+.+|...+
T Consensus 12 ~~~~lFt~~EI~~Ivkk------R~~fEy~L~rr~~~~~Dfl~YI~yE~~L 56 (83)
T PF08640_consen 12 ERKGLFTKEEIREIVKK------RRDFEYKLQRRGKKKSDFLRYIEYEMNL 56 (83)
T ss_pred HHhCCCCHHHHHHHHHH------HHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34577777788777765 1222233333333333445555544444
No 269
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=20.76 E-value=1.2e+02 Score=14.59 Aligned_cols=15 Identities=20% Similarity=0.609 Sum_probs=9.4
Q ss_pred CCcccHHHHHHHHHh
Q 039346 12 DGRLTKQELQDAFKS 26 (71)
Q Consensus 12 ~g~i~~~el~~~l~~ 26 (71)
+|.|+.+||..-+..
T Consensus 38 ~~~i~~EeF~~~Lq~ 52 (96)
T PF07531_consen 38 DGKIEAEEFTSKLQE 52 (96)
T ss_dssp TTSS-HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 467777777766655
No 270
>PRK00441 argR arginine repressor; Provisional
Probab=20.67 E-value=1.4e+02 Score=15.38 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=28.5
Q ss_pred CCCcccHHHHHHHHHhhCCCCcHHHHHHHHHhhc
Q 039346 11 GDGRLTKQELQDAFKSLGSTFPAWRAWRALRHAD 44 (71)
Q Consensus 11 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 44 (71)
..+..+-+|+...+..-|...++..++.-++.+.
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~ 48 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELK 48 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcC
Confidence 3578889999999988899999999888877664
No 271
>COG3860 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.64 E-value=1.2e+02 Score=14.31 Aligned_cols=19 Identities=0% Similarity=0.032 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhcCC
Q 039346 28 GSTFPAWRAWRALRHADAN 46 (71)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~ 46 (71)
+..+++.++..+++.+.+|
T Consensus 44 ~r~YsEkeVN~ii~ryh~D 62 (89)
T COG3860 44 ERQYSEKEVNLIIKRYHPD 62 (89)
T ss_pred ccccCHHHHHHHHHHhCch
Confidence 6678889999999888754
No 272
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=20.63 E-value=1.4e+02 Score=15.21 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=15.9
Q ss_pred CcccHHHHHHHHHhhCCCCcHHHHHHHHHh
Q 039346 13 GRLTKQELQDAFKSLGSTFPAWRAWRALRH 42 (71)
Q Consensus 13 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 42 (71)
+.++.+++...++.-+...+...+-..++.
T Consensus 35 ~~~sAeei~~~l~~~~p~islaTVYr~L~~ 64 (145)
T COG0735 35 GHLSAEELYEELREEGPGISLATVYRTLKL 64 (145)
T ss_pred CCCCHHHHHHHHHHhCCCCCHhHHHHHHHH
Confidence 336666666666665555554444333333
No 273
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=20.40 E-value=1e+02 Score=13.57 Aligned_cols=8 Identities=0% Similarity=-0.516 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 039346 33 AWRAWRAL 40 (71)
Q Consensus 33 ~~~~~~~~ 40 (71)
++-+..+|
T Consensus 62 ediLd~IF 69 (73)
T PF12631_consen 62 EDILDNIF 69 (73)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 274
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.39 E-value=75 Score=12.01 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhCCC
Q 039346 17 KQELQDAFKSLGST 30 (71)
Q Consensus 17 ~~el~~~l~~~~~~ 30 (71)
.++|+.+|..-|..
T Consensus 6 ~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 6 DSDLKSWLKSHGIP 19 (38)
T ss_pred HHHHHHHHHHcCCC
Confidence 35566666654443
No 275
>TIGR02267 Myxococcus xanthus paralogous family TIGR02267. This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=20.31 E-value=1.4e+02 Score=15.05 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=8.8
Q ss_pred eeHHHHHHHHHHHHHhccc
Q 039346 51 INEDELRELVKYVIKRGYA 69 (71)
Q Consensus 51 i~~~ef~~~~~~~~~~~~~ 69 (71)
++|+.+..+.+++.+.+.|
T Consensus 5 ~dW~pir~L~rRV~~~Gep 23 (123)
T TIGR02267 5 LDWDPIRELARRVLRLGEP 23 (123)
T ss_pred CCchHHHHHHHHHHhcCCC
Confidence 4444444444444444433
No 276
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=20.28 E-value=98 Score=14.26 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=7.8
Q ss_pred CCcccHHHHHHHH
Q 039346 12 DGRLTKQELQDAF 24 (71)
Q Consensus 12 ~g~i~~~el~~~l 24 (71)
.|.++.++|..+|
T Consensus 100 ~G~~~~~~l~~~L 112 (112)
T PF13098_consen 100 PGYLSPEELLKML 112 (112)
T ss_dssp ESS--HHHHHHHH
T ss_pred cCCCCHHHHHhhC
Confidence 3788888887654
No 277
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=20.14 E-value=47 Score=18.96 Aligned_cols=16 Identities=44% Similarity=0.962 Sum_probs=11.8
Q ss_pred HhhhhccCCCcccHHH
Q 039346 4 LRRYDTDGDGRLTKQE 19 (71)
Q Consensus 4 f~~~d~~~~g~i~~~e 19 (71)
|..+|.+++|.|+..+
T Consensus 92 f~~yD~dgDG~vd~~d 107 (286)
T TIGR03296 92 FDRYDLDGDGNFDEPD 107 (286)
T ss_pred cccccccCCCccCCCC
Confidence 5567888888887644
Done!