BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039348
(651 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 160/327 (48%), Gaps = 29/327 (8%)
Query: 26 EYDANALIIDGQRKVIISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRR 85
E N +++G+ V+ + IHYPR E W I+ K G + I Y+FWN HEP
Sbjct: 9 EVGKNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEG 68
Query: 86 EYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIF 145
YDF+G D F +L Q+ G Y I+R GPYVCAEW GG P WL I+LR + +
Sbjct: 69 RYDFAGQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQDPYY 128
Query: 146 KNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYG--NIMEKYGDAGKQYIKWCANM 203
+++F ++ A+L S+GG II Q+ENEYG I + Y + +K
Sbjct: 129 XERVKLFLNEVGKQL--ADLQISKGGNIIXVQVENEYGAFGIDKPYISEIRDXVKQAGFT 186
Query: 204 AVAQNISEPWIMCQ-----QSDAPEPMINTCN---GFYCDQ----FKPNNPKSPKMWTEN 251
V P C +++A + ++ T N G D+ K P +P +E
Sbjct: 187 GV------PLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEF 240
Query: 252 WTGWFKLWGGRDPQRTAEDLAFSVARFFQNGGVLNNYYMYHGGTNFGRTAGGPY-----I 306
W+GWF WG + R+AE+L + + Y HGGT+FG G +
Sbjct: 241 WSGWFDHWGAKHETRSAEELVKGXKEXLDR-NISFSLYXTHGGTSFGHWGGANFPNFSPT 299
Query: 307 ATSYDYNAPLDEYGNLNQPKWGHLKQL 333
TSYDY+AP++E G + PK+ ++ L
Sbjct: 300 CTSYDYDAPINESGKVT-PKYLEVRNL 325
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 155/309 (50%), Gaps = 27/309 (8%)
Query: 34 IDGQRKVIISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNL 93
+DG+ I+SG+IHY R PE W + K G + +ETY+ WN+HEP E+ F G+L
Sbjct: 12 LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71
Query: 94 DFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFT 153
D KF ++ QD GLYAI+R P++CAEW +GG P WL T +++R+ + + + +
Sbjct: 72 DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLL-TKNMRIRSSDPAYIEAVGRYY 130
Query: 154 TKIVNMCKEANLFASQGGPIILAQIENEYGNIMEK--YGDAGKQYIKWCANMAVAQNISE 211
+++ GG I++ Q+ENEYG+ E Y A +Q ++ C
Sbjct: 131 DQLLPRLVPRL--LDNGGNILMMQVENEYGSYGEDKAYLRAIRQLMEECGVTCPLFTSDG 188
Query: 212 PWIMCQQSDA--PEPMINTCN-------GFYCDQ--FKPNNPKSPKMWTENWTGWFKLWG 260
PW ++ E + T N F Q F + K P M E W GWF W
Sbjct: 189 PWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWDGWFNRWK 248
Query: 261 GRDPQRTAEDLAFSVARFFQNGGVLNNYYMYHGGTNFGRTAGG--------PYIATSYDY 312
R ++LA +V + G + N YM+HGGTNFG G P + TSYDY
Sbjct: 249 EPIITRDPKELADAVREVLEQGSI--NLYMFHGGTNFGFMNGCSARGTLDLPQV-TSYDY 305
Query: 313 NAPLDEYGN 321
+A LDE GN
Sbjct: 306 DALLDEEGN 314
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 154/322 (47%), Gaps = 28/322 (8%)
Query: 23 IKVEYDANALIIDGQRKVIISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEP 82
+++Y ++ + DGQ ISGSIHY R W D + K K GL+AI+TY+ WN HEP
Sbjct: 9 FEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEP 68
Query: 83 RRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDN 142
+Y FS + D F +L + GL ILR GPY+CAEW GG P WL I LR+ +
Sbjct: 69 WPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSD 128
Query: 143 DIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKQYIKWCAN 202
+ + + V + K L GGP+I Q+ENEYG+ Y Y+++
Sbjct: 129 PDYLAAVDKWLG--VLLPKMKPLLYQNGGPVITVQVENEYGS----YFACDFDYLRFLQK 182
Query: 203 MAVAQNISEPWIMCQQSDAPEPMIN--TCNGFY-----------CDQF---KPNNPKSPK 246
++ + ++ A + + G Y D F + PK P
Sbjct: 183 R-FRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPL 241
Query: 247 MWTENWTGWFKLWGGRDPQRTAEDLAFSVARFFQNGGVLNNYYMYHGGTNFG--RTAGGP 304
+ +E +TGW WG E +A S+ G + N YM+ GGTNF A P
Sbjct: 242 INSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGASV-NLYMFIGGTNFAYWNGANSP 300
Query: 305 YIA--TSYDYNAPLDEYGNLNQ 324
Y A TSYDY+APL E G+L +
Sbjct: 301 YAAQPTSYDYDAPLSEAGDLTE 322
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 118/414 (28%), Positives = 180/414 (43%), Gaps = 49/414 (11%)
Query: 25 VEYDANALIIDGQRKVIISGSIH-YPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPR 83
V +D +++ ++G+R +I SG +H Y ++ D+ +K K G + + Y+ W + E
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 84 RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDND 143
Y G D FF ++AG+Y + R GPY+ AE + GGFP WL GI LRT ++
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-LRTSDE 124
Query: 144 IFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKY-GDAGKQYIKWCAN 202
+ + + I +A + + GGPIIL Q ENEY Y G Y+++ +
Sbjct: 125 AYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIED 182
Query: 203 MAVAQNISEPWIM----CQQSDAPEPMINTCN---------GFYC--------------- 234
A I P+I +AP + GF C
Sbjct: 183 HARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYF 242
Query: 235 -DQFKPNNPKSPKMWTENWTGWFKLWGGRDPQRTAEDLAFSVAR-FFQN----GGVLNNY 288
+ +P +P E G F WGG + A L R F++N G N
Sbjct: 243 HTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNL 302
Query: 289 YMYHGGTNFGRTAGGPYIATSYDYNAPLDEYGNLNQPKWGHLKQLHASIKQAEKFLTN-- 346
YM GGTN+G G P TSYDY + + E N+ + K+ LK L K + +L
Sbjct: 303 YMIFGGTNWGNL-GHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLVANP 361
Query: 347 GTVETKSVMNFVDLTKFTL---NATGERFCMLSNSDNTGDYTADLGEDGKFFVP 397
G + T + N DLT L N++ F ++ +S DY++ + K VP
Sbjct: 362 GDLSTSTYTNTADLTVTPLLGSNSSASSFFVIRHS----DYSSQASVEYKLTVP 411
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 177/406 (43%), Gaps = 46/406 (11%)
Query: 25 VEYDANALIIDGQRKVIISGSIHYPR-STPEMWPDLIQKAKDGGLDAIETYIFWNVHEPR 83
V +D ++L + G+R VI SG +H R P ++ D+ K K G + + Y+ W + E +
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 84 RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDND 143
+ G FF+ AG+Y + R GPY+ AE + GGFP WL G +LRTD
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLRTDAP 144
Query: 144 IFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKQYIKWCANM 203
+ + + I ++ +A + + GGP+IL Q ENEY E K Y+++ +
Sbjct: 145 DYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQ 202
Query: 204 AVAQNISEPWI----MCQQSDAPEPMINTCN---------GFYCDQFK--PNN------- 241
A I P I + AP + + + GF C P+N
Sbjct: 203 ARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWR 262
Query: 242 -------PKSPKMWTENWTGWFKLWGGRDPQRTAEDLAFSVAR-FFQN----GGVLNNYY 289
P +P E G F +GG ++ + + R F++N G + N Y
Sbjct: 263 QDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIY 322
Query: 290 MYHGGTNFGRTAGGPYIATSYDYNAPLDEYGNLNQPKWGHLKQLHASIKQAEKFLT---- 345
M GGTN+G G P TSYDY A + E +++ K+ LK +K + ++T
Sbjct: 323 MTFGGTNWGNL-GHPGGYTSYDYGASIREDRRIDREKYSELKLQGQFLKVSPGYITATPE 381
Query: 346 NGTVETKSVMNFVDLTKFTLNATGERFCMLS---NSDNTGDYTADL 388
N T S + +T +G+ F + +S +T YT L
Sbjct: 382 NATQGVYSDSQNIVITPLLAKESGDFFVVRHANYSSTDTASYTVKL 427
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 319 YGNLNQPKWGHLKQLHASIKQAEKFLTNGTVETKSVMNFVD-LTKFTLNATGERFCMLSN 377
YG +N+P L+ + AEKF G + V+ FVD + ++TL T E +L
Sbjct: 206 YGQMNEPPGNRLRVALTGLTMAEKFRDEG----RDVLLFVDNIYRYTLAGT-EVSALLGR 260
Query: 378 SDNTGDYTADLGED 391
+ Y L E+
Sbjct: 261 MPSAVGYQPTLAEE 274
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 58 DLIQKAKDGGLDAIETYIFWNVHEPR-RREYDFSGNLDFVKFFKLVQDAGL 107
D +++ K GG D + ++W + E + ++YD+S + + F+LV+ GL
Sbjct: 38 DELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSA---YRELFQLVKKCGL 85
>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
Caulobacter Crescentus Cb15
Length = 552
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 58/299 (19%), Positives = 110/299 (36%), Gaps = 65/299 (21%)
Query: 2 ASSRTEFVLVAGLAMLCSCLAIK-------------VEYDA-NALIIDGQRKVIISGSIH 47
A + F GLA+ C + V D +AL +DG + ++ ++
Sbjct: 7 AXGXSRFATAVGLALALVCGPLASGAHAADAAXPQLVTKDGRHALXVDGAPFLXLAAQVN 66
Query: 48 ----YPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQ 103
+P ++WP I+K G + ++ I W EP ++DFS LD + + +
Sbjct: 67 NSSAWPSQXAKVWP-AIEKV---GANTVQVPIAWEQIEPVEGQFDFS-YLDLL--LEQAR 119
Query: 104 DAGLYAIL-------RIGPYVCAEW---NYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFT 153
+ + +L P EW + FP + + G + + + + K+ +
Sbjct: 120 ERKVRLVLLWFGTWKNSSPSYAPEWVKLDDKRFPRLIKDD-GERSYSXSPLAKSTLDADR 178
Query: 154 TKIVNMCKEANLFASQGGPIILAQIENE---YGNIMEKYGDAGKQYIKWCANMAVAQNI- 209
V + + +I Q+ENE YG++ + +G A ++ A + + +
Sbjct: 179 KAFVALXTHLKAKDAAQKTVIXVQVENETGTYGSVRD-FGPAAQKVFNGPAPATLVKAVG 237
Query: 210 SEP--WIMCQQSDAPE----------------------PMINTCNGFYCDQFKPNNPKS 244
++P W DA E P+ N D KP +PK+
Sbjct: 238 AKPGTWSQAFGKDADEFFHAWHIGRFVDQVAAGGKAVYPLPXYVNAALRDPIKPGDPKT 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,072,439
Number of Sequences: 62578
Number of extensions: 946728
Number of successful extensions: 2037
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2010
Number of HSP's gapped (non-prelim): 19
length of query: 651
length of database: 14,973,337
effective HSP length: 105
effective length of query: 546
effective length of database: 8,402,647
effective search space: 4587845262
effective search space used: 4587845262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)