Query 039348
Match_columns 651
No_of_seqs 370 out of 1447
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 3E-169 7E-174 1438.1 58.0 620 8-651 9-639 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 2E-141 4E-146 1169.9 34.9 556 20-651 15-576 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.7E-90 3.7E-95 734.4 20.0 297 31-336 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 3.2E-36 7E-41 341.5 9.9 289 25-323 1-333 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.9 3.7E-22 7.9E-27 216.4 13.6 264 46-339 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.3 1.2E-10 2.5E-15 122.8 19.3 192 25-257 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.1 6.2E-09 1.4E-13 120.2 24.7 159 23-216 276-448 (604)
8 PRK09525 lacZ beta-D-galactosi 99.0 5.9E-09 1.3E-13 126.5 19.5 149 23-216 334-488 (1027)
9 PF02837 Glyco_hydro_2_N: Glyc 99.0 1.9E-09 4.1E-14 103.6 11.2 104 470-585 59-165 (167)
10 PF00150 Cellulase: Cellulase 98.9 1.5E-08 3.1E-13 104.1 14.6 161 35-217 4-172 (281)
11 PRK10340 ebgA cryptic beta-D-g 98.9 3.1E-08 6.7E-13 120.5 17.7 260 23-338 318-603 (1021)
12 COG3250 LacZ Beta-galactosidas 98.8 6.5E-08 1.4E-12 114.2 17.0 135 23-204 284-424 (808)
13 PF13364 BetaGal_dom4_5: Beta- 98.7 6.1E-08 1.3E-12 88.5 9.4 85 466-562 22-110 (111)
14 PRK10150 beta-D-glucuronidase; 98.4 2.9E-06 6.3E-11 98.2 14.0 129 475-617 61-225 (604)
15 PRK09525 lacZ beta-D-galactosi 98.3 6.9E-06 1.5E-10 100.3 14.1 126 479-616 120-266 (1027)
16 smart00633 Glyco_10 Glycosyl h 98.2 4.7E-06 1E-10 86.3 9.1 117 77-218 3-126 (254)
17 PF03198 Glyco_hydro_72: Gluca 98.2 2.3E-05 5E-10 83.1 13.9 158 19-214 5-180 (314)
18 PRK10340 ebgA cryptic beta-D-g 98.1 7.2E-06 1.6E-10 100.2 10.5 99 479-591 109-211 (1021)
19 TIGR03356 BGL beta-galactosida 97.9 1.2E-05 2.5E-10 89.7 5.8 97 54-162 54-151 (427)
20 PLN02705 beta-amylase 97.9 4.1E-05 8.9E-10 86.5 8.7 81 53-137 267-357 (681)
21 PLN00197 beta-amylase; Provisi 97.8 4.2E-05 9.2E-10 85.8 8.4 82 52-137 125-216 (573)
22 PLN02905 beta-amylase 97.8 5.4E-05 1.2E-09 85.8 9.1 112 55-178 287-432 (702)
23 PLN02803 beta-amylase 97.8 5.9E-05 1.3E-09 84.5 8.7 80 54-137 107-196 (548)
24 PLN02801 beta-amylase 97.8 6.2E-05 1.3E-09 83.9 8.8 82 52-137 35-126 (517)
25 PLN02161 beta-amylase 97.7 0.00015 3.4E-09 80.8 9.3 81 54-138 117-207 (531)
26 PF13204 DUF4038: Protein of u 97.6 0.00031 6.8E-09 74.5 10.1 225 29-283 2-274 (289)
27 KOG2024 Beta-Glucuronidase GUS 97.5 0.00037 8.1E-09 72.0 8.4 130 474-617 83-228 (297)
28 PF01373 Glyco_hydro_14: Glyco 97.3 0.00028 6.1E-09 77.3 5.5 113 56-178 18-152 (402)
29 PF00331 Glyco_hydro_10: Glyco 97.3 0.00045 9.8E-09 74.2 7.0 158 41-219 11-180 (320)
30 PF07745 Glyco_hydro_53: Glyco 97.1 0.0018 4E-08 70.0 9.2 137 57-212 27-171 (332)
31 COG3693 XynA Beta-1,4-xylanase 97.1 0.003 6.6E-08 67.3 10.1 133 63-218 55-194 (345)
32 PF00232 Glyco_hydro_1: Glycos 97.0 0.00025 5.4E-09 79.7 1.6 97 54-162 58-156 (455)
33 PF02055 Glyco_hydro_30: O-Gly 97.0 0.019 4E-07 65.5 16.5 335 37-402 74-491 (496)
34 COG2730 BglC Endoglucanase [Ca 96.8 0.0043 9.4E-08 68.9 9.1 115 52-184 66-193 (407)
35 PRK15014 6-phospho-beta-glucos 96.8 0.0016 3.4E-08 73.9 5.5 95 55-161 70-167 (477)
36 PRK09852 cryptic 6-phospho-bet 96.7 0.0015 3.3E-08 73.8 5.0 96 54-161 71-169 (474)
37 PLN02998 beta-glucosidase 96.6 0.0023 5E-08 72.8 4.9 100 54-161 82-183 (497)
38 PF14488 DUF4434: Domain of un 96.5 0.031 6.7E-07 54.8 11.8 134 49-213 15-157 (166)
39 PRK13511 6-phospho-beta-galact 96.5 0.0033 7.2E-08 71.1 5.5 99 54-161 54-153 (469)
40 PRK09593 arb 6-phospho-beta-gl 96.5 0.0038 8.2E-08 70.8 5.9 100 54-161 73-175 (478)
41 PLN02814 beta-glucosidase 96.4 0.0035 7.6E-08 71.5 4.9 100 54-161 77-178 (504)
42 PRK09589 celA 6-phospho-beta-g 96.4 0.004 8.8E-08 70.5 5.3 100 54-161 67-169 (476)
43 TIGR01233 lacG 6-phospho-beta- 96.4 0.0047 1E-07 69.9 5.7 96 54-161 53-149 (467)
44 PLN02849 beta-glucosidase 96.2 0.0064 1.4E-07 69.4 5.4 100 54-161 79-180 (503)
45 COG3867 Arabinogalactan endo-1 96.0 0.038 8.1E-07 58.5 9.8 117 56-190 65-190 (403)
46 PF14871 GHL6: Hypothetical gl 95.4 0.077 1.7E-06 50.2 8.7 98 58-160 4-123 (132)
47 smart00812 Alpha_L_fucos Alpha 95.3 6.2 0.00014 43.9 24.4 251 48-350 78-343 (384)
48 COG2723 BglB Beta-glucosidase/ 95.1 0.031 6.7E-07 62.7 5.6 100 54-161 59-161 (460)
49 PLN02447 1,4-alpha-glucan-bran 94.0 19 0.00041 43.5 26.5 59 54-113 251-320 (758)
50 TIGR01515 branching_enzym alph 92.7 2.4 5.3E-05 49.8 15.4 69 45-113 143-226 (613)
51 COG3250 LacZ Beta-galactosidas 92.6 0.59 1.3E-05 56.4 10.3 116 462-591 45-184 (808)
52 TIGR00542 hxl6Piso_put hexulos 92.3 2.6 5.6E-05 44.0 13.6 131 53-211 15-149 (279)
53 PF02638 DUF187: Glycosyl hydr 92.3 0.5 1.1E-05 50.9 8.4 118 52-180 17-162 (311)
54 KOG0496 Beta-galactosidase [Ca 91.8 2 4.4E-05 50.1 12.9 73 479-564 557-630 (649)
55 KOG2230 Predicted beta-mannosi 91.7 1.4 3.1E-05 50.5 11.1 150 29-218 327-494 (867)
56 smart00642 Aamy Alpha-amylase 91.6 0.48 1E-05 46.4 6.7 60 56-115 21-92 (166)
57 PRK13210 putative L-xylulose 5 90.9 2.7 5.9E-05 43.5 11.9 131 54-211 16-149 (284)
58 PF10435 BetaGal_dom2: Beta-ga 90.7 0.62 1.3E-05 46.5 6.6 60 359-418 21-99 (183)
59 PRK14706 glycogen branching en 89.9 5.4 0.00012 47.3 14.4 51 60-113 174-237 (639)
60 PRK05402 glycogen branching en 89.5 3.9 8.5E-05 49.1 13.1 54 60-113 272-335 (726)
61 PRK09936 hypothetical protein; 89.3 0.78 1.7E-05 48.8 6.3 58 49-112 33-91 (296)
62 COG1649 Uncharacterized protei 88.9 1.2 2.7E-05 49.7 7.7 122 52-183 62-210 (418)
63 PRK12568 glycogen branching en 88.5 7.5 0.00016 46.7 14.3 55 58-115 274-341 (730)
64 PF01261 AP_endonuc_2: Xylose 88.4 1.6 3.5E-05 42.3 7.5 124 60-211 1-128 (213)
65 PRK13209 L-xylulose 5-phosphat 87.9 5.5 0.00012 41.4 11.6 125 55-211 22-154 (283)
66 COG3934 Endo-beta-mannanase [C 87.7 0.4 8.6E-06 53.9 3.0 156 32-205 4-168 (587)
67 cd00019 AP2Ec AP endonuclease 87.3 6.1 0.00013 41.1 11.5 97 54-179 10-107 (279)
68 PRK01060 endonuclease IV; Prov 86.9 15 0.00033 38.1 14.1 93 56-177 14-109 (281)
69 PRK14705 glycogen branching en 86.6 12 0.00026 47.5 15.0 56 58-113 770-835 (1224)
70 PRK09441 cytoplasmic alpha-amy 86.4 1.2 2.5E-05 50.7 5.9 61 53-113 18-101 (479)
71 PF05913 DUF871: Bacterial pro 86.1 1.2 2.6E-05 49.0 5.6 73 42-120 2-74 (357)
72 PF14307 Glyco_tran_WbsX: Glyc 85.5 8.5 0.00018 42.0 11.8 138 51-217 55-197 (345)
73 PF01229 Glyco_hydro_39: Glyco 85.2 2.5 5.5E-05 48.2 7.8 68 44-114 29-105 (486)
74 TIGR02631 xylA_Arthro xylose i 85.0 18 0.0004 40.2 14.2 138 52-215 30-178 (382)
75 PF13200 DUF4015: Putative gly 84.4 3.3 7.2E-05 44.9 7.9 149 52-211 11-190 (316)
76 PF00128 Alpha-amylase: Alpha 83.4 1.3 2.8E-05 45.6 4.2 57 57-113 7-72 (316)
77 TIGR01531 glyc_debranch glycog 83.2 4.4 9.5E-05 51.4 9.2 113 31-149 104-236 (1464)
78 TIGR03234 OH-pyruv-isom hydrox 82.3 20 0.00043 36.7 12.4 43 55-111 15-57 (254)
79 PRK09856 fructoselysine 3-epim 81.2 27 0.00058 36.1 13.0 131 54-211 13-145 (275)
80 PRK09997 hydroxypyruvate isome 80.4 26 0.00056 36.1 12.5 42 56-111 17-58 (258)
81 TIGR02402 trehalose_TreZ malto 79.0 3.5 7.7E-05 47.8 6.1 53 58-113 115-180 (542)
82 PLN00196 alpha-amylase; Provis 78.9 13 0.00028 42.0 10.3 57 57-113 47-112 (428)
83 PRK12313 glycogen branching en 78.7 3.9 8.4E-05 48.2 6.4 52 59-113 176-240 (633)
84 PF08308 PEGA: PEGA domain; I 78.0 4.3 9.4E-05 33.5 4.8 23 497-519 2-24 (71)
85 PRK09989 hypothetical protein; 77.6 25 0.00055 36.2 11.4 43 55-111 16-58 (258)
86 PF08531 Bac_rhamnosid_N: Alph 77.2 6 0.00013 38.8 6.3 63 495-560 4-66 (172)
87 COG3623 SgaU Putative L-xylulo 77.0 27 0.00059 36.5 10.9 124 54-210 18-150 (287)
88 PLN02960 alpha-amylase 75.7 5.6 0.00012 48.4 6.6 57 57-113 420-486 (897)
89 TIGR02104 pulA_typeI pullulana 75.5 4.5 9.8E-05 47.5 5.7 55 58-113 168-249 (605)
90 PRK10785 maltodextrin glucosid 75.1 5.6 0.00012 46.7 6.4 56 57-112 182-245 (598)
91 cd06595 GH31_xylosidase_XylS-l 75.0 29 0.00062 36.9 11.2 70 46-115 14-96 (292)
92 PF14587 Glyco_hydr_30_2: O-Gl 74.9 31 0.00067 38.5 11.5 122 82-218 93-227 (384)
93 cd06593 GH31_xylosidase_YicI Y 74.6 5.4 0.00012 42.5 5.7 68 52-119 22-92 (308)
94 PF02679 ComA: (2R)-phospho-3- 74.4 5.8 0.00013 41.5 5.6 52 53-114 83-134 (244)
95 TIGR02456 treS_nterm trehalose 73.7 6.9 0.00015 45.3 6.6 58 55-112 29-95 (539)
96 TIGR02403 trehalose_treC alpha 73.0 5.5 0.00012 46.2 5.6 58 56-113 29-95 (543)
97 COG0296 GlgB 1,4-alpha-glucan 72.7 8.6 0.00019 45.3 7.0 70 38-112 144-233 (628)
98 smart00518 AP2Ec AP endonuclea 72.5 66 0.0014 33.2 13.0 92 56-177 12-104 (273)
99 PRK09505 malS alpha-amylase; R 72.0 7.4 0.00016 46.5 6.4 58 56-113 232-312 (683)
100 PF13199 Glyco_hydro_66: Glyco 71.9 68 0.0015 37.6 14.0 79 54-132 118-211 (559)
101 PF01120 Alpha_L_fucos: Alpha- 71.8 1.6E+02 0.0034 32.2 17.2 238 58-344 95-344 (346)
102 KOG0626 Beta-glucosidase, lact 71.1 8.2 0.00018 44.4 6.2 113 55-177 92-208 (524)
103 PF06832 BiPBP_C: Penicillin-B 70.6 9 0.00019 33.2 5.1 50 495-561 32-82 (89)
104 TIGR00677 fadh2_euk methylenet 70.2 16 0.00036 38.8 8.0 108 40-162 130-251 (281)
105 PF01791 DeoC: DeoC/LacD famil 69.3 2 4.3E-05 44.1 0.8 53 57-112 79-131 (236)
106 cd04908 ACT_Bt0572_1 N-termina 68.3 15 0.00033 29.7 5.8 55 53-111 12-66 (66)
107 PF08533 Glyco_hydro_42C: Beta 67.8 8.7 0.00019 30.8 4.1 35 369-404 11-56 (58)
108 PRK12677 xylose isomerase; Pro 67.8 1.3E+02 0.0028 33.5 14.7 89 55-161 32-124 (384)
109 PRK10933 trehalose-6-phosphate 67.5 12 0.00025 43.7 6.7 55 56-113 35-101 (551)
110 PRK13398 3-deoxy-7-phosphohept 67.4 17 0.00038 38.4 7.4 75 31-113 20-98 (266)
111 PF02065 Melibiase: Melibiase; 66.8 39 0.00085 37.8 10.3 89 47-135 51-148 (394)
112 PLN02361 alpha-amylase 65.7 14 0.0003 41.5 6.5 57 57-113 32-96 (401)
113 TIGR03849 arch_ComA phosphosul 65.4 12 0.00026 39.0 5.5 52 54-115 71-122 (237)
114 cd06545 GH18_3CO4_chitinase Th 64.1 36 0.00079 35.1 8.9 97 84-209 36-133 (253)
115 cd06568 GH20_SpHex_like A subg 63.5 57 0.0012 35.5 10.7 59 52-113 16-95 (329)
116 COG3589 Uncharacterized conser 62.4 15 0.00032 40.2 5.7 72 42-120 4-76 (360)
117 TIGR02103 pullul_strch alpha-1 62.0 14 0.00031 45.4 6.2 21 93-113 404-424 (898)
118 cd06592 GH31_glucosidase_KIAA1 60.9 22 0.00047 38.1 6.8 68 49-119 25-96 (303)
119 PRK14510 putative bifunctional 60.1 14 0.0003 47.1 5.9 56 58-113 191-267 (1221)
120 TIGR02100 glgX_debranch glycog 60.0 14 0.00031 44.2 5.7 55 59-113 189-265 (688)
121 PF03659 Glyco_hydro_71: Glyco 58.3 34 0.00075 38.1 8.0 54 51-113 14-67 (386)
122 COG1306 Uncharacterized conser 58.2 22 0.00048 38.3 6.0 62 52-113 75-144 (400)
123 PF01261 AP_endonuc_2: Xylose 58.1 82 0.0018 30.3 9.9 103 55-185 28-137 (213)
124 cd06591 GH31_xylosidase_XylS X 57.9 17 0.00036 39.2 5.3 65 52-117 22-90 (319)
125 TIGR02401 trehalose_TreY malto 56.8 24 0.00052 43.0 6.8 64 52-115 14-87 (825)
126 cd06589 GH31 The enzymes of gl 56.8 32 0.00069 35.9 7.1 65 52-117 22-90 (265)
127 TIGR02102 pullulan_Gpos pullul 56.4 19 0.00041 45.4 6.0 21 93-113 555-575 (1111)
128 PRK03705 glycogen debranching 55.3 21 0.00045 42.6 6.0 55 59-113 184-262 (658)
129 PRK14507 putative bifunctional 55.3 24 0.00052 46.2 6.9 60 52-115 756-829 (1693)
130 PLN02877 alpha-amylase/limit d 55.1 23 0.0005 43.9 6.4 21 93-113 466-486 (970)
131 cd06602 GH31_MGAM_SI_GAA This 53.7 23 0.0005 38.6 5.6 74 46-120 13-93 (339)
132 PRK14511 maltooligosyl trehalo 53.6 29 0.00064 42.6 6.9 64 52-115 18-91 (879)
133 cd06598 GH31_transferase_CtsZ 52.6 25 0.00053 37.9 5.5 67 52-118 22-95 (317)
134 PRK14582 pgaB outer membrane N 51.3 64 0.0014 38.6 9.1 110 54-182 334-468 (671)
135 cd06603 GH31_GANC_GANAB_alpha 51.1 26 0.00056 38.1 5.5 74 46-120 13-91 (339)
136 PRK00042 tpiA triosephosphate 50.2 28 0.0006 36.6 5.3 50 59-114 78-127 (250)
137 cd06600 GH31_MGAM-like This fa 49.0 28 0.00061 37.5 5.3 73 46-119 13-90 (317)
138 cd06599 GH31_glycosidase_Aec37 48.9 36 0.00077 36.7 6.1 65 54-118 29-98 (317)
139 cd00311 TIM Triosephosphate is 48.8 36 0.00078 35.5 5.9 50 59-114 76-125 (242)
140 cd06416 GH25_Lys1-like Lys-1 i 48.7 39 0.00085 33.5 5.9 88 43-133 55-157 (196)
141 PRK09875 putative hydrolase; P 47.7 1.1E+02 0.0024 32.9 9.5 89 24-132 7-95 (292)
142 PRK08673 3-deoxy-7-phosphohept 47.0 51 0.0011 36.2 6.8 76 31-113 86-164 (335)
143 PF11324 DUF3126: Protein of u 46.8 62 0.0013 27.1 5.7 27 497-523 16-45 (63)
144 PF01055 Glyco_hydro_31: Glyco 46.5 31 0.00067 38.5 5.4 70 52-122 41-112 (441)
145 cd06547 GH85_ENGase Endo-beta- 46.5 47 0.001 36.4 6.6 115 70-215 32-148 (339)
146 PF07691 PA14: PA14 domain; I 46.2 1.6E+02 0.0035 26.9 9.3 74 481-561 48-122 (145)
147 PF03170 BcsB: Bacterial cellu 44.9 69 0.0015 37.6 8.1 48 505-558 62-109 (605)
148 cd06601 GH31_lyase_GLase GLase 44.6 1.2E+02 0.0026 33.1 9.4 72 46-118 13-89 (332)
149 PF12876 Cellulase-like: Sugar 44.5 38 0.00081 29.4 4.5 47 169-215 7-62 (88)
150 TIGR00419 tim triosephosphate 44.1 46 0.00099 33.9 5.6 45 59-113 73-117 (205)
151 cd06565 GH20_GcnA-like Glycosy 44.0 1.1E+02 0.0023 32.8 8.8 59 52-113 15-80 (301)
152 cd06604 GH31_glucosidase_II_Ma 43.8 42 0.00091 36.4 5.7 73 46-119 13-90 (339)
153 cd06562 GH20_HexA_HexB-like Be 43.7 2.1E+02 0.0046 31.3 11.1 58 52-112 16-89 (348)
154 KOG1412 Aspartate aminotransfe 43.4 76 0.0016 34.7 7.2 116 52-217 131-249 (410)
155 PRK14566 triosephosphate isome 41.8 70 0.0015 33.9 6.7 50 59-114 87-136 (260)
156 cd06597 GH31_transferase_CtsY 41.8 50 0.0011 36.1 5.9 73 46-118 13-110 (340)
157 cd06563 GH20_chitobiase-like T 41.2 1.1E+02 0.0023 33.7 8.3 59 52-113 16-106 (357)
158 COG1523 PulA Type II secretory 40.7 42 0.00091 40.3 5.4 55 59-113 205-285 (697)
159 PF14701 hDGE_amylase: glucano 40.7 1.4E+02 0.0031 33.8 9.3 110 46-161 12-143 (423)
160 TIGR00676 fadh2 5,10-methylene 40.7 1E+02 0.0023 32.4 7.9 109 39-162 125-247 (272)
161 TIGR02455 TreS_stutzeri trehal 40.6 62 0.0013 38.6 6.6 71 60-130 80-175 (688)
162 PF04914 DltD_C: DltD C-termin 40.5 22 0.00048 33.7 2.5 53 93-163 36-88 (130)
163 PRK09856 fructoselysine 3-epim 40.2 36 0.00077 35.2 4.3 55 55-113 91-149 (275)
164 PRK12858 tagatose 1,6-diphosph 39.0 36 0.00079 37.3 4.2 62 50-113 102-163 (340)
165 PRK15492 triosephosphate isome 38.9 62 0.0013 34.2 5.8 50 59-114 86-135 (260)
166 PF10566 Glyco_hydro_97: Glyco 38.2 1.6E+02 0.0035 31.4 8.8 115 52-174 30-160 (273)
167 COG0366 AmyA Glycosidases [Car 38.0 43 0.00093 37.4 4.8 56 58-113 33-97 (505)
168 KOG2230 Predicted beta-mannosi 37.7 94 0.002 36.5 7.2 64 483-559 80-145 (867)
169 TIGR00433 bioB biotin syntheta 37.1 54 0.0012 34.4 5.1 53 57-112 123-177 (296)
170 smart00854 PGA_cap Bacterial c 36.8 4.4E+02 0.0095 26.9 11.6 45 57-110 63-107 (239)
171 PF02228 Gag_p19: Major core p 36.8 16 0.00034 31.8 0.8 37 52-105 20-56 (92)
172 PRK14565 triosephosphate isome 36.6 62 0.0013 33.8 5.3 50 59-114 77-126 (237)
173 PLN02561 triosephosphate isome 36.1 72 0.0016 33.6 5.7 50 59-114 80-129 (253)
174 cd02742 GH20_hexosaminidase Be 35.9 66 0.0014 34.4 5.6 58 52-112 14-91 (303)
175 PRK08645 bifunctional homocyst 35.8 1.2E+02 0.0027 35.8 8.3 109 37-161 461-578 (612)
176 PF11008 DUF2846: Protein of u 35.7 65 0.0014 29.4 4.8 36 505-556 40-75 (117)
177 COG1735 Php Predicted metal-de 35.6 1.7E+02 0.0037 31.9 8.4 121 58-217 52-172 (316)
178 cd01299 Met_dep_hydrolase_A Me 35.1 74 0.0016 33.8 5.9 59 52-113 118-180 (342)
179 PLN02429 triosephosphate isome 34.8 65 0.0014 35.1 5.3 46 59-114 139-188 (315)
180 PRK14567 triosephosphate isome 34.7 80 0.0017 33.3 5.8 50 59-114 77-126 (253)
181 cd06418 GH25_BacA-like BacA is 34.6 1.8E+02 0.0038 29.8 8.2 91 52-164 50-141 (212)
182 PTZ00333 triosephosphate isome 34.3 83 0.0018 33.2 5.9 50 59-114 81-130 (255)
183 PRK13210 putative L-xylulose 5 34.3 55 0.0012 33.8 4.6 60 54-114 94-154 (284)
184 cd00537 MTHFR Methylenetetrahy 34.1 1.2E+02 0.0025 31.9 7.0 89 59-162 152-250 (274)
185 PRK12331 oxaloacetate decarbox 33.4 88 0.0019 35.7 6.3 56 46-113 88-143 (448)
186 KOG0259 Tyrosine aminotransfer 33.0 47 0.001 37.1 3.9 89 20-112 148-238 (447)
187 smart00481 POLIIIAc DNA polyme 32.8 1.6E+02 0.0035 23.7 6.2 45 55-112 16-60 (67)
188 PRK13209 L-xylulose 5-phosphat 32.7 2.6E+02 0.0057 28.9 9.4 104 51-183 54-161 (283)
189 PF03422 CBM_6: Carbohydrate b 32.6 3.7E+02 0.0079 24.1 9.8 75 478-559 31-110 (125)
190 COG0149 TpiA Triosephosphate i 32.2 90 0.002 32.9 5.7 50 59-114 80-129 (251)
191 PLN02784 alpha-amylase 32.0 96 0.0021 38.2 6.5 57 57-113 524-588 (894)
192 PRK10076 pyruvate formate lyas 31.9 1.8E+02 0.0038 29.7 7.7 125 54-211 54-209 (213)
193 PTZ00372 endonuclease 4-like p 31.9 8E+02 0.017 27.9 13.4 90 57-178 144-239 (413)
194 TIGR00587 nfo apurinic endonuc 31.8 3.2E+02 0.0069 28.6 9.9 83 57-161 14-98 (274)
195 COG1082 IolE Sugar phosphate i 31.5 5.7E+02 0.012 25.9 12.5 129 52-214 13-145 (274)
196 PRK09997 hydroxypyruvate isome 31.5 62 0.0013 33.3 4.4 60 54-113 85-144 (258)
197 cd04882 ACT_Bt0572_2 C-termina 31.2 90 0.002 24.4 4.4 55 53-109 10-64 (65)
198 cd06570 GH20_chitobiase-like_1 31.1 1.9E+02 0.0041 31.3 8.1 60 51-113 15-88 (311)
199 PF08306 Glyco_hydro_98M: Glyc 30.5 42 0.0009 36.5 2.9 89 40-153 104-200 (324)
200 cd07937 DRE_TIM_PC_TC_5S Pyruv 30.1 1.2E+02 0.0025 32.1 6.2 50 51-112 88-137 (275)
201 PRK09432 metF 5,10-methylenete 30.0 99 0.0021 33.2 5.7 88 59-162 168-266 (296)
202 cd06564 GH20_DspB_LnbB-like Gl 29.8 1.6E+02 0.0034 31.9 7.3 141 52-210 15-195 (326)
203 PLN03059 beta-galactosidase; P 29.4 96 0.0021 38.1 6.0 40 480-521 620-659 (840)
204 COG3915 Uncharacterized protei 29.2 1.7E+02 0.0038 28.2 6.4 47 59-111 39-87 (155)
205 smart00758 PA14 domain in bact 29.1 2.6E+02 0.0056 25.5 7.7 65 481-558 46-111 (136)
206 cd07381 MPP_CapA CapA and rela 28.7 6.3E+02 0.014 25.6 12.2 127 57-211 67-210 (239)
207 PRK10966 exonuclease subunit S 28.5 4E+02 0.0086 29.9 10.4 83 39-134 42-134 (407)
208 TIGR00542 hxl6Piso_put hexulos 28.0 83 0.0018 32.7 4.7 58 55-113 95-153 (279)
209 PF08924 DUF1906: Domain of un 28.0 1.3E+02 0.0029 28.5 5.6 92 52-163 36-128 (136)
210 KOG0622 Ornithine decarboxylas 27.9 85 0.0018 35.4 4.8 67 52-128 191-258 (448)
211 PLN02540 methylenetetrahydrofo 27.9 1.4E+02 0.0031 35.1 6.9 87 62-162 164-259 (565)
212 COG5309 Exo-beta-1,3-glucanase 27.8 5.4E+02 0.012 27.8 10.4 119 52-218 61-179 (305)
213 PF00121 TIM: Triosephosphate 27.7 45 0.00098 34.8 2.6 51 58-114 75-125 (244)
214 KOG3833 Uncharacterized conser 27.7 66 0.0014 35.1 3.8 53 55-113 444-499 (505)
215 PF04566 RNA_pol_Rpb2_4: RNA p 27.7 43 0.00094 27.7 2.0 14 510-523 1-14 (63)
216 TIGR03234 OH-pyruv-isom hydrox 27.5 76 0.0016 32.4 4.2 59 54-113 84-143 (254)
217 PRK08227 autoinducer 2 aldolas 27.5 1.4E+02 0.003 31.8 6.1 47 59-111 99-145 (264)
218 COG1891 Uncharacterized protei 27.4 21 0.00046 35.7 0.1 66 39-112 116-186 (235)
219 PRK09267 flavodoxin FldA; Vali 27.3 3.2E+02 0.0069 26.1 8.3 74 34-110 44-117 (169)
220 cd02871 GH18_chitinase_D-like 27.0 3.3E+02 0.0072 29.2 9.1 86 94-208 61-146 (312)
221 KOG0470 1,4-alpha-glucan branc 26.8 61 0.0013 38.9 3.6 57 57-113 258-331 (757)
222 TIGR01698 PUNP purine nucleoti 26.5 90 0.002 32.6 4.5 41 33-73 47-88 (237)
223 PF12733 Cadherin-like: Cadher 26.4 2.3E+02 0.005 24.0 6.4 46 496-559 26-72 (88)
224 cd07944 DRE_TIM_HOA_like 4-hyd 26.3 1.1E+02 0.0024 32.2 5.2 45 57-113 85-129 (266)
225 KOG1065 Maltase glucoamylase a 25.7 1.2E+02 0.0026 37.0 5.9 62 56-122 313-380 (805)
226 PRK09250 fructose-bisphosphate 25.6 74 0.0016 35.1 3.8 48 60-113 152-199 (348)
227 PF01075 Glyco_transf_9: Glyco 25.0 46 0.00099 33.6 2.0 78 35-115 103-194 (247)
228 PRK14040 oxaloacetate decarbox 25.0 1.1E+02 0.0024 36.1 5.5 54 46-111 89-142 (593)
229 COG2360 Aat Leu/Phe-tRNA-prote 24.6 1E+02 0.0022 31.7 4.3 105 85-202 75-205 (221)
230 PRK06703 flavodoxin; Provision 24.6 3E+02 0.0064 25.8 7.4 103 34-161 46-148 (151)
231 cd03789 GT1_LPS_heptosyltransf 24.3 93 0.002 32.2 4.2 76 39-117 124-211 (279)
232 PRK07534 methionine synthase I 24.2 6E+02 0.013 27.8 10.6 73 96-206 221-295 (336)
233 PRK05265 pyridoxine 5'-phospha 24.0 1.1E+02 0.0024 32.1 4.5 45 57-119 116-161 (239)
234 PRK07094 biotin synthase; Prov 23.9 72 0.0016 34.1 3.4 51 57-110 129-182 (323)
235 cd04883 ACT_AcuB C-terminal AC 23.9 2.5E+02 0.0053 22.5 5.9 56 54-110 13-69 (72)
236 cd06525 GH25_Lyc-like Lyc mura 23.9 45 0.00097 32.8 1.7 42 93-134 103-148 (184)
237 PF13380 CoA_binding_2: CoA bi 23.8 1.3E+02 0.0029 27.4 4.7 44 51-110 63-106 (116)
238 cd00019 AP2Ec AP endonuclease 23.8 74 0.0016 33.0 3.4 60 54-114 85-144 (279)
239 PRK14582 pgaB outer membrane N 23.7 2.1E+02 0.0045 34.5 7.4 61 51-111 69-137 (671)
240 COG3684 LacD Tagatose-1,6-bisp 23.6 64 0.0014 34.3 2.8 52 59-113 116-167 (306)
241 KOG2566 Beta-glucocerebrosidas 23.6 2.3E+02 0.005 31.9 7.0 102 66-183 136-259 (518)
242 TIGR01361 DAHP_synth_Bsub phos 23.5 1.5E+02 0.0032 31.3 5.5 76 31-113 18-96 (260)
243 cd06415 GH25_Cpl1-like Cpl-1 l 23.5 2.5E+02 0.0054 27.9 7.0 43 93-135 108-157 (196)
244 PF05763 DUF835: Protein of un 23.5 3.9E+02 0.0084 25.5 7.9 105 85-210 1-113 (136)
245 PF01487 DHquinase_I: Type I 3 23.4 1.4E+02 0.0031 30.2 5.2 63 44-115 118-184 (224)
246 PRK10658 putative alpha-glucos 23.3 1.7E+02 0.0036 35.2 6.5 63 55-119 284-351 (665)
247 PRK10422 lipopolysaccharide co 23.3 1.3E+02 0.0028 32.4 5.3 71 42-115 189-273 (352)
248 TIGR03128 RuMP_HxlA 3-hexulose 23.0 1.8E+02 0.004 28.7 5.9 41 59-112 68-108 (206)
249 PLN02389 biotin synthase 23.0 1.1E+02 0.0024 34.0 4.7 52 56-110 177-230 (379)
250 cd00003 PNPsynthase Pyridoxine 22.9 1.1E+02 0.0025 31.9 4.4 45 57-119 113-158 (234)
251 cd07944 DRE_TIM_HOA_like 4-hyd 22.8 1.4E+02 0.0029 31.5 5.1 66 49-114 15-81 (266)
252 cd06594 GH31_glucosidase_YihQ 22.8 2.2E+02 0.0048 30.7 6.8 68 52-119 21-97 (317)
253 PTZ00372 endonuclease 4-like p 22.3 4.5E+02 0.0098 29.8 9.3 84 30-114 149-240 (413)
254 TIGR03551 F420_cofH 7,8-dideme 22.3 74 0.0016 34.6 3.1 51 57-110 141-196 (343)
255 PF07755 DUF1611: Protein of u 22.0 69 0.0015 34.7 2.7 116 38-218 34-151 (301)
256 cd08560 GDPD_EcGlpQ_like_1 Gly 22.0 1.4E+02 0.0029 33.1 5.1 53 55-113 246-298 (356)
257 TIGR03700 mena_SCO4494 putativ 21.7 74 0.0016 34.8 3.0 52 56-110 149-205 (351)
258 KOG3698 Hyaluronoglucosaminida 21.5 2.1E+02 0.0044 33.8 6.3 74 34-115 11-96 (891)
259 cd04886 ACT_ThrD-II-like C-ter 21.4 3.9E+02 0.0085 20.7 6.8 59 52-110 8-72 (73)
260 TIGR02201 heptsyl_trn_III lipo 21.4 1.4E+02 0.0031 31.9 5.0 67 49-115 195-271 (344)
261 cd04740 DHOD_1B_like Dihydroor 20.8 2.2E+02 0.0047 30.1 6.2 63 52-115 100-163 (296)
262 PRK04302 triosephosphate isome 20.7 1.8E+02 0.0039 29.5 5.4 59 46-114 62-122 (223)
263 KOG4039 Serine/threonine kinas 20.5 82 0.0018 32.0 2.7 67 48-119 103-172 (238)
264 cd06569 GH20_Sm-chitobiase-lik 20.5 1.9E+02 0.0041 32.9 6.0 58 52-112 20-116 (445)
265 PRK08175 aminotransferase; Val 20.4 1.6E+02 0.0034 32.2 5.3 55 54-112 148-203 (395)
266 PLN03036 glutamine synthetase; 20.3 2.8E+02 0.006 31.6 7.1 65 56-126 232-308 (432)
267 PRK08195 4-hyroxy-2-oxovalerat 20.2 1.8E+02 0.0039 31.8 5.5 45 57-113 91-135 (337)
268 PLN02231 alanine transaminase 20.1 2.8E+02 0.006 32.3 7.3 59 50-112 252-310 (534)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=3.3e-169 Score=1438.11 Aligned_cols=620 Identities=49% Similarity=0.911 Sum_probs=577.3
Q ss_pred HHHHHHHHHHcc----ccceeEEeeCCcEEECCEEEEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEccccCccCCc
Q 039348 8 FVLVAGLAMLCS----CLAIKVEYDANALIIDGQRKVIISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPR 83 (651)
Q Consensus 8 ~~~~~~~~~~~~----~~~~~v~~d~~~~~idG~~~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~ 83 (651)
+||+++||+|.| ....+|+||+++|+|||+|++|+||+|||||+||++|+|+|+||||+|+|||+||||||+|||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~ 88 (840)
T PLN03059 9 FLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS 88 (840)
T ss_pred hhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCC
Confidence 444555555433 4457999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhc
Q 039348 84 RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEA 163 (651)
Q Consensus 84 ~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~ 163 (651)
||+|||+|++||++||++|+|+||||||||||||||||++||+|.||+++|+|++|++||+|+++|++|+++|+++|+++
T Consensus 89 ~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~ 168 (840)
T PLN03059 89 PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSE 168 (840)
T ss_pred CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccCCCcEEEecccccccccccccCcchHHHHHHHHHHHHhcCCCcCeEEecCCCCCCcccccCCCcccCCCCCCCCC
Q 039348 164 NLFASQGGPIILAQIENEYGNIMEKYGDAGKQYIKWCANMAVAQNISEPWIMCQQSDAPEPMINTCNGFYCDQFKPNNPK 243 (651)
Q Consensus 164 ~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~vP~~~~~~~~~~~~v~~t~ng~~~~~~~~~~~~ 243 (651)
++++++||||||+|||||||++.+.++.++++||+||++|++++|++|||+||++.++++++++||||.+|+.|.+..+.
T Consensus 169 ~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~ 248 (840)
T PLN03059 169 KLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDY 248 (840)
T ss_pred ceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCC
Confidence 99999999999999999999987777778999999999999999999999999998888899999999999999887777
Q ss_pred CCceeeecccccccccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeeEeeccCCCCCCCCCCcccccccCCCCCCCCCCCC
Q 039348 244 SPKMWTENWTGWFKLWGGRDPQRTAEDLAFSVARFFQNGGVLNNYYMYHGGTNFGRTAGGPYIATSYDYNAPLDEYGNLN 323 (651)
Q Consensus 244 ~P~~~~E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~ 323 (651)
+|+||+|||+|||++||++++.|+++|++++++++|++|+|++||||||||||||||+|+++++|||||||||+|+|+++
T Consensus 249 ~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t 328 (840)
T PLN03059 249 KPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPR 328 (840)
T ss_pred CCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred chhHHHHHHHHHHHhhhhccccCCcceeeeccCceeEEEEeeCCCCceEEEEecCCCCceeEEEeCCcceeeecCceEEE
Q 039348 324 QPKWGHLKQLHASIKQAEKFLTNGTVETKSVMNFVDLTKFTLNATGERFCMLSNSDNTGDYTADLGEDGKFFVPAWSVTF 403 (651)
Q Consensus 324 ~pKy~~lr~l~~fl~~~~~~l~~~~p~~~~~g~~~~~~~y~~~~~g~~~~Fl~N~~~~~~~~v~~~~~g~~~lp~~sv~i 403 (651)
+|||.+||++|.+++.++|+|+..+|....+|+.+++++|..++ +|++|+.|++++.+.+|+|+++ +|.||+|||||
T Consensus 329 ~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~--~caaFl~n~~~~~~~~v~f~g~-~y~lp~~Svsi 405 (840)
T PLN03059 329 EPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS--ACAAFLANYDTKYSVKVTFGNG-QYDLPPWSVSI 405 (840)
T ss_pred hhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc--chhhheeccCCCCceeEEECCc-ccccCccceee
Confidence 68999999999999999999999999889999999999998664 6999999999999999999999 99999999999
Q ss_pred ccCCCceeeeeeeeccceeeeEeeccccccccccccccccccccccCccccccCCCCccccchhhhhhcccCCceeeEEE
Q 039348 404 LQNCSKEVYNTAKINTQTSVMVTKHSEEDAYGNEVKPAKLSWMWAPEPIQDTLKGNGRFEAAQLLDQKEASGDVSDYLWY 483 (651)
Q Consensus 404 lp~~~~v~~~Ta~v~~q~~~~~~~~~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~~~Eql~~T~D~tgYlwY 483 (651)
||||++++|||++|++|++.+++.+. ...+.|++++||+ ++..++.+++..+++||+++|+|.+||+||
T Consensus 406 lpd~~~~lfnta~v~~q~~~~~~~~~----------~~~~~w~~~~e~~-~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY 474 (840)
T PLN03059 406 LPDCKTAVFNTARLGAQSSQMKMNPV----------GSTFSWQSYNEET-ASAYTDDTTTMDGLWEQINVTRDATDYLWY 474 (840)
T ss_pred cccccceeeeccccccccceeecccc----------cccccceeecccc-cccccCCCcchhhHHHhhcccCCCCceEEE
Confidence 99999999999999999887765432 2455899999962 345556788889999999999999999999
Q ss_pred EEEEeec-CCc-c---cceeEEEeecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeeccCCccEEEEEEe
Q 039348 484 MTSVDTR-NIS-L---KNMTLRVSTNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKKGLNVISLLSV 558 (651)
Q Consensus 484 ~T~v~~~-~~~-~---~~~~Lrv~s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~g~n~LsiLv~ 558 (651)
+|+|..+ ++. + ..++|+|.+++|++||||||+++|++++. .....|+++.++.|+.|.|+|+||||
T Consensus 475 ~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~---------~~~~~~~~~~~v~l~~g~n~L~iLse 545 (840)
T PLN03059 475 MTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGE---------LSNPKLTFSQNVKLTVGINKISLLSV 545 (840)
T ss_pred EEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEee---------cCCcceEEecccccCCCceEEEEEEE
Confidence 9999886 221 1 45789999999999999999999999988 56678999999999999999999999
Q ss_pred ccCcccccCcccccccccccccEEEeccCCceecCCccceEEEEEeeeceeeccCCCCC-CcccccCCC-CCCCCeEEEE
Q 039348 559 TVGLANYGAFYDLKPTGLINGGVLLNGKGNNSINATTYQWSYKVGLNGEAQQFHDPNSR-NANWNSTKV-PKNRPMTWYK 636 (651)
Q Consensus 559 nvG~~NyG~~~e~~~kGI~~g~V~l~g~~~~~idls~~~W~y~vgL~GE~~~i~d~~g~-~v~W~~~~~-~~~~pltWYk 636 (651)
||||+|||++||.+.||| .|+|+|.|++++.+||++.+|.||+||.||.++|+++++. +++|++.+. ++++|+||||
T Consensus 546 ~vG~~NyG~~le~~~kGI-~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK 624 (840)
T PLN03059 546 AVGLPNVGLHFETWNAGV-LGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYK 624 (840)
T ss_pred eCCCCccCcccccccccc-cccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEE
Confidence 999999999999999999 8999999999999999999999999999999999999888 999988755 7788999999
Q ss_pred EEecCCCCCCCcccC
Q 039348 637 TSFKTPSGEEPVINK 651 (651)
Q Consensus 637 t~F~~P~G~~pv~l~ 651 (651)
++|++|+|+|||+||
T Consensus 625 ~~Fd~p~g~Dpv~LD 639 (840)
T PLN03059 625 TTFDAPGGNDPLALD 639 (840)
T ss_pred EEEeCCCCCCCEEEe
Confidence 999999999999997
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-141 Score=1169.93 Aligned_cols=556 Identities=52% Similarity=0.969 Sum_probs=515.8
Q ss_pred ccceeEEeeCCcEEECCEEEEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHH
Q 039348 20 CLAIKVEYDANALIIDGQRKVIISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFF 99 (651)
Q Consensus 20 ~~~~~v~~d~~~~~idG~~~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl 99 (651)
.+...|+||+++|++||+|++++||+|||+|++|++|+++|+|+|++|+|+|+||||||.|||.||+|||+|+.||++||
T Consensus 15 ~~~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFi 94 (649)
T KOG0496|consen 15 GSSFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFI 94 (649)
T ss_pred cceeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHH
Confidence 33899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEeccc
Q 039348 100 KLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIE 179 (651)
Q Consensus 100 ~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIE 179 (651)
++|++.||||+||+||||||||++||+|.||...|++.+||+|++|+++|++|+++|++++| +|+++|||||||+|||
T Consensus 95 kl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIE 172 (649)
T KOG0496|consen 95 KLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIE 172 (649)
T ss_pred HHHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ccccccccccCcchHHHHHHHHHHHHhcCCCcCeEEecCCCCCCcccccCCCccc-CCCC-CCCCCCCceeeeccccccc
Q 039348 180 NEYGNIMEKYGDAGKQYIKWCANMAVAQNISEPWIMCQQSDAPEPMINTCNGFYC-DQFK-PNNPKSPKMWTENWTGWFK 257 (651)
Q Consensus 180 NEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~vP~~~~~~~~~~~~v~~t~ng~~~-~~~~-~~~~~~P~~~~E~~~Gwf~ 257 (651)
||||.+...|++.++.|++|.+.|+...+.+|||+||++.|+|++++++|||.+| +.|. +++|++|+||||+|+|||+
T Consensus 173 NEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~ 252 (649)
T KOG0496|consen 173 NEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFT 252 (649)
T ss_pred chhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhh
Confidence 9999988888889999999999999999999999999999999999999999999 9998 9999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeeEeeccCCCCCCCCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHH
Q 039348 258 LWGGRDPQRTAEDLAFSVARFFQNGGVLNNYYMYHGGTNFGRTAGGPYIATSYDYNAPLDEYGNLNQPKWGHLKQLHASI 337 (651)
Q Consensus 258 ~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pKy~~lr~l~~fl 337 (651)
+||++.+.|++|+++..+++++++|+|++||||||||||||++|| ++.+|||||||||| |..++|||+|+|.+|..+
T Consensus 253 ~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~ 329 (649)
T KOG0496|consen 253 HWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSY 329 (649)
T ss_pred hhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhh
Confidence 999999999999999999999999999999999999999999998 99999999999999 999999999999999999
Q ss_pred hhhhccccCCcceeeeccCceeEEEEeeCCCCceEEEEecCCCCceeEEEeCCcceeeecCceEEEccCCCceeeeeeee
Q 039348 338 KQAEKFLTNGTVETKSVMNFVDLTKFTLNATGERFCMLSNSDNTGDYTADLGEDGKFFVPAWSVTFLQNCSKEVYNTAKI 417 (651)
Q Consensus 338 ~~~~~~l~~~~p~~~~~g~~~~~~~y~~~~~g~~~~Fl~N~~~~~~~~v~~~~~g~~~lp~~sv~ilp~~~~v~~~Ta~v 417 (651)
+.++|.+..+++....+|+.+ ++|..|++|++......+.|++. .|.+|+|+++|||||++++||||++
T Consensus 330 d~~ep~lv~gd~~~~kyg~~~----------~~C~~Fl~n~~~~~~~~v~f~~~-~y~~~~~slsilpdck~~~~nta~~ 398 (649)
T KOG0496|consen 330 DYCEPALVAGDITTAKYGNLR----------EACAAFLSNNNGAPAAPVPFNKP-KYRLPPWSLSILPDCKTVVYNTAKV 398 (649)
T ss_pred hhcCccccccCcccccccchh----------hHHHHHHhcCCCCCCCccccCCC-ccccCceeEEechhhcchhhhcccc
Confidence 999999999998877777654 66999999999999999999999 9999999999999999999999877
Q ss_pred ccceeeeEeeccccccccccccccccccccccCccccccCCCCccccchhhhhhcccCCceeeEEEEEEEeec-CCcccc
Q 039348 418 NTQTSVMVTKHSEEDAYGNEVKPAKLSWMWAPEPIQDTLKGNGRFEAAQLLDQKEASGDVSDYLWYMTSVDTR-NISLKN 496 (651)
Q Consensus 418 ~~q~~~~~~~~~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~~~Eql~~T~D~tgYlwY~T~v~~~-~~~~~~ 496 (651)
.+| |....||++ +|..++ ..+|+.|+|++..+ .| .
T Consensus 399 ~~~------------------------~~~~~e~~~--------------~~~~~~---~~~~ll~~~~~t~d~sd---~ 434 (649)
T KOG0496|consen 399 MAQ------------------------WISFTEPIP--------------SEAVGQ---SFGGLLEQTNLTKDKSD---T 434 (649)
T ss_pred ccc------------------------cccccCCCc--------------cccccC---cceEEEEEEeeccccCC---C
Confidence 543 555667532 333444 44555555555443 11 2
Q ss_pred eeEEEe-ecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeeccCCccEEEEEEeccCcccccCcccccccc
Q 039348 497 MTLRVS-TNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKKGLNVISLLSVTVGLANYGAFYDLKPTG 575 (651)
Q Consensus 497 ~~Lrv~-s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~g~n~LsiLv~nvG~~NyG~~~e~~~kG 575 (651)
..|+|. |++|++||||||+++|+.++. .....+.+.+++.|+.|.|+|+||||||||+||| +||.+.||
T Consensus 435 t~~~i~ls~g~~~hVfvNg~~~G~~~g~---------~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~G 504 (649)
T KOG0496|consen 435 TSLKIPLSLGHALHVFVNGEFAGSLHGN---------NEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKG 504 (649)
T ss_pred ceEeecccccceEEEEECCEEeeeEecc---------ccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccc
Confidence 345566 999999999999999999998 5567799999999999999999999999999999 89999999
Q ss_pred cccccEEEeccCCceecCCccceEEEEEeeeceeeccCCCCC-CcccccCCC-CCCCCeEEEEEEecCCCCCCCcccC
Q 039348 576 LINGGVLLNGKGNNSINATTYQWSYKVGLNGEAQQFHDPNSR-NANWNSTKV-PKNRPMTWYKTSFKTPSGEEPVINK 651 (651)
Q Consensus 576 I~~g~V~l~g~~~~~idls~~~W~y~vgL~GE~~~i~d~~g~-~v~W~~~~~-~~~~pltWYkt~F~~P~G~~pv~l~ 651 (651)
| .|+|.|.|+ +|++..+|.||+||.||++.+++++++ +|+|..... +.++|+|||| +|++|+|++|++||
T Consensus 505 i-~g~v~l~g~----~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ld 576 (649)
T KOG0496|consen 505 I-LGPVYLNGL----IDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALD 576 (649)
T ss_pred c-ccceEEeee----eccceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEe
Confidence 9 899999985 899999999999999999999999999 999998876 5568999999 99999999999996
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.7e-90 Score=734.36 Aligned_cols=297 Identities=42% Similarity=0.820 Sum_probs=231.1
Q ss_pred cEEECCEEEEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEE
Q 039348 31 ALIIDGQRKVIISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI 110 (651)
Q Consensus 31 ~~~idG~~~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi 110 (651)
+|+|||||++|+|||+||+|+|+++|+|+|+||||+|+|||++||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccC
Q 039348 111 LRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYG 190 (651)
Q Consensus 111 lr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~ 190 (651)
|||||||||||++||+|.||++++++++|++||.|++++++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999998999999999999999999999999999 7889999999999999999942
Q ss_pred cchHHHHHHHHHHHHhcCCC-cCeEEecCC--------CCCCcccccCCCcccCCC--------CCCCCCCCceeeeccc
Q 039348 191 DAGKQYIKWCANMAVAQNIS-EPWIMCQQS--------DAPEPMINTCNGFYCDQF--------KPNNPKSPKMWTENWT 253 (651)
Q Consensus 191 ~~~~~y~~~l~~~~~~~gi~-vP~~~~~~~--------~~~~~v~~t~ng~~~~~~--------~~~~~~~P~~~~E~~~ 253 (651)
.++++||+.|++++++.|++ ++.++++.. +.|+..+.+++++.|... ...+|++|+|++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999998 667776542 233333445555666321 2446888999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeeEeeccCCCCCCCCCCcc----cccccCCCCCCCCCCCCchhHHH
Q 039348 254 GWFKLWGGRDPQRTAEDLAFSVARFFQNGGVLNNYYMYHGGTNFGRTAGGPYI----ATSYDYNAPLDEYGNLNQPKWGH 329 (651)
Q Consensus 254 Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~----~tSYDy~Apl~E~G~~~~pKy~~ 329 (651)
|||++||++.+.+++++++..+++++++| +++||||||||||||+++|++.. +|||||+|||+|+|++ +|||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g-~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKG-NSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHC-SEEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhh-cccceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 99999999999999999999999999998 56799999999999999986554 4999999999999998 699999
Q ss_pred HHHHHHH
Q 039348 330 LKQLHAS 336 (651)
Q Consensus 330 lr~l~~f 336 (651)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999965
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-36 Score=341.52 Aligned_cols=289 Identities=24% Similarity=0.370 Sum_probs=214.5
Q ss_pred EEeeCCcEEECCEEEEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEE-ccccCccCCcCceeeccCchhHHHHHHHHH
Q 039348 25 VEYDANALIIDGQRKVIISGSIHYPRSTPEMWPDLIQKAKDGGLDAIET-YIFWNVHEPRRREYDFSGNLDFVKFFKLVQ 103 (651)
Q Consensus 25 v~~d~~~~~idG~~~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~-yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~ 103 (651)
|.+++..+++||+|++++||++||+|+|++.|.++|++||++|+|+|++ |+.|++|||++|+|||+ .+|+. |+++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4578899999999999999999999999999999999999999999999 99999999999999999 78888 899999
Q ss_pred HcCCEEEEecCc-eeeeecCCCCCCcccccCCCCc---------cccCChhHHHHHHHHHHHHHHHHHhccccccCCCcE
Q 039348 104 DAGLYAILRIGP-YVCAEWNYGGFPMWLHNTPGIQ---------LRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPI 173 (651)
Q Consensus 104 ~~GL~Vilr~GP-yi~aEw~~GG~P~WL~~~p~i~---------~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpI 173 (651)
+.||+||||||| ..|.+|..+++|+||..++.-. +..+++.|++++++++++|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 9999999999999998765422 23457779998888666665553 3689999
Q ss_pred EEecccccccccccccCcchHHHHHHHHHHHHhc-CCCcCeEEecCC-CCCC-cccccCC--------CcccCCCCCCCC
Q 039348 174 ILAQIENEYGNIMEKYGDAGKQYIKWCANMAVAQ-NISEPWIMCQQS-DAPE-PMINTCN--------GFYCDQFKPNNP 242 (651)
Q Consensus 174 I~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~-gi~vP~~~~~~~-~~~~-~v~~t~n--------g~~~~~~~~~~~ 242 (651)
|+||++||||++.|.+..|.+.|..||++.+-.. .+.-+|=+.--+ +..+ .-|.+-+ +.+- .|.....
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~l-d~~~f~~ 231 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYL-DYRRFES 231 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchh-hHhhhhh
Confidence 9999999999966666778899999999887321 223333221100 0000 0011101 1100 1111111
Q ss_pred C----CCceeeecccccc-cccCCCCCCCC-HHHHHHHHHHHHHcCCeeeeeeEeeccCCCC------CCCCCC---c--
Q 039348 243 K----SPKMWTENWTGWF-KLWGGRDPQRT-AEDLAFSVARFFQNGGVLNNYYMYHGGTNFG------RTAGGP---Y-- 305 (651)
Q Consensus 243 ~----~P~~~~E~~~Gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~G~~---~-- 305 (651)
. -+....|.|-+|| +.|..+.-... .+.-++.+++.|..+.. -||||+|+|++|+ +.+|+. +
T Consensus 232 e~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~ 310 (673)
T COG1874 232 EQILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWL 310 (673)
T ss_pred hhhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceee
Confidence 1 1556677788888 66665544443 33334455566666555 6999999999999 666654 2
Q ss_pred -----ccccccCCCCCCCCCCCC
Q 039348 306 -----IATSYDYNAPLDEYGNLN 323 (651)
Q Consensus 306 -----~~tSYDy~Apl~E~G~~~ 323 (651)
..++|++.+.+.+.|..+
T Consensus 311 me~~P~~vn~~~~n~~~~~G~~~ 333 (673)
T COG1874 311 MEQLPSVVNWALYNKLKRPGALR 333 (673)
T ss_pred ccCCcchhhhhhccCCCCCcccc
Confidence 469999999999999854
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.87 E-value=3.7e-22 Score=216.39 Aligned_cols=264 Identities=18% Similarity=0.265 Sum_probs=163.6
Q ss_pred eeCCCCCccchHHHHHHHHHcCCCEEEE-ccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCC
Q 039348 46 IHYPRSTPEMWPDLIQKAKDGGLDAIET-YIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYG 124 (651)
Q Consensus 46 ~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~-yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G 124 (651)
+++..++++.|+++|++||++|+|+|++ .+.|+.+||+||+|||+ .||++|++|+++||+|||++. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 5677889999999999999999999997 56799999999999999 899999999999999999974 56
Q ss_pred CCCccccc-CCCCcc----------------ccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEeccccccccccc
Q 039348 125 GFPMWLHN-TPGIQL----------------RTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIME 187 (651)
Q Consensus 125 G~P~WL~~-~p~i~~----------------Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~ 187 (651)
..|.||.+ +|++.. ..++|.|++++++++++|++++++++ .||++||+||+|...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p-------~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHP-------AVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTT-------TEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccc-------eEEEEEeccccCcCcC
Confidence 79999975 677532 24578999999999999999998554 7999999999987533
Q ss_pred ccCcchHHHHHHHHHHHHhc-------CC-------------CcCeEEecCC----------------------------
Q 039348 188 KYGDAGKQYIKWCANMAVAQ-------NI-------------SEPWIMCQQS---------------------------- 219 (651)
Q Consensus 188 ~~~~~~~~y~~~l~~~~~~~-------gi-------------~vP~~~~~~~---------------------------- 219 (651)
.+..+.++|.+||++++... |. ..|..+....
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23346788999999988631 11 1232221000
Q ss_pred -CCCCcccccCC--Cc------------ccC-----CC----------------------CCCCCCCCceeeeccccccc
Q 039348 220 -DAPEPMINTCN--GF------------YCD-----QF----------------------KPNNPKSPKMWTENWTGWFK 257 (651)
Q Consensus 220 -~~~~~v~~t~n--g~------------~~~-----~~----------------------~~~~~~~P~~~~E~~~Gwf~ 257 (651)
..|+. ..+.| |. .+| .+ .....++|.+++|..+| -.
T Consensus 224 ~~~p~~-~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 224 EYDPDH-PVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HhCCCc-eEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 00110 00100 10 000 00 01146789999999998 55
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeeEeeccCCCCCCCCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHH
Q 039348 258 LWGGRDPQRTAEDLAFSVARFFQNGGVLNNYYMYHGGTNFGRTAGGPYIATSYDYNAPLDEYGNLNQPKWGHLKQLHASI 337 (651)
Q Consensus 258 ~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pKy~~lr~l~~fl 337 (651)
.|+.......+..+....-.-++.|+..+.|+-+ ..--+|.-.. ..+.|+-+|...+++|.+++++..-|
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~~~~~~e~~~~~~~l 371 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREPTRRYREVAQLGREL 371 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B-HHHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCCCcHHHHHHHHHHHH
Confidence 6766666666677776666788999999887766 3223332211 13688889933589999999999877
Q ss_pred hh
Q 039348 338 KQ 339 (651)
Q Consensus 338 ~~ 339 (651)
+.
T Consensus 372 ~~ 373 (374)
T PF02449_consen 372 KK 373 (374)
T ss_dssp HT
T ss_pred hc
Confidence 64
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.30 E-value=1.2e-10 Score=122.82 Aligned_cols=192 Identities=18% Similarity=0.276 Sum_probs=124.3
Q ss_pred EEeeCCcEEECCEEEEEEEEEeeCCC------CCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHH
Q 039348 25 VEYDANALIIDGQRKVIISGSIHYPR------STPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKF 98 (651)
Q Consensus 25 v~~d~~~~~idG~~~~i~sG~~Hy~r------~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~f 98 (651)
|.+.++.|+|||||++|-+...|... .+++.|+.+|++||++|+|+|++ .|-|. -.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 67889999999999999999999643 47889999999999999999999 66664 2588
Q ss_pred HHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecc
Q 039348 99 FKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQI 178 (651)
Q Consensus 99 l~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI 178 (651)
+++|.++||.|+..+.=.-++.|..-| .......||.+.+.+.+-+++++++.+.|| .||||=+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFG---------NCNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTS---------CTSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCC---------ccccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheeec
Confidence 999999999999765210111222111 012456789999988888888888887554 8999999
Q ss_pred cccccccccccCcchHHHHHHHHHHHHhcCCCcCeEEecCCC--CCCccc-ccCCCcccC-----CCC----C--CCCCC
Q 039348 179 ENEYGNIMEKYGDAGKQYIKWCANMAVAQNISEPWIMCQQSD--APEPMI-NTCNGFYCD-----QFK----P--NNPKS 244 (651)
Q Consensus 179 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~vP~~~~~~~~--~~~~v~-~t~ng~~~~-----~~~----~--~~~~~ 244 (651)
-||-. ...+++.|.+++++..-.-|........ ..+.+. +...+.|-. .+. . ..+.+
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99983 3577888999999887777765543310 011111 111111110 010 1 24789
Q ss_pred Cceeeeccccccc
Q 039348 245 PKMWTENWTGWFK 257 (651)
Q Consensus 245 P~~~~E~~~Gwf~ 257 (651)
|.+.+||....+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999766554
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.14 E-value=6.2e-09 Score=120.15 Aligned_cols=159 Identities=13% Similarity=0.088 Sum_probs=112.9
Q ss_pred eeEEeeCCcEEECCEEEEEEEEEeeCCC------CCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHH
Q 039348 23 IKVEYDANALIIDGQRKVIISGSIHYPR------STPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFV 96 (651)
Q Consensus 23 ~~v~~d~~~~~idG~~~~i~sG~~Hy~r------~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~ 96 (651)
++|++++..|+|||+|+++-+...|... .+++.|..+|+.||++|+|+|++ .|-|. =.
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~-----------~~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY-----------SE 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC-----------CH
Confidence 6789999999999999999998888532 46778999999999999999999 46653 13
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc-------c-CCCCccccCChhHHHHHHHHHHHHHHHHHhcccccc
Q 039348 97 KFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLH-------N-TPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFAS 168 (651)
Q Consensus 97 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~-------~-~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~ 168 (651)
+|+++|.++||+|+-... . -|+..|.. + .+....-..+|.+.++..+-+++++++.+
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~------- 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-------VGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK------- 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-------ccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-------
Confidence 789999999999997742 1 11222221 1 11111123456677666666666666555
Q ss_pred CCCcEEEecccccccccccccCcchHHHHHHHHHHHHhcCCCcCeEEe
Q 039348 169 QGGPIILAQIENEYGNIMEKYGDAGKQYIKWCANMAVAQNISEPWIMC 216 (651)
Q Consensus 169 ~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~vP~~~~ 216 (651)
|+..||||-+-||.... ......+++.|.+.+++..-.-|...+
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 55689999999997531 123457888888889988877776654
No 8
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.04 E-value=5.9e-09 Score=126.54 Aligned_cols=149 Identities=22% Similarity=0.235 Sum_probs=104.8
Q ss_pred eeEEeeCCcEEECCEEEEEEEEEeeCC------CCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHH
Q 039348 23 IKVEYDANALIIDGQRKVIISGSIHYP------RSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFV 96 (651)
Q Consensus 23 ~~v~~d~~~~~idG~~~~i~sG~~Hy~------r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~ 96 (651)
++|++++..|+|||+|+++-+...|.. +.+++.++++|+.||++|+|+|++ .|-|. =.
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HP 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 567888889999999999999998842 357889999999999999999999 45553 14
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEe
Q 039348 97 KFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILA 176 (651)
Q Consensus 97 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 176 (651)
+|+++|.++||+|+-... . | ..|-.|.. .-.+||.|.+++.+=+++++.+.+ |+..||||
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e-~hg~~~~~--------~~~~dp~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---E-THGMVPMN--------RLSDDPRWLPAMSERVTRMVQRDR-------NHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---c-ccCCcccc--------CCCCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 789999999999997752 1 1 11111210 014577787666554555555544 56699999
Q ss_pred cccccccccccccCcchHHHHHHHHHHHHhcCCCcCeEEe
Q 039348 177 QIENEYGNIMEKYGDAGKQYIKWCANMAVAQNISEPWIMC 216 (651)
Q Consensus 177 QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~vP~~~~ 216 (651)
=+-||-|. + ...+.+.+.+++..-.-|....
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 99999763 2 1234566666666656665554
No 9
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=99.02 E-value=1.9e-09 Score=103.61 Aligned_cols=104 Identities=26% Similarity=0.271 Sum_probs=81.5
Q ss_pred hhcccCCceeeEEEEEEEeecCC-cccceeEEEeecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeeccC
Q 039348 470 QKEASGDVSDYLWYMTSVDTRNI-SLKNMTLRVSTNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKK 548 (651)
Q Consensus 470 ql~~T~D~tgYlwY~T~v~~~~~-~~~~~~Lrv~s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~ 548 (651)
+........++.||+++|.++++ .-++..|+|.++.+.+.|||||++||++.+. + .+|.++++..|+.
T Consensus 59 ~~~~~~~~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~---------~--~~~~~dIt~~l~~ 127 (167)
T PF02837_consen 59 GDPELWDYSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGG---------Y--TPFEFDITDYLKP 127 (167)
T ss_dssp TGCCTSTCCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEEST---------T--S-EEEECGGGSSS
T ss_pred ccccccccCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCC---------c--CCeEEeChhhccC
Confidence 44556668999999999999821 0167899999999999999999999999977 4 5799999999999
Q ss_pred Cc-cEEEEEEeccCcccccCccc-ccccccccccEEEec
Q 039348 549 GL-NVISLLSVTVGLANYGAFYD-LKPTGLINGGVLLNG 585 (651)
Q Consensus 549 g~-n~LsiLv~nvG~~NyG~~~e-~~~kGI~~g~V~l~g 585 (651)
|. |+|.|.+.+..-..+-+.++ ..++|| .++|.|.-
T Consensus 128 g~~N~l~V~v~~~~~~~~~~~~~~~~~~GI-~r~V~L~~ 165 (167)
T PF02837_consen 128 GEENTLAVRVDNWPDGSTIPGFDYFNYAGI-WRPVWLEA 165 (167)
T ss_dssp EEEEEEEEEEESSSGGGCGBSSSEEE--EE-ESEEEEEE
T ss_pred CCCEEEEEEEeecCCCceeecCcCCccCcc-ccEEEEEE
Confidence 98 99999999765433322233 778999 89999974
No 10
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.93 E-value=1.5e-08 Score=104.11 Aligned_cols=161 Identities=16% Similarity=0.231 Sum_probs=111.8
Q ss_pred CCEEEEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEccccCccC-CcCce-eeccCchhHHHHHHHHHHcCCEEEEe
Q 039348 35 DGQRKVIISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHE-PRRRE-YDFSGNLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 35 dG~~~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hE-p~~G~-fdF~g~~dL~~fl~la~~~GL~Vilr 112 (651)
+|+++.+.+-+.|... +..-++.++.||++|+|+||+.|.|...+ |.++. ++=+....|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 7999999999999322 12678999999999999999999995544 67664 66666679999999999999999987
Q ss_pred cCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccc--cC
Q 039348 113 IGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEK--YG 190 (651)
Q Consensus 113 ~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~--~~ 190 (651)
+= + .|.|...... -...+...+...++.+.|+++++++ .+|++++|=||....... ..
T Consensus 82 ~h----~------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~~~-------~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----N------APGWANGGDG---YGNNDTAQAWFKSFWRALAKRYKDN-------PPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----E------STTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHTTT-------TTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----c------Cccccccccc---cccchhhHHHHHhhhhhhccccCCC-------CcEEEEEecCCccccCCccccc
Confidence 52 1 2777433211 1223334455556777777777633 479999999999764211 00
Q ss_pred ----cchHHHHHHHHHHHHhcCCCcCeEEec
Q 039348 191 ----DAGKQYIKWCANMAVAQNISEPWIMCQ 217 (651)
Q Consensus 191 ----~~~~~y~~~l~~~~~~~gi~vP~~~~~ 217 (651)
..=.++.+.+.+..|+.+-+.+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 011456667777788888887766543
No 11
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.89 E-value=3.1e-08 Score=120.48 Aligned_cols=260 Identities=16% Similarity=0.145 Sum_probs=150.4
Q ss_pred eeEEeeCCcEEECCEEEEEEEEEeeCCC------CCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHH
Q 039348 23 IKVEYDANALIIDGQRKVIISGSIHYPR------STPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFV 96 (651)
Q Consensus 23 ~~v~~d~~~~~idG~~~~i~sG~~Hy~r------~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~ 96 (651)
++|++++..|+|||+|+++-+...|... .+++.|+.+|+.||++|+|+|++ .|-|. =.
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~-----------~~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN-----------DP 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 6788899999999999999999888432 36789999999999999999999 36554 23
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEe
Q 039348 97 KFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILA 176 (651)
Q Consensus 97 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 176 (651)
+|+++|.++||+|+-.. |..|..|.. . .+...-+++|.+.++..+-+++++++.+ |+..||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~-------~--~~~~~~~~~p~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFAN-------V--GDISRITDDPQWEKVYVDRIVRHIHAQK-------NHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccc-------c--cccccccCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 78999999999999775 332222211 0 0111124667776544444444444444 56699999
Q ss_pred cccccccccccccCcchHHHHHHHHHHHHhcCCCcCeEEecCCCCC--CcccccCCCcc--cCCCCCCCCCCCceeeecc
Q 039348 177 QIENEYGNIMEKYGDAGKQYIKWCANMAVAQNISEPWIMCQQSDAP--EPMINTCNGFY--CDQFKPNNPKSPKMWTENW 252 (651)
Q Consensus 177 QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~vP~~~~~~~~~~--~~v~~t~ng~~--~~~~~~~~~~~P~~~~E~~ 252 (651)
=+-||-+. | . .++.+.+.+++..-.-|+. ..+.... .+|+...-+.+ +..+....+.+|++.+|+-
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~-~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLVH-YEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceEE-eCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 99999763 2 1 2356777777776666653 3221111 11221110111 0112223357999999984
Q ss_pred cccccccCCCCCCCCHHHHHHHHHH-----------HHHcC-----CeeeeeeEeeccCCCCCCCCCCcccccccCCCCC
Q 039348 253 TGWFKLWGGRDPQRTAEDLAFSVAR-----------FFQNG-----GVLNNYYMYHGGTNFGRTAGGPYIATSYDYNAPL 316 (651)
Q Consensus 253 ~Gwf~~wG~~~~~~~~~~~~~~~~~-----------~l~~g-----~s~~n~YM~hGGTNfG~~~G~~~~~tSYDy~Apl 316 (651)
.+.-..=| ..++.-..+.+ ++..| -.. .-|+.+|| .||-+. . ..++--+.-+
T Consensus 515 hamgn~~g------~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G-~~~~~ygG-d~g~~p---~-~~~f~~~Glv 582 (1021)
T PRK10340 515 HAMGNGPG------GLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNG-NVWYKYGG-DYGDYP---N-NYNFCIDGLI 582 (1021)
T ss_pred hccCCCCC------CHHHHHHHHHhCCceeEEeeeecCcccccccCCCC-CEEEEECC-CCCCCC---C-CcCcccceeE
Confidence 32211000 01221111110 00000 000 13455666 355321 1 1223334678
Q ss_pred CCCCCCCchhHHHHHHHHHHHh
Q 039348 317 DEYGNLNQPKWGHLKQLHASIK 338 (651)
Q Consensus 317 ~E~G~~~~pKy~~lr~l~~fl~ 338 (651)
+-+|.+ .|.+.++|.+.+-++
T Consensus 583 ~~dr~p-~p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 583 YPDQTP-GPGLKEYKQVIAPVK 603 (1021)
T ss_pred CCCCCC-ChhHHHHHHhcceEE
Confidence 889985 799999998886655
No 12
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=6.5e-08 Score=114.20 Aligned_cols=135 Identities=21% Similarity=0.323 Sum_probs=103.4
Q ss_pred eeEEeeCCcEEECCEEEEEEEEEeeCCC-----C-CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHH
Q 039348 23 IKVEYDANALIIDGQRKVIISGSIHYPR-----S-TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFV 96 (651)
Q Consensus 23 ~~v~~d~~~~~idG~~~~i~sG~~Hy~r-----~-~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~ 96 (651)
++|++++..|.|||||+++-|..-|.+- . ..+.-+++|+.||++|+|+|+|- |-|. =.
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~-----------~~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPN-----------SE 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCC-----------CH
Confidence 6899999999999999999999999653 3 33447899999999999999993 7776 35
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEe
Q 039348 97 KFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILA 176 (651)
Q Consensus 97 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 176 (651)
+|+++|.++||+||-.+ ..||.. .| +|+.|++.+..=+++++++.|.| +.||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knH-------PSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNH-------PSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCC-------CcEEEE
Confidence 88999999999999885 223322 22 78889988887777777777754 589999
Q ss_pred cccccccccccccCcchHHHHHHHHHHH
Q 039348 177 QIENEYGNIMEKYGDAGKQYIKWCANMA 204 (651)
Q Consensus 177 QIENEyg~~~~~~~~~~~~y~~~l~~~~ 204 (651)
=+.||-|. |.....-.+|.++.-
T Consensus 402 s~gNE~~~-----g~~~~~~~~~~k~~d 424 (808)
T COG3250 402 SLGNESGH-----GSNHWALYRWFKASD 424 (808)
T ss_pred eccccccC-----ccccHHHHHHHhhcC
Confidence 99999874 323344445555443
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.72 E-value=6.1e-08 Score=88.52 Aligned_cols=85 Identities=25% Similarity=0.334 Sum_probs=59.6
Q ss_pred hhhhhhcccCCceeeEEEEEEEeec-CCccccee-EEEe-ecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEe
Q 039348 466 QLLDQKEASGDVSDYLWYMTSVDTR-NISLKNMT-LRVS-TNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDK 542 (651)
Q Consensus 466 ~~~Eql~~T~D~tgYlwY~T~v~~~-~~~~~~~~-Lrv~-s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~ 542 (651)
++.+..+.+++++||+|||++|... .+ .... |.+. +.+++++|||||+++|+.... .+.+.+|.+
T Consensus 22 ~~~l~~~~~g~~~g~~~Yrg~F~~~~~~--~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~----------~g~q~tf~~ 89 (111)
T PF13364_consen 22 GPVLYASDYGFHAGYLWYRGTFTGTGQD--TSLTPLNIQGGNAFRASVWVNGWFLGSYWPG----------IGPQTTFSV 89 (111)
T ss_dssp SSSTCCGCGTSSSCEEEEEEEEETTTEE--EEEE-EEECSSTTEEEEEEETTEEEEEEETT----------TECCEEEEE
T ss_pred CceeccCccccCCCCEEEEEEEeCCCcc--eeEEEEeccCCCceEEEEEECCEEeeeecCC----------CCccEEEEe
Confidence 3467778888899999999999753 11 1223 3343 569999999999999998844 122345555
Q ss_pred eee-ccCCccEEEEEEeccCc
Q 039348 543 AVS-LKKGLNVISLLSVTVGL 562 (651)
Q Consensus 543 ~~~-l~~g~n~LsiLv~nvG~ 562 (651)
|.. |+.+.|.|++|+.+||.
T Consensus 90 p~~il~~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 90 PAGILKYGNNVLVVLWDNMGH 110 (111)
T ss_dssp -BTTBTTCEEEEEEEEE-STT
T ss_pred CceeecCCCEEEEEEEeCCCC
Confidence 543 56676799999999985
No 14
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.39 E-value=2.9e-06 Score=98.24 Aligned_cols=129 Identities=18% Similarity=0.228 Sum_probs=94.4
Q ss_pred CCceeeEEEEEEEeec---CCcccceeEEEeecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeeccCCcc
Q 039348 475 GDVSDYLWYMTSVDTR---NISLKNMTLRVSTNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKKGLN 551 (651)
Q Consensus 475 ~D~tgYlwY~T~v~~~---~~~~~~~~Lrv~s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~g~n 551 (651)
++..|..||+++|.++ .+ ++..|+|+.+...+.|||||++||.+.+. + .+|+++++..|+.|.|
T Consensus 61 ~~~~G~~WYrr~f~lp~~~~g--k~v~L~Fegv~~~a~V~lNG~~vg~~~~~---------~--~~f~~DIT~~l~~G~~ 127 (604)
T PRK10150 61 RNYVGDVWYQREVFIPKGWAG--QRIVLRFGSVTHYAKVWVNGQEVMEHKGG---------Y--TPFEADITPYVYAGKS 127 (604)
T ss_pred cCCcccEEEEEEEECCcccCC--CEEEEEECcccceEEEEECCEEeeeEcCC---------c--cceEEeCchhccCCCc
Confidence 4578899999999997 23 67899999999999999999999999988 4 5799999988988865
Q ss_pred -EEEEEEeccCc---ccccC-------------ccc-ccccccccccEEEeccCCceec-------CC----ccceEEEE
Q 039348 552 -VISLLSVTVGL---ANYGA-------------FYD-LKPTGLINGGVLLNGKGNNSIN-------AT----TYQWSYKV 602 (651)
Q Consensus 552 -~LsiLv~nvG~---~NyG~-------------~~e-~~~kGI~~g~V~l~g~~~~~id-------ls----~~~W~y~v 602 (651)
+|.|.|.|.-. ...|. ..+ ....|| .++|.|..++...|+ +. ....+.++
T Consensus 128 n~L~V~v~n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI-~r~V~L~~~~~~~i~dv~v~~~~~~~~~~a~v~v~v 206 (604)
T PRK10150 128 VRITVCVNNELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGI-HRPVMLYTTPKTHIDDITVVTELAQDLNHASVDWSV 206 (604)
T ss_pred eEEEEEEecCCCcccCCCCccccCCccccccccccccccccCC-CceEEEEEcCCccCceEEEEeecCCcCceEEEEEEE
Confidence 99999976311 00011 122 468999 899999888876662 22 13344444
Q ss_pred Eeeec----eeeccCCCCC
Q 039348 603 GLNGE----AQQFHDPNSR 617 (651)
Q Consensus 603 gL~GE----~~~i~d~~g~ 617 (651)
-+.+. .+.|.+++|.
T Consensus 207 ~~~~~~~~~~~~l~~~~g~ 225 (604)
T PRK10150 207 ETNGDVDSVSVTLRDADGQ 225 (604)
T ss_pred EEcCCceEEEEEEECCCCC
Confidence 44432 4567777664
No 15
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.28 E-value=6.9e-06 Score=100.27 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=90.8
Q ss_pred eeEEEEEEEeecCC-ccc-ceeEEEeecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeeccCCccEEEEE
Q 039348 479 DYLWYMTSVDTRNI-SLK-NMTLRVSTNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKKGLNVISLL 556 (651)
Q Consensus 479 gYlwY~T~v~~~~~-~~~-~~~Lrv~s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~g~n~LsiL 556 (651)
+-.||+++|.++.+ .-+ +..|+|+.+...+.|||||++||.+.++ + .+|+|+++..|+.|.|+|.|.
T Consensus 120 ~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~---------~--~pfefDIT~~l~~G~N~L~V~ 188 (1027)
T PRK09525 120 PTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDS---------R--LPAEFDLSPFLRAGENRLAVM 188 (1027)
T ss_pred CeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEeecCC---------C--ceEEEEChhhhcCCccEEEEE
Confidence 45799999999821 003 6899999999999999999999999887 4 679999998899999999999
Q ss_pred EeccCcccccCccc-ccccccccccEEEeccCCceec-------C----CccceEEEEEeeec-------eeeccCCCC
Q 039348 557 SVTVGLANYGAFYD-LKPTGLINGGVLLNGKGNNSIN-------A----TTYQWSYKVGLNGE-------AQQFHDPNS 616 (651)
Q Consensus 557 v~nvG~~NyG~~~e-~~~kGI~~g~V~l~g~~~~~id-------l----s~~~W~y~vgL~GE-------~~~i~d~~g 616 (651)
|..----+|-+..+ .+..|| .++|.|.-+|...|+ + .++....++.+.+. .+.|+|+++
T Consensus 189 V~~~sdgs~~e~qd~w~~sGI-~R~V~L~~~p~~~I~d~~v~t~l~~~~~~a~v~v~v~~~~~~~~~~~v~~~l~d~~~ 266 (1027)
T PRK09525 189 VLRWSDGSYLEDQDMWRMSGI-FRDVSLLHKPTTQLSDFHITTELDDDFRRAVLEVEAQVNGELRDELRVTVQLWDGET 266 (1027)
T ss_pred EEecCCCCccccCCceeeccc-cceEEEEEcCCcEEeeeEEEeeccCccceEEEEEEEEEecCCCCcEEEEEEEEcCCC
Confidence 85322112212123 456899 899999988887762 2 23455555555431 445666654
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.20 E-value=4.7e-06 Score=86.30 Aligned_cols=117 Identities=21% Similarity=0.341 Sum_probs=89.4
Q ss_pred cCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHH
Q 039348 77 WNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKI 156 (651)
Q Consensus 77 Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i 156 (651)
|...||++|+|||+ .++++++.|+++||.| |..+.+ |.. ..|.|+...+ .+..++++++|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 332222 433 6899987432 345678888899998
Q ss_pred HHHHHhccccccCCCcEEEecccccccccc-------cccCcchHHHHHHHHHHHHhcCCCcCeEEecC
Q 039348 157 VNMCKEANLFASQGGPIILAQIENEYGNIM-------EKYGDAGKQYIKWCANMAVAQNISEPWIMCQQ 218 (651)
Q Consensus 157 ~~~l~~~~l~~~~gGpII~~QIENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~gi~vP~~~~~~ 218 (651)
+.+++ |.|..|+|=||--+.. ..+...+.+|+...-+.+++..-++.++.++-
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 88876 4588999999954321 01112346899999999999998999998863
No 17
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.19 E-value=2.3e-05 Score=83.09 Aligned_cols=158 Identities=17% Similarity=0.180 Sum_probs=91.1
Q ss_pred cccceeEEeeCCcEE--ECCEEEEEEEEEeeCCCC-----------CccchHHHHHHHHHcCCCEEEEccccCccCCcCc
Q 039348 19 SCLAIKVEYDANALI--IDGQRKVIISGSIHYPRS-----------TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRR 85 (651)
Q Consensus 19 ~~~~~~v~~d~~~~~--idG~~~~i~sG~~Hy~r~-----------~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G 85 (651)
++.-..|+..++.|+ .+|++|+|.+-.+.+.-. .++.|+.++..||++|+|||++|- ..|
T Consensus 5 ~~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp--- 77 (314)
T PF03198_consen 5 AAAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDP--- 77 (314)
T ss_dssp STTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------T---
T ss_pred hccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCC---
Confidence 345578899999998 799999999887765322 457899999999999999999973 223
Q ss_pred eeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCccccCCh--hHHHHHHHHHHHHHHHHHhc
Q 039348 86 EYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDND--IFKNEMQVFTTKIVNMCKEA 163 (651)
Q Consensus 86 ~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~--~y~~~~~~~~~~i~~~l~~~ 163 (651)
..|=++++++.+++|+||||..+. |...+-.++| .|-...-.-+.++++.++++
T Consensus 78 ------~~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y 133 (314)
T PF03198_consen 78 ------SKNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY 133 (314)
T ss_dssp ------TS--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-
T ss_pred ------CCCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccC
Confidence 247789999999999999998642 2223334455 55444334445566777755
Q ss_pred cccccCCCcEEEeccccccccccc--ccCcchHHHHHHHHHHHHhcCC-CcCeE
Q 039348 164 NLFASQGGPIILAQIENEYGNIME--KYGDAGKQYIKWCANMAVAQNI-SEPWI 214 (651)
Q Consensus 164 ~l~~~~gGpII~~QIENEyg~~~~--~~~~~~~~y~~~l~~~~~~~gi-~vP~~ 214 (651)
+ ++++.=+-||.-+... .-...-|+..+.+|+-.++.+. .+|+=
T Consensus 134 ~-------N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPVG 180 (314)
T PF03198_consen 134 D-------NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPVG 180 (314)
T ss_dssp T-------TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EE
T ss_pred C-------ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcee
Confidence 4 8999999999865321 0011335666666666777777 45653
No 18
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.15 E-value=7.2e-06 Score=100.17 Aligned_cols=99 Identities=20% Similarity=0.194 Sum_probs=79.7
Q ss_pred eeEEEEEEEeec---CCcccceeEEEeecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeeccCCccEEEE
Q 039348 479 DYLWYMTSVDTR---NISLKNMTLRVSTNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKKGLNVISL 555 (651)
Q Consensus 479 gYlwY~T~v~~~---~~~~~~~~Lrv~s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~g~n~Lsi 555 (651)
+--||+++|.++ ++ ++..|+|+.+...+.|||||++||.+.++ + .+|+|+++..|+.|.|+|.|
T Consensus 109 ~~g~Yrr~F~lp~~~~g--krv~L~FeGV~s~a~VwvNG~~VG~~~g~---------~--~pfefDIT~~l~~G~N~LaV 175 (1021)
T PRK10340 109 PTGAYQRTFTLSDGWQG--KQTIIKFDGVETYFEVYVNGQYVGFSKGS---------R--LTAEFDISAMVKTGDNLLCV 175 (1021)
T ss_pred CeEEEEEEEEeCccccc--CcEEEEECccceEEEEEECCEEeccccCC---------C--ccEEEEcchhhCCCccEEEE
Confidence 345999999998 23 67899999999999999999999999987 4 57999999889999999999
Q ss_pred EEeccCcccccCccc-ccccccccccEEEeccCCcee
Q 039348 556 LSVTVGLANYGAFYD-LKPTGLINGGVLLNGKGNNSI 591 (651)
Q Consensus 556 Lv~nvG~~NyG~~~e-~~~kGI~~g~V~l~g~~~~~i 591 (651)
.|.+..--.|-+..+ ....|| .++|.|.-+|...|
T Consensus 176 ~V~~~~d~s~le~qd~w~~sGI-~R~V~L~~~p~~~I 211 (1021)
T PRK10340 176 RVMQWADSTYLEDQDMWWLAGI-FRDVYLVGKPLTHI 211 (1021)
T ss_pred EEEecCCCCccccCCccccccc-cceEEEEEeCCceE
Confidence 997543222222122 357999 89999998888776
No 19
>TIGR03356 BGL beta-galactosidase.
Probab=97.92 E-value=1.2e-05 Score=89.70 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=79.2
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCc-CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPR-RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHN 132 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 132 (651)
..|+++|+.||++|+|++++-|.|...+|. +|++|.+|....+++|+.|.++||.+|+-.= .-.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 458999999999999999999999999999 7999999989999999999999999887642 2258999976
Q ss_pred CCCCccccCChhHHHHHHHHHHHHHHHHHh
Q 039348 133 TPGIQLRTDNDIFKNEMQVFTTKIVNMCKE 162 (651)
Q Consensus 133 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 162 (651)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5442 2366666667777777777763
No 20
>PLN02705 beta-amylase
Probab=97.85 E-value=4.1e-05 Score=86.50 Aligned_cols=81 Identities=19% Similarity=0.377 Sum_probs=63.1
Q ss_pred ccchHHHHHHHHHcCCCEEEEccccCccCC-cCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCC-----CC
Q 039348 53 PEMWPDLIQKAKDGGLDAIETYIFWNVHEP-RRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYG-----GF 126 (651)
Q Consensus 53 ~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G~ 126 (651)
++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| -.+++++|+++||++..-..=--||- +-| -|
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGG-NVGD~~~IPL 342 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGG-NASGNVMISL 342 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCC-CCCCcccccC
Confidence 344678899999999999999999999998 699999996 67889999999999643322234554 222 28
Q ss_pred Cccccc----CCCCc
Q 039348 127 PMWLHN----TPGIQ 137 (651)
Q Consensus 127 P~WL~~----~p~i~ 137 (651)
|.|+.+ +|+|.
T Consensus 343 P~WV~e~g~~nPDif 357 (681)
T PLN02705 343 PQWVLEIGKDNQDIF 357 (681)
T ss_pred CHHHHHhcccCCCce
Confidence 999985 56764
No 21
>PLN00197 beta-amylase; Provisional
Probab=97.84 E-value=4.2e-05 Score=85.82 Aligned_cols=82 Identities=20% Similarity=0.480 Sum_probs=63.9
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCC-cCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCC-----C
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEP-RRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYG-----G 125 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G 125 (651)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| -.+++++++++||++..-..=--||- +-| -
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 3445688999999999999999999999998 799999996 67889999999999753322233444 222 2
Q ss_pred CCccccc----CCCCc
Q 039348 126 FPMWLHN----TPGIQ 137 (651)
Q Consensus 126 ~P~WL~~----~p~i~ 137 (651)
||.|+.+ +|+|.
T Consensus 201 LP~WV~~~g~~dpDif 216 (573)
T PLN00197 201 LPKWVVEEVDKDPDLA 216 (573)
T ss_pred CCHHHHHhhccCCCce
Confidence 8999975 57764
No 22
>PLN02905 beta-amylase
Probab=97.83 E-value=5.4e-05 Score=85.83 Aligned_cols=112 Identities=21% Similarity=0.480 Sum_probs=80.1
Q ss_pred chHHHHHHHHHcCCCEEEEccccCccCC-cCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCC-----CCCc
Q 039348 55 MWPDLIQKAKDGGLDAIETYIFWNVHEP-RRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYG-----GFPM 128 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G~P~ 128 (651)
.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| -.+++++++++||++..-..=--||- +-| -||.
T Consensus 287 al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IPLP~ 362 (702)
T PLN02905 287 GLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIPLPH 362 (702)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCCH
Confidence 3577899999999999999999999998 799999996 77889999999999753322233544 222 2899
Q ss_pred cccc----CCCCcc------------------------ccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecc
Q 039348 129 WLHN----TPGIQL------------------------RTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQI 178 (651)
Q Consensus 129 WL~~----~p~i~~------------------------Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI 178 (651)
|+.+ +|+|.+ ||--+.|.+.|+.|-.++.+.|. +|.|.-+||
T Consensus 363 WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI~V 432 (702)
T PLN02905 363 WVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISMVEV 432 (702)
T ss_pred HHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEEEEe
Confidence 9975 577643 11113466666655555544443 467888888
No 23
>PLN02803 beta-amylase
Probab=97.80 E-value=5.9e-05 Score=84.48 Aligned_cols=80 Identities=19% Similarity=0.489 Sum_probs=62.2
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCC-cCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCC-----CCC
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEP-RRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYG-----GFP 127 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G~P 127 (651)
+.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| -.+++++++++||++..-..=--||- +-| -||
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpLP 182 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCC
Confidence 44577899999999999999999999998 599999996 77889999999999753322233443 112 289
Q ss_pred ccccc----CCCCc
Q 039348 128 MWLHN----TPGIQ 137 (651)
Q Consensus 128 ~WL~~----~p~i~ 137 (651)
.|+.+ +|+|.
T Consensus 183 ~WV~e~~~~~pDi~ 196 (548)
T PLN02803 183 PWVLEEMSKNPDLV 196 (548)
T ss_pred HHHHHhhhcCCCce
Confidence 99975 57764
No 24
>PLN02801 beta-amylase
Probab=97.80 E-value=6.2e-05 Score=83.93 Aligned_cols=82 Identities=27% Similarity=0.581 Sum_probs=63.4
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCC-cCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCC-----C
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEP-RRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYG-----G 125 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G 125 (651)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| -.+++++++++||++..-..=--||- +-| -
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG-NVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4455688999999999999999999999998 699999996 77889999999999743322233443 112 2
Q ss_pred CCccccc----CCCCc
Q 039348 126 FPMWLHN----TPGIQ 137 (651)
Q Consensus 126 ~P~WL~~----~p~i~ 137 (651)
+|.|+.+ +|+|.
T Consensus 111 LP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 111 IPQWVRDVGDSDPDIF 126 (517)
T ss_pred CCHHHHHhhccCCCce
Confidence 8999985 56663
No 25
>PLN02161 beta-amylase
Probab=97.66 E-value=0.00015 Score=80.81 Aligned_cols=81 Identities=20% Similarity=0.450 Sum_probs=62.5
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCC-cCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCC-----CCC
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEP-RRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYG-----GFP 127 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp-~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G~P 127 (651)
+.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| -.+++++++++||++..-..=--|+- +-| -||
T Consensus 117 ~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpLP 192 (531)
T PLN02161 117 KALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISLP 192 (531)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccCC
Confidence 33567899999999999999999999998 799999996 77889999999999753332233433 112 289
Q ss_pred ccccc----CCCCcc
Q 039348 128 MWLHN----TPGIQL 138 (651)
Q Consensus 128 ~WL~~----~p~i~~ 138 (651)
.|+.+ +|+|.+
T Consensus 193 ~WV~~~g~~~pDi~f 207 (531)
T PLN02161 193 LWIREIGDVNKDIYY 207 (531)
T ss_pred HHHHhhhccCCCceE
Confidence 99985 577643
No 26
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.59 E-value=0.00031 Score=74.46 Aligned_cols=225 Identities=19% Similarity=0.289 Sum_probs=110.4
Q ss_pred CCcEE-ECCEEEEEEEEEeeC---CCCCccchHHHHHHHHHcCCCEEEEccc--cCcc--------CC----cCceeecc
Q 039348 29 ANALI-IDGQRKVIISGSIHY---PRSTPEMWPDLIQKAKDGGLDAIETYIF--WNVH--------EP----RRREYDFS 90 (651)
Q Consensus 29 ~~~~~-idG~~~~i~sG~~Hy---~r~~~~~W~~~l~k~Ka~G~NtV~~yv~--Wn~h--------Ep----~~G~fdF~ 90 (651)
++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+-|||+|++=++ |..+ .| .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45666 7999999998 5544 3567899999999999999999999876 4422 12 12237776
Q ss_pred Cc-----hhHHHHHHHHHHcCCEEEEec---CceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHh
Q 039348 91 GN-----LDFVKFFKLVQDAGLYAILRI---GPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKE 162 (651)
Q Consensus 91 g~-----~dL~~fl~la~~~GL~Vilr~---GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 162 (651)
.. ..|++.|+.|.+.||.+.|-| +||.-+-|-.| |.. | =.+.+++|.+.|++++++
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~~~------m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--PNI------M--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------TTS------S---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--ccC------C--------CHHHHHHHHHHHHHHHhc
Confidence 53 489999999999999985432 34443444433 111 1 136788999999999996
Q ss_pred ccccccCCCcEEEecccccccccccccCcchHHHHHHHHHHHHhcCCCcCe-EEecCC-CCC-----Cccc--ccC-CCc
Q 039348 163 ANLFASQGGPIILAQIENEYGNIMEKYGDAGKQYIKWCANMAVAQNISEPW-IMCQQS-DAP-----EPMI--NTC-NGF 232 (651)
Q Consensus 163 ~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~vP~-~~~~~~-~~~-----~~v~--~t~-ng~ 232 (651)
.+ +|| |=|-||+ . ......++.+.+.+.+++..-.-+. ++..+. ..+ .+-+ ..+ .|.
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 53 466 6689999 1 1235567777777777665432232 222211 011 0101 111 122
Q ss_pred cc---CCC-------C-CCCCCCCceeee-cccccccccCCCCCCCCHHHHHHHHHHHHHcCC
Q 039348 233 YC---DQF-------K-PNNPKSPKMWTE-NWTGWFKLWGGRDPQRTAEDLAFSVARFFQNGG 283 (651)
Q Consensus 233 ~~---~~~-------~-~~~~~~P~~~~E-~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 283 (651)
.. +.+ . ...|.+|.+..| .+.|--..+.+.....+++++-...=.-+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 11 111 1 346889999999 344543333223345677777665444444555
No 27
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.00037 Score=71.99 Aligned_cols=130 Identities=21% Similarity=0.181 Sum_probs=87.4
Q ss_pred cCCceeeEEEEEEEeec-C---CcccceeEEEeecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeeccCC
Q 039348 474 SGDVSDYLWYMTSVDTR-N---ISLKNMTLRVSTNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKKG 549 (651)
Q Consensus 474 T~D~tgYlwY~T~v~~~-~---~~~~~~~Lrv~s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~g 549 (651)
-+|++|.+||++++.++ + +.-++-+||+.|++-.|.|+|||.-+-+|.++ + .+|+-++.-.+..|
T Consensus 83 lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg---------~--lP~~~~is~~~~~g 151 (297)
T KOG2024|consen 83 LRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGG---------H--LPLEPDISALVFFG 151 (297)
T ss_pred cccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceeecccccC---------c--cccchhhhhhhhcc
Confidence 36899999999999998 1 11167899999999999999999999999887 3 57776655433333
Q ss_pred c-cEEEE-EEeccCcccccCccc-ccccccccccEEEeccCCceec-------CC--ccceEEEEEeeeceeeccCCCCC
Q 039348 550 L-NVISL-LSVTVGLANYGAFYD-LKPTGLINGGVLLNGKGNNSIN-------AT--TYQWSYKVGLNGEAQQFHDPNSR 617 (651)
Q Consensus 550 ~-n~Lsi-Lv~nvG~~NyG~~~e-~~~kGI~~g~V~l~g~~~~~id-------ls--~~~W~y~vgL~GE~~~i~d~~g~ 617 (651)
. +.++- |....|-+++- || ++|+|+ .+.|.++..|..+|+ ++ ...=.|.++..|-.++..+..+.
T Consensus 152 ~~~~~dn~L~~~t~~~~~~--~dffnYag~-~~sv~l~t~p~vyi~~~~v~t~l~~~~~~a~~~v~~~~~~~~~~~~~~~ 228 (297)
T KOG2024|consen 152 PLPAIDNNLLSWTGPNSFC--FDFFNYAGE-QRSVCLYTTPVVYIEDITVTTGLPHDSGCASYHVGDGGVGVQMQEGPRR 228 (297)
T ss_pred ccccccCcccccccCCccc--ccCCCchhh-heeeeeccCCeEEecCcceeeccccCCcceeEeecccceeeeeccccce
Confidence 2 10000 11222333322 45 899999 899999999988874 11 24455666666655555554443
No 28
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.31 E-value=0.00028 Score=77.33 Aligned_cols=113 Identities=21% Similarity=0.407 Sum_probs=71.7
Q ss_pred hHHHHHHHHHcCCCEEEEccccCccCCc-CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeee----cCCCCCCccc
Q 039348 56 WPDLIQKAKDGGLDAIETYIFWNVHEPR-RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAE----WNYGGFPMWL 130 (651)
Q Consensus 56 W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aE----w~~GG~P~WL 130 (651)
-+..|+++|++|++.|.+.|.|...|.. |++|||+| -+++.+++++.||++.+-..=--|+- .-+=-||.|+
T Consensus 18 ~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~Wv 94 (402)
T PF01373_consen 18 LEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSWV 94 (402)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HHH
T ss_pred HHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHHH
Confidence 4678999999999999999999999997 99999995 77889999999999754322233422 1111379999
Q ss_pred cc---CCCCcc--cc------------CChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecc
Q 039348 131 HN---TPGIQL--RT------------DNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQI 178 (651)
Q Consensus 131 ~~---~p~i~~--Rt------------~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI 178 (651)
.+ ..+|.+ |+ .... ++.-+.|++.....++ +++ +.|..+||
T Consensus 95 ~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 95 WEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 74 224422 11 1112 4555556666666665 332 57888887
No 29
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.30 E-value=0.00045 Score=74.25 Aligned_cols=158 Identities=14% Similarity=0.225 Sum_probs=110.5
Q ss_pred EEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEc--cccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCceee
Q 039348 41 IISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETY--IFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVC 118 (651)
Q Consensus 41 i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~y--v~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~ 118 (651)
.+|..++..+...+. ..+.+-..-||.|..- .-|...||.+|+|||+ ..+++++.|+++||.|---+ -+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv- 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV- 81 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE-
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE-
Confidence 688888877764432 3444555679988875 6699999999999999 89999999999999985321 11
Q ss_pred eecCCCCCCcccccCCCCccccC-ChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEeccccccccccc---------c
Q 039348 119 AEWNYGGFPMWLHNTPGIQLRTD-NDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIME---------K 188 (651)
Q Consensus 119 aEw~~GG~P~WL~~~p~i~~Rt~-d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~---------~ 188 (651)
|.. ..|.|+...+.. ... .+..++.+++++++++.++++. |.|..|=|=||-=.... .
T Consensus 82 --W~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 82 --WHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp --ESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred --Ecc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCChh
Confidence 433 789999864110 000 1247888999999998888721 78999999999643211 1
Q ss_pred cCcchHHHHHHHHHHHHhcCCCcCeEEecCC
Q 039348 189 YGDAGKQYIKWCANMAVAQNISEPWIMCQQS 219 (651)
Q Consensus 189 ~~~~~~~y~~~l~~~~~~~gi~vP~~~~~~~ 219 (651)
+...+.+|+..+-++|++..-++.+|.++-+
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 2224578999999999998888999998853
No 30
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.12 E-value=0.0018 Score=69.99 Aligned_cols=137 Identities=21% Similarity=0.288 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCCCEEEEccccCccCCcC-ceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc-CC
Q 039348 57 PDLIQKAKDGGLDAIETYIFWNVHEPRR-REYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHN-TP 134 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~-G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~-~p 134 (651)
+|.++-+|+.|+|.||.=| | +.|.. |..|.+ +..++.+.|+++||.|+|.+- |- --|...| ++ .|
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS-D~WaDPg-----~Q~~P 93 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS-DFWADPG-----KQNKP 93 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS-SS--BTT-----B-B--
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc-CCCCCCC-----CCCCC
Confidence 6899999999999999987 4 45555 666666 677777888899999999863 11 1121111 00 11
Q ss_pred CCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEeccccccccc-ccccCc--c---hHHHHHHHHHHHHhcC
Q 039348 135 GIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNI-MEKYGD--A---GKQYIKWCANMAVAQN 208 (651)
Q Consensus 135 ~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~-~~~~~~--~---~~~y~~~l~~~~~~~g 208 (651)
.--.-.+-..-.+++..|.+.+++.|++. |=.+=||||-||...- -+..+. . -.++++...+..|+.+
T Consensus 94 ~aW~~~~~~~l~~~v~~yT~~vl~~l~~~------G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~ 167 (332)
T PF07745_consen 94 AAWANLSFDQLAKAVYDYTKDVLQALKAA------GVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD 167 (332)
T ss_dssp TTCTSSSHHHHHHHHHHHHHHHHHHHHHT------T--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcC
Confidence 11001133567789999999999999965 4467799999997531 122221 1 1344445556677655
Q ss_pred CCcC
Q 039348 209 ISEP 212 (651)
Q Consensus 209 i~vP 212 (651)
-.+.
T Consensus 168 p~~k 171 (332)
T PF07745_consen 168 PNIK 171 (332)
T ss_dssp STSE
T ss_pred CCCc
Confidence 5544
No 31
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.003 Score=67.29 Aligned_cols=133 Identities=17% Similarity=0.263 Sum_probs=101.1
Q ss_pred HHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCccccCC
Q 039348 63 AKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDN 142 (651)
Q Consensus 63 ~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d 142 (651)
.|+++.=|-+.-.=|+..||++|.|+|+ --+++.+.|+++||.+--- +.| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhGH--tLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLHGH--TLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeeccc--eee---ecc-cCCchhhccc-----cCh
Confidence 4555554555566799999999999999 5889999999999976321 222 433 5899997632 244
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccc-------cccCcchHHHHHHHHHHHHhcCCCcCeEE
Q 039348 143 DIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIM-------EKYGDAGKQYIKWCANMAVAQNISEPWIM 215 (651)
Q Consensus 143 ~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~gi~vP~~~ 215 (651)
+..++.+++++..++.+++ + -|+.|-|=||-=..+ +..+..+.+|+++.-+.|++..-+.-++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk--g-------~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK--G-------SVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc--C-------ceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7889999999999999998 3 499999999963311 12224678999999999999888888888
Q ss_pred ecC
Q 039348 216 CQQ 218 (651)
Q Consensus 216 ~~~ 218 (651)
|+-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 875
No 32
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.02 E-value=0.00025 Score=79.70 Aligned_cols=97 Identities=15% Similarity=0.223 Sum_probs=72.6
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCc--CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPR--RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLH 131 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 131 (651)
..|+++|+.||++|+|+.+.-+.|...+|. +|++|-+|...-+++|+.+.++||..++-. -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 458999999999999999999999999999 699999999999999999999999977653 2446999998
Q ss_pred cCCCCccccCChhHHHHHHHHHHHHHHHHHh
Q 039348 132 NTPGIQLRTDNDIFKNEMQVFTTKIVNMCKE 162 (651)
Q Consensus 132 ~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 162 (651)
+.-+- .++...+.-.+|.+.+++.+.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 74332 2355666666777777777763
No 33
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.01 E-value=0.019 Score=65.53 Aligned_cols=335 Identities=16% Similarity=0.260 Sum_probs=166.0
Q ss_pred EEEEEEEEEeeC------CCCCccchHHHHHHH---HHcCCCEEEEccc---cCccC----CcCceee---ccC-c---h
Q 039348 37 QRKVIISGSIHY------PRSTPEMWPDLIQKA---KDGGLDAIETYIF---WNVHE----PRRREYD---FSG-N---L 93 (651)
Q Consensus 37 ~~~~i~sG~~Hy------~r~~~~~W~~~l~k~---Ka~G~NtV~~yv~---Wn~hE----p~~G~fd---F~g-~---~ 93 (651)
|++.=|+|++=- .+.+++.=++.|+.+ +-+|++.+|+.|- .+.++ ..|+.|+ |+= + .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~ 153 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKK 153 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHT
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchh
Confidence 455567887732 233443333334333 4589999998875 22221 1233222 221 1 1
Q ss_pred hHHHHHHHHHHc--CCEEEEecCceeeeecCCCCCCcccccCCCC----ccc-cCChhHHHHHHHHHHHHHHHHHhcccc
Q 039348 94 DFVKFFKLVQDA--GLYAILRIGPYVCAEWNYGGFPMWLHNTPGI----QLR-TDNDIFKNEMQVFTTKIVNMCKEANLF 166 (651)
Q Consensus 94 dL~~fl~la~~~--GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i----~~R-t~d~~y~~~~~~~~~~i~~~l~~~~l~ 166 (651)
.+..+|+.|++. +|+++.-| | ..|+|++....+ .++ ...+.|.++..+|+.+-++.+++++
T Consensus 154 ~~ip~ik~a~~~~~~lki~aSp-------W---SpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~G-- 221 (496)
T PF02055_consen 154 YKIPLIKEALAINPNLKIFASP-------W---SPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEG-- 221 (496)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--
T ss_pred hHHHHHHHHHHhCCCcEEEEec-------C---CCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCC--
Confidence 234678877774 57777665 5 389999874333 244 2346788888999999888888554
Q ss_pred ccCCCcEEEeccccccccc-------c-cccC-cchHHHHH-HHHHHHHhcCC--CcCeEEecC--CCCCC---ccccc-
Q 039348 167 ASQGGPIILAQIENEYGNI-------M-EKYG-DAGKQYIK-WCANMAVAQNI--SEPWIMCQQ--SDAPE---PMINT- 228 (651)
Q Consensus 167 ~~~gGpII~~QIENEyg~~-------~-~~~~-~~~~~y~~-~l~~~~~~~gi--~vP~~~~~~--~~~~~---~v~~t- 228 (651)
=||-++-+.||-... . +.+. +..++|++ .|.-.+++.|+ ++-+++.+. ...|+ .++..
T Consensus 222 ----I~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~ 297 (496)
T PF02055_consen 222 ----IPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDP 297 (496)
T ss_dssp ------ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSH
T ss_pred ----CCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcCh
Confidence 489999999997641 1 1111 12467776 48888999877 777776653 22331 12211
Q ss_pred ----C-C--Cccc--C-CCC-------CCCCCCCceeeecccccccccCCCCCCC---CHHHHHHHHHHHHHcCCeeeee
Q 039348 229 ----C-N--GFYC--D-QFK-------PNNPKSPKMWTENWTGWFKLWGGRDPQR---TAEDLAFSVARFFQNGGVLNNY 288 (651)
Q Consensus 229 ----~-n--g~~~--~-~~~-------~~~~~~P~~~~E~~~Gwf~~wG~~~~~~---~~~~~~~~~~~~l~~g~s~~n~ 288 (651)
+ . +++| + ... ...|++.++.||-..|.. .|+...... .++..+..+..-+..+++ ++
T Consensus 298 ~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--gw 374 (496)
T PF02055_consen 298 EAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--GW 374 (496)
T ss_dssp HHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--EE
T ss_pred hhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--ee
Confidence 0 1 3344 1 111 235888999999866531 122111111 133444444455556643 22
Q ss_pred eEe------eccCCCCCC-CCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHHhhhhccccCCcceeeec-cCceeE
Q 039348 289 YMY------HGGTNFGRT-AGGPYIATSYDYNAPLDEYGNLNQPKWGHLKQLHASIKQAEKFLTNGTVETKSV-MNFVDL 360 (651)
Q Consensus 289 YM~------hGGTNfG~~-~G~~~~~tSYDy~Apl~E~G~~~~pKy~~lr~l~~fl~~~~~~l~~~~p~~~~~-g~~~~~ 360 (651)
-++ .||-|++.- ..++.++.. +. +|. .++|.|..|....+|++--...+-. .... +.++++
T Consensus 375 ~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~~--~~~p~yY~~gHfSKFV~PGa~RI~s----t~~~~~~~l~~ 443 (496)
T PF02055_consen 375 IDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GEF--YKQPEYYAMGHFSKFVRPGAVRIGS----TSSSSDSGLEA 443 (496)
T ss_dssp EEEESEBETTS---TT---B--SEEEEG-GG----TEE--EE-HHHHHHHHHHTTS-TT-EEEEE----EESSSTTTEEE
T ss_pred eeeeeecCCCCCCcccCCCCCceeEEEc-CC----CeE--EEcHHHHHHHHHhcccCCCCEEEEe----eccCCCCceeE
Confidence 222 488887531 112222111 11 222 2478999999999887743322211 1111 124677
Q ss_pred EEEeeCCCCceEEEEecCCCCce-eEEEeCCc--c----eeeecCceEE
Q 039348 361 TKFTLNATGERFCMLSNSDNTGD-YTADLGED--G----KFFVPAWSVT 402 (651)
Q Consensus 361 ~~y~~~~~g~~~~Fl~N~~~~~~-~~v~~~~~--g----~~~lp~~sv~ 402 (651)
..|.+++ |+-++-|.|..+.+. .+|++++. + .++||+.|+.
T Consensus 444 vAF~nPD-Gs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~~ 491 (496)
T PF02055_consen 444 VAFLNPD-GSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSIV 491 (496)
T ss_dssp EEEEETT-SEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTEE
T ss_pred EEEECCC-CCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCceE
Confidence 8888888 777777777654443 35666643 2 5888887653
No 34
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.80 E-value=0.0043 Score=68.87 Aligned_cols=115 Identities=13% Similarity=0.115 Sum_probs=73.5
Q ss_pred Cccch-----HHHHHHHHHcCCCEEEEccccCccCCcC----ceeeccCchhHHHHHHHHHHcCCEEEEec----Cceee
Q 039348 52 TPEMW-----PDLIQKAKDGGLDAIETYIFWNVHEPRR----REYDFSGNLDFVKFFKLVQDAGLYAILRI----GPYVC 118 (651)
Q Consensus 52 ~~~~W-----~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~----G~fdF~g~~dL~~fl~la~~~GL~Vilr~----GPyi~ 118 (651)
...-| ++.+..||.+|||+||+++.|..+++.. ...+=.-..-|++.|+.|++.||+|+|-. |...|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 45568 8999999999999999999944446542 22212222378999999999999999883 22222
Q ss_pred eecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccc
Q 039348 119 AEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGN 184 (651)
Q Consensus 119 aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~ 184 (651)
-| ..|.... . ....+..++..+..+.|+.++++ .-.||++|+=||--.
T Consensus 146 ~~------~s~~~~~--~---~~~~~~~~~~~~~w~~ia~~f~~-------~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSD--Y---KEENENVEATIDIWKFIANRFKN-------YDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccc--c---cccchhHHHHHHHHHHHHHhccC-------CCceeeeeeecCCcc
Confidence 11 2222210 0 00233445555556666666663 448999999999863
No 35
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.79 E-value=0.0016 Score=73.87 Aligned_cols=95 Identities=14% Similarity=0.186 Sum_probs=74.8
Q ss_pred chHHHHHHHHHcCCCEEEEccccCccCCc--CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 039348 55 MWPDLIQKAKDGGLDAIETYIFWNVHEPR--RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHN 132 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 132 (651)
.|+++|+.||++|+|+-++-|-|....|. +|++|-+|...-+++|+.+.++||..++-. -.=.+|.||.+
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 58999999999999999999999999997 567898899999999999999999987653 12258999976
Q ss_pred C-CCCccccCChhHHHHHHHHHHHHHHHHH
Q 039348 133 T-PGIQLRTDNDIFKNEMQVFTTKIVNMCK 161 (651)
Q Consensus 133 ~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 161 (651)
. -+- .++...++-.+|.+.+++.++
T Consensus 142 ~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 142 QYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 3 332 345555555666666666665
No 36
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.74 E-value=0.0015 Score=73.84 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=72.0
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCc--CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPR--RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLH 131 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 131 (651)
..|+++++.||++|+|+.++-+-|...+|. ++++|-+|....+++|+.|.++||..++-. ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 347999999999999999999999999997 556788888899999999999999987653 1236899997
Q ss_pred cC-CCCccccCChhHHHHHHHHHHHHHHHHH
Q 039348 132 NT-PGIQLRTDNDIFKNEMQVFTTKIVNMCK 161 (651)
Q Consensus 132 ~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 161 (651)
.. -+- .++...++..+|.+.+++.++
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 332 234444444444455555444
No 37
>PLN02998 beta-glucosidase
Probab=96.57 E-value=0.0023 Score=72.83 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=76.8
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCc-CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPR-RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHN 132 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 132 (651)
..|+++|+.||++|+|+-++-|-|...+|. .|.+|-+|...-+++|+.+.++||..++-.= -| .+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 358999999999999999999999999996 6788999999999999999999998665431 13 48999976
Q ss_pred C-CCCccccCChhHHHHHHHHHHHHHHHHH
Q 039348 133 T-PGIQLRTDNDIFKNEMQVFTTKIVNMCK 161 (651)
Q Consensus 133 ~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 161 (651)
. -+-.=|..=..|.++++..++++.++++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4432233334566666666666666665
No 38
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.52 E-value=0.031 Score=54.82 Aligned_cols=134 Identities=10% Similarity=0.072 Sum_probs=80.3
Q ss_pred CCCCccchHHHHHHHHHcCCCEEEEccccCccC-----Cc---CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeee
Q 039348 49 PRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHE-----PR---RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAE 120 (651)
Q Consensus 49 ~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hE-----p~---~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aE 120 (651)
-.++++.|+.+++.||++|+|+|=+= |...+ |. ++.|.-.....|+.+|++|++.||+|.+..+.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~----- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF----- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC-----
Confidence 46899999999999999999998431 22111 11 22333344568999999999999999988631
Q ss_pred cCCCCCCcccccCCCCccccCChhH-HHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCcchHHHHHH
Q 039348 121 WNYGGFPMWLHNTPGIQLRTDNDIF-KNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKQYIKW 199 (651)
Q Consensus 121 w~~GG~P~WL~~~p~i~~Rt~d~~y-~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~ 199 (651)
-|.|-.+ .|+.. .+..++...+|..+... ...+=+|=|-.|..... ....++.+.
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~yg~-------h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQRYGH-------HPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHHHcC-------CCCCceEEEecccCCcc----cchHHHHHH
Confidence 2333321 12222 12223344445554443 44677888888887542 234555666
Q ss_pred HHHHHHhcCCCcCe
Q 039348 200 CANMAVAQNISEPW 213 (651)
Q Consensus 200 l~~~~~~~gi~vP~ 213 (651)
|.+.+++.--+-|+
T Consensus 144 l~~~lk~~s~~~Pv 157 (166)
T PF14488_consen 144 LGKYLKQISPGKPV 157 (166)
T ss_pred HHHHHHHhCCCCCe
Confidence 66665554224443
No 39
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.49 E-value=0.0033 Score=71.09 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=74.3
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCc-CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPR-RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHN 132 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 132 (651)
..|+++++.||++|+|+-++-|.|.-.+|. .|.+|-+|...-+++|+.+.++||.-++-. -.=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 347999999999999999999999999997 578899999999999999999999866553 12258999986
Q ss_pred CCCCccccCChhHHHHHHHHHHHHHHHHH
Q 039348 133 TPGIQLRTDNDIFKNEMQVFTTKIVNMCK 161 (651)
Q Consensus 133 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 161 (651)
.-+-.=|..-..|.++++..++++.+ ++
T Consensus 126 ~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk 153 (469)
T PRK13511 126 NGDWLNRENIDHFVRYAEFCFEEFPE-VK 153 (469)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCC-CC
Confidence 53321122224455555555555555 44
No 40
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.48 E-value=0.0038 Score=70.80 Aligned_cols=100 Identities=18% Similarity=0.266 Sum_probs=76.2
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCc--CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPR--RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLH 131 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 131 (651)
..|+++|+.||++|+|+-+.-|-|...+|. +|++|=+|...-+++|+.+.++||..++-.= -| .+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-----H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-----HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCCHHHH
Confidence 458999999999999999999999999997 6678888999999999999999998665430 13 5899997
Q ss_pred cC-CCCccccCChhHHHHHHHHHHHHHHHHH
Q 039348 132 NT-PGIQLRTDNDIFKNEMQVFTTKIVNMCK 161 (651)
Q Consensus 132 ~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 161 (651)
+. -+-.=|..=..|.++++..++++.++++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 63 4432222234566666666666666665
No 41
>PLN02814 beta-glucosidase
Probab=96.39 E-value=0.0035 Score=71.50 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=76.2
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCc-CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPR-RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHN 132 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 132 (651)
..|+++++.||++|+|+-++-|-|.-.+|. +|.+|-+|...-+++|+.|.++||..++-.= -| -+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~---dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HY---DLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 358999999999999999999999999996 6889999999999999999999998765531 23 47999986
Q ss_pred C-CCCccccCChhHHHHHHHHHHHHHHHHH
Q 039348 133 T-PGIQLRTDNDIFKNEMQVFTTKIVNMCK 161 (651)
Q Consensus 133 ~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 161 (651)
. -+-.=|..-..|.++++..++++.++++
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 3 4432222234566666666666655554
No 42
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.38 E-value=0.004 Score=70.54 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=76.0
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCc--CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPR--RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLH 131 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~--~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 131 (651)
..|+++|+.||++|+|+-++-|-|.-.+|. +|.+|=+|...-+++|+.+.++||.-++-.= -| -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HF---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCCHHHH
Confidence 348999999999999999999999999997 5678888999999999999999998665531 13 4899997
Q ss_pred cC-CCCccccCChhHHHHHHHHHHHHHHHHH
Q 039348 132 NT-PGIQLRTDNDIFKNEMQVFTTKIVNMCK 161 (651)
Q Consensus 132 ~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 161 (651)
+. -+-.=|..-..|.++++..++++.++++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 53 4432233334566666666666666655
No 43
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.36 E-value=0.0047 Score=69.88 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=72.4
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCc-CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPR-RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHN 132 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 132 (651)
..|+++++.||++|+|+-++-|-|...+|. +|++|=+|...-+++|+.+.++||.-++-.= .=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~--------H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH--------HFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc--------CCCCcHHHHH
Confidence 348999999999999999999999999996 6788888999999999999999999776531 2248999986
Q ss_pred CCCCccccCChhHHHHHHHHHHHHHHHHH
Q 039348 133 TPGIQLRTDNDIFKNEMQVFTTKIVNMCK 161 (651)
Q Consensus 133 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 161 (651)
.-+- .++...++-.+|.+.+++.++
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 234434444444444444443
No 44
>PLN02849 beta-glucosidase
Probab=96.16 E-value=0.0064 Score=69.40 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=75.9
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCc-CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPR-RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHN 132 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 132 (651)
..|+++|+.||++|+|+-++-|-|.-.+|. .|.+|-+|...-+++|+.+.++||.-++-.= -| -+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HY---DHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CC---CCcHHHHH
Confidence 348999999999999999999999999996 4788989999999999999999999765531 13 48999976
Q ss_pred C-CCCccccCChhHHHHHHHHHHHHHHHHH
Q 039348 133 T-PGIQLRTDNDIFKNEMQVFTTKIVNMCK 161 (651)
Q Consensus 133 ~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 161 (651)
. -+-.=|..-..|.++++..++++.++++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4432222234566666666666666555
No 45
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.02 E-value=0.038 Score=58.52 Aligned_cols=117 Identities=17% Similarity=0.256 Sum_probs=78.9
Q ss_pred hHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHH---HcCCEEEEecCceeeeecCCCCCCccccc
Q 039348 56 WPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQ---DAGLYAILRIGPYVCAEWNYGGFPMWLHN 132 (651)
Q Consensus 56 W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~---~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 132 (651)
=.|.|+-+|+.|+|.|++=| |+..--..|.=-=.|+.|+.+.+++|+ ..||+|+|.+= +-+|-.+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwaD 132 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWAD 132 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhccC
Confidence 37899999999999999855 665544444433456789999888865 57999999861 2222221
Q ss_pred -----CCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccc-cccccC
Q 039348 133 -----TPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGN-IMEKYG 190 (651)
Q Consensus 133 -----~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~-~~~~~~ 190 (651)
.|.--.-.+-+.-.+++-.|.+..+..++++.. -+=||||.||-.+ +-++.|
T Consensus 133 PakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi------~pdmVQVGNEtn~gflwp~G 190 (403)
T COG3867 133 PAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGI------LPDMVQVGNETNGGFLWPDG 190 (403)
T ss_pred hhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCC------CccceEeccccCCceeccCC
Confidence 122111233455677888899999999996654 4569999999753 334445
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.45 E-value=0.077 Score=50.20 Aligned_cols=98 Identities=9% Similarity=0.083 Sum_probs=65.4
Q ss_pred HHHHHHHHcCCCEEEEccc----c-----CccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCc
Q 039348 58 DLIQKAKDGGLDAIETYIF----W-----NVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPM 128 (651)
Q Consensus 58 ~~l~k~Ka~G~NtV~~yv~----W-----n~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~ 128 (651)
+.++.+|++|+|+|.++.- | ..|.+.|+- . +.-|.++++.|++.||.|++|...- --|+-.---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L---~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL---K-RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC---C-cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4567899999999998432 2 345555543 1 2367999999999999999997544 23333345699
Q ss_pred ccccCCCCc-------------cccCChhHHHHHHHHHHHHHHHH
Q 039348 129 WLHNTPGIQ-------------LRTDNDIFKNEMQVFTTKIVNMC 160 (651)
Q Consensus 129 WL~~~p~i~-------------~Rt~d~~y~~~~~~~~~~i~~~l 160 (651)
|+..+++-+ .-+.|.+|++.+.+-+++|++.+
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 998644321 11235578887777777776654
No 47
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=95.28 E-value=6.2 Score=43.85 Aligned_cols=251 Identities=12% Similarity=0.094 Sum_probs=134.6
Q ss_pred CCCCCccchHHHHHHHHHcCCCEEEE-------ccccCccCCcCceeecc-CchhHHHHHHHHHHcCCEEEEecCceeee
Q 039348 48 YPRSTPEMWPDLIQKAKDGGLDAIET-------YIFWNVHEPRRREYDFS-GNLDFVKFFKLVQDAGLYAILRIGPYVCA 119 (651)
Q Consensus 48 y~r~~~~~W~~~l~k~Ka~G~NtV~~-------yv~Wn~hEp~~G~fdF~-g~~dL~~fl~la~~~GL~Vilr~GPyi~a 119 (651)
+.+..++.| ++.+|++|+..|-. +-.|.-.-..-..-+-. ++.-|.+|.+.|+++||++-+=-.+ -
T Consensus 78 p~~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~ 151 (384)
T smart00812 78 AEKFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---F 151 (384)
T ss_pred chhCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---H
Confidence 334556666 46789999986652 12254433211111111 3345778999999999987663322 2
Q ss_pred ecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCcchHHHHHH
Q 039348 120 EWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKQYIKW 199 (651)
Q Consensus 120 Ew~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~ 199 (651)
+|.. |.|....+.-..+.+.+.|.++++.|+.+|.+.|.++ ||-|+|- +...+.. ...--++.
T Consensus 152 DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~~~ 214 (384)
T smart00812 152 DWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRSKE 214 (384)
T ss_pred HhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcHHH
Confidence 6654 4443211111234456788888888888888888743 3445552 2111110 11112445
Q ss_pred HHHHHHhcCCCc-CeEEecCCCCCCcccccCCCcc--c-CCCCCCC-CCCCce-eeecccccccccCC-CCCCCCHHHHH
Q 039348 200 CANMAVAQNISE-PWIMCQQSDAPEPMINTCNGFY--C-DQFKPNN-PKSPKM-WTENWTGWFKLWGG-RDPQRTAEDLA 272 (651)
Q Consensus 200 l~~~~~~~gi~v-P~~~~~~~~~~~~v~~t~ng~~--~-~~~~~~~-~~~P~~-~~E~~~Gwf~~wG~-~~~~~~~~~~~ 272 (651)
+.++++++.-+. -.+.++... ... + ..|.+ | +...+.. ...|-- |+=.-.+|+-+-+. ....++++++.
T Consensus 215 l~~~~~~~qP~~~~vvvn~R~~-~~~--~-~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li 290 (384)
T smart00812 215 FLAWLYNLSPVKDTVVVNDRWG-GTG--C-KHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELI 290 (384)
T ss_pred HHHHHHHhCCCCceEEEEcccc-ccC--C-CCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHH
Confidence 666666654432 012222210 000 0 00111 1 1111110 011111 11111255554443 23467899999
Q ss_pred HHHHHHHHcCCeeeeeeEeeccCCCCCCCCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHHhhhhccccCCcce
Q 039348 273 FSVARFFQNGGVLNNYYMYHGGTNFGRTAGGPYIATSYDYNAPLDEYGNLNQPKWGHLKQLHASIKQAEKFLTNGTVE 350 (651)
Q Consensus 273 ~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pKy~~lr~l~~fl~~~~~~l~~~~p~ 350 (651)
..+....++|++++ +| -+-+.+|.+..+.-..|+++...|+...+.+..+.|.
T Consensus 291 ~~l~~~Vsk~GnlL-------------LN------------VgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr~~ 343 (384)
T smart00812 291 RDLVDIVSKGGNLL-------------LN------------VGPKADGTIPEEEEERLLEIGKWLKVNGEAIYGTRPW 343 (384)
T ss_pred HHHhhhcCCCceEE-------------Ec------------cCCCCCCCCCHHHHHHHHHHHHHHHhCCceeecCCCC
Confidence 99999999998763 22 1335678888888899999999999998888777654
No 48
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.09 E-value=0.031 Score=62.69 Aligned_cols=100 Identities=21% Similarity=0.350 Sum_probs=73.0
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCcCce--eeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPRRRE--YDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLH 131 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~--fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 131 (651)
..++++++.||+||+|+.|+-|-|...-|..+. .+=.|...-+++++.|.++|+.-++-.- -| -+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hf---d~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HF---DLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCcHHHh
Confidence 347899999999999999999999999997654 8888999999999999999999776531 12 3799998
Q ss_pred cC-CCCccccCChhHHHHHHHHHHHHHHHHH
Q 039348 132 NT-PGIQLRTDNDIFKNEMQVFTTKIVNMCK 161 (651)
Q Consensus 132 ~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 161 (651)
+. -|-.=|..=..|.++++-.+++..+.++
T Consensus 131 ~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 131 KPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred hccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 74 3432233334454444444444444444
No 49
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=93.97 E-value=19 Score=43.55 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=42.6
Q ss_pred cchHHHHHHHHHcCCCEEEEc-cc-------cCccCC---cCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 54 EMWPDLIQKAKDGGLDAIETY-IF-------WNVHEP---RRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~y-v~-------Wn~hEp---~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
+.|++.|..+|++|+|+|++- |+ |..+-. .+ .-.|....+|.+||+.|+++||.|||..
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 347888999999999999963 32 332210 00 1134556799999999999999999874
No 50
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.72 E-value=2.4 Score=49.78 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=44.8
Q ss_pred EeeCCCCCc-cchHH---H-HHHHHHcCCCEEEE-ccccCccCC----cCce-----eeccCchhHHHHHHHHHHcCCEE
Q 039348 45 SIHYPRSTP-EMWPD---L-IQKAKDGGLDAIET-YIFWNVHEP----RRRE-----YDFSGNLDFVKFFKLVQDAGLYA 109 (651)
Q Consensus 45 ~~Hy~r~~~-~~W~~---~-l~k~Ka~G~NtV~~-yv~Wn~hEp----~~G~-----fdF~g~~dL~~fl~la~~~GL~V 109 (651)
|+|..-..+ -.++. . |.-+|++|+|+|.+ +|+..-... .+-. -.|.+..+|.+||+.|+++||.|
T Consensus 143 e~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~V 222 (613)
T TIGR01515 143 ELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGV 222 (613)
T ss_pred EEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEE
Confidence 566543322 23433 3 36679999999998 676532111 1000 13445679999999999999999
Q ss_pred EEec
Q 039348 110 ILRI 113 (651)
Q Consensus 110 ilr~ 113 (651)
||..
T Consensus 223 ilD~ 226 (613)
T TIGR01515 223 ILDW 226 (613)
T ss_pred EEEe
Confidence 9984
No 51
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=92.60 E-value=0.59 Score=56.39 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=78.7
Q ss_pred cccchhhhhhc-ccCCceeeEEEEEEEeec---CCcccceeEEEeecCcEEEEEECCEEEEEEEcccccccccccCCCce
Q 039348 462 FEAAQLLDQKE-ASGDVSDYLWYMTSVDTR---NISLKNMTLRVSTNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYS 537 (651)
Q Consensus 462 ~~~~~~~Eql~-~T~D~tgYlwY~T~v~~~---~~~~~~~~Lrv~s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~ 537 (651)
...|.+.+..+ .-++.+.=++|.+.+..+ .+ ....|.+......+.||+||+.++++.+. + ..
T Consensus 45 i~VP~~w~~~~~~~~~~~~~~~y~~~~~~~~~~~~--~~~~l~f~~~~~~~~v~~ng~~~l~~eg~---------~--~~ 111 (808)
T COG3250 45 IAVPGNWQDQGEYDRPIYTNVWYPREVFPPKVPAG--NRIGLYFDAVDTLAKVWLNGQEVLEFQGV---------Y--TP 111 (808)
T ss_pred ccCCccHhhcCccCcceecceeeeecccCCccccC--CceEEEEeccccceeEEeCCeEEEEecCc---------e--eE
Confidence 33444555555 555566668899998665 23 56788999999999999999999999887 4 45
Q ss_pred eEEEeeeeccCCccEEEEEEec-c---------------Cc---ccccCccc-ccccccccccEEEeccCCcee
Q 039348 538 FGFDKAVSLKKGLNVISLLSVT-V---------------GL---ANYGAFYD-LKPTGLINGGVLLNGKGNNSI 591 (651)
Q Consensus 538 f~~~~~~~l~~g~n~LsiLv~n-v---------------G~---~NyG~~~e-~~~kGI~~g~V~l~g~~~~~i 591 (651)
|++..+-.+..+.|.+.+-++. + +. .+|=+..+ .+++|| .+.|.|..+|++.+
T Consensus 112 fev~vng~~v~~~~~~~~~~~~dis~~~~~~~~~~~~~v~~~~~~~~~~~~d~~r~aGi-~RdV~l~i~p~~~~ 184 (808)
T COG3250 112 FEVDVTGPYVGGGKDSRITVEFDISPNLQTGPNGLVVTVENWSKGSYYEDQDFFRYAGI-HRDVMLYITPNTHV 184 (808)
T ss_pred EEEeeccceecCCcceEEEEeeccccccccCCccCceEEeccCCCCCccccCeeecccc-cceeEEEEccceeE
Confidence 6666554455555555554444 0 11 22222234 789999 99999999999877
No 52
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=92.32 E-value=2.6 Score=43.99 Aligned_cols=131 Identities=17% Similarity=0.232 Sum_probs=78.7
Q ss_pred ccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCcccc
Q 039348 53 PEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI-LRIGPYVCAEWNYGGFPMWLH 131 (651)
Q Consensus 53 ~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~ 131 (651)
..-|++.|+.++++|++.|++.+ +..| ..+...+++ ..++.++.+.++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 46699999999999999999943 2222 223344554 3478899999999999975 44331 11111
Q ss_pred cCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccC---cchHHHHHHHHHHHHhcC
Q 039348 132 NTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYG---DAGKQYIKWCANMAVAQN 208 (651)
Q Consensus 132 ~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~---~~~~~y~~~l~~~~~~~g 208 (651)
+-+.|+.-+++..+.+++.++..+ .+ |.++|.+- ..++.. ..... ..-.+.++.+.+.+++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Cccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 223356666677777777777777 33 55666542 111100 00000 012356677788888888
Q ss_pred CCc
Q 039348 209 ISE 211 (651)
Q Consensus 209 i~v 211 (651)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 854
No 53
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.29 E-value=0.5 Score=50.86 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=68.7
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccC-------ccCCc-------CceeeccCchhHHHHHHHHHHcCCEEEEecCcee
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWN-------VHEPR-------RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYV 117 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn-------~hEp~-------~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi 117 (651)
.++.-++.|++++++|||+|-.=|.+. -.+|. +|. + -|..-|..+|+.|++.||.|..++ .+-
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~-~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWF-RVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEE-Eee
Confidence 566678899999999999997544431 22221 111 1 012279999999999999999776 111
Q ss_pred eeecCC----CCCCcccc-cCCCCcccc----CCh----hHHHHHHHHHHHHHHHH-HhccccccCCCcEEEecccc
Q 039348 118 CAEWNY----GGFPMWLH-NTPGIQLRT----DND----IFKNEMQVFTTKIVNMC-KEANLFASQGGPIILAQIEN 180 (651)
Q Consensus 118 ~aEw~~----GG~P~WL~-~~p~i~~Rt----~d~----~y~~~~~~~~~~i~~~l-~~~~l~~~~gGpII~~QIEN 180 (651)
...-.. -.-|.|+. +.|+..... .+. +-..+|++|+..++.-| +++ +|=++|++-
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y--------dvDGIhlDd 162 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY--------DVDGIHLDD 162 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC--------CCCeEEecc
Confidence 110011 12488876 356532222 111 22456777776655544 433 355778873
No 54
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=91.84 E-value=2 Score=50.11 Aligned_cols=73 Identities=23% Similarity=0.321 Sum_probs=50.0
Q ss_pred eeEEEEEEEeecCCcccceeEEEeecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeee-eccCCccEEEEEE
Q 039348 479 DYLWYMTSVDTRNISLKNMTLRVSTNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAV-SLKKGLNVISLLS 557 (651)
Q Consensus 479 gYlwY~T~v~~~~~~~~~~~Lrv~s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~-~l~~g~n~LsiLv 557 (651)
--+||. .+.++..+ ....|++.+.+- -+|||||+-+|-..-. .|. +.++-+|- -|+.+.|.|.|+=
T Consensus 557 P~~w~k-~f~~p~g~-~~t~Ldm~g~GK-G~vwVNG~niGRYW~~--~G~--------Q~~yhvPr~~Lk~~~N~lvvfE 623 (649)
T KOG0496|consen 557 PLTWYK-TFDIPSGS-EPTALDMNGWGK-GQVWVNGQNIGRYWPS--FGP--------QRTYHVPRSWLKPSGNLLVVFE 623 (649)
T ss_pred CeEEEE-EecCCCCC-CCeEEecCCCcc-eEEEECCcccccccCC--CCC--------ceEEECcHHHhCcCCceEEEEE
Confidence 468998 77777221 356899988875 6899999999977744 122 34455542 3677889988777
Q ss_pred eccCccc
Q 039348 558 VTVGLAN 564 (651)
Q Consensus 558 ~nvG~~N 564 (651)
|..|-++
T Consensus 624 ee~~~p~ 630 (649)
T KOG0496|consen 624 EEGGDPN 630 (649)
T ss_pred eccCCCc
Confidence 7665444
No 55
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=91.66 E-value=1.4 Score=50.51 Aligned_cols=150 Identities=16% Similarity=0.238 Sum_probs=97.8
Q ss_pred CCcEEECCEEEEEEEEEeeCC-----CCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHH
Q 039348 29 ANALIIDGQRKVIISGSIHYP-----RSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQ 103 (651)
Q Consensus 29 ~~~~~idG~~~~i~sG~~Hy~-----r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~ 103 (651)
+..|.|+|.|.++.++.--+. |..-+.-+-.|+-++++|+|++++ |.. |...-+.|-++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----------GvYEsd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----------GVYESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----------ccccchhHHHHhh
Confidence 446789999999888876543 234455567899999999999998 331 3345679999999
Q ss_pred HcCCEEEEecCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccc-
Q 039348 104 DAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEY- 182 (651)
Q Consensus 104 ~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEy- 182 (651)
+.||.|--.. =+.||- =..|..|+..++.=++.=+.+|+.|| .||.+-=.||=
T Consensus 393 ~lGilVWQD~-MFACAl------------------YPt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACAL------------------YPTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhc------------------ccCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccH
Confidence 9999875221 123432 23467899988888777777777554 78877665552
Q ss_pred -cccccccCc-------chHH----HHHHHHHHHHhcCCCcCeEEecC
Q 039348 183 -GNIMEKYGD-------AGKQ----YIKWCANMAVAQNISEPWIMCQQ 218 (651)
Q Consensus 183 -g~~~~~~~~-------~~~~----y~~~l~~~~~~~gi~vP~~~~~~ 218 (651)
.-.+..|+. .-++ |.+-++++.+.-.-..|.++...
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 111111221 1223 34456666666666789888643
No 56
>smart00642 Aamy Alpha-amylase domain.
Probab=91.61 E-value=0.48 Score=46.39 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=41.9
Q ss_pred hHHHHHHHHHcCCCEEEEccccCccC-------CcCcee-----eccCchhHHHHHHHHHHcCCEEEEecCc
Q 039348 56 WPDLIQKAKDGGLDAIETYIFWNVHE-------PRRREY-----DFSGNLDFVKFFKLVQDAGLYAILRIGP 115 (651)
Q Consensus 56 W~~~l~k~Ka~G~NtV~~yv~Wn~hE-------p~~G~f-----dF~g~~dL~~fl~la~~~GL~Vilr~GP 115 (651)
+.+.|.-+|++|+|+|.+-=++...+ -.+..| .|....+|+++++.|+++||.||+..=|
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 44566669999999999753332221 122222 3555689999999999999999998644
No 57
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=90.88 E-value=2.7 Score=43.54 Aligned_cols=131 Identities=16% Similarity=0.208 Sum_probs=76.8
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCccccc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI-LRIGPYVCAEWNYGGFPMWLHN 132 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~ 132 (651)
-.|++.++.++++|++.|++.+. ..|+ .....+|+ ..++.++-+.++++||.+. +.++. .-.
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~----------~~~---- 78 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSG----------HRR---- 78 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEeccc----------ccC----
Confidence 36999999999999999999632 2222 01122333 3478999999999999875 33221 000
Q ss_pred CCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccc--cccCcchHHHHHHHHHHHHhcCCC
Q 039348 133 TPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIM--EKYGDAGKQYIKWCANMAVAQNIS 210 (651)
Q Consensus 133 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~--~~~~~~~~~y~~~l~~~~~~~gi~ 210 (651)
..+.+.|+.-++...+.++++++..+ .+ |.++|-+---..+.... ..+ ..-.+.++.+.+++++.|+.
T Consensus 79 ---~~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 79 ---FPFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred ---cCCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCE
Confidence 11334566666666777777777766 22 45666542100000000 000 12235778888889998885
Q ss_pred c
Q 039348 211 E 211 (651)
Q Consensus 211 v 211 (651)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 4
No 58
>PF10435 BetaGal_dom2: Beta-galactosidase, domain 2; InterPro: IPR018954 This is the second domain of the five-domain beta-galactosidase enzyme that altogether catalyses the hydrolysis of beta(1-3) and beta(1-4) galactosyl bonds in oligosaccharides as well as the inverse reaction of enzymatic condensation and trans-glycosylation. This domain is made up of 16 antiparallel beta-strands and an alpha-helix at its C terminus. The fold of this domain appears to be unique. In addition, the last seven strands of the domain form a subdomain with an immunoglobulin-like (I-type Ig) fold in which the first strand is divided between the two beta-sheets. In penicillin spp this strand is interrupted by a 12-residue insertion which forms an additional edge-strand to the second beta-sheet of the sub-domain. The remainder of the second domain forms a series of beta-hairpins at its N terminus, four strands of which are contiguous with part of the Ig-like sub-domain, forming in total a seven-stranded antiparallel beta-sheet. This domain is associated with IPR001944 from INTERPRO, which is N-terminal to it, but itself has no metazoan members. ; GO: 0004565 beta-galactosidase activity; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A.
Probab=90.73 E-value=0.62 Score=46.55 Aligned_cols=60 Identities=23% Similarity=0.362 Sum_probs=36.3
Q ss_pred eEEEEeeCCCCceEEEEecCCCCceeEEEeC-----Ccceeeec---------CceEEEcc-----CCCceeeeeeeec
Q 039348 359 DLTKFTLNATGERFCMLSNSDNTGDYTADLG-----EDGKFFVP---------AWSVTFLQ-----NCSKEVYNTAKIN 418 (651)
Q Consensus 359 ~~~~y~~~~~g~~~~Fl~N~~~~~~~~v~~~-----~~g~~~lp---------~~sv~ilp-----~~~~v~~~Ta~v~ 418 (651)
.+...++++|+++|++++|.+..+...+.|. ..|+++|| .+...|++ +..+++|.||+|-
T Consensus 21 ~vt~l~np~t~a~Fyvvrh~~~~s~~~~~f~l~v~Ts~G~~tiPq~~g~ltL~GrdSKIlvtDy~~G~~~LlYSTAeil 99 (183)
T PF10435_consen 21 FVTHLRNPDTGAGFYVVRHNDSTSTASTSFTLNVNTSDGTLTIPQLGGSLTLNGRDSKILVTDYDFGGHTLLYSTAEIL 99 (183)
T ss_dssp EEEEEE-STTS-EEEEEEESSTT--S-EEE-EEEEETTEEEEE-TTSS-EEE-TT-EEEEEEEEEETTEEEEEESSEEE
T ss_pred EEEEeeCCCCCcEEEEEEccCCCCCCceEEEEEeecCCeeEEecccCCcEEECCcceeEEEeecccCCcEEEEechheE
Confidence 3444568888999999999776554444333 12445555 67777877 6789999998774
No 59
>PRK14706 glycogen branching enzyme; Provisional
Probab=89.89 E-value=5.4 Score=47.26 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=35.8
Q ss_pred HHHHHHcCCCEEEE-ccc-------cCcc-----CCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 60 IQKAKDGGLDAIET-YIF-------WNVH-----EPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 60 l~k~Ka~G~NtV~~-yv~-------Wn~h-----Ep~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
+.-+|++|+|+|+. +|. |... .|. =.|....+|.+|++.|+++||.|||..
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~---~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPT---SRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccc---cccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999995 332 3221 111 023445799999999999999999873
No 60
>PRK05402 glycogen branching enzyme; Provisional
Probab=89.49 E-value=3.9 Score=49.06 Aligned_cols=54 Identities=26% Similarity=0.283 Sum_probs=37.2
Q ss_pred HHHHHHcCCCEEEE-ccccC----ccCCcCcee-----eccCchhHHHHHHHHHHcCCEEEEec
Q 039348 60 IQKAKDGGLDAIET-YIFWN----VHEPRRREY-----DFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 60 l~k~Ka~G~NtV~~-yv~Wn----~hEp~~G~f-----dF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
|.-+|++|+|+|.. +|+=. .|-..+..| .|.+..+|.+||+.|+++||.|||..
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999996 45410 111111111 24456799999999999999999983
No 61
>PRK09936 hypothetical protein; Provisional
Probab=89.31 E-value=0.78 Score=48.81 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=47.0
Q ss_pred CCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCc-hhHHHHHHHHHHcCCEEEEe
Q 039348 49 PRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGN-LDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 49 ~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~-~dL~~fl~la~~~GL~Vilr 112 (651)
.+++++.|++.++.+++.||+|+=+ =|..--.+ ||.+. -+|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLiv--QWt~yG~~----~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVV--QWTRYGDA----DFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE--EeeeccCC----CcccchHHHHHHHHHHHHcCCEEEEc
Confidence 4679999999999999999999754 45433111 88764 59999999999999999876
No 62
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.89 E-value=1.2 Score=49.73 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=79.3
Q ss_pred CccchHHHHHHHHHcCCCEEEE------c-------cccCccCCcCceee-ccCchhHHHHHHHHHHcCCEEEEecCcee
Q 039348 52 TPEMWPDLIQKAKDGGLDAIET------Y-------IFWNVHEPRRREYD-FSGNLDFVKFFKLVQDAGLYAILRIGPYV 117 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~------y-------v~Wn~hEp~~G~fd-F~g~~dL~~fl~la~~~GL~Vilr~GPyi 117 (651)
.+..-.+.|.+++++|+|||-. | .+|..-- ||.+- =.|..-|...|++|++.||.|+.++=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 5666688999999999999963 2 2244332 33321 12444789999999999999999988887
Q ss_pred eeecCCCC---CCcccccC-CCCc-cccCC-------hhHHHHHHHHHHH-HHHHHHhccccccCCCcEEEeccccccc
Q 039348 118 CAEWNYGG---FPMWLHNT-PGIQ-LRTDN-------DIFKNEMQVFTTK-IVNMCKEANLFASQGGPIILAQIENEYG 183 (651)
Q Consensus 118 ~aEw~~GG---~P~WL~~~-p~i~-~Rt~d-------~~y~~~~~~~~~~-i~~~l~~~~l~~~~gGpII~~QIENEyg 183 (651)
.|--..-. -|.|+... |+.. .|... .++.-+++.|+.. ++++++++ .|=++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 65321111 37777653 5432 33332 2455677888777 56666644 467889876655
No 63
>PRK12568 glycogen branching enzyme; Provisional
Probab=88.52 E-value=7.5 Score=46.68 Aligned_cols=55 Identities=25% Similarity=0.353 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCEEEE-ccc-------cCc-----cCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCc
Q 039348 58 DLIQKAKDGGLDAIET-YIF-------WNV-----HEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGP 115 (651)
Q Consensus 58 ~~l~k~Ka~G~NtV~~-yv~-------Wn~-----hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GP 115 (651)
+.|.-+|++|+|+|+. +|+ |.. ..|.+ .|....++.+|++.|+++||.|||..=|
T Consensus 274 ~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 274 QLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3467789999999996 453 422 11111 3455679999999999999999998433
No 64
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=88.36 E-value=1.6 Score=42.33 Aligned_cols=124 Identities=17% Similarity=0.193 Sum_probs=74.8
Q ss_pred HHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCccc
Q 039348 60 IQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLR 139 (651)
Q Consensus 60 l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~R 139 (651)
|+.++++|++.|+............ ...++++.++++++||.++.--.+.. + . .+....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~---~-------~~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---F---W-------SPDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---S---S-------CTGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---c---c-------ccccccc
Confidence 5789999999999976543322221 34799999999999999763211110 0 0 0111134
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEeccc--ccccccc--cccCcchHHHHHHHHHHHHhcCCCc
Q 039348 140 TDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIE--NEYGNIM--EKYGDAGKQYIKWCANMAVAQNISE 211 (651)
Q Consensus 140 t~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIE--NEyg~~~--~~~~~~~~~y~~~l~~~~~~~gi~v 211 (651)
+.+++ ++...+.+.+.++..+. + |.+.|.+..- +...... ..+ ..-.+.++.+.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~~--l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAKR--L----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHHH--H----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHHH--h----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 44444 77777888888888873 3 5677777743 1211110 000 123467788888888888753
No 65
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=87.94 E-value=5.5 Score=41.42 Aligned_cols=125 Identities=18% Similarity=0.270 Sum_probs=75.0
Q ss_pred chHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCcccccC
Q 039348 55 MWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI-LRIGPYVCAEWNYGGFPMWLHNT 133 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~~ 133 (651)
.|++.++.++++|+..|+..+. ..++ ....++++ ..+++++.++++++||.|. +.++.. ..+
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~------- 84 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRF------- 84 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------ccc-------
Confidence 5999999999999999999532 1111 01112332 2368899999999999875 332210 001
Q ss_pred CCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCc-------chHHHHHHHHHHHHh
Q 039348 134 PGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGD-------AGKQYIKWCANMAVA 206 (651)
Q Consensus 134 p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~-------~~~~y~~~l~~~~~~ 206 (651)
.+-+.++.-++...+.+++.++..+ .+ |.++|-+. |.. ..++. .-.+.++.|.+++++
T Consensus 85 ---~~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 85 ---PLGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 1123456666777777777777777 33 56666553 110 00110 113567788888888
Q ss_pred cCCCc
Q 039348 207 QNISE 211 (651)
Q Consensus 207 ~gi~v 211 (651)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 88754
No 66
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=87.73 E-value=0.4 Score=53.94 Aligned_cols=156 Identities=14% Similarity=0.160 Sum_probs=102.5
Q ss_pred EEECCEEEEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEccccCcc-CC---cCceeec-cCchhHHHHHHHHHHcC
Q 039348 32 LIIDGQRKVIISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVH-EP---RRREYDF-SGNLDFVKFFKLVQDAG 106 (651)
Q Consensus 32 ~~idG~~~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~h-Ep---~~G~fdF-~g~~dL~~fl~la~~~G 106 (651)
|.++++++..++..-.++++-.++-+++|+-|+.+|++++++. .+- |+ ++|.-+- ++..-++.|++.|.+++
T Consensus 4 F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~ 80 (587)
T COG3934 4 FALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLD 80 (587)
T ss_pred EEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccCc
Confidence 6777777776666555666666667788999999999999985 444 66 2333221 23347899999999999
Q ss_pred CEEEEecCceeeeecCCCCC---Ccccc-cCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccc
Q 039348 107 LYAILRIGPYVCAEWNYGGF---PMWLH-NTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEY 182 (651)
Q Consensus 107 L~Vilr~GPyi~aEw~~GG~---P~WL~-~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEy 182 (651)
|+|+++. |.+==..||. -.|-- +.|+-.+ -|+.++..-++|+..+++-++. ...|.+|-+-||
T Consensus 81 lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk~-------~ptI~gw~l~Ne- 147 (587)
T COG3934 81 LKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYKL-------DPTIAGWALRNE- 147 (587)
T ss_pred ceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhcc-------ChHHHHHHhcCC-
Confidence 9998873 4432234443 22331 1232111 2566666677888888775553 457899999999
Q ss_pred cccccccCcchHHHHHHHHHHHH
Q 039348 183 GNIMEKYGDAGKQYIKWCANMAV 205 (651)
Q Consensus 183 g~~~~~~~~~~~~y~~~l~~~~~ 205 (651)
.... -...+..+++|+++|+-
T Consensus 148 -~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 -PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred -cccc-ccCChhHHHHHHHHHHH
Confidence 2210 11356789999999963
No 67
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=87.35 E-value=6.1 Score=41.12 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=59.8
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHc-CCEEEEecCceeeeecCCCCCCccccc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDA-GLYAILRIGPYVCAEWNYGGFPMWLHN 132 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~P~WL~~ 132 (651)
.-|++.|+.+|++|++.|++-+........+ .....+++++.++++++ ++.+.+- +||.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~--------------- 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSVH-APYL--------------- 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEEE-cCce---------------
Confidence 6799999999999999999876432111111 11346899999999999 6665543 2321
Q ss_pred CCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEeccc
Q 039348 133 TPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIE 179 (651)
Q Consensus 133 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIE 179 (651)
..+.+.++.-++.....+.+.++..+ .+ |-+.|.+...
T Consensus 70 ---~~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g 107 (279)
T cd00019 70 ---INLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPG 107 (279)
T ss_pred ---eccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCC
Confidence 11223345455555566666666666 22 4456666554
No 68
>PRK01060 endonuclease IV; Provisional
Probab=86.87 E-value=15 Score=38.12 Aligned_cols=93 Identities=17% Similarity=0.312 Sum_probs=61.3
Q ss_pred hHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEE---EEecCceeeeecCCCCCCccccc
Q 039348 56 WPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYA---ILRIGPYVCAEWNYGGFPMWLHN 132 (651)
Q Consensus 56 W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~V---ilr~GPyi~aEw~~GG~P~WL~~ 132 (651)
+++.|+.++++|++.|++.+.- -+.-..+.++- .++.++-++++++||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~-p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGN-PQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCC-CCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 8899999999999999985431 12111222222 26888999999999973 22 23331
Q ss_pred CCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEec
Q 039348 133 TPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQ 177 (651)
Q Consensus 133 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 177 (651)
+.+-+.|+..+++..+.+++.++..+ .+ |.++|-+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345677888888888888888776 33 44555554
No 69
>PRK14705 glycogen branching enzyme; Provisional
Probab=86.56 E-value=12 Score=47.52 Aligned_cols=56 Identities=18% Similarity=0.225 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCCEEEE-ccc-------cCccC--CcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 58 DLIQKAKDGGLDAIET-YIF-------WNVHE--PRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 58 ~~l~k~Ka~G~NtV~~-yv~-------Wn~hE--p~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
+.|.-+|++|+|+|+. +|+ |..-- ...=.=.|....||.+||+.|+++||.|||..
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3467899999999996 453 42110 00000134456799999999999999999873
No 70
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=86.42 E-value=1.2 Score=50.75 Aligned_cols=61 Identities=7% Similarity=0.244 Sum_probs=42.4
Q ss_pred ccchH---HHHHHHHHcCCCEEEE-ccccCc-----cCCcCce-e-------------eccCchhHHHHHHHHHHcCCEE
Q 039348 53 PEMWP---DLIQKAKDGGLDAIET-YIFWNV-----HEPRRRE-Y-------------DFSGNLDFVKFFKLVQDAGLYA 109 (651)
Q Consensus 53 ~~~W~---~~l~k~Ka~G~NtV~~-yv~Wn~-----hEp~~G~-f-------------dF~g~~dL~~fl~la~~~GL~V 109 (651)
.+.|. +.|.-+|++|+++|-+ +++-+. |--.+-. | .|....||+++++.|+++||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35575 4566689999999987 455432 3222222 2 2334579999999999999999
Q ss_pred EEec
Q 039348 110 ILRI 113 (651)
Q Consensus 110 ilr~ 113 (651)
||-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9874
No 71
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=86.12 E-value=1.2 Score=49.00 Aligned_cols=73 Identities=26% Similarity=0.301 Sum_probs=48.9
Q ss_pred EEEEeeCCCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeee
Q 039348 42 ISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAE 120 (651)
Q Consensus 42 ~sG~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aE 120 (651)
+|=++++...+.+.....|++|+++|+..|=| ++|.|+...=+. ...+..+++.|+++||.|++.+.|=+...
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~~ 74 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLKK 74 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHHT
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHHH
Confidence 45567777777888999999999999988776 789988543221 13789999999999999999988755443
No 72
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=85.51 E-value=8.5 Score=41.98 Aligned_cols=138 Identities=17% Similarity=0.308 Sum_probs=89.8
Q ss_pred CCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHH---HcCCEEEEecCceeeeecCCCCCC
Q 039348 51 STPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQ---DAGLYAILRIGPYVCAEWNYGGFP 127 (651)
Q Consensus 51 ~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~---~~GL~Vilr~GPyi~aEw~~GG~P 127 (651)
..|+..+.-++.+|+.|++.--.|-.| |.|.+-|.+-++..- +.+|...|. |.+-.|..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~---- 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR---- 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----
Confidence 366777888999999999999999888 456667777776554 345655555 22222311
Q ss_pred cccccCCCCccccCChhHH--HHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCcchHHHHHHHHHHHH
Q 039348 128 MWLHNTPGIQLRTDNDIFK--NEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKQYIKWCANMAV 205 (651)
Q Consensus 128 ~WL~~~p~i~~Rt~d~~y~--~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~ 205 (651)
.|-.....+.+- ..|. +..+++++.|.+.+++..++--+|-||+++=--.++ ..-+++++.+++.++
T Consensus 117 ~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 117 RWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAK 185 (345)
T ss_pred ccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHH
Confidence 122221222111 1221 224677788889999877777789999988432222 245789999999999
Q ss_pred hcCCCcCeEEec
Q 039348 206 AQNISEPWIMCQ 217 (651)
Q Consensus 206 ~~gi~vP~~~~~ 217 (651)
++|+.-+.+...
T Consensus 186 ~~G~~giyii~~ 197 (345)
T PF14307_consen 186 EAGLPGIYIIAV 197 (345)
T ss_pred HcCCCceEEEEE
Confidence 999987755543
No 73
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=85.15 E-value=2.5 Score=48.17 Aligned_cols=68 Identities=18% Similarity=0.353 Sum_probs=43.0
Q ss_pred EEeeCCCCCccchHHHHHHHH-HcCCCEEEEc-cc---cCcc-C-CcCc--eeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 44 GSIHYPRSTPEMWPDLIQKAK-DGGLDAIETY-IF---WNVH-E-PRRR--EYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 44 G~~Hy~r~~~~~W~~~l~k~K-a~G~NtV~~y-v~---Wn~h-E-p~~G--~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
|.-|.....++.|+..|+.++ ++||..|++. +| .... | ..+| .|||+ .||.++|...++||+-.+..|
T Consensus 29 ~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel~ 105 (486)
T PF01229_consen 29 GSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVELG 105 (486)
T ss_dssp EES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE-
T ss_pred CCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEEE
Confidence 444555557778999888886 7899999974 22 1111 1 1223 39999 899999999999999877765
No 74
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=85.01 E-value=18 Score=40.16 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=74.6
Q ss_pred CccchHHHHHHHHHcCCCEEEEc----cccCccCCcCceeeccCchhHHHHHHHHHHcCCEEE-EecCceeeeecCCCCC
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETY----IFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI-LRIGPYVCAEWNYGGF 126 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~y----v~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~ 126 (651)
++....+++++++++|+..|+.. ++|..-..+ -..++.++-++++++||.|. +-++-+.+
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~v~~nl~~~-------- 94 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPMVTTNLFSH-------- 94 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEEeeccccCC--------
Confidence 33456789999999999999964 222111110 02357899999999999975 33321111
Q ss_pred CcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccc---cccccccccCc---chHHHHHHH
Q 039348 127 PMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIEN---EYGNIMEKYGD---AGKQYIKWC 200 (651)
Q Consensus 127 P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIEN---Eyg~~~~~~~~---~~~~y~~~l 200 (651)
|.|. . .-+-+.|+..+++.-+++.+.++.-+ .+ |.+.|.+-..- ||... ..+.. .-.+.++.|
T Consensus 95 ~~~~---~-g~las~d~~vR~~ai~~~kraId~A~--eL----Ga~~v~v~~G~~g~~~~~~-~d~~~a~~~~~e~L~~l 163 (382)
T TIGR02631 95 PVFK---D-GGFTSNDRSVRRYALRKVLRNMDLGA--EL----GAETYVVWGGREGAEYDGA-KDVRAALDRMREALNLL 163 (382)
T ss_pred cccc---C-CCCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEccCCCCCcCccc-cCHHHHHHHHHHHHHHH
Confidence 1121 1 12445577777776666666666665 33 44544443211 11100 00001 123445666
Q ss_pred HHHHHhcCCCcCeEE
Q 039348 201 ANMAVAQNISEPWIM 215 (651)
Q Consensus 201 ~~~~~~~gi~vP~~~ 215 (651)
.+.+++.|.+|.+..
T Consensus 164 ae~A~~~G~GV~laL 178 (382)
T TIGR02631 164 AAYAEDQGYGLRFAL 178 (382)
T ss_pred HHHHHhhCCCcEEEE
Confidence 667788776665443
No 75
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=84.45 E-value=3.3 Score=44.86 Aligned_cols=149 Identities=19% Similarity=0.273 Sum_probs=88.5
Q ss_pred CccchHHHHHHHHHcCCCEEEEc-------cccCccCCcCceeecc-C-chhHHHHHHHHHHcCCEEEEecCceeeeecC
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETY-------IFWNVHEPRRREYDFS-G-NLDFVKFFKLVQDAGLYAILRIGPYVCAEWN 122 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~y-------v~Wn~hEp~~G~fdF~-g-~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~ 122 (651)
.++.-+..|+.+|+.|+|+|-+= |.+..-.|..-+..-. . ..|+.++++.++++|+|+|.|+=-+-- ..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD-~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKD-PVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecC-hHH
Confidence 34567889999999999998752 3443333332222111 1 369999999999999999999632210 000
Q ss_pred CCCCCcccccC-CCCccccCC-----hhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccc------------cccc
Q 039348 123 YGGFPMWLHNT-PGIQLRTDN-----DIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIEN------------EYGN 184 (651)
Q Consensus 123 ~GG~P~WL~~~-p~i~~Rt~d-----~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIEN------------Eyg~ 184 (651)
..--|.|-.+. .+-..|.+. .+|.+++.+|.-.|++.+++.++ =-+|+++ .|+.
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GF--------dEIqfDYIRFP~~~~~~~l~y~~ 161 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLGF--------DEIQFDYIRFPDEGRLSGLDYSE 161 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcCC--------CEEEeeeeecCCCCcccccccCC
Confidence 01146665532 221122221 26889999999999999986543 1334432 1211
Q ss_pred cccccC----cchHHHHHHHHHHHHhcCCCc
Q 039348 185 IMEKYG----DAGKQYIKWCANMAVAQNISE 211 (651)
Q Consensus 185 ~~~~~~----~~~~~y~~~l~~~~~~~gi~v 211 (651)
- ... ..=.+|++.+++.++..|+.|
T Consensus 162 ~--~~~~~r~~aI~~Fl~~a~~~l~~~~v~v 190 (316)
T PF13200_consen 162 N--DTEESRVDAITDFLAYAREELHPYGVPV 190 (316)
T ss_pred C--CCcchHHHHHHHHHHHHHHHHhHcCCCE
Confidence 0 001 122578888888888877643
No 76
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=83.40 E-value=1.3 Score=45.59 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCEEEEccccCccC----CcCcee-e----ccCchhHHHHHHHHHHcCCEEEEec
Q 039348 57 PDLIQKAKDGGLDAIETYIFWNVHE----PRRREY-D----FSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~Wn~hE----p~~G~f-d----F~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.+.|.-+|++|+|+|.+-=++...+ -.+-.| + |....+|.++++.|+++||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 3567889999999999753333221 111111 1 2345699999999999999999874
No 77
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=83.24 E-value=4.4 Score=51.45 Aligned_cols=113 Identities=15% Similarity=0.218 Sum_probs=70.5
Q ss_pred cEEECCEEEEEEEE---EeeCCCC--CccchHHHHHHHHHcCCCEEEE-ccc-cC---ccCCcCceee----c----cCc
Q 039348 31 ALIIDGQRKVIISG---SIHYPRS--TPEMWPDLIQKAKDGGLDAIET-YIF-WN---VHEPRRREYD----F----SGN 92 (651)
Q Consensus 31 ~~~idG~~~~i~sG---~~Hy~r~--~~~~W~~~l~k~Ka~G~NtV~~-yv~-Wn---~hEp~~G~fd----F----~g~ 92 (651)
.|.|+|++++.+.+ +-..+++ +-+.|++.|..+|++|+|+|-. +++ =. ..=...+++. | .+.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 45566644444333 2234554 4477999999999999999985 455 11 1111222222 3 256
Q ss_pred hhHHHHHHHHHHc-CCEEEEecCceeeeecCCCCC-CcccccCCCCccccCChhHHHHH
Q 039348 93 LDFVKFFKLVQDA-GLYAILRIGPYVCAEWNYGGF-PMWLHNTPGIQLRTDNDIFKNEM 149 (651)
Q Consensus 93 ~dL~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~-P~WL~~~p~i~~Rt~d~~y~~~~ 149 (651)
.|+.++++.|++. ||++|+.. + |+.-+. =.||.++|+.-.-..+.++|+++
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDv---V---~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A 236 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDI---V---FNHTANNSPWLLEHPEAAYNCITSPHLRPA 236 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe---e---ecccccCCHHHHhChHhhcCCCCCchhhhH
Confidence 7899999999996 99999874 1 333332 35888888754555555565544
No 78
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=82.26 E-value=20 Score=36.69 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=35.3
Q ss_pred chHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEE
Q 039348 55 MWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAIL 111 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vil 111 (651)
-+++.+++++++|++.|+...++ ..++..+.++++++||.+..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999985322 12588899999999999863
No 79
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=81.20 E-value=27 Score=36.08 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=72.0
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccC
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNT 133 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~ 133 (651)
..|++.|+.++++|++.|++..-. .|+-.+ +++ ..+++++-++++++||.|.. .+|. .+++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~-- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM-- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc--
Confidence 358999999999999999983211 011011 121 24688999999999999753 2221 123333221
Q ss_pred CCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEeccccc-cc-ccccccCcchHHHHHHHHHHHHhcCCCc
Q 039348 134 PGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENE-YG-NIMEKYGDAGKQYIKWCANMAVAQNISE 211 (651)
Q Consensus 134 p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENE-yg-~~~~~~~~~~~~y~~~l~~~~~~~gi~v 211 (651)
..++.-+++..+.+++.++.-+ .+ |.+.|.+-.-.. +. .....+ ..-.+.++.|.+.+++.|+.+
T Consensus 79 ------~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 ------LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 1234455555556666666555 22 445554422111 00 000001 122356888888898888753
No 80
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=80.45 E-value=26 Score=36.11 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=34.5
Q ss_pred hHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEE
Q 039348 56 WPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAIL 111 (651)
Q Consensus 56 W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vil 111 (651)
+++.|++++++|++.|++.. |. ..+++++.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~------~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF------PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC------CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 78899999999999999831 11 13799999999999999854
No 81
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=78.99 E-value=3.5 Score=47.77 Aligned_cols=53 Identities=25% Similarity=0.433 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCEEEE-ccc-------cCcc-----CCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 58 DLIQKAKDGGLDAIET-YIF-------WNVH-----EPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 58 ~~l~k~Ka~G~NtV~~-yv~-------Wn~h-----Ep~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
+.|.-+|++|+|+|.+ +|+ |... .|.+ .|.+..+|.+|++.|+++||.|||..
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4678899999999996 453 3211 1111 24456799999999999999999984
No 82
>PLN00196 alpha-amylase; Provisional
Probab=78.87 E-value=13 Score=42.00 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEEc-cccC--ccCCcCce-ee-----ccCchhHHHHHHHHHHcCCEEEEec
Q 039348 57 PDLIQKAKDGGLDAIETY-IFWN--VHEPRRRE-YD-----FSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~y-v~Wn--~hEp~~G~-fd-----F~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.+.|.-+|++|+++|-+. ++=+ -|--.+.. |+ |....+|+++++.|+++||+||+..
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 466777899999999875 4422 12222222 22 3334699999999999999999884
No 83
>PRK12313 glycogen branching enzyme; Provisional
Probab=78.69 E-value=3.9 Score=48.25 Aligned_cols=52 Identities=23% Similarity=0.439 Sum_probs=37.9
Q ss_pred HHHHHHHcCCCEEEE-ccc-------cCc-----cCCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 59 LIQKAKDGGLDAIET-YIF-------WNV-----HEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~-yv~-------Wn~-----hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.|.-+|++|+|+|.. +|+ |.. ..+.+ .|.+..+|.+||+.|+++||.|||..
T Consensus 176 ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 176 LIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 358889999999995 453 211 00110 35556799999999999999999983
No 84
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=77.97 E-value=4.3 Score=33.48 Aligned_cols=23 Identities=52% Similarity=0.830 Sum_probs=19.8
Q ss_pred eeEEEeecCcEEEEEECCEEEEE
Q 039348 497 MTLRVSTNGHGLHAYVNGKLIGS 519 (651)
Q Consensus 497 ~~Lrv~s~~h~~~vfvNG~~vgt 519 (651)
..|+|.+.=..|.|||||+++|.
T Consensus 2 g~l~V~s~p~gA~V~vdg~~~G~ 24 (71)
T PF08308_consen 2 GTLRVTSNPSGAEVYVDGKYIGT 24 (71)
T ss_pred EEEEEEEECCCCEEEECCEEecc
Confidence 36788888888999999999993
No 85
>PRK09989 hypothetical protein; Provisional
Probab=77.61 E-value=25 Score=36.18 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=34.2
Q ss_pred chHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEE
Q 039348 55 MWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAIL 111 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vil 111 (651)
-.++.|++++++|++.|++..+|. .+..++.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 368999999999999999843332 2367888889999999874
No 86
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=77.20 E-value=6 Score=38.83 Aligned_cols=63 Identities=25% Similarity=0.283 Sum_probs=36.0
Q ss_pred cceeEEEeecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeeccCCccEEEEEEecc
Q 039348 495 KNMTLRVSTNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKKGLNVISLLSVTV 560 (651)
Q Consensus 495 ~~~~Lrv~s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~g~n~LsiLv~nv 560 (651)
.+..|.|.+.+ +..+||||+.|+...-. |+-.---..-.--+++++-.|+.|.|.|.|++-+-
T Consensus 4 ~~A~l~isa~g-~Y~l~vNG~~V~~~~l~--P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~g 66 (172)
T PF08531_consen 4 RSARLYISALG-RYELYVNGERVGDGPLA--PGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNG 66 (172)
T ss_dssp ---EEEEEEES-EEEEEETTEEEEEE----------BTTEEEEEEEE-TTT--TTEEEEEEEEEE-
T ss_pred eEEEEEEEeCe-eEEEEECCEEeeCCccc--cccccCCCceEEEEEeChHHhCCCCCEEEEEEeCC
Confidence 35677776655 68999999999976611 10000000012257888888999999999999874
No 87
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=76.99 E-value=27 Score=36.49 Aligned_cols=124 Identities=19% Similarity=0.392 Sum_probs=78.6
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCcC--ceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPRR--REYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLH 131 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~--G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 131 (651)
-.|+++|.-+|++||+-|+.- .-|.-+ -+.||+. ...-.+.+++.+.|+.+ |-+| |.
T Consensus 18 ~sW~erl~~AK~~GFDFvEmS----vDEsDeRLaRLDWs~-~er~~l~~ai~etgv~i-----pSmC-----------lS 76 (287)
T COG3623 18 FSWLERLALAKELGFDFVEMS----VDESDERLARLDWSK-EERLALVNAIQETGVRI-----PSMC-----------LS 76 (287)
T ss_pred CCHHHHHHHHHHcCCCeEEEe----ccchHHHHHhcCCCH-HHHHHHHHHHHHhCCCc-----cchh-----------hh
Confidence 469999999999999999984 445433 3567762 34567888999999843 3333 11
Q ss_pred cCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCc----chHHH---HHHHHHHH
Q 039348 132 NTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGD----AGKQY---IKWCANMA 204 (651)
Q Consensus 132 ~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~----~~~~y---~~~l~~~~ 204 (651)
.+...-+-+.|+.-++.....+.+-+..-. +| .|=-+|+ ..+.-+|.. ..+.| |+|..+++
T Consensus 77 aHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQL----AGYDVYYE~~d~eT~~rFi~g~~~a~~lA 144 (287)
T COG3623 77 AHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQL----AGYDVYYEEADEETRQRFIEGLKWAVELA 144 (287)
T ss_pred hhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEee----ccceeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 122223568899998888888877666555 33 2555676 222222332 23444 45666777
Q ss_pred HhcCCC
Q 039348 205 VAQNIS 210 (651)
Q Consensus 205 ~~~gi~ 210 (651)
.++++.
T Consensus 145 ~~aqV~ 150 (287)
T COG3623 145 ARAQVM 150 (287)
T ss_pred HhhccE
Confidence 776653
No 88
>PLN02960 alpha-amylase
Probab=75.67 E-value=5.6 Score=48.44 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEE-ccc-------cCccCCc--CceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 57 PDLIQKAKDGGLDAIET-YIF-------WNVHEPR--RREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~-yv~-------Wn~hEp~--~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
++.|.-+|++|+|+|++ +|+ |...-.- .=.-.|....+|.+||+.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35688899999999996 454 3321000 000123445799999999999999999984
No 89
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=75.48 E-value=4.5 Score=47.48 Aligned_cols=55 Identities=15% Similarity=0.392 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCEEEE-ccc---------------cCccC-----CcCceee----cc--CchhHHHHHHHHHHcCCEEE
Q 039348 58 DLIQKAKDGGLDAIET-YIF---------------WNVHE-----PRRREYD----FS--GNLDFVKFFKLVQDAGLYAI 110 (651)
Q Consensus 58 ~~l~k~Ka~G~NtV~~-yv~---------------Wn~hE-----p~~G~fd----F~--g~~dL~~fl~la~~~GL~Vi 110 (651)
+.|.-+|++|+|+|++ +|+ |...- |. +.|- +- ...+|.+||+.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999996 454 32220 10 0110 10 02689999999999999999
Q ss_pred Eec
Q 039348 111 LRI 113 (651)
Q Consensus 111 lr~ 113 (651)
|..
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 984
No 90
>PRK10785 maltodextrin glucosidase; Provisional
Probab=75.15 E-value=5.6 Score=46.66 Aligned_cols=56 Identities=21% Similarity=0.374 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCEEEE-ccccC--ccCCcCcee-----eccCchhHHHHHHHHHHcCCEEEEe
Q 039348 57 PDLIQKAKDGGLDAIET-YIFWN--VHEPRRREY-----DFSGNLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~-yv~Wn--~hEp~~G~f-----dF~g~~dL~~fl~la~~~GL~Vilr 112 (651)
.+.|.-+|++|+|+|-+ +||=+ .|---...| .|.+..+|.+|++.|++.||+|||-
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD 245 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLD 245 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45677889999999996 56632 222111111 2445679999999999999999987
No 91
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=75.01 E-value=29 Score=36.95 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=49.0
Q ss_pred eeCCCC---CccchHHHHHHHHHcCCCEEEEccccCccC--------CcCceeeccCc--hhHHHHHHHHHHcCCEEEEe
Q 039348 46 IHYPRS---TPEMWPDLIQKAKDGGLDAIETYIFWNVHE--------PRRREYDFSGN--LDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 46 ~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hE--------p~~G~fdF~g~--~dL~~fl~la~~~GL~Vilr 112 (651)
+|.+|. +.+.-++.++++++.||-+=.+++=...|. ..-+.|+|.-. -|..++++..++.|++|++.
T Consensus 14 ~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 14 NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEE
Confidence 444452 556678899999999998766655333332 12356776532 49999999999999999988
Q ss_pred cCc
Q 039348 113 IGP 115 (651)
Q Consensus 113 ~GP 115 (651)
+=|
T Consensus 94 v~P 96 (292)
T cd06595 94 LHP 96 (292)
T ss_pred eCC
Confidence 644
No 92
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=74.93 E-value=31 Score=38.48 Aligned_cols=122 Identities=12% Similarity=0.162 Sum_probs=69.0
Q ss_pred CcCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCC----ccccC-ChhHHHHHHHHHHHH
Q 039348 82 PRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGI----QLRTD-NDIFKNEMQVFTTKI 156 (651)
Q Consensus 82 p~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i----~~Rt~-d~~y~~~~~~~~~~i 156 (651)
+..|.|||+....=+.|++.|++.|...++-+- =..|.|+++.-.. ...+| -+...++-..|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 567999999877788899999999999887641 1478888763211 00111 234567777888888
Q ss_pred HHHHHhccccccCCCcEEEeccccccccc-------ccccC-cchHHHHHHHHHHHHhcCCCcCeEEecC
Q 039348 157 VNMCKEANLFASQGGPIILAQIENEYGNI-------MEKYG-DAGKQYIKWCANMAVAQNISEPWIMCQQ 218 (651)
Q Consensus 157 ~~~l~~~~l~~~~gGpII~~QIENEyg~~-------~~~~~-~~~~~y~~~l~~~~~~~gi~vP~~~~~~ 218 (651)
+++++++++ +|=-+-.=||-... +|.+. +...+.++.|...+++.|+..-+..|+.
T Consensus 164 v~~~~~~GI------~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 164 VKHYKKWGI------NFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHCTT--------EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHhcCC------ccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 888864433 44445555886531 01111 2346788999999999999877666653
No 93
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=74.63 E-value=5.4 Score=42.50 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=48.7
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCCc-CceeeccCc--hhHHHHHHHHHHcCCEEEEecCceeee
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPR-RREYDFSGN--LDFVKFFKLVQDAGLYAILRIGPYVCA 119 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~fdF~g~--~dL~~fl~la~~~GL~Vilr~GPyi~a 119 (651)
..+..++.++++|+.||.+=.+.+=..++... -+.|.|.-. -|..++++..+++|++|++..=|+|+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 56677899999999996664444433333322 235655532 389999999999999999998888764
No 94
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=74.40 E-value=5.8 Score=41.48 Aligned_cols=52 Identities=17% Similarity=0.423 Sum_probs=39.3
Q ss_pred ccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 53 PEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 53 ~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|+.|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 667789999999999999998 45655554 34677999999999999998887
No 95
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=73.74 E-value=6.9 Score=45.25 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=40.3
Q ss_pred chHHHHHHHHHcCCCEEEE-ccccC---ccCCcCcee-----eccCchhHHHHHHHHHHcCCEEEEe
Q 039348 55 MWPDLIQKAKDGGLDAIET-YIFWN---VHEPRRREY-----DFSGNLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~-yv~Wn---~hEp~~G~f-----dF~g~~dL~~fl~la~~~GL~Vilr 112 (651)
-+.+.|.-+|++|+|+|-+ +|+=+ -|--..-.| .|....++.++++.|+++||+|||.
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3667888999999999986 45411 110000011 2345579999999999999999986
No 96
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=72.96 E-value=5.5 Score=46.15 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=40.7
Q ss_pred hHHHHHHHHHcCCCEEEE-ccccCc---cCCcCcee-----eccCchhHHHHHHHHHHcCCEEEEec
Q 039348 56 WPDLIQKAKDGGLDAIET-YIFWNV---HEPRRREY-----DFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 56 W~~~l~k~Ka~G~NtV~~-yv~Wn~---hEp~~G~f-----dF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
+.+.|.-+|++|+|+|-+ +++-+- |--....| .|....+|.+|++.|+++||+|||..
T Consensus 29 i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 29 IIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 567788999999999987 454321 11011111 13455799999999999999999874
No 97
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=72.70 E-value=8.6 Score=45.33 Aligned_cols=70 Identities=27% Similarity=0.423 Sum_probs=46.6
Q ss_pred EEEEEEEEeeCCCCCc-------cchHHHHHHHHHcCCCEEEE-ccc-------cCcc-----CCcCceeeccCchhHHH
Q 039348 38 RKVIISGSIHYPRSTP-------EMWPDLIQKAKDGGLDAIET-YIF-------WNVH-----EPRRREYDFSGNLDFVK 97 (651)
Q Consensus 38 ~~~i~sG~~Hy~r~~~-------~~W~~~l~k~Ka~G~NtV~~-yv~-------Wn~h-----Ep~~G~fdF~g~~dL~~ 97 (651)
+..|+ |+|---+.+ +.=.+.|.-+|++|+++|+. +|. |..- -|.. .|..-.||.+
T Consensus 144 ~~vIY--ElHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~ 218 (628)
T COG0296 144 PIVIY--ELHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKA 218 (628)
T ss_pred CceEE--EEEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHH
Confidence 44454 677433333 33356788899999999996 232 4321 1111 2334469999
Q ss_pred HHHHHHHcCCEEEEe
Q 039348 98 FFKLVQDAGLYAILR 112 (651)
Q Consensus 98 fl~la~~~GL~Vilr 112 (651)
|||.|+++||-|||.
T Consensus 219 fVD~aH~~GIgViLD 233 (628)
T COG0296 219 LVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHcCCEEEEE
Confidence 999999999999997
No 98
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=72.46 E-value=66 Score=33.18 Aligned_cols=92 Identities=16% Similarity=0.238 Sum_probs=60.9
Q ss_pred hHHHHHHHHHcCCCEEEEccccCccCCcCcee-eccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCC
Q 039348 56 WPDLIQKAKDGGLDAIETYIFWNVHEPRRREY-DFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTP 134 (651)
Q Consensus 56 W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~f-dF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p 134 (651)
-++.|+.+.+.|++.|+.. ..+|..-.- +++ ..+++++-++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 3578999999999999993 333322100 122 236889999999999986542 3431
Q ss_pred CCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEec
Q 039348 135 GIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQ 177 (651)
Q Consensus 135 ~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 177 (651)
+.+.+.|+..+++..+++.+.++..+ .+ |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12456678888888888888888776 33 55666554
No 99
>PRK09505 malS alpha-amylase; Reviewed
Probab=72.02 E-value=7.4 Score=46.48 Aligned_cols=58 Identities=9% Similarity=0.175 Sum_probs=41.6
Q ss_pred hHHHHHHHHHcCCCEEEE-ccccCccCCc----Cc------------------eeeccCchhHHHHHHHHHHcCCEEEEe
Q 039348 56 WPDLIQKAKDGGLDAIET-YIFWNVHEPR----RR------------------EYDFSGNLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 56 W~~~l~k~Ka~G~NtV~~-yv~Wn~hEp~----~G------------------~fdF~g~~dL~~fl~la~~~GL~Vilr 112 (651)
+.+.|.-+|++|+|+|-+ +++=+.|... .| .-.|....+|+++++.|+++||+|||.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 456788899999999985 4554433211 11 112445579999999999999999988
Q ss_pred c
Q 039348 113 I 113 (651)
Q Consensus 113 ~ 113 (651)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 100
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=71.89 E-value=68 Score=37.61 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=48.2
Q ss_pred cchHHHHHHHHHcCCCEEEEc-cccCccCCcCcee--------eccCc----hhHHHHHHHHHHcCCEEEEecCceeeee
Q 039348 54 EMWPDLIQKAKDGGLDAIETY-IFWNVHEPRRREY--------DFSGN----LDFVKFFKLVQDAGLYAILRIGPYVCAE 120 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~y-v~Wn~hEp~~G~f--------dF~g~----~dL~~fl~la~~~GL~Vilr~GPyi~aE 120 (651)
+.=+..|..|++..||.|+.| ..|.+|.|-++.= |+.++ .-+...|+.|++.|+.++.=--=|-+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 355779999999999999999 8899999977543 33343 3688999999999999985422122212
Q ss_pred c--CCCCCCccccc
Q 039348 121 W--NYGGFPMWLHN 132 (651)
Q Consensus 121 w--~~GG~P~WL~~ 132 (651)
. ..|=.|.|-.-
T Consensus 198 ~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 198 NYEEDGVSPEWGLY 211 (559)
T ss_dssp T--S--SS-GGBEE
T ss_pred CcccccCCchhhhh
Confidence 1 24557888764
No 101
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=71.81 E-value=1.6e+02 Score=32.20 Aligned_cols=238 Identities=10% Similarity=0.024 Sum_probs=104.2
Q ss_pred HHHHHHHHcCCCEEEE-------ccccCccCCcCceeecc-CchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcc
Q 039348 58 DLIQKAKDGGLDAIET-------YIFWNVHEPRRREYDFS-GNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMW 129 (651)
Q Consensus 58 ~~l~k~Ka~G~NtV~~-------yv~Wn~hEp~~G~fdF~-g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~W 129 (651)
+-++.+|++|+..|-. +-.|.-.-..-..-+-. ++.-+.+|.+.|+++||++-+=-.| ++|.....+.-
T Consensus 95 qW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~---~dw~~~~~~~~ 171 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP---WDWHHPDYPPD 171 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES---SSCCCTTTTSS
T ss_pred HHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc---hHhcCcccCCC
Confidence 3467899999996652 22254332221111111 2335778999999999988774322 25544332222
Q ss_pred cccCCCCccccCChhHHHHHH-HHHHHHHHHHHhccccccCCCcEEEecccccccccccccCcchHHHHHHHHHHHHhcC
Q 039348 130 LHNTPGIQLRTDNDIFKNEMQ-VFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKQYIKWCANMAVAQN 208 (651)
Q Consensus 130 L~~~p~i~~Rt~d~~y~~~~~-~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 208 (651)
..... .......+.+.+.++ .+..+|.+.+.+++. .+|=.=..... .....-...+.+++++..
T Consensus 172 ~~~~~-~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~------d~lWfDg~~~~--------~~~~~~~~~~~~~i~~~q 236 (346)
T PF01120_consen 172 EEGDE-NGPADGPGNWQRYYNEYWLAQLRELLTRYKP------DILWFDGGWPD--------PDEDWDSAELYNWIRKLQ 236 (346)
T ss_dssp CHCHH-CC--HCCHHHHHHHHHHHHHHHHHHHHCSTE------SEEEEESTTSC--------CCTHHHHHHHHHHHHHHS
T ss_pred ccCCc-ccccccchhhHhHhhhhhHHHHHHHHhCCCc------ceEEecCCCCc--------cccccCHHHHHHHHHHhC
Confidence 11100 000112334444444 445555555554321 11111110000 011222356666676665
Q ss_pred CCcCeEEecCCCCCCcccccCCCccc-CCCCCCC-CCCCceeee-cccccccccCCCCCCCCHHHHHHHHHHHHHcCCee
Q 039348 209 ISEPWIMCQQSDAPEPMINTCNGFYC-DQFKPNN-PKSPKMWTE-NWTGWFKLWGGRDPQRTAEDLAFSVARFFQNGGVL 285 (651)
Q Consensus 209 i~vP~~~~~~~~~~~~v~~t~ng~~~-~~~~~~~-~~~P~~~~E-~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~ 285 (651)
-++-+............ .+.+ +...+.. ...|--.+. .-.+||-. -.....++++++...+....++|+++
T Consensus 237 p~~ii~~r~~~~~~~~~-----d~~~~E~~~~~~~~~~pwE~~~ti~~~W~y~-~~~~~~ks~~~li~~l~~~vs~ngnl 310 (346)
T PF01120_consen 237 PDVIINNRWGGNEQGDG-----DYNTPERGIPGEIQGRPWETCTTIGPSWGYN-TPDEKYKSADELIDILVDSVSRNGNL 310 (346)
T ss_dssp TTSEEECCCSSCSSCCB-----SCCEECTTBTTTEEESEEEEEEESSSSSS-C-GGGCGS--HHHHHHHHHHHHTBTEEE
T ss_pred CeEEEecccCCCCCccc-----cccchhccCCCCCCCCCccccCcCCCCCccc-CCCCCcCCHHHHHHHHHHHhccCceE
Confidence 44332221111000000 0000 1111100 011211111 12344430 12234568888888888899998875
Q ss_pred eeeeEeeccCCCCCCCCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHHhhhhccc
Q 039348 286 NNYYMYHGGTNFGRTAGGPYIATSYDYNAPLDEYGNLNQPKWGHLKQLHASIKQAEKFL 344 (651)
Q Consensus 286 ~n~YM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pKy~~lr~l~~fl~~~~~~l 344 (651)
+ +| -+.+.+|.+..+.-..||++...|+...+.+
T Consensus 311 L-------------LN------------igP~~dG~ip~~~~~~L~e~G~Wl~~ngeaI 344 (346)
T PF01120_consen 311 L-------------LN------------IGPDPDGTIPEEQVERLREIGDWLKVNGEAI 344 (346)
T ss_dssp E-------------EE------------E---TTSS--HHHHHHHHHHHHHHHHHGGGT
T ss_pred E-------------Ee------------cCCCCCCCcCHHHHHHHHHHHHHHHhccccc
Confidence 3 11 1345678888888999999999999876654
No 102
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=71.10 E-value=8.2 Score=44.38 Aligned_cols=113 Identities=13% Similarity=0.214 Sum_probs=85.3
Q ss_pred chHHHHHHHHHcCCCEEEEccccCccCCc---CceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 039348 55 MWPDLIQKAKDGGLDAIETYIFWNVHEPR---RREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLH 131 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~---~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 131 (651)
.++++++.||++|++.-|.-|-|...=|. .+..+-.|..--..+|+...++||...+-. | -| .+|.||.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f---Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F---HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e---cC---CCCHHHH
Confidence 47899999999999999999999988885 246788888888899999999999876543 1 23 4899987
Q ss_pred c-CCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEec
Q 039348 132 N-TPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQ 177 (651)
Q Consensus 132 ~-~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 177 (651)
+ .-+-.-+..=+.|+++++--+++..+++| ....-|...|..++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 6 44432233345688888888999999888 33333555555554
No 103
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=70.59 E-value=9 Score=33.21 Aligned_cols=50 Identities=12% Similarity=0.258 Sum_probs=33.7
Q ss_pred cceeEEEeecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeec-cCCccEEEEEEeccC
Q 039348 495 KNMTLRVSTNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSL-KKGLNVISLLSVTVG 561 (651)
Q Consensus 495 ~~~~Lrv~s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l-~~g~n~LsiLv~nvG 561 (651)
....|++......++-||||+++|+.... .++... + ..|.++|++ +..-|
T Consensus 32 ~~l~l~a~~~~~~~~W~vdg~~~g~~~~~------------~~~~~~----~~~~G~h~l~v-vD~~G 82 (89)
T PF06832_consen 32 QPLVLKAAGGRGPVYWFVDGEPLGTTQPG------------HQLFWQ----PDRPGEHTLTV-VDAQG 82 (89)
T ss_pred ceEEEEEeCCCCcEEEEECCEEcccCCCC------------CeEEeC----CCCCeeEEEEE-EcCCC
Confidence 34566666655699999999999876654 123333 4 688888887 44444
No 104
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=70.17 E-value=16 Score=38.78 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=69.0
Q ss_pred EEEEEEeeCCCCCcc-chHH---HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCc
Q 039348 40 VIISGSIHYPRSTPE-MWPD---LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGP 115 (651)
Q Consensus 40 ~i~sG~~Hy~r~~~~-~W~~---~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GP 115 (651)
+-+++..|+..-+.. ..+. +|++-.++|.+.+-|=. .||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~----------~Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQL----------FYDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccc----------eecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 457888887664332 2222 33333369999888833 24555 7889999999997765444444
Q ss_pred eee---------eecCCCCCCcccccCCCC-ccccCChhHHHHHHHHHHHHHHHHHh
Q 039348 116 YVC---------AEWNYGGFPMWLHNTPGI-QLRTDNDIFKNEMQVFTTKIVNMCKE 162 (651)
Q Consensus 116 yi~---------aEw~~GG~P~WL~~~p~i-~~Rt~d~~y~~~~~~~~~~i~~~l~~ 162 (651)
..+ .+|..--+|.|+.+. + ....+++...+.--++..++++.+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~--l~~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSR--LEPIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 577777789999761 1 11233455667777788888888874
No 105
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=69.29 E-value=2 Score=44.09 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEe
Q 039348 57 PDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr 112 (651)
-...+.+.++|.+.|.+.++|....+..-.+..+ ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 5578899999999999999997766655444444 8999999999999999999
No 106
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=68.34 E-value=15 Score=29.70 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=43.0
Q ss_pred ccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEE
Q 039348 53 PEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAIL 111 (651)
Q Consensus 53 ~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vil 111 (651)
|..-.+.++-+.+.|+|..++|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4556788999999999999999732 333 58777755 5778999999999988754
No 107
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=67.84 E-value=8.7 Score=30.83 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=20.1
Q ss_pred CceEEEEecCCCCceeEEEeCCc-----------ceeeecCceEEEc
Q 039348 369 GERFCMLSNSDNTGDYTADLGED-----------GKFFVPAWSVTFL 404 (651)
Q Consensus 369 g~~~~Fl~N~~~~~~~~v~~~~~-----------g~~~lp~~sv~il 404 (651)
+..++|+-|+..+. .+|+++.. |.++|+|+.|.||
T Consensus 11 ~~~y~F~~N~s~~~-~~v~l~~~~~dll~g~~~~~~~~L~p~~v~Vl 56 (58)
T PF08533_consen 11 GGRYLFLLNFSDEP-QTVTLPESYTDLLTGETVSGGLTLPPYGVRVL 56 (58)
T ss_dssp ETTEEEEEE-SSS--EE----TT-EEEES-------SEE-TTEEEEE
T ss_pred CCEEEEEEECCCCC-EEEEcCCCceecccCcceeeEEEECCCEEEEE
Confidence 67899999987544 44555322 3589999999887
No 108
>PRK12677 xylose isomerase; Provisional
Probab=67.82 E-value=1.3e+02 Score=33.51 Aligned_cols=89 Identities=9% Similarity=0.147 Sum_probs=55.5
Q ss_pred chHHHHHHHHHcCCCEEEEccccCccCCcCceeecc---CchhHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCccc
Q 039348 55 MWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFS---GNLDFVKFFKLVQDAGLYAI-LRIGPYVCAEWNYGGFPMWL 130 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~---g~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL 130 (651)
.+++.+++++++|+..|+.. .+..--|+.+ -...+.++.++++++||.|. +-|.-|. -|.+.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~--------~p~~~ 97 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFT--------HPVFK 97 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCC--------Ccccc
Confidence 47899999999999999883 1111112111 11258899999999999976 4442111 12111
Q ss_pred ccCCCCccccCChhHHHHHHHHHHHHHHHHH
Q 039348 131 HNTPGIQLRTDNDIFKNEMQVFTTKIVNMCK 161 (651)
Q Consensus 131 ~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 161 (651)
.+ .+-+.|+..++...+.+.+.++.-+
T Consensus 98 ---~g-~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 98 ---DG-AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ---CC-cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 2456677777776677777666665
No 109
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=67.48 E-value=12 Score=43.65 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=40.4
Q ss_pred hHHHHHHHHHcCCCEEEE-ccccCccCCcC-cee----------eccCchhHHHHHHHHHHcCCEEEEec
Q 039348 56 WPDLIQKAKDGGLDAIET-YIFWNVHEPRR-REY----------DFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 56 W~~~l~k~Ka~G~NtV~~-yv~Wn~hEp~~-G~f----------dF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
+.+.|.-+|++|+++|-+ +++-. |.. .-| +|....||.++++.|+++||+|||..
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 457888999999999987 45422 111 122 23445799999999999999999874
No 110
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=67.41 E-value=17 Score=38.39 Aligned_cols=75 Identities=21% Similarity=0.388 Sum_probs=58.3
Q ss_pred cEEECCEEEEEEEEE--eeCCCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeecc--CchhHHHHHHHHHHcC
Q 039348 31 ALIIDGQRKVIISGS--IHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFS--GNLDFVKFFKLVQDAG 106 (651)
Q Consensus 31 ~~~idG~~~~i~sG~--~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~--g~~dL~~fl~la~~~G 106 (651)
.+.+.+.|++++.|= +| .++.-.+..+++|++|+..++.|.+=+...| +.|. |...+..+-+.|++.|
T Consensus 20 ~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g~~gl~~l~~~~~~~G 91 (266)
T PRK13398 20 DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLGEEGLKILKEVGDKYN 91 (266)
T ss_pred CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcHHHHHHHHHHHHHHcC
Confidence 366766788888872 33 5666778889999999999999988744443 3566 5678999999999999
Q ss_pred CEEEEec
Q 039348 107 LYAILRI 113 (651)
Q Consensus 107 L~Vilr~ 113 (651)
|.++-.|
T Consensus 92 l~~~te~ 98 (266)
T PRK13398 92 LPVVTEV 98 (266)
T ss_pred CCEEEee
Confidence 9988764
No 111
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=66.78 E-value=39 Score=37.80 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=56.4
Q ss_pred eCCCCCccchHHHHHHHHHcCCCEEEEccccCccCCcC----ceeeccCc---hhHHHHHHHHHHcCCEEEEecCceeee
Q 039348 47 HYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRR----REYDFSGN---LDFVKFFKLVQDAGLYAILRIGPYVCA 119 (651)
Q Consensus 47 Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~----G~fdF~g~---~dL~~fl~la~~~GL~Vilr~GPyi~a 119 (651)
+|+.+..+.-.+.+++++++|++.+.+==-|....... |.+--.-. .-|..+++.+++.||..=|+..|-+++
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 35556666677889999999999777655575432211 33321111 249999999999999999998887765
Q ss_pred ecC--CCCCCcccccCCC
Q 039348 120 EWN--YGGFPMWLHNTPG 135 (651)
Q Consensus 120 Ew~--~GG~P~WL~~~p~ 135 (651)
.=. +-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 211 2247999987654
No 112
>PLN02361 alpha-amylase
Probab=65.72 E-value=14 Score=41.48 Aligned_cols=57 Identities=7% Similarity=0.056 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCEEEEccccC---ccCCcCce-ee----ccCchhHHHHHHHHHHcCCEEEEec
Q 039348 57 PDLIQKAKDGGLDAIETYIFWN---VHEPRRRE-YD----FSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~Wn---~hEp~~G~-fd----F~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.+.|.-+|++|+++|-+.=+.. -|--.+.. |+ |....+|+++|+.|+++||+||+..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 3456678999999998753322 22222222 22 3445799999999999999999874
No 113
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=65.37 E-value=12 Score=39.04 Aligned_cols=52 Identities=13% Similarity=0.340 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCc
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGP 115 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GP 115 (651)
...++-++.+|+.||++|++ ..|..+++ ..+..++|+.++++||.|+--.|.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 56678888999999999998 56666665 457889999999999999987764
No 114
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=64.06 E-value=36 Score=35.15 Aligned_cols=97 Identities=7% Similarity=0.030 Sum_probs=58.5
Q ss_pred Cceeecc-CchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHh
Q 039348 84 RREYDFS-GNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKE 162 (651)
Q Consensus 84 ~G~fdF~-g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 162 (651)
.|...+. +..++..+++.|++.|++|++.+|= |..+. +.. + ..++. .-+++.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~~----~---~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FTA----A---LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---chh----h---hcCHH---HHHHHHHHHHHHHHH
Confidence 4666664 3357889999999999999999861 21111 110 1 12332 335788899999997
Q ss_pred ccccccCCCcEEEecccccccccccccCcchHHHHHHHHHHHHhcCC
Q 039348 163 ANLFASQGGPIILAQIENEYGNIMEKYGDAGKQYIKWCANMAVAQNI 209 (651)
Q Consensus 163 ~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi 209 (651)
+++ + ++.|+=|+.... ...-..+++.|++.+.+.|.
T Consensus 98 ~~~---D-----GIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~~ 133 (253)
T cd06545 98 YNL---D-----GIDVDLEGPDVT---FGDYLVFIRALYAALKKEGK 133 (253)
T ss_pred hCC---C-----ceeEEeeccCcc---HhHHHHHHHHHHHHHhhcCc
Confidence 765 1 456676775321 11223566667777665554
No 115
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=63.52 E-value=57 Score=35.46 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=45.6
Q ss_pred CccchHHHHHHHHHcCCCEEEEccc----cCccCCc------C-----------ceeeccCchhHHHHHHHHHHcCCEEE
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIF----WNVHEPR------R-----------REYDFSGNLDFVKFFKLVQDAGLYAI 110 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~----Wn~hEp~------~-----------G~fdF~g~~dL~~fl~la~~~GL~Vi 110 (651)
+.+...+.|..|-..++|+...++- |.+.-+. . |.|. ..++.++++.|++.|+.||
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT---~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT---QEDYKDIVAYAAERHITVV 92 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC---HHHHHHHHHHHHHcCCEEE
Confidence 7788899999999999999998874 6443211 2 2333 3499999999999999999
Q ss_pred Eec
Q 039348 111 LRI 113 (651)
Q Consensus 111 lr~ 113 (651)
--+
T Consensus 93 PEi 95 (329)
T cd06568 93 PEI 95 (329)
T ss_pred Eec
Confidence 653
No 116
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=62.41 E-value=15 Score=40.17 Aligned_cols=72 Identities=25% Similarity=0.302 Sum_probs=57.2
Q ss_pred EEEEeeCCCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCce-eeccCchhHHHHHHHHHHcCCEEEEecCceeeee
Q 039348 42 ISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRRE-YDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAE 120 (651)
Q Consensus 42 ~sG~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~-fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aE 120 (651)
+|=++.+.|.+.+.=..-|++|...|+.-|-| ++|.|.+.. --|. -+.++++.|++.||+||+..-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 45567777888887788999999999988766 677777652 1133 688999999999999999998877655
No 117
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=62.03 E-value=14 Score=45.38 Aligned_cols=21 Identities=14% Similarity=0.483 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 039348 93 LDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 93 ~dL~~fl~la~~~GL~Vilr~ 113 (651)
.+++++|+.|+++||.|||..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999873
No 118
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=60.86 E-value=22 Score=38.06 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=51.1
Q ss_pred CCCCccchHHHHHHHHHcCCC--EEEEccccCccCCcCceeeccC--chhHHHHHHHHHHcCCEEEEecCceeee
Q 039348 49 PRSTPEMWPDLIQKAKDGGLD--AIETYIFWNVHEPRRREYDFSG--NLDFVKFFKLVQDAGLYAILRIGPYVCA 119 (651)
Q Consensus 49 ~r~~~~~W~~~l~k~Ka~G~N--tV~~yv~Wn~hEp~~G~fdF~g--~~dL~~fl~la~~~GL~Vilr~GPyi~a 119 (651)
.....+.-.+.++++++.|+. +|-+=..|. ..-|.|.|.- --|..++++..++.|+++++..=|+|+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 345667788999999999964 555544453 3456666643 2489999999999999999998888864
No 119
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=60.11 E-value=14 Score=47.11 Aligned_cols=56 Identities=30% Similarity=0.437 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCEEEE-ccccCccCCc---Cce-----ee----------cc--CchhHHHHHHHHHHcCCEEEEec
Q 039348 58 DLIQKAKDGGLDAIET-YIFWNVHEPR---RRE-----YD----------FS--GNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 58 ~~l~k~Ka~G~NtV~~-yv~Wn~hEp~---~G~-----fd----------F~--g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
+.|.-+|++|+|+|++ +|+=...|.. .|. || |. +..++.++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999997 5653222211 110 21 23 56789999999999999999983
No 120
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=60.05 E-value=14 Score=44.18 Aligned_cols=55 Identities=22% Similarity=0.403 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCEEEE-ccccCccC---CcCc-----ee---e-------c---cCchhHHHHHHHHHHcCCEEEEec
Q 039348 59 LIQKAKDGGLDAIET-YIFWNVHE---PRRR-----EY---D-------F---SGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~-yv~Wn~hE---p~~G-----~f---d-------F---~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.|.-+|++|+|+|.+ +|+=...+ ...| -| | | ....+|.+||+.|+++||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999996 46511111 1111 01 1 1 124689999999999999999984
No 121
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=58.34 E-value=34 Score=38.11 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=42.4
Q ss_pred CCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 51 STPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 51 ~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
+..+.|+++|+.+|++||+....=+- ....+.. .-|...++.|++.|+++.|-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 37889999999999999999887443 1222222 368889999999999999886
No 122
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=58.16 E-value=22 Score=38.35 Aligned_cols=62 Identities=23% Similarity=0.268 Sum_probs=40.8
Q ss_pred CccchHHHHHHHHHcCCCEEEEcccc---CccCCcCceeecc-----CchhHHHHHHHHHHcCCEEEEec
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFW---NVHEPRRREYDFS-----GNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~W---n~hEp~~G~fdF~-----g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.+..-.++++.+|..|+|++-+=+-= ++.=|....+.=. -..|+..||+.|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEE
Confidence 44556789999999999998753221 1111222211100 01399999999999999999995
No 123
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=58.14 E-value=82 Score=30.28 Aligned_cols=103 Identities=16% Similarity=0.121 Sum_probs=63.8
Q ss_pred chHHHHHHHHHcCCCEEEEccc--cCccCC----cCceeeccCchhHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCC
Q 039348 55 MWPDLIQKAKDGGLDAIETYIF--WNVHEP----RRREYDFSGNLDFVKFFKLVQDAGLYAI-LRIGPYVCAEWNYGGFP 127 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~yv~--Wn~hEp----~~G~fdF~g~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P 127 (651)
.-++..+.+++.|+..+....+ |..... .+.+ .-.....+.+.+++|++.|...+ +.+|. .+
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------~~ 96 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------YP 96 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT----------ES
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc----------cc
Confidence 4567778889999997776544 433211 1111 11123589999999999999865 55542 00
Q ss_pred cccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEeccccccccc
Q 039348 128 MWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNI 185 (651)
Q Consensus 128 ~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~ 185 (651)
. ......+.-.+.+.+.+++++++.++++ |.+-+||..+..
T Consensus 97 ~--------~~~~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 97 S--------GPEDDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp S--------STTSSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred c--------ccCCCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 0 0112234566777888889999988543 356788888753
No 124
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=57.89 E-value=17 Score=39.23 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=48.2
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCCcCc--eeeccCch--hHHHHHHHHHHcCCEEEEecCcee
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRR--EYDFSGNL--DFVKFFKLVQDAGLYAILRIGPYV 117 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G--~fdF~g~~--dL~~fl~la~~~GL~Vilr~GPyi 117 (651)
..+.-.+.++++++.||-+=.+.+=|.... ..+ .|+|.-.+ |..++|+..+++|++|++..=|+|
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 455568899999999887755555554433 234 77776433 899999999999999998876665
No 125
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=56.84 E-value=24 Score=43.05 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=44.6
Q ss_pred CccchHHHHHHHHHcCCCEEEE-ccccC----ccCCcCc-----eeeccCchhHHHHHHHHHHcCCEEEEecCc
Q 039348 52 TPEMWPDLIQKAKDGGLDAIET-YIFWN----VHEPRRR-----EYDFSGNLDFVKFFKLVQDAGLYAILRIGP 115 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~-yv~Wn----~hEp~~G-----~fdF~g~~dL~~fl~la~~~GL~Vilr~GP 115 (651)
+-+.|.+.|.-++++|+++|-+ +++=+ .|--..- .-.|.+..++.+|++.|+++||.|||.+=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3345888999999999999976 44311 1111000 113457789999999999999999988533
No 126
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=56.83 E-value=32 Score=35.93 Aligned_cols=65 Identities=12% Similarity=0.229 Sum_probs=49.2
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCCcCcee--eccC--chhHHHHHHHHHHcCCEEEEecCcee
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREY--DFSG--NLDFVKFFKLVQDAGLYAILRIGPYV 117 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~f--dF~g--~~dL~~fl~la~~~GL~Vilr~GPyi 117 (651)
..+...+.++.+++.||-+=.+.+=+...+. .+.| +|.- --|..++++..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5566788999999999986666655554443 3556 5432 24899999999999999999987776
No 127
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=56.40 E-value=19 Score=45.36 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 039348 93 LDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 93 ~dL~~fl~la~~~GL~Vilr~ 113 (651)
.+|.++|+.|+++||.|||..
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999984
No 128
>PRK03705 glycogen debranching enzyme; Provisional
Probab=55.32 E-value=21 Score=42.59 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCEEEE-ccccCccCCcC---c-----eee----------ccC-----chhHHHHHHHHHHcCCEEEEec
Q 039348 59 LIQKAKDGGLDAIET-YIFWNVHEPRR---R-----EYD----------FSG-----NLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~-yv~Wn~hEp~~---G-----~fd----------F~g-----~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.|.-+|++|+|+|.+ +|+=...++.. | -|| |.. ..+++++++.|+++||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999996 45422112110 1 011 221 1479999999999999999973
No 129
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=55.31 E-value=24 Score=46.19 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=45.1
Q ss_pred CccchHHHHHHHHHcCCCEEEEc-cccCccCCcCc---ee----------eccCchhHHHHHHHHHHcCCEEEEecCc
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETY-IFWNVHEPRRR---EY----------DFSGNLDFVKFFKLVQDAGLYAILRIGP 115 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~y-v~Wn~hEp~~G---~f----------dF~g~~dL~~fl~la~~~GL~Vilr~GP 115 (651)
+-+.|.+.|.-+|++|+|+|-+- +| +..+| -| .|.+..++.+|++.|+++||.|||..=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 45668999999999999999863 43 11122 11 2456789999999999999999987533
No 130
>PLN02877 alpha-amylase/limit dextrinase
Probab=55.13 E-value=23 Score=43.92 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 039348 93 LDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 93 ~dL~~fl~la~~~GL~Vilr~ 113 (651)
.+++++|+.|+++||.|||..
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999883
No 131
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=53.69 E-value=23 Score=38.58 Aligned_cols=74 Identities=12% Similarity=0.219 Sum_probs=55.3
Q ss_pred eeCCCC---CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCc--hhH--HHHHHHHHHcCCEEEEecCceee
Q 039348 46 IHYPRS---TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGN--LDF--VKFFKLVQDAGLYAILRIGPYVC 118 (651)
Q Consensus 46 ~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~dL--~~fl~la~~~GL~Vilr~GPyi~ 118 (651)
+|.+|. ..+.-++.++++++.||.+=.+.+=+.++.. .+.|+|... -|. .++++..++.|++|++..=|+++
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 4566789999999999987666554444432 467776653 377 99999999999999999989987
Q ss_pred ee
Q 039348 119 AE 120 (651)
Q Consensus 119 aE 120 (651)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 132
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=53.56 E-value=29 Score=42.58 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=44.4
Q ss_pred CccchHHHHHHHHHcCCCEEEE-ccccC----ccCCcCc-----eeeccCchhHHHHHHHHHHcCCEEEEecCc
Q 039348 52 TPEMWPDLIQKAKDGGLDAIET-YIFWN----VHEPRRR-----EYDFSGNLDFVKFFKLVQDAGLYAILRIGP 115 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~-yv~Wn----~hEp~~G-----~fdF~g~~dL~~fl~la~~~GL~Vilr~GP 115 (651)
+-+.+.+.|.-++++|+|+|-+ +++=+ .|--..- .-.|.+..++.+|++.|+++||.|||.+=|
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3456889999999999999986 34311 1110000 012446689999999999999999998644
No 133
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=52.62 E-value=25 Score=37.91 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=48.4
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccC--C---cCceeeccCc--hhHHHHHHHHHHcCCEEEEecCceee
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHE--P---RRREYDFSGN--LDFVKFFKLVQDAGLYAILRIGPYVC 118 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hE--p---~~G~fdF~g~--~dL~~fl~la~~~GL~Vilr~GPyi~ 118 (651)
..+...+.++++++.||-+=.+.+-+.++. . .-|.|+|.-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 456678999999999987655555433333 1 2356666532 38999999999999999998877765
No 134
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=51.29 E-value=64 Score=38.64 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=66.8
Q ss_pred cchHHHHHHHHHcCCCEEE---------------EccccCccCCcCceeeccCchhHHH-HHHHHHHcCCEEEEecCcee
Q 039348 54 EMWPDLIQKAKDGGLDAIE---------------TYIFWNVHEPRRREYDFSGNLDFVK-FFKLVQDAGLYAILRIGPYV 117 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~---------------~yv~Wn~hEp~~G~fdF~g~~dL~~-fl~la~~~GL~Vilr~GPyi 117 (651)
+.-...|+.+|++|+|||- .|++| -|=| |+-|. +++ ...++.+.|+.|..|..||-
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~-----f~~~aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADL-----FNRVAWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCC-----cCHHHHHHHHhhCCEEEEecccee
Confidence 3467889999999999985 56677 4433 23221 112 34458999999999999985
Q ss_pred ee---------ecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccc
Q 039348 118 CA---------EWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEY 182 (651)
Q Consensus 118 ~a---------Ew~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEy 182 (651)
.. +++..+-|...+ |+-..| =.+|..++++|++.|.+-|+++ .+|=++|..-+-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 406 FDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred eccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 32 111111121111 110112 2357788999999999988854 245566665553
No 135
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=51.08 E-value=26 Score=38.07 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=53.5
Q ss_pred eeCCCC---CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCc--hhHHHHHHHHHHcCCEEEEecCceeeee
Q 039348 46 IHYPRS---TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGN--LDFVKFFKLVQDAGLYAILRIGPYVCAE 120 (651)
Q Consensus 46 ~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~dL~~fl~la~~~GL~Vilr~GPyi~aE 120 (651)
+|..|. ..+.-++.++++++.||.+=.+.+-+... ...+.|+|.-. -|..++++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 345553 45556888999999998866655443222 34566777543 3899999999999999999999999854
No 136
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=50.23 E-value=28 Score=36.58 Aligned_cols=50 Identities=28% Similarity=0.274 Sum_probs=37.3
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
...++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 78 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 456799999999999 787777666422 23344444459999999999987
No 137
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=49.04 E-value=28 Score=37.50 Aligned_cols=73 Identities=8% Similarity=0.132 Sum_probs=52.6
Q ss_pred eeCCCC---CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCc--hhHHHHHHHHHHcCCEEEEecCceeee
Q 039348 46 IHYPRS---TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGN--LDFVKFFKLVQDAGLYAILRIGPYVCA 119 (651)
Q Consensus 46 ~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~dL~~fl~la~~~GL~Vilr~GPyi~a 119 (651)
+|..|. ..+..++.++++++.+|-+=.+.+-+.... ..+.|+|... -|..+|++..++.|++|++..=|+|..
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 455554 556678999999999987655554432222 3456766543 389999999999999999988888863
No 138
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.91 E-value=36 Score=36.68 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=46.2
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCC---cCceeeccCc--hhHHHHHHHHHHcCCEEEEecCceee
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEP---RRREYDFSGN--LDFVKFFKLVQDAGLYAILRIGPYVC 118 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp---~~G~fdF~g~--~dL~~fl~la~~~GL~Vilr~GPyi~ 118 (651)
+.-.+.++++++.||-+=.+.+-+....- ....|+|.-. -|..++++..+++|++|++..=|+|+
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 45678899999999976666544322221 1234666422 38999999999999999998877764
No 139
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=48.79 E-value=36 Score=35.54 Aligned_cols=50 Identities=30% Similarity=0.374 Sum_probs=41.2
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
-..++|++|++.|-+ -|..++--|.-+ ..++.+=++.|.++||.+|+++|
T Consensus 76 S~~mL~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 76 SAEMLKDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred CHHHHHHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 456799999999999 677776665433 56899999999999999999987
No 140
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=48.69 E-value=39 Score=33.53 Aligned_cols=88 Identities=14% Similarity=0.238 Sum_probs=55.6
Q ss_pred EEEeeCCCCC-----ccchHHHHHHHHHcCCCEEEEccccCccCCcCceeec--cC-chhHHHHHHHHHHcCCEEEEecC
Q 039348 43 SGSIHYPRST-----PEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDF--SG-NLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 43 sG~~Hy~r~~-----~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF--~g-~~dL~~fl~la~~~GL~Vilr~G 114 (651)
-|.+||++.. .++.+.-++.++..++.. ...|--.|..++.+.- +- ...+.+|++..+++|.++++-.+
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 3889998753 456777888888865432 1123444543343321 10 14688999999999999999888
Q ss_pred ceeee----ec---CCCCCCcccccC
Q 039348 115 PYVCA----EW---NYGGFPMWLHNT 133 (651)
Q Consensus 115 Pyi~a----Ew---~~GG~P~WL~~~ 133 (651)
++-.- .. +....|.|+...
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecCC
Confidence 75221 11 145689999874
No 141
>PRK09875 putative hydrolase; Provisional
Probab=47.72 E-value=1.1e+02 Score=32.86 Aligned_cols=89 Identities=11% Similarity=0.073 Sum_probs=56.8
Q ss_pred eEEeeCCcEEECCEEEEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHH
Q 039348 24 KVEYDANALIIDGQRKVIISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQ 103 (651)
Q Consensus 24 ~v~~d~~~~~idG~~~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~ 103 (651)
-+++-+..++++..++. +......-..+.=...|+.+|++|.+||-- ..+ ..-.+|...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd--------~T~----~g~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVIE--------MTN----RYMGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEEe--------cCC----CccCcCHHHHHHHHH
Confidence 35666667776653211 111111112333456788899999998742 222 112479999999999
Q ss_pred HcCCEEEEecCceeeeecCCCCCCccccc
Q 039348 104 DAGLYAILRIGPYVCAEWNYGGFPMWLHN 132 (651)
Q Consensus 104 ~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 132 (651)
+-|+.+|..+|-|.... +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999885322 6888764
No 142
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=46.96 E-value=51 Score=36.18 Aligned_cols=76 Identities=21% Similarity=0.370 Sum_probs=57.0
Q ss_pred cEEECCEEEEEEEEEeeCCCC-CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccC--chhHHHHHHHHHHcCC
Q 039348 31 ALIIDGQRKVIISGSIHYPRS-TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSG--NLDFVKFFKLVQDAGL 107 (651)
Q Consensus 31 ~~~idG~~~~i~sG~~Hy~r~-~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g--~~dL~~fl~la~~~GL 107 (651)
.+.+.|.+++++.| +--+ .++.-.+.-+.+|++|.+.++.|+|= |+---|.|.| ..-|.-+.+.|++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 36677788888888 3333 55666777888899999999999995 4433367775 5678778888999999
Q ss_pred EEEEec
Q 039348 108 YAILRI 113 (651)
Q Consensus 108 ~Vilr~ 113 (651)
.++-.+
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 988764
No 143
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=46.78 E-value=62 Score=27.10 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=21.6
Q ss_pred eeEEEe---ecCcEEEEEECCEEEEEEEcc
Q 039348 497 MTLRVS---TNGHGLHAYVNGKLIGSQFSR 523 (651)
Q Consensus 497 ~~Lrv~---s~~h~~~vfvNG~~vgt~~~~ 523 (651)
..|+|. ...|.|-||++++++|+.+..
T Consensus 16 ~~i~v~~rpk~~dsaEV~~g~EfiGvi~~D 45 (63)
T PF11324_consen 16 PGITVKARPKKDDSAEVYIGDEFIGVIYRD 45 (63)
T ss_pred CceEEEcCCCCCCceEEEeCCEEEEEEEee
Confidence 345555 348999999999999999865
No 144
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=46.54 E-value=31 Score=38.54 Aligned_cols=70 Identities=13% Similarity=0.279 Sum_probs=47.3
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCc--hhHHHHHHHHHHcCCEEEEecCceeeeecC
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGN--LDFVKFFKLVQDAGLYAILRIGPYVCAEWN 122 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~dL~~fl~la~~~GL~Vilr~GPyi~aEw~ 122 (651)
..+...+.++.+++.|+-.=.+.+-..... ..+.|.|... -|+.++++.+++.|+++++..-|+|+-+-.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 455567899999999988766655433222 4445555432 289999999999999999999999976644
No 145
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=46.52 E-value=47 Score=36.40 Aligned_cols=115 Identities=16% Similarity=0.320 Sum_probs=67.4
Q ss_pred EEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCccccCChhHHHHH
Q 039348 70 AIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEM 149 (651)
Q Consensus 70 tV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~ 149 (651)
.|.+.|+|+++--+. -=...++.|+++|+.|+-- |.=||+ +-+.|+.. + +.. ++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~---l-L~~-~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGT----FIFEWT--GQVEWLED---F-LKK-DE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHH---H-hcc-Cc---ccc
Confidence 477788888753220 0125688999999999743 234665 34556653 1 221 11 223
Q ss_pred HHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCcchHHHHHHHHHHHHhc--CCCcCeEE
Q 039348 150 QVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKQYIKWCANMAVAQ--NISEPWIM 215 (651)
Q Consensus 150 ~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~--gi~vP~~~ 215 (651)
.++.++|+++.+.+++ +| +.+-+|+..+... ....=.+|++.|++.+++. +..|-|+-
T Consensus 89 ~~~a~kLv~lak~yGf---DG---w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 89 FPVADKLVEVAKYYGF---DG---WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred hHHHHHHHHHHHHhCC---Cc---eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 5678889998887664 33 6777888873110 1123356777777777764 33445553
No 146
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=46.17 E-value=1.6e+02 Score=26.92 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=43.7
Q ss_pred EEEEEEEeecCCcccceeEEEeecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeeccCC-ccEEEEEEec
Q 039348 481 LWYMTSVDTRNISLKNMTLRVSTNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKKG-LNVISLLSVT 559 (651)
Q Consensus 481 lwY~T~v~~~~~~~~~~~Lrv~s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~g-~n~LsiLv~n 559 (651)
+-++..|..+.+ ..-.+++. ..+.+.+||||+.+....+.+. +-............+.|..| .+.|.|...+
T Consensus 48 ~~~~G~~~~~~~--G~y~f~~~-~~d~~~l~idg~~vid~~~~~~----~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 48 VRWTGYFKPPET--GTYTFSLT-SDDGARLWIDGKLVIDNWGNQG----GGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEEEEEEESSS--EEEEEEEE-ESSEEEEEETTEEEEECSCTTT----STTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEecccC--ceEEEEEE-ecccEEEEECCEEEEcCCcccc----ccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 567777787622 23344444 5778999999999998886510 00000112344455566664 5788887766
Q ss_pred cC
Q 039348 560 VG 561 (651)
Q Consensus 560 vG 561 (651)
.+
T Consensus 121 ~~ 122 (145)
T PF07691_consen 121 RG 122 (145)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 147
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=44.92 E-value=69 Score=37.57 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=34.5
Q ss_pred CcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeeccCCccEEEEEEe
Q 039348 505 GHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKKGLNVISLLSV 558 (651)
Q Consensus 505 ~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~g~n~LsiLv~ 558 (651)
...+.|+|||+.+++..-.. .+ .....++++++..+..|.|+|+|-..
T Consensus 62 ~S~L~V~lNg~~v~s~~l~~--~~----~~~~~~~i~Ip~~l~~g~N~l~~~~~ 109 (605)
T PF03170_consen 62 RSQLTVSLNGQPVGSIPLDA--ES----AQPQTVTIPIPPALIKGFNRLTFEFI 109 (605)
T ss_pred cceEEEEECCEEeEEEecCc--CC----CCceEEEEecChhhcCCceEEEEEEE
Confidence 45799999999999987551 11 00134778888778889999987544
No 148
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=44.60 E-value=1.2e+02 Score=33.06 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=55.3
Q ss_pred eeCCCC---CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCc--hhHHHHHHHHHHcCCEEEEecCceee
Q 039348 46 IHYPRS---TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGN--LDFVKFFKLVQDAGLYAILRIGPYVC 118 (651)
Q Consensus 46 ~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~dL~~fl~la~~~GL~Vilr~GPyi~ 118 (651)
+|.+|+ ..+..++.++++++.+|-+=.+++=|..+. .-+.|.|... -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 565664 566788999999999987666665555543 3466777643 38899999999999999998888887
No 149
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=44.49 E-value=38 Score=29.37 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=24.4
Q ss_pred CCCcEEEeccccc-cccccccc----Cc-chHHHHHHHHH---HHHhcCCCcCeEE
Q 039348 169 QGGPIILAQIENE-YGNIMEKY----GD-AGKQYIKWCAN---MAVAQNISEPWIM 215 (651)
Q Consensus 169 ~gGpII~~QIENE-yg~~~~~~----~~-~~~~y~~~l~~---~~~~~gi~vP~~~ 215 (651)
....|.+|+|-|| -++....+ +. ....|.+||++ .+|+.+-..|+..
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 3458999999999 55221111 11 13455555555 4567777788654
No 150
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=44.14 E-value=46 Score=33.95 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=37.4
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
...++|++|++.|-+ -|..++ |..+ |+.+=++.|.++||.+|++.
T Consensus 73 S~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 456799999999998 676666 5544 69999999999999999986
No 151
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.00 E-value=1.1e+02 Score=32.84 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=43.4
Q ss_pred CccchHHHHHHHHHcCCCEEEEccc----cCcc-CCc--CceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIF----WNVH-EPR--RREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~----Wn~h-Ep~--~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
+.+.-.+.|+.|...|+|.+..|+- +.-+ |-. +|.|.- .+++++++.|++.|+.||-.+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC
Confidence 4466789999999999999998743 3222 111 344433 499999999999999999653
No 152
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=43.77 E-value=42 Score=36.42 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=52.0
Q ss_pred eeCCCC---CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCc--hhHHHHHHHHHHcCCEEEEecCceeee
Q 039348 46 IHYPRS---TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGN--LDFVKFFKLVQDAGLYAILRIGPYVCA 119 (651)
Q Consensus 46 ~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~--~dL~~fl~la~~~GL~Vilr~GPyi~a 119 (651)
+|..|. ..+...+.++++++.||-+=.+.+=+.+.. .-+.|+|.-. -|..++++..+++|+++++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455553 455678899999999987655444333332 3445666532 378999999999999999988888864
No 153
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=43.72 E-value=2.1e+02 Score=31.30 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=44.9
Q ss_pred CccchHHHHHHHHHcCCCEEEEccc----cCccCCc------Cc------eeeccCchhHHHHHHHHHHcCCEEEEe
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIF----WNVHEPR------RR------EYDFSGNLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~----Wn~hEp~------~G------~fdF~g~~dL~~fl~la~~~GL~Vilr 112 (651)
+.+..++.|..|-...+|+...++- |.+--+. .| .|.- .|+..+++.|++.|+.||..
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~---~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTP---EDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECH---HHHHHHHHHHHHcCCEEEEe
Confidence 5788899999999999999998763 5443221 23 3433 49999999999999999966
No 154
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=43.35 E-value=76 Score=34.73 Aligned_cols=116 Identities=24% Similarity=0.430 Sum_probs=74.2
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCccc
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI-LRIGPYVCAEWNYGGFPMWL 130 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL 130 (651)
....|+.--.-.+.+||-+|.+|-+|+.-+-. + |+..||...+.+--+.| +.. .||-=++|
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---~------d~e~~Lsdl~~APe~si~iLh---aCAhNPTG------ 192 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKC---V------DLEGFLSDLESAPEGSIIILH---ACAHNPTG------ 192 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCce---e------cHHHHHHHHhhCCCCcEEeee---ccccCCCC------
Confidence 55679999999999999999999999976543 3 67788888887765533 332 46654443
Q ss_pred ccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcE--EEecccccccccccccCcchHHHHHHHHHHHHhcC
Q 039348 131 HNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPI--ILAQIENEYGNIMEKYGDAGKQYIKWCANMAVAQN 208 (651)
Q Consensus 131 ~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpI--I~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 208 (651)
| || .+.=+..|++.|++..++ |+ |+.| |. +.|+.+++ .|+.+.+.+.|
T Consensus 193 -----m-----DP-----T~EQW~qia~vik~k~lf-----~fFDiAYQ-----Gf---ASGD~~~D--awAiR~fV~~g 242 (410)
T KOG1412|consen 193 -----M-----DP-----TREQWKQIADVIKSKNLF-----PFFDIAYQ-----GF---ASGDLDAD--AWAIRYFVEQG 242 (410)
T ss_pred -----C-----CC-----CHHHHHHHHHHHHhcCce-----eeeehhhc-----cc---ccCCcccc--HHHHHHHHhcC
Confidence 2 11 122234577777765543 22 3445 32 23433333 58888888888
Q ss_pred CCcCeEEec
Q 039348 209 ISEPWIMCQ 217 (651)
Q Consensus 209 i~vP~~~~~ 217 (651)
.++|.|+
T Consensus 243 --~e~fv~Q 249 (410)
T KOG1412|consen 243 --FELFVCQ 249 (410)
T ss_pred --CeEEEEh
Confidence 5788876
No 155
>PRK14566 triosephosphate isomerase; Provisional
Probab=41.80 E-value=70 Score=33.88 Aligned_cols=50 Identities=32% Similarity=0.310 Sum_probs=39.9
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
-..++|++|++.|-+ -|..++..|.= -...+.+=++.|.++||.+|++.|
T Consensus 87 S~~mL~d~G~~~vii-----GHSERR~~f~E-td~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 87 SGQMLKDAGCRYVII-----GHSERRRMYGE-TSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCCCCc-CHHHHHHHHHHHHHCCCEEEEEcC
Confidence 345799999999998 67777766642 245677788999999999999987
No 156
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.80 E-value=50 Score=36.06 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=50.0
Q ss_pred eeCCCC---CccchHHHHHHHHHcCCCEEEEcc----------ccCccCCc---------CceeeccC---chhHHHHHH
Q 039348 46 IHYPRS---TPEMWPDLIQKAKDGGLDAIETYI----------FWNVHEPR---------RREYDFSG---NLDFVKFFK 100 (651)
Q Consensus 46 ~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv----------~Wn~hEp~---------~G~fdF~g---~~dL~~fl~ 100 (651)
+|..|. ..+.-++.++++++.||-+=.+++ .|+-..-. -+.++|.. --|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 565664 445668899999999997666544 24432211 13334431 128999999
Q ss_pred HHHHcCCEEEEecCceee
Q 039348 101 LVQDAGLYAILRIGPYVC 118 (651)
Q Consensus 101 la~~~GL~Vilr~GPyi~ 118 (651)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888875
No 157
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=41.19 E-value=1.1e+02 Score=33.69 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=44.9
Q ss_pred CccchHHHHHHHHHcCCCEEEEccc----cCccC----------------------------CcCceeeccCchhHHHHH
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIF----WNVHE----------------------------PRRREYDFSGNLDFVKFF 99 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~----Wn~hE----------------------------p~~G~fdF~g~~dL~~fl 99 (651)
+.+...+.|..|...++|+...++- |.+-- +..|.|.- .|+++++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EEIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HHHHHHH
Confidence 6788899999999999999998763 42211 11244543 4999999
Q ss_pred HHHHHcCCEEEEec
Q 039348 100 KLVQDAGLYAILRI 113 (651)
Q Consensus 100 ~la~~~GL~Vilr~ 113 (651)
+.|+++|+.||--+
T Consensus 93 ~yA~~rgI~VIPEI 106 (357)
T cd06563 93 AYAAERGITVIPEI 106 (357)
T ss_pred HHHHHcCCEEEEec
Confidence 99999999999653
No 158
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=40.74 E-value=42 Score=40.32 Aligned_cols=55 Identities=27% Similarity=0.402 Sum_probs=41.4
Q ss_pred HHHHHHHcCCCEEEE-ccccCccCCcC---c-eeec----------------cC-----chhHHHHHHHHHHcCCEEEEe
Q 039348 59 LIQKAKDGGLDAIET-YIFWNVHEPRR---R-EYDF----------------SG-----NLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~-yv~Wn~hEp~~---G-~fdF----------------~g-----~~dL~~fl~la~~~GL~Vilr 112 (651)
.|.-+|++|+++|+. +|+.-..|+.. | .|+| .+ .+.+..+|+.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 489999999999996 68865555543 2 2222 22 257899999999999999998
Q ss_pred c
Q 039348 113 I 113 (651)
Q Consensus 113 ~ 113 (651)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 159
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=40.70 E-value=1.4e+02 Score=33.82 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=64.7
Q ss_pred eeCCCC--CccchHHHHHHHHHcCCCEEEE-ccccCccC--C--cCceeecc-----C-----chhHHHHHHHHH-HcCC
Q 039348 46 IHYPRS--TPEMWPDLIQKAKDGGLDAIET-YIFWNVHE--P--RRREYDFS-----G-----NLDFVKFFKLVQ-DAGL 107 (651)
Q Consensus 46 ~Hy~r~--~~~~W~~~l~k~Ka~G~NtV~~-yv~Wn~hE--p--~~G~fdF~-----g-----~~dL~~fl~la~-~~GL 107 (651)
-+.+++ +-+.|++.|+.+++.|+|+|.. ++---... | ...+..|+ . ..++.++++.++ ++||
T Consensus 12 Tvlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~l 91 (423)
T PF14701_consen 12 TVLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGL 91 (423)
T ss_pred EEhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCc
Confidence 344554 4468999999999999999973 22111110 0 11122111 1 148999999985 7999
Q ss_pred EEEEecCceeeeecCCCCC-CcccccCCCCccccCChhHHHHHH---HHHHHHHHHHH
Q 039348 108 YAILRIGPYVCAEWNYGGF-PMWLHNTPGIQLRTDNDIFKNEMQ---VFTTKIVNMCK 161 (651)
Q Consensus 108 ~Vilr~GPyi~aEw~~GG~-P~WL~~~p~i~~Rt~d~~y~~~~~---~~~~~i~~~l~ 161 (651)
.++... + |+.-.. =.||..+|+.-.-..+.|+|+.+- +.+-++...|.
T Consensus 92 l~~~Dv---V---~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL~~fS~~l~ 143 (423)
T PF14701_consen 92 LSMTDV---V---LNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRALLEFSKDLE 143 (423)
T ss_pred eEEEEE---e---eccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 987653 1 333222 469999998655545556665543 33444444444
No 160
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=40.66 E-value=1e+02 Score=32.41 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=68.0
Q ss_pred EEEEEEEeeCCCCCccc-h---HHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEE--EEe
Q 039348 39 KVIISGSIHYPRSTPEM-W---PDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYA--ILR 112 (651)
Q Consensus 39 ~~i~sG~~Hy~r~~~~~-W---~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~V--ilr 112 (651)
.+-+++..|+.+-|... - .++|++=.++|.+.+-|=. .||.+ .+.+|++.|++.|+.+ ++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~----------~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQL----------FFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeecc----------ccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 36788888877643322 1 2445566678999888722 35555 7889999999997664 444
Q ss_pred cCceeee-------ecCCCCCCcccccC-CCCccccCChhHHHHHHHHHHHHHHHHHh
Q 039348 113 IGPYVCA-------EWNYGGFPMWLHNT-PGIQLRTDNDIFKNEMQVFTTKIVNMCKE 162 (651)
Q Consensus 113 ~GPyi~a-------Ew~~GG~P~WL~~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 162 (651)
+-|-... +|..-.+|.|+.+. .. ...+....+++.-++..++++.+.+
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~--~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLEK--YDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4443222 35566789888751 10 1122245666777777777777774
No 161
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=40.55 E-value=62 Score=38.58 Aligned_cols=71 Identities=14% Similarity=0.198 Sum_probs=51.7
Q ss_pred HHHHHHcCCCEEEEc-cc-----cC--ccCCcCceeecc---------CchhHHHHHHHHHHcCCEEEEec--------C
Q 039348 60 IQKAKDGGLDAIETY-IF-----WN--VHEPRRREYDFS---------GNLDFVKFFKLVQDAGLYAILRI--------G 114 (651)
Q Consensus 60 l~k~Ka~G~NtV~~y-v~-----Wn--~hEp~~G~fdF~---------g~~dL~~fl~la~~~GL~Vilr~--------G 114 (651)
++-++++|+++|-+- ++ |. ..--..|-||-+ ...|++++++.|+++||+||+.. -
T Consensus 80 wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~gh 159 (688)
T TIGR02455 80 WKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGA 159 (688)
T ss_pred HHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc
Confidence 346889999999862 33 43 222224556532 23699999999999999999762 1
Q ss_pred ceeeeecCCCCCCccc
Q 039348 115 PYVCAEWNYGGFPMWL 130 (651)
Q Consensus 115 Pyi~aEw~~GG~P~WL 130 (651)
||.-||.+.+-+|.|.
T Consensus 160 dF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 160 DFRLAELAHGDYPGLY 175 (688)
T ss_pred chHHHhhcCCCCCCce
Confidence 5888999999899988
No 162
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=40.54 E-value=22 Score=33.69 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhc
Q 039348 93 LDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEA 163 (651)
Q Consensus 93 ~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~ 163 (651)
.||..||+.|++.|+.|++=+-| +++.|-- .-|+ =++.-+.++++|-.+++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd---------ytG~--------~~~~r~~~y~kI~~~~~~~ 88 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYD---------YTGL--------SKEMRQEYYKKIKYQLKSQ 88 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHH---------HTT----------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHH---------HhCC--------CHHHHHHHHHHHHHHHHHC
Confidence 39999999999999999866655 6666531 1111 0244466888888888743
No 163
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=40.19 E-value=36 Score=35.15 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=37.9
Q ss_pred chHHHHHHHHHcCCCEEEEccccCccCC----cCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 55 MWPDLIQKAKDGGLDAIETYIFWNVHEP----RRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp----~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.+++.++.++++|..+|.+. ..+.. .+-.+... ...|.++.+.|+++|+.+.+.+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~~---~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLIS---AAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEEc---CCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 45677889999999999663 22221 11112211 2368999999999999999886
No 164
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=38.99 E-value=36 Score=37.34 Aligned_cols=62 Identities=11% Similarity=0.082 Sum_probs=43.6
Q ss_pred CCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 50 RSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 50 r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
|.+...=.-..+.++++|.++|.+.++|.-.++.+ -+-.-..+|.++.+.|+++||-+++-+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 54433322246789999999999999999553310 011123479999999999999998864
No 165
>PRK15492 triosephosphate isomerase; Provisional
Probab=38.95 E-value=62 Score=34.21 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=40.4
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
...++|++|++.|-+ -|..++-.|.= -+..+.+=++.|.++||.+|+++|
T Consensus 86 Sa~mLkd~G~~~vii-----GHSERR~~f~E-td~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 86 SPLMLKEIGTQLVMI-----GHSERRHKFGE-TDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CHHHHHHcCCCEEEE-----CccccccccCc-chHHHHHHHHHHHHCCCEEEEEcC
Confidence 456799999999999 68777776642 345667788899999999999987
No 166
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=38.19 E-value=1.6e+02 Score=31.42 Aligned_cols=115 Identities=19% Similarity=0.255 Sum_probs=66.8
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeecc---CchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCc
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFS---GNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPM 128 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~---g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~ 128 (651)
.-+.-+.-+.-+.++|+..|-+=.-|...+ ....+||+ ...||.++++-|++.|.-|+|+- + |..||-..
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~--~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----H--SETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----E--CCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE----e--CCcchhhH
Confidence 445567888999999999999977787622 23456775 34699999999999999998873 2 33322111
Q ss_pred cccc-------------CCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEE
Q 039348 129 WLHN-------------TPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPII 174 (651)
Q Consensus 129 WL~~-------------~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII 174 (651)
=|.+ +.++++=.=+ .--+.+-+|+.+|++.-+++.|+..=+|++.
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~-~d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~k 160 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMD-RDDQEMVNWYEDILEDAAEYKLMVNFHGATK 160 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--S-STSHHHHHHHHHHHHHHHHTT-EEEETTS--
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCC-CCCHHHHHHHHHHHHHHHHcCcEEEecCCcC
Confidence 1111 1111110000 0124567899999999999988766555543
No 167
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=38.05 E-value=43 Score=37.39 Aligned_cols=56 Identities=27% Similarity=0.380 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEEE-ccccC---ccCCcCcee-----eccCchhHHHHHHHHHHcCCEEEEec
Q 039348 58 DLIQKAKDGGLDAIET-YIFWN---VHEPRRREY-----DFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 58 ~~l~k~Ka~G~NtV~~-yv~Wn---~hEp~~G~f-----dF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
+.|.-+|.+|+++|-+ +++=+ .|.--.-.| .|....|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6788899999999964 33311 221111000 46777899999999999999999773
No 168
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=37.66 E-value=94 Score=36.46 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=45.3
Q ss_pred EEEEEeec--CCcccceeEEEeecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeeccCCccEEEEEEec
Q 039348 483 YMTSVDTR--NISLKNMTLRVSTNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKKGLNVISLLSVT 559 (651)
Q Consensus 483 Y~T~v~~~--~~~~~~~~Lrv~s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~g~n~LsiLv~n 559 (651)
|.++|.+= ++ +....|.++++.-.+.|||||+-|+..... + .+..++.+..+. |.|.|.|---+
T Consensus 80 ysr~frl~dl~~-~~~~~l~ie~vdtia~v~~n~~~v~~s~n~---------f--~~y~~~vt~ii~-~~n~i~~~f~s 145 (867)
T KOG2230|consen 80 YSRKFRLIDLDD-TVGAFLEIESVDTIATVYVNGQKVLHSRNQ---------F--LPYHVNVTDIIA-GENDITIKFKS 145 (867)
T ss_pred ceeeeEEEEccc-cccceEEEeecceeEEEEEccEEEeecccc---------c--eeEEEeEEEEec-CCcceEEEeeh
Confidence 56665432 22 256789999999999999999999987755 4 456667666554 77777765544
No 169
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=37.14 E-value=54 Score=34.36 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCEEEEcccc--CccCCcCceeeccCchhHHHHHHHHHHcCCEEEEe
Q 039348 57 PDLIQKAKDGGLDAIETYIFW--NVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~W--n~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr 112 (651)
++.+++||++|++.|...+-- ..++...+..+|+ +..+.++.++++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 678999999999998886441 0111112223444 6667899999999987543
No 170
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=36.84 E-value=4.4e+02 Score=26.87 Aligned_cols=45 Identities=22% Similarity=0.449 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEE
Q 039348 57 PDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI 110 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi 110 (651)
++.++.|+++|+|++.+- |=|| ||| |..-|.+.++.++++|+..+
T Consensus 63 ~~~~~~l~~~G~d~~~la---NNH~-----fD~-G~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 63 PENAAALKAAGFDVVSLA---NNHS-----LDY-GEEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHHhCCCEEEec---cCcc-----ccc-chHHHHHHHHHHHHCCCCEe
Confidence 457889999999999872 1233 555 34467888888888888765
No 171
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=36.78 E-value=16 Score=31.78 Aligned_cols=37 Identities=24% Similarity=0.555 Sum_probs=27.8
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHc
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDA 105 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~ 105 (651)
....|-.-+|.+-. .||.|..|||. +|++||++|-|-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 45668888887765 58999999999 999999999874
No 172
>PRK14565 triosephosphate isomerase; Provisional
Probab=36.59 E-value=62 Score=33.81 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
...++|++|++.|-+ -|..++--|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 77 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 77 SAKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 456799999999998 677776555422 22333334899999999999987
No 173
>PLN02561 triosephosphate isomerase
Probab=36.05 E-value=72 Score=33.63 Aligned_cols=50 Identities=20% Similarity=0.077 Sum_probs=40.6
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
...++|++|++.|-+ -|..++..|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 80 S~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL-----GHSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 456799999999999 677777666433 45677888899999999999987
No 174
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=35.91 E-value=66 Score=34.41 Aligned_cols=58 Identities=10% Similarity=0.201 Sum_probs=46.1
Q ss_pred CccchHHHHHHHHHcCCCEEEEccc----cCccC----------------CcCceeeccCchhHHHHHHHHHHcCCEEEE
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIF----WNVHE----------------PRRREYDFSGNLDFVKFFKLVQDAGLYAIL 111 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~----Wn~hE----------------p~~G~fdF~g~~dL~~fl~la~~~GL~Vil 111 (651)
+.+..++.|+.|-..++|++..++- |.+-- +..|.|.-+ ++.++++.|++.|+.||-
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEE
Confidence 6778899999999999999999877 74431 122344444 999999999999999996
Q ss_pred e
Q 039348 112 R 112 (651)
Q Consensus 112 r 112 (651)
.
T Consensus 91 E 91 (303)
T cd02742 91 E 91 (303)
T ss_pred e
Confidence 5
No 175
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=35.82 E-value=1.2e+02 Score=35.80 Aligned_cols=109 Identities=15% Similarity=0.179 Sum_probs=73.5
Q ss_pred EEEEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCce
Q 039348 37 QRKVIISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPY 116 (651)
Q Consensus 37 ~~~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPy 116 (651)
++-+.+++..|+.+.+.+.=.++|.+-.++|.+.+-|=.+ ||-+ .+.+|++.+++.++.+|..+-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~----------fd~~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPV----------YDEE---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEeccc----------CCHH---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4457888888877654443334566666899999998444 3434 78899999988888888877764
Q ss_pred eee--------ecCCCCCCcccccC-CCCccccCChhHHHHHHHHHHHHHHHHH
Q 039348 117 VCA--------EWNYGGFPMWLHNT-PGIQLRTDNDIFKNEMQVFTTKIVNMCK 161 (651)
Q Consensus 117 i~a--------Ew~~GG~P~WL~~~-p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 161 (651)
... +|..-=+|.|+.+. .. .. +...++++--++..++++.++
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 433 34444578888761 11 12 234677778888888888777
No 176
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=35.71 E-value=65 Score=29.42 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=26.2
Q ss_pred CcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeeccCCccEEEEE
Q 039348 505 GHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKKGLNVISLL 556 (651)
Q Consensus 505 ~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~g~n~LsiL 556 (651)
+-...|||||+++|+...+ .-|.++ +++|+++|+.-
T Consensus 40 ~~~~~v~vdg~~ig~l~~g------------~y~~~~----v~pG~h~i~~~ 75 (117)
T PF11008_consen 40 AVKPDVYVDGELIGELKNG------------GYFYVE----VPPGKHTISAK 75 (117)
T ss_pred cccceEEECCEEEEEeCCC------------eEEEEE----ECCCcEEEEEe
Confidence 4567899999999997755 124444 67888888863
No 177
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=35.64 E-value=1.7e+02 Score=31.86 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCc
Q 039348 58 DLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQ 137 (651)
Q Consensus 58 ~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~ 137 (651)
..+...++.|.+||-. +.+ -.-.||..++.+.+++-||.+|...|+|.-+.| |.|+...|
T Consensus 52 ~e~~~~~a~Gg~TIVD--------~T~----~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~-----p~~~~~~~--- 111 (316)
T COG1735 52 AELKRLMARGGQTIVD--------ATN----IGIGRDVLKMRRVAEATGLNIVAATGFYKAAFH-----PEYFALRP--- 111 (316)
T ss_pred HHHHHHHHcCCCeEee--------CCc----cccCcCHHHHHHHHHHhCCcEEEeccccccccc-----hhHHhhCC---
Confidence 4566677789998864 111 011378999999999999999999999998876 46776433
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCcchHHHHHHHHHHHHhcCCCcCeEEec
Q 039348 138 LRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKQYIKWCANMAVAQNISEPWIMCQ 217 (651)
Q Consensus 138 ~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~vP~~~~~ 217 (651)
.+.+...+++.++. .+ .|+=|..=|=-|-|.+.. .-.....-++.+++..++ .++|+.+..
T Consensus 112 -----------i~~~ae~~v~ei~~-Gi----~gT~ikAGiIk~~~~~~~-iTp~Eek~lrAaA~A~~~--Tg~Pi~tHt 172 (316)
T COG1735 112 -----------IEELAEFVVKEIEE-GI----AGTGIKAGIIKEAGGSPA-ITPLEEKSLRAAARAHKE--TGAPISTHT 172 (316)
T ss_pred -----------HHHHHHHHHHHHHh-cc----cCCccccceeeeccCccc-CCHHHHHHHHHHHHHhhh--cCCCeEEec
Confidence 34455555555551 21 233333333345454321 111223344444444443 478887754
No 178
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=35.10 E-value=74 Score=33.82 Aligned_cols=59 Identities=17% Similarity=0.185 Sum_probs=42.7
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCC--cCc--eeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEP--RRR--EYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp--~~G--~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.++..++.++.+++.|.+.|.+|.-+..-.+ .++ .++- ..+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~---e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSE---EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCH---HHHHHHHHHHHHcCCEEEEEe
Confidence 3666788999999999999999875422111 112 2333 378999999999999987663
No 179
>PLN02429 triosephosphate isomerase
Probab=34.77 E-value=65 Score=35.06 Aligned_cols=46 Identities=26% Similarity=0.269 Sum_probs=35.3
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHH----HHHcCCEEEEecC
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKL----VQDAGLYAILRIG 114 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~l----a~~~GL~Vilr~G 114 (651)
-..++|++|++.|-+ -|..++-.|. ..++++.. |.++||.+|+++|
T Consensus 139 Sa~mLkd~Gv~~Vii-----GHSERR~~f~-----Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 139 SVEQLKDLGCKWVIL-----GHSERRHVIG-----EKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred CHHHHHHcCCCEEEe-----CccccCCCCC-----cCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 345799999999988 6776666554 34555555 9999999999987
No 180
>PRK14567 triosephosphate isomerase; Provisional
Probab=34.66 E-value=80 Score=33.33 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=39.9
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
...++|++|++.|-+ -|..++--|.= -...+.+=++.|.++||.+|+++|
T Consensus 77 S~~mLkd~G~~yvii-----GHSERR~~f~E-td~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 77 SARMLEDIGCDYLLI-----GHSERRSLFAE-SDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCccCC-CHHHHHHHHHHHHHCCCEEEEEcC
Confidence 345799999999999 67777766653 345677788899999999999987
No 181
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=34.56 E-value=1.8e+02 Score=29.78 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=65.0
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeecc-CchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccc
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFS-GNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWL 130 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~-g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 130 (651)
.+.+++..++.++++|+.++.+|..... ....|..+ |..|=..-+.+|+++|+. + |-|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----P-----------GTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 5788999999999999999999988765 22233333 678899999999999982 1 233343
Q ss_pred ccCCCCccccCChhHHHHHHHHHHHHHHHHHhcc
Q 039348 131 HNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEAN 164 (651)
Q Consensus 131 ~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~ 164 (651)
.-+.+ ..+..+...+..|++.+.+.|+...
T Consensus 112 avD~d----~~~~~~~~~v~~Y~~a~~~~l~~~g 141 (212)
T cd06418 112 AVDFD----ALDDEVTEVILPYFRGWNDALHEAG 141 (212)
T ss_pred EeecC----CCcchhHHHHHHHHHHHHHHHHhcC
Confidence 32222 1223377888999999999888543
No 182
>PTZ00333 triosephosphate isomerase; Provisional
Probab=34.30 E-value=83 Score=33.18 Aligned_cols=50 Identities=28% Similarity=0.240 Sum_probs=41.5
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
-..++|++|++.|-+ -|..++-.|.= .+..+.+=++.|.++||.+|++.|
T Consensus 81 S~~mL~d~G~~~vii-----GHSERR~~f~E-td~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 81 SAEMLKDLGINWTIL-----GHSERRQYFGE-TNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCcCCC-CcHHHHHHHHHHHHCCCEEEEEcC
Confidence 346799999999999 78777777642 356888999999999999999987
No 183
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=34.30 E-value=55 Score=33.82 Aligned_cols=60 Identities=15% Similarity=0.022 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCcC-ceeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPRR-REYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~-G~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
+.+++.|+.++++|++.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4467889999999999998631100011111 01110 114688899999999999998863
No 184
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=34.06 E-value=1.2e+02 Score=31.86 Aligned_cols=89 Identities=25% Similarity=0.401 Sum_probs=56.7
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcC--CEEEEecCceee-------eecCCCCCCcc
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAG--LYAILRIGPYVC-------AEWNYGGFPMW 129 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~G--L~Vilr~GPyi~-------aEw~~GG~P~W 129 (651)
.|++=-++|.+.+-|=.+ ||.+ .+.+|++.|++.| +.|++.+-|-.. +++-.-++|.|
T Consensus 152 ~L~~Ki~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP~~ 218 (274)
T cd00537 152 RLKRKVDAGADFIITQLF----------FDND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIPDW 218 (274)
T ss_pred HHHHHHHCCCCEEeeccc----------ccHH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCCHH
Confidence 343444569999888333 3433 7889999999998 556666656433 35555678999
Q ss_pred cccCCCCc-cccCChhHHHHHHHHHHHHHHHHHh
Q 039348 130 LHNTPGIQ-LRTDNDIFKNEMQVFTTKIVNMCKE 162 (651)
Q Consensus 130 L~~~p~i~-~Rt~d~~y~~~~~~~~~~i~~~l~~ 162 (651)
+.+. +. ...+....++.-.++..++++.+.+
T Consensus 219 ~~~~--l~~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 219 LLER--LEKLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8761 10 1123344566677778888887774
No 185
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=33.35 E-value=88 Score=35.68 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=45.1
Q ss_pred eeCCCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 46 IHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 46 ~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
..|.+.|.+.-++.++++.++|++.|++...-|.. +++...++.|+++|+.|.+.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 34556677777889999999999999998876543 258889999999999886653
No 186
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=32.99 E-value=47 Score=37.10 Aligned_cols=89 Identities=10% Similarity=0.131 Sum_probs=65.2
Q ss_pred ccceeEEeeCCcEEECCEEEEEEEEEeeCCC-CCccchHHHHHHHHHc-CCCEEEEccccCccCCcCceeeccCchhHHH
Q 039348 20 CLAIKVEYDANALIIDGQRKVIISGSIHYPR-STPEMWPDLIQKAKDG-GLDAIETYIFWNVHEPRRREYDFSGNLDFVK 97 (651)
Q Consensus 20 ~~~~~v~~d~~~~~idG~~~~i~sG~~Hy~r-~~~~~W~~~l~k~Ka~-G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~ 97 (651)
..+..|-.-+-.|-+..-+-...+=|+.|+- .|.+.|+-+|.-+.++ -=||+.+-| =|=+.|--++|+-. .|.+
T Consensus 148 ~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivv-iNP~NPcGnVys~~---HL~k 223 (447)
T KOG0259|consen 148 NPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVV-INPNNPCGNVYSED---HLKK 223 (447)
T ss_pred CCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEE-eCCCCCCcccccHH---HHHH
Confidence 3344555555555444444444445665555 5788899999999887 778888754 47788888899877 8999
Q ss_pred HHHHHHHcCCEEEEe
Q 039348 98 FFKLVQDAGLYAILR 112 (651)
Q Consensus 98 fl~la~~~GL~Vilr 112 (651)
++++|+++|+.||..
T Consensus 224 iae~A~klgi~vIaD 238 (447)
T KOG0259|consen 224 IAETAKKLGIMVIAD 238 (447)
T ss_pred HHHHHHHhCCeEEeh
Confidence 999999999999865
No 187
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=32.81 E-value=1.6e+02 Score=23.71 Aligned_cols=45 Identities=31% Similarity=0.476 Sum_probs=33.8
Q ss_pred chHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEe
Q 039348 55 MWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr 112 (651)
..++.++.+|+.|++.|-+= -|. ++. ...++.+++++.||.||..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 46889999999999999862 222 233 4668889999999988743
No 188
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.69 E-value=2.6e+02 Score=28.86 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=57.0
Q ss_pred CCccchHHHHHHHHHcCCCEEEEc--ccc--CccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCC
Q 039348 51 STPEMWPDLIQKAKDGGLDAIETY--IFW--NVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGF 126 (651)
Q Consensus 51 ~~~~~W~~~l~k~Ka~G~NtV~~y--v~W--n~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~ 126 (651)
+.++.-+..-+.+++.|+.+...- .+. +...+.+..-+ .....+++.|++|++.|..+|.-+| .
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~i~~a~~lG~~~i~~~~-----------~ 121 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRA-QALEIMRKAIQLAQDLGIRVIQLAG-----------Y 121 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHH-HHHHHHHHHHHHHHHcCCCEEEECC-----------c
Confidence 355566677778889999987642 111 11111111000 0123588899999999998764221 1
Q ss_pred CcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEeccccccc
Q 039348 127 PMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYG 183 (651)
Q Consensus 127 P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg 183 (651)
+.|. ...++...+.+...++.|+++.++++ |-+.+||-.+
T Consensus 122 ~~~~--------~~~~~~~~~~~~~~l~~l~~~A~~~G---------V~i~iE~~~~ 161 (283)
T PRK13209 122 DVYY--------EQANNETRRRFIDGLKESVELASRAS---------VTLAFEIMDT 161 (283)
T ss_pred cccc--------cccHHHHHHHHHHHHHHHHHHHHHhC---------CEEEEeecCC
Confidence 2121 11224444555666777888777543 3556788543
No 189
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=32.56 E-value=3.7e+02 Score=24.06 Aligned_cols=75 Identities=24% Similarity=0.307 Sum_probs=44.3
Q ss_pred eeeEEEEEEEeecCCcccceeEEEeecC--cEEEEEECC---EEEEEEEcccccccccccCCCceeEEEeeeeccCCccE
Q 039348 478 SDYLWYMTSVDTRNISLKNMTLRVSTNG--HGLHAYVNG---KLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKKGLNV 552 (651)
Q Consensus 478 tgYlwY~T~v~~~~~~~~~~~Lrv~s~~--h~~~vfvNG---~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~g~n~ 552 (651)
-+|+=|.. |+++...--...+|+.+.. -.+.++||| +.+++..-.. -+. . ..--+...++.|+.|.|.
T Consensus 31 G~~~~~~~-Vd~~~~g~y~~~~~~a~~~~~~~~~l~id~~~g~~~~~~~~~~-tg~----w-~~~~~~~~~v~l~~G~h~ 103 (125)
T PF03422_consen 31 GDWIEYNN-VDVPEAGTYTLTIRYANGGGGGTIELRIDGPDGTLIGTVSLPP-TGG----W-DTWQTVSVSVKLPAGKHT 103 (125)
T ss_dssp TTEEEEEE-EEESSSEEEEEEEEEEESSSSEEEEEEETTTTSEEEEEEEEE--ESS----T-TEEEEEEEEEEEESEEEE
T ss_pred CCEEEEEE-EeeCCCceEEEEEEEECCCCCcEEEEEECCCCCcEEEEEEEcC-CCC----c-cccEEEEEEEeeCCCeeE
Confidence 35666663 5554221013456666653 389999999 9998876430 000 1 111345567778889998
Q ss_pred EEEEEec
Q 039348 553 ISLLSVT 559 (651)
Q Consensus 553 LsiLv~n 559 (651)
|.|-...
T Consensus 104 i~l~~~~ 110 (125)
T PF03422_consen 104 IYLVFNG 110 (125)
T ss_dssp EEEEESS
T ss_pred EEEEEEC
Confidence 8876654
No 190
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=32.24 E-value=90 Score=32.93 Aligned_cols=50 Identities=28% Similarity=0.285 Sum_probs=38.2
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
...++|++|++.|-+ -|..++-.|+=+ ...+.+=++.|.++||.+||+.|
T Consensus 80 S~~mL~d~G~~~vii-----GHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 80 SAEMLKDLGAKYVLI-----GHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred CHHHHHHcCCCEEEE-----Cccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 345699999999998 676665555432 33566888899999999999986
No 191
>PLN02784 alpha-amylase
Probab=31.99 E-value=96 Score=38.22 Aligned_cols=57 Identities=9% Similarity=0.113 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCEEEEccccCccCC---cCce-ee----ccCchhHHHHHHHHHHcCCEEEEec
Q 039348 57 PDLIQKAKDGGLDAIETYIFWNVHEP---RRRE-YD----FSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp---~~G~-fd----F~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.+.|.-++++|+++|-+.=+.....+ .+.. |+ |....+|..+|+.|+++||.||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45677789999999987533221111 1111 12 2334699999999999999999874
No 192
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=31.92 E-value=1.8e+02 Score=29.75 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=68.9
Q ss_pred cchHHHHHHHHHcCCCE-EEE--ccccCccCC---cCc--eeecc-----------C--chhHHHHHHHHHHcCCEEEEe
Q 039348 54 EMWPDLIQKAKDGGLDA-IET--YIFWNVHEP---RRR--EYDFS-----------G--NLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~Nt-V~~--yv~Wn~hEp---~~G--~fdF~-----------g--~~dL~~fl~la~~~GL~Vilr 112 (651)
+.-.+.++++|+.|+.+ |+| |+.|...+. .-. -+|+- | +..+.+.|+.+.++|..+.+|
T Consensus 54 ~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~iR 133 (213)
T PRK10076 54 EFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPR 133 (213)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEE
Confidence 44468899999999874 444 455522221 111 12332 2 234556778888999999998
Q ss_pred cCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEeccccccccc-----c-
Q 039348 113 IGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNI-----M- 186 (651)
Q Consensus 113 ~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~-----~- 186 (651)
. |. +|++ ++++.-++++.+|++.+. +. +|-+..- +-+|.. +
T Consensus 134 ~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpy-h~~g~~Ky~~lg~ 180 (213)
T PRK10076 134 L-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPF-HQYGEPKYRLLGK 180 (213)
T ss_pred E-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecC-CccchhHHHHcCC
Confidence 6 22 3553 345555555555554431 11 2211111 111110 0
Q ss_pred ----cccCcchHHHHHHHHHHHHhcCCCc
Q 039348 187 ----EKYGDAGKQYIKWCANMAVAQNISE 211 (651)
Q Consensus 187 ----~~~~~~~~~y~~~l~~~~~~~gi~v 211 (651)
........+.++++++.+++.|+.+
T Consensus 181 ~y~~~~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 181 TWSMKEVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred cCccCCCCCcCHHHHHHHHHHHHHcCCeE
Confidence 0112357889999999999999875
No 193
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=31.90 E-value=8e+02 Score=27.87 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCCEEEEccc----cCccCCcCceeeccCchhHHHHHHHHHHcCCEE--EEecCceeeeecCCCCCCccc
Q 039348 57 PDLIQKAKDGGLDAIETYIF----WNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYA--ILRIGPYVCAEWNYGGFPMWL 130 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~----Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~V--ilr~GPyi~aEw~~GG~P~WL 130 (651)
...++.+.+.|+|+++++.- |..-... ..++.+|.++|+++||.+ ++-=+||.
T Consensus 144 ~~a~~~a~~~g~~afqiF~~npr~w~~~~~~--------~~~~~~f~~~~~~~gi~~~~i~~HapYl------------- 202 (413)
T PTZ00372 144 DNSPINAYNIAGQAFALFLKNQRTWNSPPLS--------DETIDKFKENCKKYNYDPKFILPHGSYL------------- 202 (413)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCccCCCCCCC--------HHHHHHHHHHHHHcCCCcceEEeecCce-------------
Confidence 45788999999999999864 5443333 237999999999998852 33455663
Q ss_pred ccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecc
Q 039348 131 HNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQI 178 (651)
Q Consensus 131 ~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI 178 (651)
+.+-+.|+.-++...+++.+-+++.. .+ |-+.+-++.
T Consensus 203 -----INLASpd~e~rekSv~~~~~eL~rA~--~L----Ga~~VV~HP 239 (413)
T PTZ00372 203 -----INLANPDKEKREKSYDAFLDDLQRCE--QL----GIKLYNFHP 239 (413)
T ss_pred -----ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECC
Confidence 23445567776766666666555555 22 345555554
No 194
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.78 E-value=3.2e+02 Score=28.57 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEE--EEecCceeeeecCCCCCCcccccCC
Q 039348 57 PDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYA--ILRIGPYVCAEWNYGGFPMWLHNTP 134 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~V--ilr~GPyi~aEw~~GG~P~WL~~~p 134 (651)
.+.++.+++.|+++|++++- .|.--....-...+..+|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLK----SPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEec----CccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 56899999999999999653 12111111111236778888899998863 33334542
Q ss_pred CCccccCChhHHHHHHHHHHHHHHHHH
Q 039348 135 GIQLRTDNDIFKNEMQVFTTKIVNMCK 161 (651)
Q Consensus 135 ~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 161 (651)
+.+-+.|+.-+++..+.+.+.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12345577777777777777666655
No 195
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=31.50 E-value=5.7e+02 Score=25.93 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=70.2
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLH 131 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 131 (651)
...-+++.+++++++|+..|+..- .+.+..+ ..++.++.++++++||.+..-- |+. .. |+.
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--------~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~-~~~-------~~--~~~ 73 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--------GDLFPAD-YKELAELKELLADYGLEITSLA-PFS-------NN--LLS 73 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--------cccCCch-hhhHHHHHHHHHHcCcEEEeec-ccC-------CC--cCC
Confidence 345688999999999999999865 1112111 1138899999999999987431 111 00 222
Q ss_pred cCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccc--cccC--cchHHHHHHHHHHHHhc
Q 039348 132 NTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIM--EKYG--DAGKQYIKWCANMAVAQ 207 (651)
Q Consensus 132 ~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~--~~~~--~~~~~y~~~l~~~~~~~ 207 (651)
.+++.. ++..+.++++++..+ .+ |.++|.++.-.=.+... .... ..-.++++.|.+.+++.
T Consensus 74 --------~~~~~~-~~~~~~~~~~i~~a~--~l----g~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~ 138 (274)
T COG1082 74 --------PDEEER-EEALEELKRAIELAK--EL----GAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEEL 138 (274)
T ss_pred --------CchhhH-HHHHHHHHHHHHHHH--Hc----CCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 222333 333444444555554 22 34545444311111100 0000 12356777888888888
Q ss_pred CCCcCeE
Q 039348 208 NISEPWI 214 (651)
Q Consensus 208 gi~vP~~ 214 (651)
|+++-+-
T Consensus 139 ~i~l~~e 145 (274)
T COG1082 139 GIGLALE 145 (274)
T ss_pred CCceEEe
Confidence 8776543
No 196
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=31.48 E-value=62 Score=33.28 Aligned_cols=60 Identities=7% Similarity=-0.043 Sum_probs=39.0
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
+..++.++.++++|..+|.+...+..-...+.+..-.-...|.++.++|+++|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 346788899999999999874333211111112111112467888899999999999987
No 197
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.19 E-value=90 Score=24.36 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=38.8
Q ss_pred ccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEE
Q 039348 53 PEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYA 109 (651)
Q Consensus 53 ~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~V 109 (651)
|..-.+.+.-+.+.|+|.+.++. +.........+-|.-. +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 34456788889999999998876 3322234455555432 4889999999999765
No 198
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.12 E-value=1.9e+02 Score=31.29 Aligned_cols=60 Identities=10% Similarity=0.192 Sum_probs=45.9
Q ss_pred CCccchHHHHHHHHHcCCCEEEEcc----ccCccC---Cc---Cc----eeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 51 STPEMWPDLIQKAKDGGLDAIETYI----FWNVHE---PR---RR----EYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 51 ~~~~~W~~~l~k~Ka~G~NtV~~yv----~Wn~hE---p~---~G----~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.+.+..++.|+.|...++|+...++ -|.+-- |. .| .|. ..|+.++++.|++.|+.||-.+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEee
Confidence 4688889999999999999999987 374321 11 22 233 3499999999999999999653
No 199
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=30.47 E-value=42 Score=36.51 Aligned_cols=89 Identities=21% Similarity=0.471 Sum_probs=47.6
Q ss_pred EEEEEEeeCCC------CCccchHHHHHHHHHc-CCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEe
Q 039348 40 VIISGSIHYPR------STPEMWPDLIQKAKDG-GLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 40 ~i~sG~~Hy~r------~~~~~W~~~l~k~Ka~-G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr 112 (651)
.+.||. |.+. .+.+-+++-.++--.. |+|..+-| |..-++.. ....++|++|+++|-|.|-
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~iW- 171 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYFIW- 171 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EEEE-
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceEEe-
Confidence 456777 8333 3444456666665554 88888874 66555543 3688999999999999831
Q ss_pred cCceeeeecCCC-CCCcccccCCCCccccCChhHHHHHHHHH
Q 039348 113 IGPYVCAEWNYG-GFPMWLHNTPGIQLRTDNDIFKNEMQVFT 153 (651)
Q Consensus 113 ~GPyi~aEw~~G-G~P~WL~~~p~i~~Rt~d~~y~~~~~~~~ 153 (651)
++-.++ .+-.|+-. ..++.|++++++|-
T Consensus 172 ------s~~~N~~am~k~~~~-------~~~~~~~~A~~~y~ 200 (324)
T PF08306_consen 172 ------SDQNNPIAMEKWFGE-------QRNPEFKDACEKYS 200 (324)
T ss_dssp ------E---GGGHHHHHCCC-------CCSHHHHHHHHHHG
T ss_pred ------ecCCChHHHHHhhhh-------ccCHHHHHHHHHhh
Confidence 121111 12233321 25688888877664
No 200
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=30.09 E-value=1.2e+02 Score=32.12 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=40.6
Q ss_pred CCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEe
Q 039348 51 STPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 51 ~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr 112 (651)
.|.+.=++++++..+.|+..|+++++.+- + ..+...++.|+++|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEEE
Confidence 34555688999999999999999887654 2 37889999999999988753
No 201
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=30.03 E-value=99 Score=33.20 Aligned_cols=88 Identities=19% Similarity=0.317 Sum_probs=57.1
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCE--EEEecCceee-------eecCCCCCCcc
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLY--AILRIGPYVC-------AEWNYGGFPMW 129 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~--Vilr~GPyi~-------aEw~~GG~P~W 129 (651)
.|++-.++|.+.+-|=. -||.+ .+.+|++.|++.|+. |+..+-|-.. ++...-++|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~----------~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQF----------FFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeeccc----------ccchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 34444568888777722 25555 789999999999954 5555555321 56667789999
Q ss_pred cccC-CCCccccCC-hhHHHHHHHHHHHHHHHHHh
Q 039348 130 LHNT-PGIQLRTDN-DIFKNEMQVFTTKIVNMCKE 162 (651)
Q Consensus 130 L~~~-p~i~~Rt~d-~~y~~~~~~~~~~i~~~l~~ 162 (651)
+.+. .. . .++ +..+++--++..++++.+.+
T Consensus 235 l~~~l~~--~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 235 MAKMFDG--L-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9762 11 1 233 34666677788888887774
No 202
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=29.82 E-value=1.6e+02 Score=31.87 Aligned_cols=141 Identities=16% Similarity=0.236 Sum_probs=78.3
Q ss_pred CccchHHHHHHHHHcCCCEEEEccc--cCcc---CC------------------------cCceeeccCchhHHHHHHHH
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIF--WNVH---EP------------------------RRREYDFSGNLDFVKFFKLV 102 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~--Wn~h---Ep------------------------~~G~fdF~g~~dL~~fl~la 102 (651)
+.+..++.|+.|-..++|++..++- |.+- .| ..|.|. ..++.++++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 6788899999999999999997654 3221 11 122333 24999999999
Q ss_pred HHcCCEEEEecCceeeeecCCCC-CCcccccCCCCcccc---------CChhHHHHHHHHHHHHHHHHHhccccccCCCc
Q 039348 103 QDAGLYAILRIGPYVCAEWNYGG-FPMWLHNTPGIQLRT---------DNDIFKNEMQVFTTKIVNMCKEANLFASQGGP 172 (651)
Q Consensus 103 ~~~GL~Vilr~GPyi~aEw~~GG-~P~WL~~~p~i~~Rt---------~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGp 172 (651)
+++|+.||-.+ +.-| .=+|+...|++..+. -| +-.+.+-++++.|++.+. +++- ..++
T Consensus 92 ~~rgI~vIPEI--------D~PGH~~a~~~~~pel~~~~~~~~~~~~~l~-~~~~~t~~f~~~l~~E~~--~~f~-~~~~ 159 (326)
T cd06564 92 KDRGVNIIPEI--------DSPGHSLAFTKAMPELGLKNPFSKYDKDTLD-ISNPEAVKFVKALFDEYL--DGFN-PKSD 159 (326)
T ss_pred HHcCCeEeccC--------CCcHHHHHHHHhhHHhcCCCcccCCCccccc-CCCHHHHHHHHHHHHHHH--HhcC-CCCC
Confidence 99999999553 1111 223444444332221 01 112445555566655555 3331 1133
Q ss_pred EEEecc-cccccccccccCcchHHHHHHHHHHHHhcCCC
Q 039348 173 IILAQI-ENEYGNIMEKYGDAGKQYIKWCANMAVAQNIS 210 (651)
Q Consensus 173 II~~QI-ENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~ 210 (651)
.| +| --|+-... .....-..|++.+.+.+++.|..
T Consensus 160 ~~--HiGgDE~~~~~-~~~~~~~~f~~~~~~~v~~~gk~ 195 (326)
T cd06564 160 TV--HIGADEYAGDA-GYAEAFRAYVNDLAKYVKDKGKT 195 (326)
T ss_pred EE--EeccccccccC-ccHHHHHHHHHHHHHHHHHcCCe
Confidence 33 22 01221100 00112357888888899988875
No 203
>PLN03059 beta-galactosidase; Provisional
Probab=29.39 E-value=96 Score=38.06 Aligned_cols=40 Identities=28% Similarity=0.582 Sum_probs=31.2
Q ss_pred eEEEEEEEeecCCcccceeEEEeecCcEEEEEECCEEEEEEE
Q 039348 480 YLWYMTSVDTRNISLKNMTLRVSTNGHGLHAYVNGKLIGSQF 521 (651)
Q Consensus 480 YlwY~T~v~~~~~~~~~~~Lrv~s~~h~~~vfvNG~~vgt~~ 521 (651)
-.||+++|+.+... ....|.+.+.+- -+|||||+-+|--.
T Consensus 620 ~twYK~~Fd~p~g~-Dpv~LDm~gmGK-G~aWVNG~nIGRYW 659 (840)
T PLN03059 620 LTWYKTTFDAPGGN-DPLALDMSSMGK-GQIWINGQSIGRHW 659 (840)
T ss_pred ceEEEEEEeCCCCC-CCEEEecccCCC-eeEEECCccccccc
Confidence 68999999997220 236888888876 67999999998765
No 204
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.23 E-value=1.7e+02 Score=28.17 Aligned_cols=47 Identities=19% Similarity=0.291 Sum_probs=34.3
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCch--hHHHHHHHHHHcCCEEEE
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNL--DFVKFFKLVQDAGLYAIL 111 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~--dL~~fl~la~~~GL~Vil 111 (651)
.++.+.+.+-.|++|-.+|. +|.-.|.|.+ +|-+.+. |+...+.|+.
T Consensus 39 t~qeLeal~~~T~ete~Pw~-----~gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 39 TLQELEALPDETIETETPWT-----QGNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred cHHHHhcCCcceEEEecCcc-----cCceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 46778889999999999995 4666788864 5555565 5666666663
No 205
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=29.06 E-value=2.6e+02 Score=25.51 Aligned_cols=65 Identities=14% Similarity=0.244 Sum_probs=38.6
Q ss_pred EEEEEEEeecCCcccceeEEEeecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeeccCC-ccEEEEEEe
Q 039348 481 LWYMTSVDTRNISLKNMTLRVSTNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKKG-LNVISLLSV 558 (651)
Q Consensus 481 lwY~T~v~~~~~~~~~~~Lrv~s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~g-~n~LsiLv~ 558 (651)
+-++..|..+.. ..-.+.+ +..+.+.+||||+.+....+.+ . ...+....+.|..| .+.|.|.-.
T Consensus 46 ~~~~g~i~~~~~--G~y~f~~-~~~~~~~l~Idg~~vid~~~~~---------~-~~~~~~~~v~l~~g~~~~i~v~y~ 111 (136)
T smart00758 46 VRWTGYLKPPED--GEYTFSI-TSDDGARLWIDGKLVIDNWGKH---------E-ARPSTSSTLYLLAGGTYPIRIEYF 111 (136)
T ss_pred EEEEEEEECCCC--ccEEEEE-EcCCcEEEEECCcEEEcCCccC---------C-CccccceeEEEeCCcEEEEEEEEE
Confidence 566777777622 3446666 4467799999999998765431 0 00112233456666 467776553
No 206
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=28.70 E-value=6.3e+02 Score=25.58 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEccccCccCCcCceeecc-CchhHHHHHHHHHHcCCEEEEec------CceeeeecCC------
Q 039348 57 PDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFS-GNLDFVKFFKLVQDAGLYAILRI------GPYVCAEWNY------ 123 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~-g~~dL~~fl~la~~~GL~Vilr~------GPyi~aEw~~------ 123 (651)
++.++.|+++|++++.+ -+.-.|. |..-|.+.++..+++|+..+--- .||.-=|.+.
T Consensus 67 ~~~~~~L~~~G~d~~tl----------aNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~i 136 (239)
T cd07381 67 PEVADALKAAGFDVVSL----------ANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFL 136 (239)
T ss_pred HHHHHHHHHhCCCEEEc----------ccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEE
Q ss_pred ----CCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCcchHHHHHH
Q 039348 124 ----GGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKQYIKW 199 (651)
Q Consensus 124 ----GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~ 199 (651)
...+.|............++. +.+++.++++-+. . ++ =|++.+...||.. ....+.+.
T Consensus 137 g~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~lr~~-~--D~------vIv~~H~G~e~~~-------~p~~~~~~ 198 (239)
T cd07381 137 AYTYGTNGIPLAAGARPGGVNPLDL--ERIAADIAEAKKK-A--DI------VIVSLHWGVEYSY-------YPTPEQRE 198 (239)
T ss_pred EEECCCCCCcCcccCCccccCccCH--HHHHHHHHHHhhc-C--CE------EEEEecCcccCCC-------CCCHHHHH
Q ss_pred HHHHHHhcCCCc
Q 039348 200 CANMAVAQNISE 211 (651)
Q Consensus 200 l~~~~~~~gi~v 211 (651)
+++.+.+.|+++
T Consensus 199 la~~l~~~G~D~ 210 (239)
T cd07381 199 LARALIDAGADL 210 (239)
T ss_pred HHHHHHHCCCCE
No 207
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=28.50 E-value=4e+02 Score=29.93 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=46.9
Q ss_pred EEEEEEEeeCCCCCccch----HHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEec-
Q 039348 39 KVIISGSIHYPRSTPEMW----PDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI- 113 (651)
Q Consensus 39 ~~i~sG~~Hy~r~~~~~W----~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~- 113 (651)
.++++|.+.-...++... .+.++++++.++. +|+.+.-|... . .+....++.++.|++|+-.+
T Consensus 42 ~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I~GNHD~~-------~--~l~~~~~~l~~~gi~vl~~~~ 109 (407)
T PRK10966 42 AIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVLAGNHDSV-------A--TLNESRDLLAFLNTTVIASAS 109 (407)
T ss_pred EEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEEcCCCCCh-------h--hhhhHHHHHHHCCcEEEeccc
Confidence 577888886443444332 3456677777754 45555555543 2 24455677789999988543
Q ss_pred -----CceeeeecCCCCCCcccccCC
Q 039348 114 -----GPYVCAEWNYGGFPMWLHNTP 134 (651)
Q Consensus 114 -----GPyi~aEw~~GG~P~WL~~~p 134 (651)
.|... +-..|...+|+.-.|
T Consensus 110 ~~~~~~~v~l-~~~~g~~~~~i~~lP 134 (407)
T PRK10966 110 DDLGHQVIIL-PRRDGTPGAVLCAIP 134 (407)
T ss_pred ccCCcceEEE-ecCCCCeeeEEEECC
Confidence 22221 223444556665544
No 208
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=28.05 E-value=83 Score=32.72 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=36.6
Q ss_pred chHHHHHHHHHcCCCEEEEccccC-ccCCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 55 MWPDLIQKAKDGGLDAIETYIFWN-VHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~yv~Wn-~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
..++.++.++++|.++|.+.-... ..+..+-.++. -...|.++.+.|+++|+.+.|.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRR-FREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHH-HHHHHHHHHHHHHHcCCEEEEee
Confidence 467788999999999997632100 00000001110 11467788999999999999985
No 209
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=28.04 E-value=1.3e+02 Score=28.46 Aligned_cols=92 Identities=11% Similarity=0.146 Sum_probs=46.7
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeecc-CchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccc
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFS-GNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWL 130 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~-g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 130 (651)
.+.+.+..++.++++|+..+.+|.....+. ......++ |..|=..-+..|++.|+. . |-|-++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 467889999999999999999998772221 11111221 567888999999999983 1 334444
Q ss_pred ccCCCCccccCChhHHHHHHHHHHHHHHHHHhc
Q 039348 131 HNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEA 163 (651)
Q Consensus 131 ~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~ 163 (651)
.- ..-..+..+...+..|++.+.+.|+.+
T Consensus 100 av----D~d~~~~~~~~~i~~Y~~g~~~~l~~~ 128 (136)
T PF08924_consen 100 AV----DYDATDAECDSAILPYFRGWNSALGAS 128 (136)
T ss_dssp E------TS-B-HH-------HHHHHHHHHGGG
T ss_pred Ee----ecCCCchhhhhHHHHHHHHHHHHHhhC
Confidence 32 122356677788888888888888753
No 210
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=27.91 E-value=85 Score=35.41 Aligned_cols=67 Identities=24% Similarity=0.313 Sum_probs=46.8
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEE-EEecCceeeeecCCCCCCc
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYA-ILRIGPYVCAEWNYGGFPM 128 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~V-ilr~GPyi~aEw~~GG~P~ 128 (651)
..+.=+..|..+|+.|+|+|-++++=.---+.+-.|.= -..|-+..++++.+.|..+ +|.+| ||||.
T Consensus 191 ~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~g 258 (448)
T KOG0622|consen 191 SLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG---------GGFPG 258 (448)
T ss_pred CHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC---------CCCCC
Confidence 44456788999999999999998764433333333321 1346777888899999985 68874 78874
No 211
>PLN02540 methylenetetrahydrofolate reductase
Probab=27.90 E-value=1.4e+02 Score=35.08 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=60.1
Q ss_pred HHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcC--CEEEEecCceee-------eecCCCCCCccccc
Q 039348 62 KAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAG--LYAILRIGPYVC-------AEWNYGGFPMWLHN 132 (651)
Q Consensus 62 k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~G--L~Vilr~GPyi~-------aEw~~GG~P~WL~~ 132 (651)
+-.++|.+.+-|=. -||.+ .+.+|++.|+++| +.+|..+-|-.. +++..--+|.|+.+
T Consensus 164 ~KvdAGAdFiITQl----------fFD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~i~~ 230 (565)
T PLN02540 164 EKVDAGADLIITQL----------FYDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITA 230 (565)
T ss_pred HHHHcCCCEEeecc----------ccCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHHHHH
Confidence 33367999998833 35665 7889999999999 566777666543 34555567999876
Q ss_pred CCCCccccCChhHHHHHHHHHHHHHHHHHh
Q 039348 133 TPGIQLRTDNDIFKNEMQVFTTKIVNMCKE 162 (651)
Q Consensus 133 ~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 162 (651)
.=+ ....+++..++.--++..++++.|.+
T Consensus 231 rLe-~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 231 ALE-PIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred HHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 200 12455566777788888888888874
No 212
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=27.83 E-value=5.4e+02 Score=27.75 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=78.0
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLH 131 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 131 (651)
.-+.-+.+|+.+|.-+. .|++|- +.-+-|..++.+|.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 34567889999999887 999973 123368888999999999999875 222
Q ss_pred cCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCcchHHHHHHHHHHHHhcCCCc
Q 039348 132 NTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKQYIKWCANMAVAQNISE 211 (651)
Q Consensus 132 ~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~v 211 (651)
. ++ . ..+++ .++.++. +. ..--.|-.+-|.||-=.-...-...--+|+...|..++++|.++
T Consensus 111 d--d~-------~--~~~~~---til~ay~--~~--~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 D--DI-------H--DAVEK---TILSAYL--PY--NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred c--ch-------h--hhHHH---HHHHHHh--cc--CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 21 1 12221 3333333 21 12236888999999532111111123589999999999999999
Q ss_pred CeEEecC
Q 039348 212 PWIMCQQ 218 (651)
Q Consensus 212 P~~~~~~ 218 (651)
|..+.++
T Consensus 173 pV~T~ds 179 (305)
T COG5309 173 PVTTVDS 179 (305)
T ss_pred ceeeccc
Confidence 9888664
No 213
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=27.73 E-value=45 Score=34.84 Aligned_cols=51 Identities=24% Similarity=0.227 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 58 DLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 58 ~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
--..++|++|++.|-+ -|..++--|. +....+.+=++.|.++||.+|++.|
T Consensus 75 vS~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 75 VSAEMLKDLGCKYVII-----GHSERRQYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HBHHHHHHTTESEEEE-----SCHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred hHHHHHHHhhCCEEEe-----ccccccCccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 3456899999999998 5665554444 3456899999999999999999987
No 214
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=27.72 E-value=66 Score=35.12 Aligned_cols=53 Identities=26% Similarity=0.319 Sum_probs=46.1
Q ss_pred chHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCE--EE-Eec
Q 039348 55 MWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLY--AI-LRI 113 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~--Vi-lr~ 113 (651)
.|++.+.+++..|+ +|+..-+-...|..|+.|. |+.+.+++|...||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 5788888889999999994 899999999999996 34 665
No 215
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=27.72 E-value=43 Score=27.74 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=12.3
Q ss_pred EEECCEEEEEEEcc
Q 039348 510 AYVNGKLIGSQFSR 523 (651)
Q Consensus 510 vfvNG~~vgt~~~~ 523 (651)
|||||.++|.+...
T Consensus 1 VFlNG~~iG~~~~p 14 (63)
T PF04566_consen 1 VFLNGVWIGIHSDP 14 (63)
T ss_dssp EEETTEEEEEESSH
T ss_pred CEECCEEEEEEcCH
Confidence 79999999999754
No 216
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.54 E-value=76 Score=32.41 Aligned_cols=59 Identities=10% Similarity=-0.068 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccC-CcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHE-PRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hE-p~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
+.+++.++.++++|..+|.+...+.--+ +.+-.++ .-...|.++.+.|++.|+.+.+-|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARA-TLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHH-HHHHHHHHHHHHHHhcCCEEEEEE
Confidence 5677888999999999998643221101 0110110 112468888999999999999986
No 217
>PRK08227 autoinducer 2 aldolase; Validated
Probab=27.45 E-value=1.4e+02 Score=31.79 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEE
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAIL 111 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vil 111 (651)
.++.+-++|.+.|.++++|.-. +.-+-..+|.+..+.|++.||-+++
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~------~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSE------YEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCH------HHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 4667889999999999999821 1122334899999999999999886
No 218
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.40 E-value=21 Score=35.73 Aligned_cols=66 Identities=24% Similarity=0.401 Sum_probs=44.5
Q ss_pred EEEEEEEeeCCCC---CccchHHHHHHHHHcCCCEEEEccccCccCCcCc--eeeccCchhHHHHHHHHHHcCCEEEEe
Q 039348 39 KVIISGSIHYPRS---TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRR--EYDFSGNLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 39 ~~i~sG~~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G--~fdF~g~~dL~~fl~la~~~GL~Vilr 112 (651)
..+-+|--.|.|+ .|-.-+ +-+.++|++.+-. -.--..| -|||-...+|..|+++|++|||.+-|.
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMv-----DTaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMV-----DTAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred eEEeccccchhhccCcCccccH---HHHHhcCCCEEEE-----ecccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 3445666667774 333333 3467788886543 1122344 589988889999999999999998765
No 219
>PRK09267 flavodoxin FldA; Validated
Probab=27.32 E-value=3.2e+02 Score=26.13 Aligned_cols=74 Identities=9% Similarity=0.143 Sum_probs=48.8
Q ss_pred ECCEEEEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEE
Q 039348 34 IDGQRKVIISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI 110 (651)
Q Consensus 34 idG~~~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi 110 (651)
+..-..++++...|....++..|.+-+.+++...++-..+.+|= ......-.-.| ..-+..+-+.+++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 34456688998899877778899999998888777766676663 22111000112 2246677788889997654
No 220
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=27.04 E-value=3.3e+02 Score=29.17 Aligned_cols=86 Identities=20% Similarity=0.159 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcE
Q 039348 94 DFVKFFKLVQDAGLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPI 173 (651)
Q Consensus 94 dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpI 173 (651)
.+.+.|+.||+.|++|+|-+|- |. |. . . ..++ +..+++.+.|.+.++++.+
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG-----~~-~~--------~--~--~~~~---~~~~~fa~sl~~~~~~~g~-------- 111 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGG-----AN-GH--------V--D--LNHT---AQEDNFVDSIVAIIKEYGF-------- 111 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeC-----CC-Cc--------c--c--cCCH---HHHHHHHHHHHHHHHHhCC--------
Confidence 5788899999999999999862 11 10 0 0 1122 3456788888888887654
Q ss_pred EEecccccccccccccCcchHHHHHHHHHHHHhcC
Q 039348 174 ILAQIENEYGNIMEKYGDAGKQYIKWCANMAVAQN 208 (651)
Q Consensus 174 I~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 208 (651)
=++.|+=|+.............|.+.|+++-...+
T Consensus 112 DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~ 146 (312)
T cd02871 112 DGLDIDLESGSNPLNATPVITNLISALKQLKDHYG 146 (312)
T ss_pred CeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcC
Confidence 27788888864210000122455566655544443
No 221
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=26.76 E-value=61 Score=38.89 Aligned_cols=57 Identities=18% Similarity=0.346 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCEEEEc-c--------ccCccCCc----Cceeecc----CchhHHHHHHHHHHcCCEEEEec
Q 039348 57 PDLIQKAKDGGLDAIETY-I--------FWNVHEPR----RREYDFS----GNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~y-v--------~Wn~hEp~----~G~fdF~----g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
+++|..+|.+|+|+|+.- | .|..+--. -+.|--. -.+++.+++|.|++.||-|+|..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 456999999999999952 2 24332100 0111000 02489999999999999999985
No 222
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=26.53 E-value=90 Score=32.59 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=31.8
Q ss_pred EECCEEEEEEEEEeeCCCC-CccchHHHHHHHHHcCCCEEEE
Q 039348 33 IIDGQRKVIISGSIHYPRS-TPEMWPDLIQKAKDGGLDAIET 73 (651)
Q Consensus 33 ~idG~~~~i~sG~~Hy~r~-~~~~W~~~l~k~Ka~G~NtV~~ 73 (651)
.+.|+++..+.|.+|+... ...+-+--++.||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 4689999999999997654 3343467788999999987643
No 223
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=26.44 E-value=2.3e+02 Score=24.03 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=30.2
Q ss_pred ceeEEEeecCcEEEEEECCEEEEEEEcccccccccccCCCceeEEEeeeeccCCccE-EEEEEec
Q 039348 496 NMTLRVSTNGHGLHAYVNGKLIGSQFSRQAKGQQMVTGDDYSFGFDKAVSLKKGLNV-ISLLSVT 559 (651)
Q Consensus 496 ~~~Lrv~s~~h~~~vfvNG~~vgt~~~~~~~~~~~~~~~~~~f~~~~~~~l~~g~n~-LsiLv~n 559 (651)
...|........+.|.|||..+.... . ...+.|..|.|. |.|-|.+
T Consensus 26 ~v~v~a~~~~~~a~v~vng~~~~~~~-~-----------------~~~i~L~~G~n~~i~i~Vta 72 (88)
T PF12733_consen 26 SVTVTATPEDSGATVTVNGVPVNSGG-Y-----------------SATIPLNEGENTVITITVTA 72 (88)
T ss_pred EEEEEEEECCCCEEEEEcCEEccCCC-c-----------------ceeeEccCCCceEEEEEEEc
Confidence 44566666677899999998875431 1 112336678887 8888743
No 224
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=26.32 E-value=1.1e+02 Score=32.22 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 57 PDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.++++.+.+.|+..|++.+..+ +++ .+.+.++.|+++|+.|.+-+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
Confidence 5678889999999999987554 344 78899999999999887654
No 225
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=25.73 E-value=1.2e+02 Score=36.96 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=44.1
Q ss_pred hHHHHHHHHHcCCC--EEEEccccCccCCcCceeeccC----chhHHHHHHHHHHcCCEEEEecCceeeeecC
Q 039348 56 WPDLIQKAKDGGLD--AIETYIFWNVHEPRRREYDFSG----NLDFVKFFKLVQDAGLYAILRIGPYVCAEWN 122 (651)
Q Consensus 56 W~~~l~k~Ka~G~N--tV~~yv~Wn~hEp~~G~fdF~g----~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~ 122 (651)
-+++.+.++++|+. ++-+=+.|. ++.=||+- -.++..|++..++.|+++++-+=|+|..--.
T Consensus 313 ~~dvv~~~~~agiPld~~~~DiDyM-----d~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~ 380 (805)
T KOG1065|consen 313 VRDVVENYRAAGIPLDVIVIDIDYM-----DGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSS 380 (805)
T ss_pred HHHHHHHHHHcCCCcceeeeehhhh-----hcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCcc
Confidence 37899999999998 555545553 22223331 1368999999999999999888888864433
No 226
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=25.58 E-value=74 Score=35.10 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=38.6
Q ss_pred HHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 60 IQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 60 l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
++.+-++|.+.|.+.|+|.-. +..+-..+|.+..+.|++.||-++++.
T Consensus 152 VedAlrLGAdAV~~tvy~Gs~------~E~~ml~~l~~i~~ea~~~GlPlv~~~ 199 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFGSE------ESRRQIEEISEAFEEAHELGLATVLWS 199 (348)
T ss_pred HHHHHHCCCCEEEEEEecCCH------HHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 667889999999999999821 223334589999999999999999864
No 227
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=25.04 E-value=46 Score=33.59 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=51.1
Q ss_pred CCEEE-EEEEEEeeCC-CCCccchHHHHHHHHHcCCCEEEEccccCccC--------CcCc----eeeccCchhHHHHHH
Q 039348 35 DGQRK-VIISGSIHYP-RSTPEMWPDLIQKAKDGGLDAIETYIFWNVHE--------PRRR----EYDFSGNLDFVKFFK 100 (651)
Q Consensus 35 dG~~~-~i~sG~~Hy~-r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hE--------p~~G----~fdF~g~~dL~~fl~ 100 (651)
.++++ .+.-|.-+.. ++|.+.|.+.++++++.| ..+.++|.-.| -.++ ..++.|..+|..++.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHH
Confidence 34444 4444444444 479999999999999998 45567776665 1222 578888889999999
Q ss_pred HHHHcCCEEEEecCc
Q 039348 101 LVQDAGLYAILRIGP 115 (651)
Q Consensus 101 la~~~GL~Vilr~GP 115 (651)
+.+...+.|-...||
T Consensus 180 li~~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 180 LISRADLVIGNDTGP 194 (247)
T ss_dssp HHHTSSEEEEESSHH
T ss_pred HHhcCCEEEecCChH
Confidence 999999988887776
No 228
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=25.02 E-value=1.1e+02 Score=36.09 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=44.2
Q ss_pred eeCCCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEE
Q 039348 46 IHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAIL 111 (651)
Q Consensus 46 ~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vil 111 (651)
+-|.|.|.+.-+..++++++.|+++|++....|.. +++...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 44666777777889999999999999998766653 3788999999999998643
No 229
>COG2360 Aat Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.65 E-value=1e+02 Score=31.72 Aligned_cols=105 Identities=19% Similarity=0.309 Sum_probs=62.1
Q ss_pred ceeeccCchhHHHHHHHHHHcCCEEEEecCceeeeecCCC-----------CCCccccc--CCCC---cccc---CChhH
Q 039348 85 REYDFSGNLDFVKFFKLVQDAGLYAILRIGPYVCAEWNYG-----------GFPMWLHN--TPGI---QLRT---DNDIF 145 (651)
Q Consensus 85 G~fdF~g~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----------G~P~WL~~--~p~i---~~Rt---~d~~y 145 (651)
+.|+..=+.++++.|+.|+..-=. |.|.||+.|-... .+=.|.-+ .-|+ .+.. -..-|
T Consensus 75 ~~~~v~~n~aF~~Vi~~CA~~~~~---r~~TWI~~~~~~aY~~Lh~~G~AHSvE~W~gdeLvGGlYGvalG~~F~GESMF 151 (221)
T COG2360 75 SPYRVRVNYAFAAVIEGCAATRPP---RDGTWINDEIREAYHKLHEMGHAHSVEVWQGDELVGGLYGVALGRAFFGESMF 151 (221)
T ss_pred CCeEEEechhHHHHHHHHhccCCC---CCCcccCHHHHHHHHHHHHhccceeEEEeeCCeeehhhhhhhhcceeechhhh
Confidence 445555556788888888875333 7777776654221 11223222 1111 0100 00001
Q ss_pred ---HHHHHHHHHHHHHHHHhccccccCCCcEEEecccccc----cccccccCcchHHHHHHHHH
Q 039348 146 ---KNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEY----GNIMEKYGDAGKQYIKWCAN 202 (651)
Q Consensus 146 ---~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEy----g~~~~~~~~~~~~y~~~l~~ 202 (651)
.++.+-.+-++++++++ .|+.+|=.|++||- |.+ .-..++|.+.|++
T Consensus 152 sr~~nASKialv~lv~~L~~------~g~~LiD~Q~~n~HL~~~GA~----~ipr~~y~~~L~~ 205 (221)
T COG2360 152 SRATNASKIALVHLVEHLRR------HGFVLIDCQVLNEHLASLGAY----EIPRKEYLNYLRR 205 (221)
T ss_pred hcCCCchHHHHHHHHHHHHh------cCceEEeeecCCHHHHhcCCe----ecCHHHHHHHHHH
Confidence 14566678889999984 57789999999994 542 3478999999988
No 230
>PRK06703 flavodoxin; Provisional
Probab=24.59 E-value=3e+02 Score=25.81 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=59.1
Q ss_pred ECCEEEEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 34 IDGQRKVIISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 34 idG~~~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
+..-..++++...+-.-.+|..+.+-+..+++.-++.....+|-...-. |.. .....+.+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~~-~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YPL-FCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hHH-HHHHHHHHHHHHHHCCCEEcccC
Confidence 3444556665544433335666777788887666665555555221000 110 12356667788899999887663
Q ss_pred CceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHH
Q 039348 114 GPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCK 161 (651)
Q Consensus 114 GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~ 161 (651)
..+ + .-.++..-++.++.|.++|++.++
T Consensus 121 --~~~-~-----------------~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 --LKI-E-----------------LAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred --eEE-e-----------------cCCCchhHHHHHHHHHHHHHHHHH
Confidence 110 1 111234677888899999887776
No 231
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=24.28 E-value=93 Score=32.18 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=54.3
Q ss_pred EEEEEEEeeCCC-CCccchHHHHHHHHHcCCCEEEEccccCccCC-----------cCceeeccCchhHHHHHHHHHHcC
Q 039348 39 KVIISGSIHYPR-STPEMWPDLIQKAKDGGLDAIETYIFWNVHEP-----------RRREYDFSGNLDFVKFFKLVQDAG 106 (651)
Q Consensus 39 ~~i~sG~~Hy~r-~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp-----------~~G~fdF~g~~dL~~fl~la~~~G 106 (651)
+.+..|+-+..| ++.+.|.+.++++++.|++.|-+.-. .|. .+...++.|..+|.+++.+.+...
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~---~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGP---AERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEech---hhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 333444445555 68899999999999888887754321 111 234567888889999999999999
Q ss_pred CEEEEecCcee
Q 039348 107 LYAILRIGPYV 117 (651)
Q Consensus 107 L~Vilr~GPyi 117 (651)
+.|-...||.-
T Consensus 201 l~I~~Dsg~~H 211 (279)
T cd03789 201 LVVTNDSGPMH 211 (279)
T ss_pred EEEeeCCHHHH
Confidence 98888877643
No 232
>PRK07534 methionine synthase I; Validated
Probab=24.21 E-value=6e+02 Score=27.82 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=42.1
Q ss_pred HHHHHHHHHc-CCEEEEecCceeeeecCCCCCCcccccCCCCccccCChh-HHHHHHHHHHHHHHHHHhccccccCCCcE
Q 039348 96 VKFFKLVQDA-GLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDI-FKNEMQVFTTKIVNMCKEANLFASQGGPI 173 (651)
Q Consensus 96 ~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~-y~~~~~~~~~~i~~~l~~~~l~~~~gGpI 173 (651)
..++++.... .+.+++.| |.|.|.|... ..... .+|. |.+.+++| . ..|=.|
T Consensus 221 ~~l~~~~~~~~~~pl~vyP---------NaG~p~~~~~--~~~~~-~~p~~~~~~~~~~--------~------~~Ga~i 274 (336)
T PRK07534 221 RTVLGFTAQGPERPIIAKG---------NAGIPKYVDG--HIHYD-GTPELMAEYAVLA--------R------DAGARI 274 (336)
T ss_pred HHHHHHHHhcCCCeEEEEc---------CCCCcccCCC--ccccC-CCHHHHHHHHHHH--------H------HcCCcE
Confidence 5556655443 57778886 7789988642 22222 2343 33333333 2 124356
Q ss_pred EEecccccccccccccCcchHHHHHHHHHHHHh
Q 039348 174 ILAQIENEYGNIMEKYGDAGKQYIKWCANMAVA 206 (651)
Q Consensus 174 I~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~ 206 (651)
| |.+ || ...+|++.|++++..
T Consensus 275 I--------GGC---CG-TtP~hI~~la~~l~~ 295 (336)
T PRK07534 275 I--------GGC---CG-TMPEHLAAMRAALDA 295 (336)
T ss_pred E--------eee---cC-CCHHHHHHHHHHHcc
Confidence 5 442 44 788999999998865
No 233
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=23.97 E-value=1.1e+02 Score=32.08 Aligned_cols=45 Identities=29% Similarity=0.547 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEE-EecCceeee
Q 039348 57 PDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI-LRIGPYVCA 119 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi-lr~GPyi~a 119 (651)
.+.++++|+.|+ -|+.+| +|.+ +-++.|++.|-..| |-+|||..+
T Consensus 116 ~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 116 KPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 567888888888 667644 5553 45788888888877 899998765
No 234
>PRK07094 biotin synthase; Provisional
Probab=23.91 E-value=72 Score=34.05 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCEEEEccc---cCccCCcCceeeccCchhHHHHHHHHHHcCCEEE
Q 039348 57 PDLIQKAKDGGLDAIETYIF---WNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI 110 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~---Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi 110 (651)
++.+++||++|++.|...+= -..++-.....+++ +..+.++.++++|+.|.
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v~ 182 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEVG 182 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCeec
Confidence 57889999999998876431 11222111234444 78888999999998753
No 235
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.89 E-value=2.5e+02 Score=22.47 Aligned_cols=56 Identities=11% Similarity=0.217 Sum_probs=37.5
Q ss_pred cchHHHHHHHHHcCCCEEEEccc-cCccCCcCceeeccCchhHHHHHHHHHHcCCEEE
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIF-WNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI 110 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~-Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi 110 (651)
..-.+.++-+.+.|+|..+++.. ....+...-.+..++ .+.+++++..++.|..|+
T Consensus 13 G~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 13 GQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 34567888899999999999754 111111122445544 456799999999997654
No 236
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=23.88 E-value=45 Score=32.82 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHc-CCEEEEecCceeeeec---CCCCCCcccccCC
Q 039348 93 LDFVKFFKLVQDA-GLYAILRIGPYVCAEW---NYGGFPMWLHNTP 134 (651)
Q Consensus 93 ~dL~~fl~la~~~-GL~Vilr~GPyi~aEw---~~GG~P~WL~~~p 134 (651)
..+..|++.++++ |..++|=.++...... .....|.||.+.+
T Consensus 103 ~~~~~f~~~v~~~~G~~~~iY~~~~~~~~~~~~~~~~~~lWiA~Y~ 148 (184)
T cd06525 103 DYVLRFIEEFEKLSGLKVGIYTYTSFINNNLDSRLSSYPLWIANYG 148 (184)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecHHHHHHhccccccCCCeEEEecc
Confidence 4678999999998 9988887777543221 2345688887754
No 237
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.84 E-value=1.3e+02 Score=27.42 Aligned_cols=44 Identities=18% Similarity=0.347 Sum_probs=31.3
Q ss_pred CCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEE
Q 039348 51 STPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI 110 (651)
Q Consensus 51 ~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi 110 (651)
.+++...+.++.+++.|+..|=.. +| ..-.+++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 377889999999999998877551 11 256789999999999976
No 238
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.75 E-value=74 Score=33.04 Aligned_cols=60 Identities=10% Similarity=0.035 Sum_probs=38.5
Q ss_pred cchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 54 EMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 54 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
+.+++.++.++++|+++|.+...+....+.+..+.- -...|.++.+.|+++|+.+.+.+-
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKR-VIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHH-HHHHHHHHHHhccCCCCEEEEeCC
Confidence 346888999999999988653322111111211211 124678888888999999999863
No 239
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=23.72 E-value=2.1e+02 Score=34.45 Aligned_cols=61 Identities=11% Similarity=0.228 Sum_probs=43.2
Q ss_pred CCccchHHHHHHHHHcCCCEEEEccccCc---cCCcCce---eecc-C-chhHHHHHHHHHHcCCEEEE
Q 039348 51 STPEMWPDLIQKAKDGGLDAIETYIFWNV---HEPRRRE---YDFS-G-NLDFVKFFKLVQDAGLYAIL 111 (651)
Q Consensus 51 ~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~---hEp~~G~---fdF~-g-~~dL~~fl~la~~~GL~Vil 111 (651)
+.++.-++-|+-+|+.|+++|+.--.-.. ..+.|++ ..|+ | .......+.+.+++|+...+
T Consensus 69 Vspe~Fe~qL~~Lk~nGY~~ISl~el~~~~~g~~~LP~K~VaLTFDDGy~s~yt~A~PILkkygvpATf 137 (671)
T PRK14582 69 VRTSALREQFAWLRENGYQPVSVAQILEAHRGGKPLPEKAVLLTFDDGYSSFYTRVFPILQAFQWPAVW 137 (671)
T ss_pred cCHHHHHHHHHHHHHCcCEEccHHHHHHHHhcCCCCCCCeEEEEEEcCCCchHHHHHHHHHHcCCCEEE
Confidence 35667889999999999999998755332 2333443 2454 2 34567888999999998764
No 240
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=23.63 E-value=64 Score=34.27 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=42.7
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.-+.+|+.|-+.|-+-|+|..-||+-.+= -..-|++|...|..++|-.+|.|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e~neq---k~a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDEINEQ---KLAYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchHHhHH---HHHHHHHHHHHhhhcCCceeEee
Confidence 35679999999999999999999932222 22368999999999999999987
No 241
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=23.60 E-value=2.3e+02 Score=31.90 Aligned_cols=102 Identities=22% Similarity=0.284 Sum_probs=65.1
Q ss_pred cCCCEEEEccc---cCccCCcC--ceeeccC-c-----hhH---HHHHHHHHHcC---CEEEEecCceeeeecCCCCCCc
Q 039348 66 GGLDAIETYIF---WNVHEPRR--REYDFSG-N-----LDF---VKFFKLVQDAG---LYAILRIGPYVCAEWNYGGFPM 128 (651)
Q Consensus 66 ~G~NtV~~yv~---Wn~hEp~~--G~fdF~g-~-----~dL---~~fl~la~~~G---L~Vilr~GPyi~aEw~~GG~P~ 128 (651)
+|+|..++++. .+.||-.= -..||+- + .|+ ..||+.|++.. |....-| | .-|.
T Consensus 136 l~y~~gRVPiAS~DFS~r~YsYdDv~~Df~l~nF~L~~ED~q~KIP~ik~A~~~~~~~lklfAsP-------W---saPg 205 (518)
T KOG2566|consen 136 LGYNIGRVPIASCDFSTREYSYDDVPDDFQLKNFSLPEEDLKLKIPFIKKAQKYNQGNLKLFASP-------W---SAPG 205 (518)
T ss_pred ccceeeeeeecccccccceeeccCCcccccccccCCchhhheeecHHHHHHHHhcCCCceEEecC-------C---CCCc
Confidence 56677777776 55565431 1234431 1 122 36899998865 5555554 4 3699
Q ss_pred ccccCCCCc----cc-cCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEeccccccc
Q 039348 129 WLHNTPGIQ----LR-TDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYG 183 (651)
Q Consensus 129 WL~~~p~i~----~R-t~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg 183 (651)
||+....|+ ++ .....|-+...+|+-+.++.+.++.+ ..-++-++||--
T Consensus 206 WlKttg~m~G~G~l~g~~~d~yhqtya~YfvkFleaY~~~gi------~FWglt~qNEPs 259 (518)
T KOG2566|consen 206 WLKTTGRMNGKGALLGDPGDIYHQTYARYFVKFLEAYAKHGI------QFWGLTTQNEPS 259 (518)
T ss_pred eeeecccccccccccCCCCchhHHHHHHHHHHHHHHHHhcCc------eEEeecccCCCC
Confidence 998743321 33 33457888889999999999987765 356777899974
No 242
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.53 E-value=1.5e+02 Score=31.31 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=52.8
Q ss_pred cEEECCEEEEEEEEEeeCCCC-CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeecc--CchhHHHHHHHHHHcCC
Q 039348 31 ALIIDGQRKVIISGSIHYPRS-TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFS--GNLDFVKFFKLVQDAGL 107 (651)
Q Consensus 31 ~~~idG~~~~i~sG~~Hy~r~-~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~--g~~dL~~fl~la~~~GL 107 (651)
.+.+.+..++++.| +-.+ ..+.-.+..+.+|+.|....+.|+|=+...| +.|. |..-|..+-+.|++.||
T Consensus 18 ~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~~~~~~~Gl 90 (260)
T TIGR01361 18 GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLRRAADEHGL 90 (260)
T ss_pred CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHHHHHHHhCC
Confidence 34555444666777 3232 4455567788889999998888887754444 3455 45678888899999999
Q ss_pred EEEEec
Q 039348 108 YAILRI 113 (651)
Q Consensus 108 ~Vilr~ 113 (651)
.++-.|
T Consensus 91 ~~~t~~ 96 (260)
T TIGR01361 91 PVVTEV 96 (260)
T ss_pred CEEEee
Confidence 988775
No 243
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=23.50 E-value=2.5e+02 Score=27.89 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHcCCEEEEecCceeeeecCC-----C--CCCcccccCCC
Q 039348 93 LDFVKFFKLVQDAGLYAILRIGPYVCAEWNY-----G--GFPMWLHNTPG 135 (651)
Q Consensus 93 ~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~-----G--G~P~WL~~~p~ 135 (651)
..+..|++.+++.|.+++|=.+++.....-. . ..|.||.+.+.
T Consensus 108 ~~~~~f~~~v~~~G~~~~iYt~~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 157 (196)
T cd06415 108 SAILAFMDTIKDAGYKPMLYSYKPLLLNNVDYSQIIAKYPNSLWVAAYPT 157 (196)
T ss_pred HHHHHHHHHHHHhCCCcEEEecHHHHHhccCHHHHHhhCCCCeEEEcCCC
Confidence 3578899999999988887776654332211 1 13588877653
No 244
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=23.50 E-value=3.9e+02 Score=25.45 Aligned_cols=105 Identities=20% Similarity=0.278 Sum_probs=63.3
Q ss_pred ceeeccCchh-HHHHHHHHHHc-CCEEEEecCceeeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHh
Q 039348 85 REYDFSGNLD-FVKFFKLVQDA-GLYAILRIGPYVCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKE 162 (651)
Q Consensus 85 G~fdF~g~~d-L~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~ 162 (651)
|.|=++.... +..|++...+. ...+|.|--|=..-++ +....||.+.++- ++=+|.-+... ...+.+.+++
T Consensus 1 Gayl~~~~~~~~~~~l~~~~~~~~~l~itR~~Pe~~~~~--~~~viWlT~~~~~--~~I~Pt~L~~l---~~~i~~fl~~ 73 (136)
T PF05763_consen 1 GAYLISSKEKKIYEFLKELSEGRPGLAITRRNPEEWREK--NTPVIWLTKVEGE--NAISPTNLHKL---LDTIVRFLKE 73 (136)
T ss_pred CcEEecCcchhHHHHHHHHhccCcEEEEEecChhhcccc--CCcEEEEeccCCC--CccCchhhHHH---HHHHHHHHHh
Confidence 4455554333 77788887555 4667888545444444 4567899986631 44566555433 3334555552
Q ss_pred ccccccCCCcEEEec------ccccccccccccCcchHHHHHHHHHHHHhcCCC
Q 039348 163 ANLFASQGGPIILAQ------IENEYGNIMEKYGDAGKQYIKWCANMAVAQNIS 210 (651)
Q Consensus 163 ~~l~~~~gGpII~~Q------IENEyg~~~~~~~~~~~~y~~~l~~~~~~~gi~ 210 (651)
+++.||.+. +||.+- .--+|+..|+|.+...|-.
T Consensus 74 ------~~~~vViiD~lEYL~l~NgF~--------~v~KFL~~LkD~~~~~~~~ 113 (136)
T PF05763_consen 74 ------NGNGVVIIDGLEYLILENGFE--------SVLKFLASLKDYALLNNGT 113 (136)
T ss_pred ------CCCcEEEEecHHHHHHHcCHH--------HHHHHHHHhHHHeeccCCE
Confidence 345688887 455553 3457999999998665544
No 245
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=23.38 E-value=1.4e+02 Score=30.16 Aligned_cols=63 Identities=19% Similarity=0.320 Sum_probs=39.0
Q ss_pred EEeeCCCCCccc--hHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHc-CCEEE-EecCc
Q 039348 44 GSIHYPRSTPEM--WPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDA-GLYAI-LRIGP 115 (651)
Q Consensus 44 G~~Hy~r~~~~~--W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~-GL~Vi-lr~GP 115 (651)
+++|.|..+|+. |.+.+++|++.|.+.|.+-+. +. +.+....|.+|+..+++. +..+| +..|+
T Consensus 118 ~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~-----~~----~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~ 184 (224)
T PF01487_consen 118 LSYHDFEKTPSWEELIELLEEMQELGADIVKIAVM-----AN----SPEDVLRLLRFTKEFREEPDIPVIAISMGE 184 (224)
T ss_dssp EEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE------S----SHHHHHHHHHHHHHHHHHTSSEEEEEEETG
T ss_pred EEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEec-----cC----CHHHHHHHHHHHHHHhhccCCcEEEEEcCC
Confidence 469987765554 889999999999999987432 21 122223466666666654 67776 56664
No 246
>PRK10658 putative alpha-glucosidase; Provisional
Probab=23.29 E-value=1.7e+02 Score=35.15 Aligned_cols=63 Identities=17% Similarity=0.313 Sum_probs=45.0
Q ss_pred chHHHHHHHHHcCCCEEEEc--cccCccCC-cCceeeccCc--hhHHHHHHHHHHcCCEEEEecCceeee
Q 039348 55 MWPDLIQKAKDGGLDAIETY--IFWNVHEP-RRREYDFSGN--LDFVKFFKLVQDAGLYAILRIGPYVCA 119 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~y--v~Wn~hEp-~~G~fdF~g~--~dL~~fl~la~~~GL~Vilr~GPyi~a 119 (651)
.-.+.++++++.|+-+=.+. .+|. .. .-+.|.|.-. -|..++++..++.|+++++.+=|||..
T Consensus 284 ~v~~~~~~~r~~~iP~d~i~lD~~w~--~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 284 TVNSFIDGMAERDLPLHVFHFDCFWM--KEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred HHHHHHHHHHHcCCCceEEEEchhhh--cCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 34677899999998754333 3453 22 1245666532 288999999999999999999998864
No 247
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=23.26 E-value=1.3e+02 Score=32.42 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=45.9
Q ss_pred EEEEeeCC-CCCccchHHHHHHHHHcCCCEEEEccccCccC-------------CcCceeeccCchhHHHHHHHHHHcCC
Q 039348 42 ISGSIHYP-RSTPEMWPDLIQKAKDGGLDAIETYIFWNVHE-------------PRRREYDFSGNLDFVKFFKLVQDAGL 107 (651)
Q Consensus 42 ~sG~~Hy~-r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hE-------------p~~G~fdF~g~~dL~~fl~la~~~GL 107 (651)
..|.-+.. |||.+.|.+.++.+++.|+..|= ++.-.| +.+...|..|..+|..+..+.+...+
T Consensus 189 ~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl---~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l 265 (352)
T PRK10422 189 QPTARQIFKCWDNDKFSAVIDALQARGYEVVL---TSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQL 265 (352)
T ss_pred ecCCCccccCCCHHHHHHHHHHHHHCCCeEEE---EcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCE
Confidence 33433333 47999999999999888876553 343222 11234567777778888887777777
Q ss_pred EEEEecCc
Q 039348 108 YAILRIGP 115 (651)
Q Consensus 108 ~Vilr~GP 115 (651)
+|--..||
T Consensus 266 ~v~nDSGp 273 (352)
T PRK10422 266 FIGVDSAP 273 (352)
T ss_pred EEecCCHH
Confidence 76666554
No 248
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.99 E-value=1.8e+02 Score=28.71 Aligned_cols=41 Identities=12% Similarity=0.061 Sum_probs=33.4
Q ss_pred HHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEe
Q 039348 59 LIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 59 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr 112 (651)
.++++.++|.+.|.+..... ...+.++++.|+++|+.+++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 68899999999999854431 136789999999999999876
No 249
>PLN02389 biotin synthase
Probab=22.98 E-value=1.1e+02 Score=34.05 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=33.4
Q ss_pred hHHHHHHHHHcCCCEEEEccc--cCccCCcCceeeccCchhHHHHHHHHHHcCCEEE
Q 039348 56 WPDLIQKAKDGGLDAIETYIF--WNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI 110 (651)
Q Consensus 56 W~~~l~k~Ka~G~NtV~~yv~--Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi 110 (651)
=++.++++|++|++.+..-+- -..+.-.-..-+|+ +..+.++.|++.||.|.
T Consensus 177 ~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 478899999999998766211 11111111112444 66688999999999874
No 250
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=22.91 E-value=1.1e+02 Score=31.88 Aligned_cols=45 Identities=24% Similarity=0.527 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEE-EecCceeee
Q 039348 57 PDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI-LRIGPYVCA 119 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi-lr~GPyi~a 119 (651)
.+.++++|+.|+. |+. +.+|.+ +-++.|++.|-..| |-+|||..+
T Consensus 113 ~~~i~~l~~~gI~-VSL-----FiDPd~------------~qi~~A~~~GAd~VELhTG~Ya~a 158 (234)
T cd00003 113 KPIIERLKDAGIR-VSL-----FIDPDP------------EQIEAAKEVGADRVELHTGPYANA 158 (234)
T ss_pred HHHHHHHHHCCCE-EEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 5667888888884 666 445543 45778888888877 888888753
No 251
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=22.85 E-value=1.4e+02 Score=31.52 Aligned_cols=66 Identities=9% Similarity=0.076 Sum_probs=46.5
Q ss_pred CCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHH-HcCCEEEEecC
Q 039348 49 PRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQ-DAGLYAILRIG 114 (651)
Q Consensus 49 ~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~-~~GL~Vilr~G 114 (651)
.+.+.+.=.+..+.+-++|++.|++..+-...+...|..-|.....+.++.+..+ +.-+-+++|++
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 3457777788999999999999999988876656666666664445555555553 44444566765
No 252
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=22.83 E-value=2.2e+02 Score=30.72 Aligned_cols=68 Identities=13% Similarity=0.372 Sum_probs=48.9
Q ss_pred CccchHHHHHHHHHcCCCEEEEccc-cCc-cCCcCce-----eeccCc--hhHHHHHHHHHHcCCEEEEecCceeee
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIF-WNV-HEPRRRE-----YDFSGN--LDFVKFFKLVQDAGLYAILRIGPYVCA 119 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~-Wn~-hEp~~G~-----fdF~g~--~dL~~fl~la~~~GL~Vilr~GPyi~a 119 (651)
+.+.-.+.++++++.||-+=.+++= |.. ++..-|. |+|.-. -|..++++..++.|++|++.+=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 5666789999999999987666653 532 2322232 333322 389999999999999999988787753
No 253
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=22.34 E-value=4.5e+02 Score=29.81 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=56.6
Q ss_pred CcEEECCEEEEEEEEEeeCCCCC---ccchHHHHHHHHHcCCCE--E--EEccccCccCCcCceeeccCchhHHHHHHHH
Q 039348 30 NALIIDGQRKVIISGSIHYPRST---PEMWPDLIQKAKDGGLDA--I--ETYIFWNVHEPRRREYDFSGNLDFVKFFKLV 102 (651)
Q Consensus 30 ~~~~idG~~~~i~sG~~Hy~r~~---~~~W~~~l~k~Ka~G~Nt--V--~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la 102 (651)
+...+.+.-|.||.+.-+-++.+ ++.=+...+.+++.|++. | ...-.-|+-.|.+..++++ ..-|.+-|+.|
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA 227 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRC 227 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 34556778888898776665543 233344556777888763 3 2222278888888887776 44677888999
Q ss_pred HHcCCE-EEEecC
Q 039348 103 QDAGLY-AILRIG 114 (651)
Q Consensus 103 ~~~GL~-Vilr~G 114 (651)
.+.|.. |++-||
T Consensus 228 ~~LGa~~VV~HPG 240 (413)
T PTZ00372 228 EQLGIKLYNFHPG 240 (413)
T ss_pred HHcCCCEEEECCC
Confidence 999998 557777
No 254
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=22.32 E-value=74 Score=34.58 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCCEEE-Ec-cccC---ccCCcCceeeccCchhHHHHHHHHHHcCCEEE
Q 039348 57 PDLIQKAKDGGLDAIE-TY-IFWN---VHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI 110 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~-~y-v~Wn---~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi 110 (651)
++.+++||++|++.+- +. -.-+ .+.-.++...++ +-.+.++.|+++||.+.
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v~ 196 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPTT 196 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCccc
Confidence 6789999999999874 11 0000 001123333333 45689999999999764
No 255
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=22.03 E-value=69 Score=34.66 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=65.9
Q ss_pred EEEEEEEEeeCCCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEE-EecCce
Q 039348 38 RKVIISGSIHYPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI-LRIGPY 116 (651)
Q Consensus 38 ~~~i~sG~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi-lr~GPy 116 (651)
..++++-+..--+ -|+.|++.+..+-++|+|.|+- +|+.- + |..+|.++|+++|..++ +|..|.
T Consensus 34 ~~liiGiA~~GG~-lp~~w~~~i~~Ai~~Gl~IvsG-----LH~~L------~---ddpel~~~A~~~g~~i~DvR~p~~ 98 (301)
T PF07755_consen 34 DTLIIGIAPAGGR-LPPSWRPVILEAIEAGLDIVSG-----LHDFL------S---DDPELAAAAKKNGVRIIDVRKPPK 98 (301)
T ss_dssp SEEEE---STTHC-CHCCHHHHHHHHHHTT-EEEE------SSS-H------C---CHHHHHCCHHCCT--EEETTS--S
T ss_pred CEEEEecCcCCCc-CCHHHHHHHHHHHHcCCCEEec-----Chhhh------c---cCHHHHHHHHHcCCeEeeccCCCc
Confidence 3455554444334 3488999999999999999997 77743 2 67799999999999876 553221
Q ss_pred eeeecCCCCCCcccccCCCCccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEecccccccccccccCcchHHH
Q 039348 117 VCAEWNYGGFPMWLHNTPGIQLRTDNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKQY 196 (651)
Q Consensus 117 i~aEw~~GG~P~WL~~~p~i~~Rt~d~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y 196 (651)
- ++.| .+ +. ..-.+++|++= |.. +..+|.+
T Consensus 99 ~--------~~~~----~g-~~----------------------------~~~~~~rv~~v-----GTD----cavGK~t 128 (301)
T PF07755_consen 99 D--------LPVA----SG-RI----------------------------REVKAKRVLTV-----GTD----CAVGKMT 128 (301)
T ss_dssp S-----------------S-GG----------------------------GG-SSEEEEEE-----ESS----SSSSHHH
T ss_pred c--------cccc----cC-cc----------------------------ccCCCCEEEEE-----ccC----ccccHHH
Confidence 0 0000 00 00 01245777763 542 2367877
Q ss_pred HH-HHHHHHHhcCCCcCeEEecC
Q 039348 197 IK-WCANMAVAQNISEPWIMCQQ 218 (651)
Q Consensus 197 ~~-~l~~~~~~~gi~vP~~~~~~ 218 (651)
-. .|.+.+++.|+++-++-..|
T Consensus 129 Tal~L~~~l~~~G~~a~fvaTGQ 151 (301)
T PF07755_consen 129 TALELRRALRERGINAGFVATGQ 151 (301)
T ss_dssp HHHHHHHHHHHTT--EEEEE-SH
T ss_pred HHHHHHHHHHHcCCCceEEecCC
Confidence 64 78889999999877665443
No 256
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.97 E-value=1.4e+02 Score=33.11 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=37.2
Q ss_pred chHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 55 MWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 55 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.|...++++++.|++.|..+...-.-....+. + -...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~--~----~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGK--I----VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccc--c----CCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999988765433222211122 1 34689999999999999774
No 257
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=21.71 E-value=74 Score=34.75 Aligned_cols=52 Identities=12% Similarity=0.223 Sum_probs=33.1
Q ss_pred hHHHHHHHHHcCCCEEE-----EccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEE
Q 039348 56 WPDLIQKAKDGGLDAIE-----TYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAI 110 (651)
Q Consensus 56 W~~~l~k~Ka~G~NtV~-----~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vi 110 (651)
-++.++++|++|++.+- ++..--.+.-.++....+ +..+.++.|+++|+.+-
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~~ 205 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKTN 205 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCcc
Confidence 35679999999997654 222222233334444333 45588999999999864
No 258
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=21.48 E-value=2.1e+02 Score=33.79 Aligned_cols=74 Identities=26% Similarity=0.509 Sum_probs=50.5
Q ss_pred ECCEEEEEEEEEee--CCC-CCccchHHHHHHHHHcCCCEEEEccccCccCCcC---------ceeeccCchhHHHHHHH
Q 039348 34 IDGQRKVIISGSIH--YPR-STPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRR---------REYDFSGNLDFVKFFKL 101 (651)
Q Consensus 34 idG~~~~i~sG~~H--y~r-~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~---------G~fdF~g~~dL~~fl~l 101 (651)
.+|+|. +++|-+- |-| |.+++=++.+++++.+|++ +|.+ -|+. --|+-+-..-|..+|..
T Consensus 11 A~g~r~-fiCGVvEGFYGRPWt~EQRK~LFrrl~~~gl~---tYlY----APKDDyKHR~~WRElY~vEEa~~L~~Li~a 82 (891)
T KOG3698|consen 11 AVGNRK-FICGVVEGFYGRPWTPEQRKHLFRRLNQLGLT---TYLY----APKDDYKHRSLWRELYNVEEATYLRNLIEA 82 (891)
T ss_pred ccccce-eEEEeeccccCCCCCHHHHHHHHHHHHhcccc---eeee----cccchhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455554 4677664 777 6999999999999999999 4433 1111 11222223368889999
Q ss_pred HHHcCCEEEEecCc
Q 039348 102 VQDAGLYAILRIGP 115 (651)
Q Consensus 102 a~~~GL~Vilr~GP 115 (651)
|+++++-.+-.+.|
T Consensus 83 Ake~~i~F~YAiSP 96 (891)
T KOG3698|consen 83 AKENNINFVYAISP 96 (891)
T ss_pred HHhcCceEEEEcCC
Confidence 99999998755543
No 259
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.43 E-value=3.9e+02 Score=20.66 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=38.9
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCCcCce----eecc--CchhHHHHHHHHHHcCCEEE
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRRE----YDFS--GNLDFVKFFKLVQDAGLYAI 110 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~----fdF~--g~~dL~~fl~la~~~GL~Vi 110 (651)
.|....+.++.+.+.|+|.+++...=...+-.+|. +.++ ...+++.+++..++.|..|.
T Consensus 8 ~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 8 RPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 35567889999999999999875321111001233 3333 33578899999999997663
No 260
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=21.35 E-value=1.4e+02 Score=31.91 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=47.0
Q ss_pred CCCCccchHHHHHHHHHcCCCEEEEcccc-------Cc-cC--CcCceeeccCchhHHHHHHHHHHcCCEEEEecCc
Q 039348 49 PRSTPEMWPDLIQKAKDGGLDAIETYIFW-------NV-HE--PRRREYDFSGNLDFVKFFKLVQDAGLYAILRIGP 115 (651)
Q Consensus 49 ~r~~~~~W~~~l~k~Ka~G~NtV~~yv~W-------n~-hE--p~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~GP 115 (651)
-|||.+.|.+.++.+.+-|+..|-++-+- .. .+ +.+...|+.|..+|..++.+.+...++|=-..||
T Consensus 195 K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DSGp 271 (344)
T TIGR02201 195 KCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDSVP 271 (344)
T ss_pred cCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCCHH
Confidence 34799999999999988787766543221 00 01 2234578888888999998888888877666665
No 261
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=20.80 E-value=2.2e+02 Score=30.06 Aligned_cols=63 Identities=24% Similarity=0.202 Sum_probs=40.3
Q ss_pred CccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHc-CCEEEEecCc
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDA-GLYAILRIGP 115 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~-GL~Vilr~GP 115 (651)
.++.|.+..++++++|++.|++.+.-... ...|..--...+.+.++++.+++. ++-|.++.+|
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~-~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNV-KGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCC-CCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 46889999999999999999997542211 111221111124567788888876 7777766543
No 262
>PRK04302 triosephosphate isomerase; Provisional
Probab=20.75 E-value=1.8e+02 Score=29.51 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=40.8
Q ss_pred eeCCCCCccch--HHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEecC
Q 039348 46 IHYPRSTPEMW--PDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRIG 114 (651)
Q Consensus 46 ~Hy~r~~~~~W--~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~G 114 (651)
-|+....+... +.-++.+|++|++.|-+ -|..++ -.|+ .+.++++.|+++||.+|+..|
T Consensus 62 q~~~~~~~G~~tg~~~~~~l~~~G~~~vii-----~~ser~--~~~~---e~~~~v~~a~~~Gl~~I~~v~ 122 (223)
T PRK04302 62 QHVDPVEPGSHTGHILPEAVKDAGAVGTLI-----NHSERR--LTLA---DIEAVVERAKKLGLESVVCVN 122 (223)
T ss_pred ccCCCCCCCCchhhhHHHHHHHcCCCEEEE-----eccccc--cCHH---HHHHHHHHHHHCCCeEEEEcC
Confidence 46655433322 33488999999999987 342222 2344 589999999999999998765
No 263
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=20.53 E-value=82 Score=31.97 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=38.3
Q ss_pred CCCCCccchHHHHHHHHHcCCCEEEEccccCccCCcCcee-eccCchhHHHHHHHHHH--cCCEEEEecCceeee
Q 039348 48 YPRSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREY-DFSGNLDFVKFFKLVQD--AGLYAILRIGPYVCA 119 (651)
Q Consensus 48 y~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~f-dF~g~~dL~~fl~la~~--~GL~Vilr~GPyi~a 119 (651)
+.|+..++--..-+.+|+.|+.++-.---=..|-...=-| .-.| .++ +...+ ..-++|+||||..|-
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KG--EvE---~~v~eL~F~~~~i~RPG~ll~~ 172 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKG--EVE---RDVIELDFKHIIILRPGPLLGE 172 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccc--hhh---hhhhhccccEEEEecCcceecc
Confidence 4577888888888999999998876533333333222111 0111 111 11222 234689999998774
No 264
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.46 E-value=1.9e+02 Score=32.94 Aligned_cols=58 Identities=14% Similarity=0.272 Sum_probs=43.8
Q ss_pred CccchHHHHHHHHHcCCCEEEEccc----cCccC-----------------------------------CcCceeeccCc
Q 039348 52 TPEMWPDLIQKAKDGGLDAIETYIF----WNVHE-----------------------------------PRRREYDFSGN 92 (651)
Q Consensus 52 ~~~~W~~~l~k~Ka~G~NtV~~yv~----Wn~hE-----------------------------------p~~G~fdF~g~ 92 (651)
+.+.-++.|..|-...+|+...++- |-+-- +..|.|. .
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT---~ 96 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYS---R 96 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccC---H
Confidence 7788899999999999999998863 53210 0112232 3
Q ss_pred hhHHHHHHHHHHcCCEEEEe
Q 039348 93 LDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 93 ~dL~~fl~la~~~GL~Vilr 112 (651)
.|+..+++.|++.|+.||-.
T Consensus 97 ~di~eiv~yA~~rgI~VIPE 116 (445)
T cd06569 97 ADYIEILKYAKARHIEVIPE 116 (445)
T ss_pred HHHHHHHHHHHHcCCEEEEc
Confidence 49999999999999999965
No 265
>PRK08175 aminotransferase; Validated
Probab=20.43 E-value=1.6e+02 Score=32.20 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=37.1
Q ss_pred cchHHHHHHH-HHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEe
Q 039348 54 EMWPDLIQKA-KDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 54 ~~W~~~l~k~-Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr 112 (651)
..|.+.|+++ ++.+-++--+++- +-|.|.--.++-+ .+.+++++|+++|+++|..
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~v~i~-~p~NPtG~~~~~~---~~~~i~~~a~~~~i~ii~D 203 (395)
T PRK08175 148 VDFFNELERAIRESYPKPKMMILG-FPSNPTAQCVELE---FFEKVVALAKRYDVLVVHD 203 (395)
T ss_pred CCcHHHHHHHHhhccCCceEEEEe-CCCCCCCCCCCHH---HHHHHHHHHHHcCcEEEEe
Confidence 3477777654 4433333333443 5578885566655 7899999999999999976
No 266
>PLN03036 glutamine synthetase; Provisional
Probab=20.28 E-value=2.8e+02 Score=31.63 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=45.8
Q ss_pred hHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCc-h---------hH-HHHH-HHHHHcCCEEEEecCceeeeecCC
Q 039348 56 WPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGN-L---------DF-VKFF-KLVQDAGLYAILRIGPYVCAEWNY 123 (651)
Q Consensus 56 W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~-~---------dL-~~fl-~la~~~GL~Vilr~GPyi~aEw~~ 123 (651)
-++..+.+.++|+++-.+ .||-.||||.|.=. . .+ +.++ ++|+++|+.+-+-|=|+ .++|+.
T Consensus 232 ~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~-~gd~~G 305 (432)
T PLN03036 232 SDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPI-EGDWNG 305 (432)
T ss_pred HHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcC-CCCcCC
Confidence 344556789999999888 89999999988621 1 11 2222 35889999999988884 356665
Q ss_pred CCC
Q 039348 124 GGF 126 (651)
Q Consensus 124 GG~ 126 (651)
-|.
T Consensus 306 SGm 308 (432)
T PLN03036 306 AGC 308 (432)
T ss_pred CCc
Confidence 554
No 267
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=20.16 E-value=1.8e+02 Score=31.79 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEec
Q 039348 57 PDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILRI 113 (651)
Q Consensus 57 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr~ 113 (651)
.++|+++.+.|++.|++.++++.. ..+.+.++.|+++|+.|..-+
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~------------~~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA------------DVSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH------------HHHHHHHHHHHHCCCeEEEEE
Confidence 367899999999999998765532 157899999999999987653
No 268
>PLN02231 alanine transaminase
Probab=20.07 E-value=2.8e+02 Score=32.27 Aligned_cols=59 Identities=10% Similarity=0.150 Sum_probs=42.2
Q ss_pred CCCccchHHHHHHHHHcCCCEEEEccccCccCCcCceeeccCchhHHHHHHHHHHcCCEEEEe
Q 039348 50 RSTPEMWPDLIQKAKDGGLDAIETYIFWNVHEPRRREYDFSGNLDFVKFFKLVQDAGLYAILR 112 (651)
Q Consensus 50 r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~fdF~g~~dL~~fl~la~~~GL~Vilr 112 (651)
....+..++.++..+..|.++--+++. |-|.|.=-.++=+ .+.+++++|+++|+++|..
T Consensus 252 ~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 252 GLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 334444555555555566665445554 7789987777665 8999999999999999876
Done!