Query 039353
Match_columns 239
No_of_seqs 107 out of 1076
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:54:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 1.3E-37 2.7E-42 276.1 18.3 204 17-226 239-449 (449)
2 PTZ00206 amino acid transporte 100.0 9.9E-36 2.1E-40 271.8 16.7 205 19-227 256-465 (467)
3 PLN03074 auxin influx permease 100.0 5E-35 1.1E-39 266.8 19.8 215 16-238 230-463 (473)
4 KOG1303 Amino acid transporter 100.0 1.4E-34 3.1E-39 259.6 17.0 220 3-229 216-437 (437)
5 PF01490 Aa_trans: Transmembra 100.0 4.5E-34 9.7E-39 256.3 -0.4 209 15-223 188-408 (409)
6 KOG1305 Amino acid transporter 100.0 7.2E-29 1.6E-33 221.6 17.1 210 17-229 192-408 (411)
7 KOG4303 Vesicular inhibitory a 99.9 5E-30 1.1E-34 217.9 -4.6 214 17-233 300-521 (524)
8 COG0814 SdaC Amino acid permea 99.6 1.3E-14 2.9E-19 130.9 17.6 206 16-223 190-412 (415)
9 TIGR00837 araaP aromatic amino 99.1 1.5E-09 3.3E-14 96.9 14.8 168 17-194 176-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 99.0 5.2E-08 1.1E-12 87.6 19.1 191 15-214 180-390 (394)
11 PRK15132 tyrosine transporter 98.8 3.4E-07 7.5E-12 82.4 17.7 187 21-216 183-389 (403)
12 PRK10483 tryptophan permease; 98.7 9.7E-07 2.1E-11 79.5 16.5 188 19-216 192-400 (414)
13 PRK09664 tryptophan permease T 98.5 8.3E-06 1.8E-10 73.5 17.4 187 20-216 194-401 (415)
14 PRK13629 threonine/serine tran 98.5 1.2E-05 2.5E-10 72.9 17.5 198 20-220 210-440 (443)
15 TIGR00814 stp serine transport 98.5 2.8E-06 6E-11 76.5 12.7 191 17-212 184-396 (397)
16 PRK11021 putative transporter; 98.3 0.00032 6.9E-09 63.4 21.2 57 16-73 174-231 (410)
17 PRK10644 arginine:agmatin anti 98.2 0.00033 7.2E-09 64.0 19.5 61 17-78 189-250 (445)
18 PRK10746 putative transport pr 98.2 0.00063 1.4E-08 62.6 20.9 174 16-194 197-388 (461)
19 TIGR03813 put_Glu_GABA_T putat 98.1 0.00027 5.9E-09 65.1 17.6 52 27-79 202-254 (474)
20 PRK10197 gamma-aminobutyrate t 98.1 0.00037 8E-09 63.8 17.8 172 15-193 177-367 (446)
21 PRK10655 potE putrescine trans 98.1 0.00068 1.5E-08 61.7 19.5 58 18-76 188-246 (438)
22 PRK11387 S-methylmethionine tr 98.1 0.00054 1.2E-08 63.1 18.5 62 17-79 204-266 (471)
23 PRK15049 L-asparagine permease 97.9 0.0015 3.3E-08 60.6 19.1 172 15-193 216-405 (499)
24 PRK10249 phenylalanine transpo 97.9 0.0034 7.3E-08 57.7 21.0 58 16-74 206-264 (458)
25 PRK11357 frlA putative fructos 97.9 0.00026 5.6E-09 64.6 13.6 56 18-74 194-250 (445)
26 PRK10238 aromatic amino acid t 97.9 0.0024 5.3E-08 58.6 19.6 54 16-70 197-251 (456)
27 TIGR00909 2A0306 amino acid tr 97.9 0.00025 5.4E-09 64.3 12.7 170 16-193 192-375 (429)
28 TIGR03810 arg_ornith_anti argi 97.9 0.0018 4E-08 59.5 18.4 169 18-194 194-380 (468)
29 PRK11049 D-alanine/D-serine/gl 97.9 0.0032 6.9E-08 58.0 19.7 59 16-75 208-267 (469)
30 TIGR00908 2A0305 ethanolamine 97.8 0.0032 7E-08 57.4 19.2 56 16-72 188-244 (442)
31 TIGR00913 2A0310 amino acid pe 97.8 0.0033 7.1E-08 57.9 19.2 55 18-73 196-251 (478)
32 PRK10435 cadB lysine/cadaverin 97.8 0.008 1.7E-07 54.8 21.5 63 16-79 184-247 (435)
33 PRK10580 proY putative proline 97.8 0.0068 1.5E-07 55.6 20.5 57 16-73 196-253 (457)
34 PRK10836 lysine transporter; P 97.8 0.0033 7.1E-08 58.2 18.6 61 17-78 203-264 (489)
35 TIGR01773 GABAperm gamma-amino 97.7 0.0044 9.5E-08 56.7 18.4 59 16-75 198-257 (452)
36 TIGR00905 2A0302 transporter, 97.7 0.0079 1.7E-07 55.5 20.2 60 17-78 197-257 (473)
37 PF13520 AA_permease_2: Amino 97.7 0.0033 7.1E-08 56.8 16.3 168 20-194 189-375 (426)
38 TIGR00907 2A0304 amino acid pe 97.6 0.0061 1.3E-07 56.2 18.1 59 20-79 218-277 (482)
39 TIGR00906 2A0303 cationic amin 97.6 0.0017 3.7E-08 61.2 13.7 171 16-193 228-410 (557)
40 TIGR03428 ureacarb_perm permea 97.5 0.031 6.7E-07 51.6 21.3 61 18-79 212-273 (475)
41 KOG1287 Amino acid transporter 97.5 0.0065 1.4E-07 55.6 15.8 173 16-198 201-390 (479)
42 TIGR00910 2A0307_GadC glutamat 97.5 0.01 2.3E-07 55.2 17.1 49 22-71 197-246 (507)
43 PRK15238 inner membrane transp 97.4 0.035 7.7E-07 51.5 19.7 53 20-73 212-265 (496)
44 TIGR00930 2a30 K-Cl cotranspor 97.3 0.025 5.4E-07 56.6 18.9 52 21-73 282-334 (953)
45 TIGR00911 2A0308 L-type amino 97.2 0.013 2.9E-07 54.3 15.0 61 17-78 233-294 (501)
46 COG0531 PotE Amino acid transp 97.1 0.045 9.8E-07 49.8 17.4 62 18-80 200-262 (466)
47 COG1113 AnsP Gamma-aminobutyra 96.3 0.078 1.7E-06 48.2 11.7 176 14-193 198-388 (462)
48 PF00324 AA_permease: Amino ac 95.3 0.017 3.7E-07 53.2 3.7 63 17-80 198-261 (478)
49 TIGR00912 2A0309 spore germina 95.0 1.1 2.3E-05 39.6 14.1 162 17-192 176-352 (359)
50 KOG1286 Amino acid transporter 94.5 0.3 6.5E-06 46.0 9.7 174 15-193 228-422 (554)
51 KOG1289 Amino acid transporter 94.3 1.2 2.7E-05 41.5 13.0 67 17-84 250-317 (550)
52 COG0833 LysP Amino acid transp 92.4 6.4 0.00014 36.9 14.4 176 15-193 230-427 (541)
53 COG1457 CodB Purine-cytosine p 91.7 11 0.00023 34.8 16.6 159 17-188 191-356 (442)
54 TIGR00796 livcs branched-chain 91.3 11 0.00023 34.0 15.5 42 35-77 198-243 (378)
55 COG1914 MntH Mn2+ and Fe2+ tra 85.6 28 0.00062 31.7 17.4 57 138-194 322-378 (416)
56 TIGR00800 ncs1 NCS1 nucleoside 78.9 52 0.0011 30.0 15.0 159 15-183 203-378 (442)
57 PF03845 Spore_permease: Spore 74.4 39 0.00084 29.2 10.0 113 15-129 171-294 (320)
58 KOG4812 Golgi-associated prote 73.2 7.9 0.00017 32.4 4.9 76 149-228 161-252 (262)
59 COG3949 Uncharacterized membra 70.7 77 0.0017 28.1 12.0 17 33-49 194-210 (349)
60 PF05805 L6_membrane: L6 membr 68.0 15 0.00032 29.9 5.3 63 166-228 45-117 (195)
61 COG1114 BrnQ Branched-chain am 65.1 1.1E+02 0.0024 27.9 15.5 25 163-191 331-355 (431)
62 KOG2082 K+/Cl- cotransporter K 64.5 1.1E+02 0.0025 30.3 11.2 187 18-214 409-617 (1075)
63 TIGR00813 sss transporter, SSS 63.3 1.1E+02 0.0024 27.3 12.8 40 40-79 223-265 (407)
64 PF05525 Branch_AA_trans: Bran 61.7 1.3E+02 0.0029 27.6 13.6 26 162-191 328-353 (427)
65 PRK12768 CysZ-like protein; Re 61.5 98 0.0021 26.0 13.2 28 41-71 9-36 (240)
66 KOG1288 Amino acid transporter 58.9 1.1E+02 0.0024 30.0 10.0 50 23-73 298-348 (945)
67 PF00474 SSF: Sodium:solute sy 57.9 1.4E+02 0.003 26.6 11.9 35 150-187 350-386 (406)
68 KOG2349 Na+:iodide/myo-inosito 56.5 1.9E+02 0.0041 27.8 11.9 72 8-80 228-303 (585)
69 PRK11375 allantoin permease; P 55.6 1.8E+02 0.0038 27.1 14.4 152 19-183 227-392 (484)
70 TIGR02358 thia_cytX probable h 54.5 1.6E+02 0.0035 26.4 14.1 132 35-183 190-323 (386)
71 PF12794 MscS_TM: Mechanosensi 46.0 2.1E+02 0.0046 25.2 12.9 40 52-91 46-85 (340)
72 PRK04949 putative sulfate tran 41.8 2.1E+02 0.0046 24.1 14.7 46 42-91 19-64 (251)
73 PRK00701 manganese transport p 41.4 2.8E+02 0.0062 25.4 16.9 44 140-187 346-391 (439)
74 PRK11026 ftsX cell division AB 40.0 1.8E+02 0.004 25.3 8.0 28 204-231 280-307 (309)
75 PLN02680 carbon-monoxide oxyge 39.6 1.1E+02 0.0025 25.5 6.3 68 50-119 76-143 (232)
76 cd08766 Cyt_b561_ACYB-1_like P 39.4 1.2E+02 0.0026 23.4 6.0 67 51-119 38-104 (144)
77 PRK12488 acetate permease; Pro 38.8 3.4E+02 0.0075 25.6 20.3 41 40-80 281-324 (549)
78 TIGR00945 tatC Twin arginine t 38.8 2.2E+02 0.0047 23.3 15.9 37 93-129 54-90 (215)
79 cd08764 Cyt_b561_CG1275_like N 38.4 1.9E+02 0.0041 23.9 7.4 78 41-119 46-123 (214)
80 PF07760 DUF1616: Protein of u 37.9 2.5E+02 0.0054 24.1 8.5 42 149-192 5-46 (287)
81 TIGR00439 ftsX putative protei 36.8 2.6E+02 0.0056 24.3 8.5 29 203-231 279-307 (309)
82 TIGR02230 ATPase_gene1 F0F1-AT 36.3 1.6E+02 0.0036 21.2 6.6 22 202-223 75-96 (100)
83 PRK15433 branched-chain amino 36.2 3.5E+02 0.0077 25.0 13.9 25 163-191 332-356 (439)
84 TIGR00327 secE_euk_arch protei 35.5 56 0.0012 21.3 3.1 30 44-77 20-49 (61)
85 PRK13183 psbN photosystem II r 35.4 40 0.00087 20.6 2.2 29 54-82 6-34 (46)
86 COG5052 YOP1 Protein involved 33.8 2.5E+02 0.0054 22.5 10.2 20 174-193 61-80 (186)
87 PF03023 MVIN: MviN-like prote 33.6 3.7E+02 0.0081 24.5 19.0 63 18-81 238-302 (451)
88 TIGR00964 secE_bact preprotein 33.0 97 0.0021 19.4 3.9 21 37-57 5-28 (55)
89 PRK09400 secE preprotein trans 32.8 65 0.0014 20.9 3.1 30 44-77 24-53 (61)
90 COG3476 Tryptophan-rich sensor 32.7 1.2E+02 0.0027 23.8 5.1 54 25-82 17-72 (161)
91 PF07954 DUF1689: Protein of u 31.9 1.5E+02 0.0033 23.0 5.5 60 169-228 33-93 (152)
92 cd08765 Cyt_b561_CYBRD1 Verteb 31.1 2.5E+02 0.0055 21.8 7.4 68 50-119 44-111 (153)
93 CHL00020 psbN photosystem II p 30.3 36 0.00077 20.5 1.4 26 56-81 5-30 (43)
94 PRK10263 DNA translocase FtsK; 28.7 7.5E+02 0.016 26.5 17.4 33 45-77 14-46 (1355)
95 PF02468 PsbN: Photosystem II 28.3 42 0.00091 20.2 1.4 26 57-82 6-31 (43)
96 cd08763 Cyt_b561_CYB561 Verteb 27.7 2.8E+02 0.0061 21.2 7.7 68 50-119 37-104 (143)
97 cd08763 Cyt_b561_CYB561 Verteb 25.8 1.7E+02 0.0036 22.5 4.8 28 197-224 37-64 (143)
98 PF01102 Glycophorin_A: Glycop 25.4 1.4E+02 0.003 22.4 4.1 24 205-228 66-89 (122)
99 PF02133 Transp_cyt_pur: Perme 25.2 61 0.0013 29.4 2.7 43 34-78 218-260 (440)
100 PRK11017 codB cytosine permeas 25.0 5.1E+02 0.011 23.3 11.2 59 20-80 184-244 (404)
101 PTZ00478 Sec superfamily; Prov 24.9 1E+02 0.0022 21.4 3.0 31 42-76 35-65 (81)
102 KOG1172 Na+-independent Cl/HCO 23.7 5.2E+02 0.011 26.1 8.6 75 40-116 339-418 (876)
103 TIGR00834 ae anion exchange pr 22.7 7.3E+02 0.016 25.3 9.6 77 40-116 348-427 (900)
104 TIGR02711 symport_actP cation/ 22.0 6.7E+02 0.015 23.6 22.1 35 40-74 281-315 (549)
105 PF10112 Halogen_Hydrol: 5-bro 21.9 3.2E+02 0.0069 21.9 6.0 37 142-178 9-45 (199)
106 PF10716 NdhL: NADH dehydrogen 21.8 2.8E+02 0.0061 19.1 7.4 50 164-214 14-65 (81)
107 PF03073 TspO_MBR: TspO/MBR fa 21.7 1.9E+02 0.004 22.0 4.4 46 33-81 18-63 (148)
108 CHL00182 tatC Sec-independent 21.5 4.9E+02 0.011 21.9 16.7 37 93-129 75-111 (249)
109 COG4956 Integral membrane prot 21.3 5.7E+02 0.012 22.6 7.5 56 166-223 41-96 (356)
110 PRK11281 hypothetical protein; 21.2 9.7E+02 0.021 25.2 14.5 28 53-80 543-570 (1113)
111 PF04193 PQ-loop: PQ loop repe 20.9 2E+02 0.0043 17.9 3.8 30 24-53 4-34 (61)
112 PF00584 SecE: SecE/Sec61-gamm 20.5 1.4E+02 0.0031 18.6 3.0 17 39-55 8-27 (57)
113 PF04835 Pox_A9: A9 protein co 20.5 2.4E+02 0.0052 17.8 4.0 32 52-84 22-53 (54)
114 PF11345 DUF3147: Protein of u 20.3 3.5E+02 0.0075 19.6 8.0 20 143-162 4-23 (108)
115 PF14985 TM140: TM140 protein 20.0 4.4E+02 0.0095 20.7 7.7 45 157-201 67-111 (181)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=276.14 Aligned_cols=204 Identities=15% Similarity=0.181 Sum_probs=189.5
Q ss_pred hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHH---HHHHHHHHHHHHHHHhhhhhhhhccccccccccccCccc
Q 039353 17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMR---KALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSC 92 (239)
Q Consensus 17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~---~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~ 92 (239)
++.+++..+|+.+||| |.+++.+++++||+|+ +|. .++..+|.++.++|+.+|.+||++|||++++.|+.|+|+
T Consensus 239 ~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~--~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~ 316 (449)
T KOG1304|consen 239 GWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQ--KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ 316 (449)
T ss_pred chhhhHHHHHHHHHHhccceEEEehhhcccChh--hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc
Confidence 4778999999999999 9999999999999999 588 999999999999999999999999999999999999997
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHh
Q 039353 93 VKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIG 172 (239)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~v~~liG 172 (239)
+|+.+.+++++++.+.++||+|.+|..+++|+.++++- ++ .+.++..+.+|..+++++..+|.++|++++++||+|
T Consensus 317 -~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~-~~--~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVG 392 (449)
T KOG1304|consen 317 -EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKF-SE--NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVG 392 (449)
T ss_pred -cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhc-Cc--chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHH
Confidence 89999999999999999999999999999999877542 11 346788899999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039353 173 SFALIPITFVFPSMVFIKVKANTA---RVKKKAWHWFNILLFSLVTVATTVAAVRFV 226 (239)
Q Consensus 173 a~~~~~l~fi~P~l~~l~~~~~~~---~~~~~~~~~~~ii~G~~~~v~gt~~si~~l 226 (239)
|++++.+++++|+++++..++.+. .+|+++.|.+++++|++.++.|||.|++++
T Consensus 393 s~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 393 SVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999999999987654 467889999999999999999999999874
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=9.9e-36 Score=271.84 Aligned_cols=205 Identities=12% Similarity=0.056 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCc-ccChHH
Q 039353 19 FNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQM-SCVKWV 96 (239)
Q Consensus 19 ~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~-~~~~~~ 96 (239)
.+++.++|+++||| ||.+.+++++|||||+.+|+.+++..++.++.++|..+|++||+.||++++++|+.|+ |.++..
T Consensus 256 ~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~ 335 (467)
T PTZ00206 256 NRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPA 335 (467)
T ss_pred hHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCch
Confidence 46889999999999 9999999999999999889999999999999999999999999999999999999999 455677
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhh
Q 039353 97 KVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFAL 176 (239)
Q Consensus 97 ~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~v~~liGa~~~ 176 (239)
..++++++.+.++.+||++.+|+++.+++.+..+ .++ .++++|...+..+.+++.++|+++|+++.+++++||+++
T Consensus 336 ~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~-~~~---~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~ 411 (467)
T PTZ00206 336 IMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD-ARK---VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISG 411 (467)
T ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC-ccc---CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHH
Confidence 8888999999999999999999999998876432 122 244567666777777889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039353 177 IPITFVFPSMVFIKV---KANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVI 227 (239)
Q Consensus 177 ~~l~fi~P~l~~l~~---~~~~~~~~~~~~~~~~ii~G~~~~v~gt~~si~~li 227 (239)
+.++|++|+++|++. .+++.++++++.+++++++|++.++.|||+|+.+.+
T Consensus 412 ~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 412 GLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 999999999999984 233344556778999999999999999999999876
No 3
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=5e-35 Score=266.83 Aligned_cols=215 Identities=12% Similarity=0.166 Sum_probs=186.6
Q ss_pred hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccc--cccccCccc
Q 039353 16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTAS--VYLPEQMSC 92 (239)
Q Consensus 16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~--~~Il~n~~~ 92 (239)
.++..++.++++++|+| ||+++|++++|||||+ +|+++...+...+...|+.+|+.||++|||+++ ++.+.|+|+
T Consensus 230 ~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~--~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~ 307 (473)
T PLN03074 230 TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ--KFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPR 307 (473)
T ss_pred hhHHHHHHHHHHHHHHhcccccHHHHHHhccChh--cccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCC
Confidence 46677888889999999 9999999999999998 588888899999999999999999999999876 456778985
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHh
Q 039353 93 VKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIG 172 (239)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~v~~liG 172 (239)
+.+ ..++++++.++++.+||++.+|+.+.+|+....+ + .+....|+.+|..+++.++++|+.+|+|++++||+|
T Consensus 308 ~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~-~----~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvG 381 (473)
T PLN03074 308 SGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH-D----TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVG 381 (473)
T ss_pred chH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc-c----cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 444 6888999999999999999999999999976532 1 245678999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCC-------------chhH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccccc
Q 039353 173 SFALIPITFVFPSMVFIKVKANT-------------ARVK--KKAWHWFNILL-FSLVTVATTVAAVRFVIKDIHHYSFF 236 (239)
Q Consensus 173 a~~~~~l~fi~P~l~~l~~~~~~-------------~~~~--~~~~~~~~ii~-G~~~~v~gt~~si~~li~~~~~~~~f 236 (239)
|++++.++|++|+++|++.++++ .++| ..+.|++++++ |+++.+.|||+|++++++++++|++|
T Consensus 382 s~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f 461 (473)
T PLN03074 382 ALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLF 461 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhh
Confidence 99999999999999999976543 1223 23789999975 55557899999999999999999999
Q ss_pred cC
Q 039353 237 TD 238 (239)
Q Consensus 237 ~~ 238 (239)
+|
T Consensus 462 ~~ 463 (473)
T PLN03074 462 AK 463 (473)
T ss_pred hh
Confidence 86
No 4
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=259.55 Aligned_cols=220 Identities=25% Similarity=0.530 Sum_probs=195.0
Q ss_pred CCCccccccCCchhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Q 039353 3 NKHRNYELKGSKTDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGST 81 (239)
Q Consensus 3 ~~~~~y~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~ 81 (239)
+|..+|....+.+.. ++++|+++|+| ||+++||||++||+|++ |+|++..++.+++.+|+..++.||++|||+
T Consensus 216 ~~~~~~~~~~~~~~~----f~a~g~iaFaf~gH~v~peIq~tMk~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~ 289 (437)
T KOG1303|consen 216 APSGGYLDLGTIPTV----FTALGIIAFAYGGHAVLPEIQHTMKSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDS 289 (437)
T ss_pred CcccCcccCCCCcch----hhhhhheeeeecCCeeeeehHhhcCCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 344555554432222 89999999999 99999999999999995 999999999999999999999999999999
Q ss_pred cccccccCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHc
Q 039353 82 ASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAF 161 (239)
Q Consensus 82 v~~~Il~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~v 161 (239)
++++++.|+.++.|+...+++++.+|++.+++++.+|..+.+|+....++. ++.++..++|.+.|..+++.+.++|+.+
T Consensus 290 ~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~-~~~~~~~~~R~~~Rt~~v~~~~~vA~~~ 368 (437)
T KOG1303|consen 290 VPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHP-DFKKRSLVLRLLVRTFFVAVTTFVALSF 368 (437)
T ss_pred cchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCc-cccccccceeeehhhHHHHHHHHHHHhc
Confidence 999999999767899999999999999999999999999999999886422 2322456799999999999999999999
Q ss_pred cchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 039353 162 PFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFN-ILLFSLVTVATTVAAVRFVIKD 229 (239)
Q Consensus 162 P~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~-ii~G~~~~v~gt~~si~~li~~ 229 (239)
|+|+++++++||+...++++++||++|++.+|.++...+|+.++.+ +++|+++++.+...++++++.+
T Consensus 369 PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 369 PFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999998887777788888888 7999999999999999988753
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.97 E-value=4.5e-34 Score=256.31 Aligned_cols=209 Identities=18% Similarity=0.318 Sum_probs=185.7
Q ss_pred hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchh-hcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCccc
Q 039353 15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVV-KNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSC 92 (239)
Q Consensus 15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~-~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~ 92 (239)
..++++++.++|+++||| ||+++|++++|||+|++ ++++++...++.+++++|+.+|..||++||+++++++++|+++
T Consensus 188 ~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~ 267 (409)
T PF01490_consen 188 FISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPN 267 (409)
T ss_pred cchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCC
Confidence 356789999999999999 99999999999999997 5677999999999999999999999999999999999999997
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc-----ccCCCcchhhHHHHHHHHHHHHHHHHHHHHccchHHH
Q 039353 93 VKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL-----EESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDF 167 (239)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~-----~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~v 167 (239)
+++...++++++.++++.+||++.+|.++.+|+.+.++ +..+.+...+++|+.+|..+++.+.++|+.+|+++++
T Consensus 268 ~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i 347 (409)
T PF01490_consen 268 DDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDI 347 (409)
T ss_pred cccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhh
Confidence 77789999999999999999999999999999988642 0111113456789999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhcCCchhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 039353 168 VNLIGSFALIPITFVFPSMVFIKVKANTARVKKK-----AWHWFNILLFSLVTVATTVAAV 223 (239)
Q Consensus 168 ~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~-----~~~~~~ii~G~~~~v~gt~~si 223 (239)
++++||+++..++|++|+++|++.+++++.+.++ ..++.++++|++.++.|||.++
T Consensus 348 ~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 348 ISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 9999999999999999999999999876543333 4477889999999999999886
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.96 E-value=7.2e-29 Score=221.60 Aligned_cols=210 Identities=15% Similarity=0.274 Sum_probs=187.5
Q ss_pred hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcccChH
Q 039353 17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKW 95 (239)
Q Consensus 17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~~~~ 95 (239)
.+++.+.++|+++||| ||.+..++++|||||+++++.++...+...+.++|..+|..||++|||++++|++.++|..+-
T Consensus 192 ~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~ 271 (411)
T KOG1305|consen 192 SFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILN 271 (411)
T ss_pred hhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccc
Confidence 3478999999999999 999999999999999999999999999999999999999999999999999999999985322
Q ss_pred ------HHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccchHHHHH
Q 039353 96 ------VKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVN 169 (239)
Q Consensus 96 ------~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~v~~ 169 (239)
.....+..+..+.+..+|+..+|++..+++.+.+....+ ++.++.++.+++..++.++.+.|+.+|+++++++
T Consensus 272 ~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~-~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~ 350 (411)
T KOG1305|consen 272 NLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGL-TSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFG 350 (411)
T ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCC-CCccceehhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 246889999999999999999999999888766532211 1356778899999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039353 170 LIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKD 229 (239)
Q Consensus 170 liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~ii~G~~~~v~gt~~si~~li~~ 229 (239)
++||+++..++||+|+++|++..|+ +++++...+...++|+...++|+...+.++..+
T Consensus 351 ~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 351 FVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999987 556778889999999999999999998888764
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.95 E-value=5e-30 Score=217.89 Aligned_cols=214 Identities=15% Similarity=0.277 Sum_probs=190.5
Q ss_pred hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcccChH
Q 039353 17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKW 95 (239)
Q Consensus 17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~~~~ 95 (239)
+..+++.++|+++|+| .|...|+++.+|+||++ |...+.|+-+..+++-..+|.+||++||+.+++.|.+|+|+ .-
T Consensus 300 di~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~--Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qs 376 (524)
T KOG4303|consen 300 DINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQ--FNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QS 376 (524)
T ss_pred EcccCceEEEEEEEeeeceeeccccccccCChhH--heeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cc
Confidence 4456788999999999 99999999999999994 88889999999999999999999999999999999999995 34
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccc-cccCCCc----ch--hhHHHHHHHHHHHHHHHHHHHHccchHHHH
Q 039353 96 VKVFINSSVFLQSMVCQHVFISPIHETLDTKFLK-LEESTFS----RE--NIKRRFFLRGFLFAFNIFVAAAFPFIGDFV 168 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~-~~~~~~~----~~--~~~~r~~~r~~~~~~~~~iA~~vP~~~~v~ 168 (239)
+..++++.+.+..++|||+-.+.+.+.+|+-++. .+...|+ .. -+-+...+|+.+++++.++|+.+|+|..++
T Consensus 377 fk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LM 456 (524)
T KOG4303|consen 377 FKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELM 456 (524)
T ss_pred hhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHH
Confidence 7888899999999999999999999999997664 3334442 12 233445679999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 039353 169 NLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHY 233 (239)
Q Consensus 169 ~liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~ii~G~~~~v~gt~~si~~li~~~~~~ 233 (239)
+++|++.++.++|+.|++||+++.++.....++..+..++++|...++.|.|.|.+++++.++.-
T Consensus 457 Gl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~ 521 (524)
T KOG4303|consen 457 GLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSA 521 (524)
T ss_pred HhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhcc
Confidence 99999999999999999999999988777778899999999999999999999999999988753
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.64 E-value=1.3e-14 Score=130.89 Aligned_cols=206 Identities=17% Similarity=0.123 Sum_probs=149.4
Q ss_pred hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcccCh
Q 039353 16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVK 94 (239)
Q Consensus 16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~~~ 94 (239)
..+..+..++|++.||| +|+++|++++||++++++..+|+...+..+..++|...+..+|..+|+.+.++++++.++.+
T Consensus 190 ~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~ 269 (415)
T COG0814 190 SFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNI 269 (415)
T ss_pred hhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchH
Confidence 45667889999999999 99999999999999997669999999999999999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcHHHH--------------HHhhccccccCCCcchhhHHHH--HHHHHHHHHHHHHH
Q 039353 95 WVKVFINSSVFLQSMVCQHVFISPIHET--------------LDTKFLKLEESTFSRENIKRRF--FLRGFLFAFNIFVA 158 (239)
Q Consensus 95 ~~~~~~~~~~~~~~~~s~pl~~~p~~~~--------------l~~~~~~~~~~~~~~~~~~~r~--~~r~~~~~~~~~iA 158 (239)
. ....+.........+++.+.++.+.. +++.++. ++.+..++..+.+. .............+
T Consensus 270 ~-~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~ 347 (415)
T COG0814 270 S-LLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK-SNSKPGRKKTGLLTFLPPLIFALLYPWGFA 347 (415)
T ss_pred H-HHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh-ccCcccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 3 33333444444446666666555433 2332221 01111012222222 23445555566788
Q ss_pred HHccchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039353 159 AAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAV 223 (239)
Q Consensus 159 ~~vP~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~ii~G~~~~v~gt~~si 223 (239)
...|..+.+++.+|+..+..+.++.|...+.+....+..+.++....+++++|+..+....+.+.
T Consensus 348 ~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 348 IALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLATF 412 (415)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999998877755433322225678888999888887766543
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.13 E-value=1.5e-09 Score=96.95 Aligned_cols=168 Identities=12% Similarity=0.069 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccc-------cc---
Q 039353 17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTAS-------VY--- 85 (239)
Q Consensus 17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~-------~~--- 85 (239)
...++..+++...++| .|++++.+.+|++++ +|+.+|++..+..++.++|+..........+.+.- ++
T Consensus 176 ~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~-~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~ 254 (381)
T TIGR00837 176 YWPYILSALPVCLTSFGFHGNVPSLYKYYDGN-VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDG 254 (381)
T ss_pred cHHHHHHHHHHHHHHHHcccccHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHH
Confidence 4556788899999999 788899999999877 45899999999999999999887666655543211 11
Q ss_pred ---cccC-cccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHc
Q 039353 86 ---LPEQ-MSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAF 161 (239)
Q Consensus 86 ---Il~n-~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~v 161 (239)
...+ .+ +.|...+....-.+.+..|+.-......|.+.+.+++.++ + .+|.....+..+...++|...
T Consensus 255 l~~~~~~~~~-~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~-~------~~~~~~~~~~~~~pl~~a~~~ 326 (381)
T TIGR00837 255 LVNALQGVLK-SSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS-K------KGRFKTGLLTFLPPLVFALFY 326 (381)
T ss_pred HHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-c------CCCchhhhhhHHhHHHHHHHh
Confidence 1112 22 3345667777778888888888878888888877765321 1 124555667778888999999
Q ss_pred cchH-HHHHHHhhhhhhHHHHHHHHHHHHHHhcC
Q 039353 162 PFIG-DFVNLIGSFALIPITFVFPSMVFIKVKAN 194 (239)
Q Consensus 162 P~~~-~v~~liGa~~~~~l~fi~P~l~~l~~~~~ 194 (239)
|+.. ..++..| +.++.+.+++|++++++.||+
T Consensus 327 p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 327 PEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 9876 8999999 889999999999999998875
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.00 E-value=5.2e-08 Score=87.61 Aligned_cols=191 Identities=16% Similarity=0.166 Sum_probs=132.1
Q ss_pred hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhh--hhhhh---------cccccc
Q 039353 15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIP--IVGYW---------AYGSTA 82 (239)
Q Consensus 15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g--~~gYl---------~fG~~v 82 (239)
..++...+.++|+..+|| -|+++|++.+.+++.. |+.+|++..+..+..++|+..- +.|-+ .-|+++
T Consensus 180 ~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~-~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~ 258 (394)
T PF03222_consen 180 PSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP-KKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNV 258 (394)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCh
Confidence 356777889999999999 7999999999998553 3688898888888888887653 33311 112121
Q ss_pred cc--ccccCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 039353 83 SV--YLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAA 160 (239)
Q Consensus 83 ~~--~Il~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~ 160 (239)
++ ..+.+..++.+......+.-.+++.+||-=...-.+|.+++.++.+ ++ ...|.....+..+...++|..
T Consensus 259 ~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~-~~------~~~r~~~~~ltf~ppl~~a~~ 331 (394)
T PF03222_consen 259 SALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLK-NN------SSGRLKTWLLTFLPPLIFALL 331 (394)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cc------ccchHHHHHHHHHhHHHHHHH
Confidence 11 2333333345566777788888888888766677888888877752 21 123444455566677888999
Q ss_pred ccc-hHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCchh-H----HHHHHHHHHHHHHHH
Q 039353 161 FPF-IGDFVNLIGSFALIPITFVFPSMVFIKVKANTARV-K----KKAWHWFNILLFSLV 214 (239)
Q Consensus 161 vP~-~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~-~----~~~~~~~~ii~G~~~ 214 (239)
.|+ |...+++.| ...+.+..++|.++.++.|+++... + .+.....++++|++.
T Consensus 332 ~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~i 390 (394)
T PF03222_consen 332 FPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILI 390 (394)
T ss_pred CcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHH
Confidence 996 889999999 9999999999999999998754321 2 234444455555544
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.83 E-value=3.4e-07 Score=82.41 Aligned_cols=187 Identities=14% Similarity=0.087 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccc-----cc-----ccccC
Q 039353 21 ALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTA-----SV-----YLPEQ 89 (239)
Q Consensus 21 ~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v-----~~-----~Il~n 89 (239)
...++|++.+|| -|+++|++.+.+++.. ++.+|++..+..+..++|+.-=......-+.+. ++ +++..
T Consensus 183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~~-~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~ 261 (403)
T PRK15132 183 ALSAIPVIFTSFGFHGSVPSIVSYMGGNI-RKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQA 261 (403)
T ss_pred HHHHHHHHHHHhhCCcccHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHH
Confidence 788999999999 7999999999987654 368899999999998888865544444333221 11 22332
Q ss_pred cc---cChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccc-hH
Q 039353 90 MS---CVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPF-IG 165 (239)
Q Consensus 90 ~~---~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~-~~ 165 (239)
+. +..+...+....-.+++.+||-=......|.+.+.++.+++. ..|.....+..+...++|+..|+ |.
T Consensus 262 l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~~-------~~r~~~~~l~flppli~a~~~P~~F~ 334 (403)
T PRK15132 262 LREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNTV-------GGRLQTGLITFLPPLAFALFYPRGFV 334 (403)
T ss_pred HHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccc-------cCCchhehhhHHHHHHHHHHhHHHHH
Confidence 22 234556666676677778887666677788888877643211 12555566778888899999997 77
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhcCC-chhH----HHHHHHHHHHHHHHHHH
Q 039353 166 DFVNLIGSFALIPITFVFPSMVFIKVKANT-ARVK----KKAWHWFNILLFSLVTV 216 (239)
Q Consensus 166 ~v~~liGa~~~~~l~fi~P~l~~l~~~~~~-~~~~----~~~~~~~~ii~G~~~~v 216 (239)
..+++.|. ..+.+.+++|+++-++.++++ ..++ .+..+++.+++|++..+
T Consensus 335 ~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~ 389 (403)
T PRK15132 335 MALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIG 389 (403)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHH
Confidence 88898885 579999999999999998754 2222 35667777777776654
No 12
>PRK10483 tryptophan permease; Provisional
Probab=98.70 E-value=9.7e-07 Score=79.53 Aligned_cols=188 Identities=11% Similarity=0.006 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcc-----------cccccccc
Q 039353 19 FNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAY-----------GSTASVYL 86 (239)
Q Consensus 19 ~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~f-----------G~~v~~~I 86 (239)
.....++|++.+|| -|+++|++.+.+++..+ +.++++..+..+..++|+.-=......- |++++ ..
T Consensus 192 ~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~-kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~-~L 269 (414)
T PRK10483 192 PYLLMTLPFCLASFGYHGNVPSLMKYYGKDPK-TIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID-VL 269 (414)
T ss_pred HHHHHHHHHHHhhccCCCcchHHHHHhCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH-HH
Confidence 34778999999999 79999999999876544 7889999999999999987332222222 22221 11
Q ss_pred ccCcc---cChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccc
Q 039353 87 PEQMS---CVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPF 163 (239)
Q Consensus 87 l~n~~---~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~ 163 (239)
+..+. ++.+...+..+...+++..||-=......|.+.+.++.+++. + .|...-.+..+-..++|...|+
T Consensus 270 ~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~~----~---~r~~~~~ltflPPl~~al~~P~ 342 (414)
T PRK10483 270 VQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSA----M---GRFKTALLTFLPPVVGGLLFPN 342 (414)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc----c---cceeeehhhHhhHHHHHHHhHH
Confidence 12221 233455666677777788888666677788888887753221 1 2444455677888899999997
Q ss_pred -hHHHHHHHhhhhhhHHHHHHHHHHHHHHhcC-CchhHH----HHHHHHHHHHHHHHHH
Q 039353 164 -IGDFVNLIGSFALIPITFVFPSMVFIKVKAN-TARVKK----KAWHWFNILLFSLVTV 216 (239)
Q Consensus 164 -~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~-~~~~~~----~~~~~~~ii~G~~~~v 216 (239)
|=.-++..|.. ++.+.-++|.++-++.||+ +...++ +....+.+++|+...+
T Consensus 343 ~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~~~i~ 400 (414)
T PRK10483 343 GFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGVGNAL 400 (414)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHHHHHH
Confidence 88899999965 7888899999999999975 322221 2333455555555443
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.53 E-value=8.3e-06 Score=73.53 Aligned_cols=187 Identities=12% Similarity=0.035 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHH--hhhhhhh---------hccccccccccc
Q 039353 20 NALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYY--GIPIVGY---------WAYGSTASVYLP 87 (239)
Q Consensus 20 ~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~--~~g~~gY---------l~fG~~v~~~Il 87 (239)
....++|++.+|| -|+++|++.+.+++..+ +.+|.+..+..+..++|+ ...+.|- ..-|+++++.+.
T Consensus 194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~-~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~ 272 (415)
T PRK09664 194 YIFMALPVCLASFGFHGNIPSLIICYGKRKD-KLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVK 272 (415)
T ss_pred HHHHHHHHHHHhhhCCCcchHHHHHhCccHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHH
Confidence 4677999999999 79999999999875543 466677766666666774 2223331 122333332111
Q ss_pred ---cCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccc-
Q 039353 88 ---EQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPF- 163 (239)
Q Consensus 88 ---~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~- 163 (239)
.+. +..+...+.++...+++..||-=......|.+.+.++.++++ ..|...-.+..+-..+.|...|+
T Consensus 273 s~~~~~-~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~~-------~~r~~~~~ltflPPl~~al~~P~g 344 (415)
T PRK09664 273 SFLGTK-QHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSH-------GGRFKTVLLTFLPPALLYLIFPNG 344 (415)
T ss_pred HHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-------ccceeeehhhHhhhHHHHHHhhHH
Confidence 122 234666677777777888888766677788888887754221 12444455667788899999997
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHhcC-CchhH----HHHHHHHHHHHHHHHHH
Q 039353 164 IGDFVNLIGSFALIPITFVFPSMVFIKVKAN-TARVK----KKAWHWFNILLFSLVTV 216 (239)
Q Consensus 164 ~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~-~~~~~----~~~~~~~~ii~G~~~~v 216 (239)
|=.-++..|.. ++.+.-++|+++-++.||+ ....+ .+..-.+.+++|++..+
T Consensus 345 Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~ 401 (415)
T PRK09664 345 FIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVIL 401 (415)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHH
Confidence 88899999985 7789999999999999975 22222 23455556666665544
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.50 E-value=1.2e-05 Score=72.92 Aligned_cols=198 Identities=10% Similarity=0.012 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHh-cccchHHHHhh----cc---Cch--hhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccc-----cc
Q 039353 20 NALGAISAAVVAN-APCLLPEMQST----LR---QPV--VKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTA-----SV 84 (239)
Q Consensus 20 ~~~~~~~~~~faf-~~~~~~~i~~~----m~---~p~--~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v-----~~ 84 (239)
....++|++.+|| -|+.+|++... .+ +++ .||.++++..+..+..++|+..-...-+.-+.+. ++
T Consensus 210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q 289 (443)
T PRK13629 210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ 289 (443)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 4678899999999 68999998887 43 223 5678899999999999998877766666655422 12
Q ss_pred --cccc----Cccc---C-----hHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccc----cccCCCcchhhHHHHHH
Q 039353 85 --YLPE----QMSC---V-----KWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLK----LEESTFSRENIKRRFFL 146 (239)
Q Consensus 85 --~Il~----n~~~---~-----~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~----~~~~~~~~~~~~~r~~~ 146 (239)
+++. .+++ . .+...+..+.-.+++..||-=.....+|.++....+ .++++ ...+..+...
T Consensus 290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~--~~~~~~~~~~ 367 (443)
T PRK13629 290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTK--VSLGKLNTIS 367 (443)
T ss_pred CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--cCHHHHHHHH
Confidence 2222 2232 1 234455555566677777765556777777776631 12222 2445566677
Q ss_pred HHHHHHHHHHHHHHccchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 039353 147 RGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTV 220 (239)
Q Consensus 147 r~~~~~~~~~iA~~vP~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~ii~G~~~~v~gt~ 220 (239)
.+++.+.++.+|+.=|++=+++.-+|+-..+.+.|++|...-.|.-.-++.+ .+..|+++++.|++....-.|
T Consensus 368 ~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 368 MIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999988888889999999998876654322211 124578888888877554333
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.47 E-value=2.8e-06 Score=76.55 Aligned_cols=191 Identities=11% Similarity=0.039 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHHHHHh-cccchHHHH----hhccCch--hhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccc-----cc
Q 039353 17 KVFNALGAISAAVVAN-APCLLPEMQ----STLRQPV--VKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTA-----SV 84 (239)
Q Consensus 17 ~~~~~~~~~~~~~faf-~~~~~~~i~----~~m~~p~--~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v-----~~ 84 (239)
.+.+...+++...+|| +|+++|++. +|.+||+ .||.+|++..+..+..++|+..-...-+..+.+. ++
T Consensus 184 ~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~ 263 (397)
T TIGR00814 184 FLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQ 263 (397)
T ss_pred hHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHc
Confidence 3566889999999999 999999987 3344333 5578889999999999888877766666665432 12
Q ss_pred c--ccc----CcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcc-c--cccCCCcchhhHHHHHHHHHHHHHHH
Q 039353 85 Y--LPE----QMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFL-K--LEESTFSRENIKRRFFLRGFLFAFNI 155 (239)
Q Consensus 85 ~--Il~----n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~-~--~~~~~~~~~~~~~r~~~r~~~~~~~~ 155 (239)
+ ++. ..+ ..+...+..+.-.+++..|+-=....++|.+++.+. . .++++ .+.+........++.+.++
T Consensus 264 nis~Ls~l~~~~~-~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~w 340 (397)
T TIGR00814 264 NISILSYLANHFN-AAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKK--INIRKLNRAIAIFIVLTTW 340 (397)
T ss_pred CcHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccc--cCHHHHHHHHHHHHHHHHH
Confidence 2 122 122 234455555666667777777666777888888762 1 11111 2344455666778889999
Q ss_pred HHHHHccchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHH
Q 039353 156 FVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKK-KAWHWFNILLFS 212 (239)
Q Consensus 156 ~iA~~vP~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~-~~~~~~~ii~G~ 212 (239)
.+|+.=|++=+++.-+|+-..+.+.|++|...-.|.-.-+ ++| ++.++++++.|+
T Consensus 341 ~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~--~~~~~~~~~fv~~~g~ 396 (397)
T TIGR00814 341 IVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALK--KYRGRISNVFVTVIGL 396 (397)
T ss_pred HHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHH--HhCCCcchheeEeeec
Confidence 9999999999999977778889999999998776654322 222 134666665554
No 16
>PRK11021 putative transporter; Provisional
Probab=98.26 E-value=0.00032 Score=63.36 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhh
Q 039353 16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIV 73 (239)
Q Consensus 16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~ 73 (239)
.++.++..++....|+| |.......-+|+|||+| +.+|.+..+...+.++|++....
T Consensus 174 ~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k-~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 174 IEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPER-DFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred ccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999 99999999999999986 89999999999999999987654
No 17
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.18 E-value=0.00033 Score=63.96 Aligned_cols=61 Identities=7% Similarity=-0.077 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039353 17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAY 78 (239)
Q Consensus 17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~f 78 (239)
++..+..++....|+| |-......-+|+|||+| +.+|++..+..++.++|++....-...-
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r-~iPrai~~s~~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 189 TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR-NVPIATIGGVLIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccc-chhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4556667788899999 99999999999999986 7999999999999999998876644333
No 18
>PRK10746 putative transport protein YifK; Provisional
Probab=98.15 E-value=0.00063 Score=62.56 Aligned_cols=174 Identities=11% Similarity=0.029 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccc-c---cccc---
Q 039353 16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTA-S---VYLP--- 87 (239)
Q Consensus 16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v-~---~~Il--- 87 (239)
+++.++..++....|+| |-........|+|||+| +.+|++..++....++|+......-...+.+. + ++..
T Consensus 197 ~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~ 275 (461)
T PRK10746 197 GGWKGFLTALCIVVASYQGVELIGITAGEAKNPQV-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTF 275 (461)
T ss_pred ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHH
Confidence 45677889999999999 99999999999999986 89999988888888888876444333333221 1 1111
Q ss_pred cCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc-------ccCCCcchhhHHHHH-HHHHHHHHHHHHHH
Q 039353 88 EQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL-------EESTFSRENIKRRFF-LRGFLFAFNIFVAA 159 (239)
Q Consensus 88 ~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~-------~~~~~~~~~~~~r~~-~r~~~~~~~~~iA~ 159 (239)
.+... .....+.+....+..+.+.--.....-+.+...-+++ +.++ ++.+.+-+ +.....++...+..
T Consensus 276 ~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~---~g~P~~al~~~~~~~~l~~~~~~ 351 (461)
T PRK10746 276 AKIGI-TAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSR---HGVPVAGVAVSILILLVGSCLNY 351 (461)
T ss_pred HHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCC---CCCcHHHHHHHHHHHHHHHHHHH
Confidence 11111 1122333444444444433323333333333332210 1111 12222222 22222222333444
Q ss_pred HccchHHHHHHHhhhhh--hHHHHHHHHHHHHHHhcC
Q 039353 160 AFPFIGDFVNLIGSFAL--IPITFVFPSMVFIKVKAN 194 (239)
Q Consensus 160 ~vP~~~~v~~liGa~~~--~~l~fi~P~l~~l~~~~~ 194 (239)
..|+-+.+++.+-+.++ ..+.++++++.+++++|+
T Consensus 352 ~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 352 IIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666665543333 478999999999999874
No 19
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.10 E-value=0.00027 Score=65.10 Aligned_cols=52 Identities=8% Similarity=-0.038 Sum_probs=42.8
Q ss_pred HHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 039353 27 AAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYG 79 (239)
Q Consensus 27 ~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG 79 (239)
...|+| |-.......+|+|||+| +.+|++..+...+.++|+.....-...-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDK-NYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 457899 99999989999999986 89999999999999999876655444444
No 20
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.08 E-value=0.00037 Score=63.79 Aligned_cols=172 Identities=10% Similarity=0.067 Sum_probs=96.7
Q ss_pred hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccc-cc-------c
Q 039353 15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTA-SV-------Y 85 (239)
Q Consensus 15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v-~~-------~ 85 (239)
++.+.++..++....|+| |-........|+|||+| +.+|++..+...+.++|+.....--..-..+. +. .
T Consensus 177 p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r-~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~ 255 (446)
T PRK10197 177 PNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEK-HIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRS 255 (446)
T ss_pred cccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHH
Confidence 345668899999999999 99999999999999986 79999988999899999886554332222211 10 1
Q ss_pred cccCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc-------ccCCCcchhhHHHHHHHH-HHHHHHHHH
Q 039353 86 LPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL-------EESTFSRENIKRRFFLRG-FLFAFNIFV 157 (239)
Q Consensus 86 Il~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~-------~~~~~~~~~~~~r~~~r~-~~~~~~~~i 157 (239)
..++... .+...+.++...+..+.+..-.....-+.+...-++. +.++ ++.+.+-++-. ++.++..+.
T Consensus 256 ~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~---~~~P~~Ail~~~~~~~l~~l~ 331 (446)
T PRK10197 256 VLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINR---SKTPYVAVLLSTGAAFLTVVV 331 (446)
T ss_pred HHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCc---CCCcHHHHHHHHHHHHHHHHH
Confidence 1222221 2334444444444444444333333333333322210 1111 12223322222 222222222
Q ss_pred HHHcc--chHHHHHHHhhhhhhHHHHHHHHHHHHHHhc
Q 039353 158 AAAFP--FIGDFVNLIGSFALIPITFVFPSMVFIKVKA 193 (239)
Q Consensus 158 A~~vP--~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~ 193 (239)
....| .++.++++.+... .+.|.++++.+++++|
T Consensus 332 ~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 332 NYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred HhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 22223 3667777666444 3888999999888876
No 21
>PRK10655 potE putrescine transporter; Provisional
Probab=98.08 E-value=0.00068 Score=61.73 Aligned_cols=58 Identities=12% Similarity=-0.102 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039353 18 VFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYW 76 (239)
Q Consensus 18 ~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl 76 (239)
+.++..++....|+| |-......-+|+|||+| +.+|++..+...+.++|++.......
T Consensus 188 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r-~iPrAi~~~~~~~~~~Y~l~~~~~~~ 246 (438)
T PRK10655 188 FSAVGSSIAMTLWAFLGLESACANSDAVENPER-NVPIAVLGGTLGAAVIYIVSTNVIAG 246 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccc-cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777788899999 99999999999999986 89999999999999999987654443
No 22
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.05 E-value=0.00054 Score=63.08 Aligned_cols=62 Identities=15% Similarity=0.067 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 039353 17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYG 79 (239)
Q Consensus 17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG 79 (239)
+..++..++....|+| |-......-+|+|||+| +.++++..+...+.++|+......-...+
T Consensus 204 g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 204 GGLPILMTMVAVNFAFSGTELIGIAAGETENPAK-VIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 4556778888899999 99999999999999986 79999999999889999887654433333
No 23
>PRK15049 L-asparagine permease; Provisional
Probab=97.93 E-value=0.0015 Score=60.64 Aligned_cols=172 Identities=13% Similarity=0.114 Sum_probs=93.6
Q ss_pred hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccc-cc---ccc---
Q 039353 15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGST-AS---VYL--- 86 (239)
Q Consensus 15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~-v~---~~I--- 86 (239)
++.+..++.++....|+| |-......-.|+|||+| +.+|++..++....++|+..........+.+ .+ ++.
T Consensus 216 p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r-~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~ 294 (499)
T PRK15049 216 PHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQT-MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTF 294 (499)
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHH
Confidence 345566677778899999 99999999999999986 7999999888888888887665444443321 11 111
Q ss_pred ccCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc-------ccCCCcchhhHHHHHH-HHHHHHHHHHHH
Q 039353 87 PEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL-------EESTFSRENIKRRFFL-RGFLFAFNIFVA 158 (239)
Q Consensus 87 l~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~-------~~~~~~~~~~~~r~~~-r~~~~~~~~~iA 158 (239)
.+... ..+...+.++...+..+.+.--.....-+.+...-++. +.++ ++.+.+-++ ..++.++..++.
T Consensus 295 ~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~k---~~~P~~Ail~~~~i~~l~~~l~ 370 (499)
T PRK15049 295 FSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSR---QHVPYAGILATLVVYVVGVFLN 370 (499)
T ss_pred HHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHH
Confidence 11111 12233444444444444443222233333333322110 1111 122233222 222222222222
Q ss_pred HHccc--hHHHHHHHhhhhhhHHHHHHHHHHHHHHhc
Q 039353 159 AAFPF--IGDFVNLIGSFALIPITFVFPSMVFIKVKA 193 (239)
Q Consensus 159 ~~vP~--~~~v~~liGa~~~~~l~fi~P~l~~l~~~~ 193 (239)
...|. ++.++++. ..+..+.|++|++.+++++|
T Consensus 371 ~~~~~~~f~~l~~~~--~~~~li~y~~~~~~~l~~R~ 405 (499)
T PRK15049 371 YLVPSRVFEIVLNFA--SLGIIASWAFIIVCQMRLRK 405 (499)
T ss_pred hcChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 23332 44455543 35567899999999998875
No 24
>PRK10249 phenylalanine transporter; Provisional
Probab=97.92 E-value=0.0034 Score=57.69 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhh
Q 039353 16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVG 74 (239)
Q Consensus 16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~g 74 (239)
+++.++..++....|+| |-.......+|+|||+| +.+|++..+.....++|+.....-
T Consensus 206 ~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k-~iPrai~~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 206 TGWNGLILSLAVIMFSFGGLELIGITAAEARDPEK-SIPKAVNQVVYRILLFYIGSLVVL 264 (458)
T ss_pred CcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999 99999999999999986 799999999998899997754433
No 25
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.91 E-value=0.00026 Score=64.63 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhh
Q 039353 18 VFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVG 74 (239)
Q Consensus 18 ~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~g 74 (239)
+.++..++....|+| |-.......+|+|||+| +.+|++..++.++.++|++.....
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r-~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEIKNPGK-TMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 566778889999999 99999999999999986 899999999999999998876543
No 26
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.89 E-value=0.0024 Score=58.56 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhh
Q 039353 16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGI 70 (239)
Q Consensus 16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~ 70 (239)
+.+.++..+++...|+| |-.......+|+|||+| +.+|++..+.....+.|+..
T Consensus 197 ~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r-~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 197 HGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQ-SIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred ccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhh-HHHHHHHHHHHHHHHHHHHH
Confidence 44566778888899999 99999999999999986 79999887777777777654
No 27
>TIGR00909 2A0306 amino acid transporter.
Probab=97.87 E-value=0.00025 Score=64.28 Aligned_cols=170 Identities=11% Similarity=-0.004 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccc--cccc-----cc
Q 039353 16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGST--ASVY-----LP 87 (239)
Q Consensus 16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~--v~~~-----Il 87 (239)
.+..++..++....++| |........+|+|||+| +.+|++..+..+..++|+..........+.+ .+++ +.
T Consensus 192 ~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r-~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (429)
T TIGR00909 192 MGFGGVGAATALVFFAFIGFEAISTAAEEVKNPER-DIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVG 270 (429)
T ss_pred CcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccc-cccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHH
Confidence 34567788899999999 99999999999999975 7899999999999999998875544332211 0110 11
Q ss_pred cCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc--ccCCC---c-chhhHHHHHHHHHHHHHHHHHHHHc
Q 039353 88 EQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL--EESTF---S-RENIKRRFFLRGFLFAFNIFVAAAF 161 (239)
Q Consensus 88 ~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~--~~~~~---~-~~~~~~r~~~r~~~~~~~~~iA~~v 161 (239)
.+.. .++...+..+...+..+.+.--.....-+.+...-+++ | +.+ + +.+.+.+-..-.. +++. +....
T Consensus 271 ~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP-~~~~~~~~~~~~P~~a~~~~~--~i~~-~~~~~ 345 (429)
T TIGR00909 271 YDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLP-GSLSKVHPKTGTPHMSIIIFS--LTAA-LLASL 345 (429)
T ss_pred HHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-HHHHHcCCCCCCcHHHHHHHH--HHHH-HHHHH
Confidence 1111 23444445555555555554433333333333322210 0 000 0 0122222111111 1111 11234
Q ss_pred cchHHHHHHHhhhhhhHHHHHHHHHHHHHHhc
Q 039353 162 PFIGDFVNLIGSFALIPITFVFPSMVFIKVKA 193 (239)
Q Consensus 162 P~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~ 193 (239)
.+++.+.++.+ .+..+.|++.++..+++++
T Consensus 346 ~~~~~l~~~~~--~~~~~~y~~~~~a~~~lr~ 375 (429)
T TIGR00909 346 VPLEGLAELTS--IGTLIAFAAVNVAVIILRR 375 (429)
T ss_pred cCHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 56777776543 3345777777777777654
No 28
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.87 E-value=0.0018 Score=59.53 Aligned_cols=169 Identities=11% Similarity=0.056 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccc----ccc----ccc
Q 039353 18 VFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTA----SVY----LPE 88 (239)
Q Consensus 18 ~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v----~~~----Il~ 88 (239)
+.++..++....|+| |......+.+|.||+ |+.+|.+..+...+..+|.......+...+++. +++ +.+
T Consensus 194 ~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~--k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~ 271 (468)
T TIGR03810 194 MTQVKNMMLVTVWVFIGIEGASMLSARAEKR--SDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLE 271 (468)
T ss_pred HHHHHHHHHHHHHHHHhHhHHhhhHhhccCc--ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHH
Confidence 445667888999999 988888888899883 489999999999999999998877665544211 111 111
Q ss_pred CcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccc----c---ccCCCcchhhHHHHHHHHHHHHHHHHHHHHc
Q 039353 89 QMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLK----L---EESTFSRENIKRRFFLRGFLFAFNIFVAAAF 161 (239)
Q Consensus 89 n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~----~---~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~v 161 (239)
+.- ..|...+..+...++.+.+.--.....-+.....-++ + +.++ ++.+.+-+.-...+.....+....
T Consensus 272 ~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~~---~~tP~~al~~~~~i~~~~~l~~~~ 347 (468)
T TIGR03810 272 HMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKENA---NGAPTNALWLTNGLIQIFLLTTLF 347 (468)
T ss_pred HHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHHc
Confidence 211 1333444455555555444433332222222222111 0 1111 122233222211111111111112
Q ss_pred --cchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcC
Q 039353 162 --PFIGDFVNLIGSFALIPITFVFPSMVFIKVKAN 194 (239)
Q Consensus 162 --P~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~ 194 (239)
+.++.+.++.+ ....+.|.++++.+++++++
T Consensus 348 ~~~~~~~l~~~~~--~~~li~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 348 SEQAYNFAISLAT--SAILVPYLWSAAYQVKLSWR 380 (468)
T ss_pred cHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 34555666433 34568999999999988754
No 29
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.85 E-value=0.0032 Score=57.98 Aligned_cols=59 Identities=17% Similarity=0.114 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhh
Q 039353 16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGY 75 (239)
Q Consensus 16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gY 75 (239)
+.+.++..++....|+| |-......-+|+|||+| +.+|++..+.....+.|+.....-+
T Consensus 208 ~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r-~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 208 KGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEK-SLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred ccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 45667889999999999 99999999999999986 7999987777777777876654443
No 30
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.83 E-value=0.0032 Score=57.40 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhh
Q 039353 16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPI 72 (239)
Q Consensus 16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~ 72 (239)
..+.++..++....|+| |.......-+|+|||+| +.+|++..+..++..+|+..-.
T Consensus 188 ~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r-~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 188 GAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR-DIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccCHHHHHHHHHHHHHHHHHHH
Confidence 34567788888899999 99999999999999986 7999999998888888876643
No 31
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.81 E-value=0.0033 Score=57.92 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhh
Q 039353 18 VFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIV 73 (239)
Q Consensus 18 ~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~ 73 (239)
+.++..++....|+| |-.......+|+|||+| +.+|++..+...+.++|+.....
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r-~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPRK-SIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhcChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888899999999 99999999999999986 79999999999999999986543
No 32
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.81 E-value=0.008 Score=54.78 Aligned_cols=63 Identities=10% Similarity=-0.014 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 039353 16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYG 79 (239)
Q Consensus 16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG 79 (239)
.++.++..++....|+| |-.......+|+|||+| +.+|++..+...+.++|+..........+
T Consensus 184 ~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r-~iPrAi~~~~~iv~ilYil~~~~~~~~~p 247 (435)
T PRK10435 184 TDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKR-TVPLATMLGTGLAGIIYIAATQVISGMFP 247 (435)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35678889999999999 99999999999999976 79999999999999999988766554443
No 33
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.78 E-value=0.0068 Score=55.61 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhh
Q 039353 16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIV 73 (239)
Q Consensus 16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~ 73 (239)
+++.++..++....|+| |........+|+|||+| +.++++..+.....++|......
T Consensus 196 ~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k-~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 196 NGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEK-SIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred cchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888899999999 99999999999999986 78998888877777778766433
No 34
>PRK10836 lysine transporter; Provisional
Probab=97.78 E-value=0.0033 Score=58.22 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039353 17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAY 78 (239)
Q Consensus 17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~f 78 (239)
.+..+........|+| |-......-.|+|||+| +.+|++..++..+.++|+.....-....
T Consensus 203 g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 203 GFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAK-NIPRAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred cHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 3455555666677999 99999999999999986 8999999999999999998765444333
No 35
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.73 E-value=0.0044 Score=56.69 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhh
Q 039353 16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGY 75 (239)
Q Consensus 16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gY 75 (239)
+++.++..++....|+| |........+|+|||+| +.+|++..+......+|+.......
T Consensus 198 ~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r-~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 198 NGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIK-SITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred ccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 45567889999999999 99999999999999986 7999988888888888887644433
No 36
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.73 E-value=0.0079 Score=55.45 Aligned_cols=60 Identities=8% Similarity=-0.036 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039353 17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAY 78 (239)
Q Consensus 17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~f 78 (239)
.+..+..++....|+| |-.......+|+|| + |+.+|.+..+..++.++|+..........
T Consensus 197 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~-r~iPrai~~~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 197 VFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K-SDVGKATVLGTLGALVIYILITLLSLGVL 257 (473)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4566778888999999 99999999999999 4 48999999999999999998876544433
No 37
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.65 E-value=0.0033 Score=56.81 Aligned_cols=168 Identities=13% Similarity=0.132 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccc---cccc-------c
Q 039353 20 NALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTAS---VYLP-------E 88 (239)
Q Consensus 20 ~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~---~~Il-------~ 88 (239)
..+.+++...|+| |........+|+|| |+.+|.+..+...+.++|......-....+++.. ++.. +
T Consensus 189 ~~~~~~~~~~~~~~G~e~~~~~~~E~k~---k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (426)
T PF13520_consen 189 GFLAGFSVAFFAFSGFEAIASLAEENKN---KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLAS 265 (426)
T ss_dssp HHHHHHHHHGGGGTTTTHHHHGGGGSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHH
T ss_pred chhhHHHHHHhhcccccccccccccccc---hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhc
Confidence 4678889999999 99999999999887 3699999999999999999987666666554321 1211 1
Q ss_pred CcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc--ccCCCc---chhhHHHHHHHHHHHHHHHHHHH-Hcc
Q 039353 89 QMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL--EESTFS---RENIKRRFFLRGFLFAFNIFVAA-AFP 162 (239)
Q Consensus 89 n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~--~~~~~~---~~~~~~r~~~r~~~~~~~~~iA~-~vP 162 (239)
... ..+...+..++..+..+.+..-......+.+...-+++ | +.++ +++.+.+-..-...+.....+.. ..|
T Consensus 266 ~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP-~~~~~~~k~~~P~~a~~~~~~i~~i~~~~~~~~~ 343 (426)
T PF13520_consen 266 AVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLP-KWFAKVNKFGTPYNAIILVAVISSILLLLFLFIP 343 (426)
T ss_dssp HHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-GGGGTTSSSSSCHHHHHHHHHHHHHHHHHTTTSS
T ss_pred ccc-ccccccccccccccccccccchhhcchhhcccccccccchh-hhhhhccccCCceeeehhhhHHHHHHHHHHHhhh
Confidence 111 12344444455555555555444444444444433221 1 1111 11222332222222221111112 234
Q ss_pred --chHHHHHHHhhhhhhHHHHHHHHHHHHHHhcC
Q 039353 163 --FIGDFVNLIGSFALIPITFVFPSMVFIKVKAN 194 (239)
Q Consensus 163 --~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~ 194 (239)
+++.+.++ +.....+.++++.+.+++.+++
T Consensus 344 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~ 375 (426)
T PF13520_consen 344 QSSFDILVSL--SSVGYLISYILVILAVLFLRRK 375 (426)
T ss_dssp SSHHHHHHHH--HHHHTHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 45555553 3344567777777777776654
No 38
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.64 E-value=0.0061 Score=56.23 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 039353 20 NALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYG 79 (239)
Q Consensus 20 ~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG 79 (239)
....++....|+| |-......-+|+|||+| +.+|++..+..++.+++....+.-+...+
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhcCChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4555566678999 99999999999999976 79999998888776655444433333334
No 39
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.58 E-value=0.0017 Score=61.15 Aligned_cols=171 Identities=7% Similarity=-0.012 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccc---ccccc---cc
Q 039353 16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGST---ASVYL---PE 88 (239)
Q Consensus 16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~---v~~~I---l~ 88 (239)
.++.+++.+.....|+| |-........|+|||+| +.++.+..++.++.++|.+....-...-+.+ .++.+ ..
T Consensus 228 ~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~ 306 (557)
T TIGR00906 228 YGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFE 306 (557)
T ss_pred cchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHH
Confidence 45667888999999999 99999999999999986 7999999999999999998765543333221 11111 11
Q ss_pred CcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc--cc--CCCcch-hhHHHHHHHHHHHHHHHHHHHHccc
Q 039353 89 QMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL--EE--STFSRE-NIKRRFFLRGFLFAFNIFVAAAFPF 163 (239)
Q Consensus 89 n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~--~~--~~~~~~-~~~~r~~~r~~~~~~~~~iA~~vP~ 163 (239)
... .+|...+..+........+..-.....-+.+...-++. |+ ++.+++ +.+.+-.+ +..+++.+++.. .+
T Consensus 307 ~~g-~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail--~~~iv~~il~~~-~~ 382 (557)
T TIGR00906 307 YVG-WGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATV--VSGAIAALMAFL-FD 382 (557)
T ss_pred HcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHH--HHHHHHHHHHHH-cC
Confidence 111 23444444444444443333323333333333322210 00 000001 12222221 112222333333 35
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHhc
Q 039353 164 IGDFVNLIGSFALIPITFVFPSMVFIKVKA 193 (239)
Q Consensus 164 ~~~v~~liGa~~~~~l~fi~P~l~~l~~~~ 193 (239)
++.+.++.. .+..+.|.++++..+.+++
T Consensus 383 ~~~l~~l~s--ig~ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 383 LKALVDLLS--IGTLLAYSLVAACVLILRY 410 (557)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 666666542 3456889999888877774
No 40
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=97.55 E-value=0.031 Score=51.57 Aligned_cols=61 Identities=11% Similarity=-0.111 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 039353 18 VFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYG 79 (239)
Q Consensus 18 ~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG 79 (239)
...+..+.....|+| |-.....+-+|+|||+| +.+|.+..+..+..++|..+-+......+
T Consensus 212 ~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 212 YGAFLVSGLMAAYVMVGFGSAGELSEETKNPRR-VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHhcCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 344556666788999 99999999999999986 89999999998887766655544443334
No 41
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.51 E-value=0.0065 Score=55.63 Aligned_cols=173 Identities=10% Similarity=0.039 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCc----
Q 039353 16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQM---- 90 (239)
Q Consensus 16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~---- 90 (239)
.+..++..++-.-.||| |-...=.+-.|+|||.| .+++++..++.+++++|+.+-+..+-+-.. ++++.+-
T Consensus 201 ~~~g~i~lafysglfa~~GWd~lN~vteEiknP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vls~---~e~l~S~aVav 276 (479)
T KOG1287|consen 201 TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVLSP---DEILSSDAVAV 276 (479)
T ss_pred CchHHHHHHHHHhhhcccCchhhccchHhhcCccc-cchHHHHHhhHHHHHHHHHhHhheeEecCH---HHhcccchHHH
Confidence 34556778888889999 88877778999999976 899999999999999999987665544322 2222221
Q ss_pred --c---cChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCC----c---chhhHHHHHHHHHHHHHHHHHH
Q 039353 91 --S---CVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTF----S---RENIKRRFFLRGFLFAFNIFVA 158 (239)
Q Consensus 91 --~---~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~----~---~~~~~~r~~~r~~~~~~~~~iA 158 (239)
. -+++. .+.-++..++.+.+.--.++..-+.+...-++ ++. + .+....+. .+........+.
T Consensus 277 ~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~are---G~LP~~~s~i~~~~~TP~~--allf~~~~~i~~ 350 (479)
T KOG1287|consen 277 TFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGARE---GHLPAFFSMISVRRFTPRP--ALLFSGLLSIVL 350 (479)
T ss_pred HHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHc---cCccHHHHhhcCCCCCChH--HHHHHHHHHHHH
Confidence 1 01222 23333344444443322222221222221111 111 0 01100111 122233333444
Q ss_pred HHccchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCchh
Q 039353 159 AAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARV 198 (239)
Q Consensus 159 ~~vP~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~ 198 (239)
..+.|++.+++.++=.......+.+=+++++|.++++.++
T Consensus 351 ~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~r 390 (479)
T KOG1287|consen 351 SLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPR 390 (479)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 5666899999999988888889999999999998876443
No 42
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.45 E-value=0.01 Score=55.24 Aligned_cols=49 Identities=12% Similarity=-0.048 Sum_probs=40.5
Q ss_pred HHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhh
Q 039353 22 LGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIP 71 (239)
Q Consensus 22 ~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g 71 (239)
...+....|+| |-......-+|+|||+| +++|++..++..+.++|....
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~knP~r-~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINELENPGR-DYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHccCCcc-cccHHHHHHHHHHHHHHHHHH
Confidence 34445568899 99999999999999986 899999999888888887644
No 43
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.39 E-value=0.035 Score=51.48 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhh
Q 039353 20 NALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIV 73 (239)
Q Consensus 20 ~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~ 73 (239)
++..++....|+| |........+|+|||+| +.+|++..+...+..+|.+....
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~-~~p~ai~~~~~~~~~~y~l~~~~ 265 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPEK-NFPKGIIIAAIVISIGYSLAIFL 265 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCCCc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 4666777889999 99999999999999986 79999999999999999976443
No 44
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.34 E-value=0.025 Score=56.61 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhh
Q 039353 21 ALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIV 73 (239)
Q Consensus 21 ~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~ 73 (239)
+...++++..|| |.....++-.|+|||+| ..++.+..++.++.++|+++.+.
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP~r-~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDPQK-AIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888899 98888999999999986 79999999999999999998753
No 45
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.23 E-value=0.013 Score=54.35 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039353 17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAY 78 (239)
Q Consensus 17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~f 78 (239)
+..++..++....|+| |-........|+|||+| +.+|++..+..++.++|++....-....
T Consensus 233 ~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r-~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 233 SAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR-TLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh-hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567788889999999 99999999999999976 7999999999999999999865443333
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.14 E-value=0.045 Score=49.78 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 039353 18 VFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGS 80 (239)
Q Consensus 18 ~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~ 80 (239)
...+..++....++| |-....+..+|+|||+| +.+|.+..++..+..+|+.....-....++
T Consensus 200 ~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r-~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 200 FGGILAAILLAFFAFTGFEAIATLAEEVKNPKR-TIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 446788889999999 99999999999999976 689999999999999999988877777775
No 47
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=96.27 E-value=0.078 Score=48.24 Aligned_cols=176 Identities=12% Similarity=0.142 Sum_probs=96.3
Q ss_pred chhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHH-----hhhhhhhhccccccccc--
Q 039353 14 KTDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYY-----GIPIVGYWAYGSTASVY-- 85 (239)
Q Consensus 14 ~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~-----~~g~~gYl~fG~~v~~~-- 85 (239)
-|+.+.+++.++-+.+||| |...+=.-..|-|||+| ..+|+++.-..=..++|. +..+.-+-.++++.++-
T Consensus 198 fP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k-~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~ 276 (462)
T COG1113 198 FPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEK-AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVT 276 (462)
T ss_pred CCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhh-HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHH
Confidence 4678899999999999999 99888888899999986 577766655554555554 45555555555533321
Q ss_pred cccCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc--c--cCCCcchh-hHHHHHHHHHHHHHHHHHHHH
Q 039353 86 LPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL--E--ESTFSREN-IKRRFFLRGFLFAFNIFVAAA 160 (239)
Q Consensus 86 Il~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~--~--~~~~~~~~-~~~r~~~r~~~~~~~~~iA~~ 160 (239)
+...++-+ +...+.|.-...+.+.+.---++..-+++..+-++. | -.+.++++ ...-+.+..+...+..++.+.
T Consensus 277 ~f~~iGi~-~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~ 355 (462)
T COG1113 277 VFSLIGIP-FAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYI 355 (462)
T ss_pred HHHHcCCc-ccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhh
Confidence 22222211 122222222222222222112233334444432211 0 00111122 223445677778888889999
Q ss_pred ccchHHHHHHHhhhhhh--HHHHHHHHHHHHHHhc
Q 039353 161 FPFIGDFVNLIGSFALI--PITFVFPSMVFIKVKA 193 (239)
Q Consensus 161 vP~~~~v~~liGa~~~~--~l~fi~P~l~~l~~~~ 193 (239)
.| +.++.++-+.++. .....+=.+.|+|++|
T Consensus 356 ~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 356 LP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99 4444444433333 3344455677888887
No 48
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=95.27 E-value=0.017 Score=53.20 Aligned_cols=63 Identities=13% Similarity=-0.006 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 039353 17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGS 80 (239)
Q Consensus 17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~ 80 (239)
++.++..++....++| |.......-.|.|||+| ..+|.+..++....++|+......-...+.
T Consensus 198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k-~IPra~~~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 198 GFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK-TIPRATLLSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred chhHHHHhhhhhhcccccccccccccccCCCchh-hhhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence 4788999999999999 99999999999999986 799999999999999999877665555554
No 49
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=94.98 E-value=1.1 Score=39.64 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=91.8
Q ss_pred hHHHHHHHH-HHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccc-------cc
Q 039353 17 KVFNALGAI-SAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVY-------LP 87 (239)
Q Consensus 17 ~~~~~~~~~-~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~-------Il 87 (239)
+..+...+. ....++| |.........+++||+ +.+|....+..++..+|...-...-..+|.+.-++ ..
T Consensus 176 g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~--~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~ 253 (359)
T TIGR00912 176 GLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKK--KIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELI 253 (359)
T ss_pred CcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChh--hhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHH
Confidence 344444444 3778889 7777777888898876 58899999999999999998888888888543221 11
Q ss_pred cCcccChHHHHH---HHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccch
Q 039353 88 EQMSCVKWVKVF---INSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFI 164 (239)
Q Consensus 88 ~n~~~~~~~~~~---~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~ 164 (239)
+..+-++..... .-.........+..+..+-..+.+.+.++.+ ++ +....-.+. +...++ ..|+-
T Consensus 254 ~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~--~~~~~~-~~~~~ 321 (359)
T TIGR00912 254 KLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKR---KY------SILILPVLM--VIFSIS-FFPDS 321 (359)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---Cc------chhHHHHHH--HHHHHH-Hccch
Confidence 222212222221 2223334445555566677778888877753 11 112111111 222222 34552
Q ss_pred HHHHHHHh---hhhhhHHHHHHHHHHHHHHh
Q 039353 165 GDFVNLIG---SFALIPITFVFPSMVFIKVK 192 (239)
Q Consensus 165 ~~v~~liG---a~~~~~l~fi~P~l~~l~~~ 192 (239)
..-..... ...+....+++|.++.+...
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~i~~ 352 (359)
T TIGR00912 322 SNQLFDYLEFLPIIAIVFFLLLPLILFIIVK 352 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22122222 13345677789998876654
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.49 E-value=0.3 Score=46.05 Aligned_cols=174 Identities=13% Similarity=0.059 Sum_probs=97.1
Q ss_pred hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcc-ccc--cccccccCc
Q 039353 15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAY-GST--ASVYLPEQM 90 (239)
Q Consensus 15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~f-G~~--v~~~Il~n~ 90 (239)
+..+.++..++-+..|+| |-..+-..-.|-|||+| ..++++..++..+..+|+...+.-=+.- -++ ..++....-
T Consensus 228 p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~s 306 (554)
T KOG1286|consen 228 PFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALAS 306 (554)
T ss_pred CCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCcccc
Confidence 345888899999999999 99999989999999986 8999999999999999998875433222 222 111111000
Q ss_pred c------c--ChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc---cc-CCCcchhhHHHHHHHHHHHHHHHHHH
Q 039353 91 S------C--VKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL---EE-STFSRENIKRRFFLRGFLFAFNIFVA 158 (239)
Q Consensus 91 ~------~--~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~---~~-~~~~~~~~~~r~~~r~~~~~~~~~iA 158 (239)
| . -.....+.++...+.+..+---.+++.-+.+..+-+.. +- .+.++++.+ +....+..++..+.+
T Consensus 307 pF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P--~~a~~v~~~~~~l~~ 384 (554)
T KOG1286|consen 307 PFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVP--LVAVLVSGLFGALAA 384 (554)
T ss_pred HHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCc--hhHHHHHHHHHHHHH
Confidence 0 0 01111244444444444444334455545544442221 00 000011211 222223333333444
Q ss_pred HHcc-----chHHHHHHHhhhhhhHHHHHHHHHHHHHHhc
Q 039353 159 AAFP-----FIGDFVNLIGSFALIPITFVFPSMVFIKVKA 193 (239)
Q Consensus 159 ~~vP-----~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~ 193 (239)
.... .++.++++.|- +..+++.+=++.|++.|+
T Consensus 385 ~~~~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 385 LNFSLGAATVFNWLVNLSSI--GTLFAWTLVALSHLRFRY 422 (554)
T ss_pred HHhccccchHHHHHHHHHhH--HHHHHHHHHHHHHeeeee
Confidence 4332 26888887774 355666666777777665
No 51
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.31 E-value=1.2 Score=41.46 Aligned_cols=67 Identities=6% Similarity=0.012 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccccc
Q 039353 17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASV 84 (239)
Q Consensus 17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~ 84 (239)
+-|.+..++-.-+..+ |-..-.++.+|-||+++ +-++.+..+..+..++-.++-+.-.+.-+++.++
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk-~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~ 317 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNASK-AAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDA 317 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcchhh-hccHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 4556666677777777 77888999999999987 6888888888888887777766666677754433
No 52
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=92.42 E-value=6.4 Score=36.90 Aligned_cols=176 Identities=14% Similarity=0.096 Sum_probs=92.8
Q ss_pred hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhh-hhhhhccccc-----------
Q 039353 15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIP-IVGYWAYGST----------- 81 (239)
Q Consensus 15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g-~~gYl~fG~~----------- 81 (239)
++++.++...+-+..|+| |..++---..|-+||+| ..+|++.-..-=..++|+..- ++|.+.=.++
T Consensus 230 ~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K-~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~ 308 (541)
T COG0833 230 AGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRK-SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGV 308 (541)
T ss_pred CcchHHHHHHHhhheeeeeceeeeeeeecccCCchh-hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCc
Confidence 567888999999999999 98887777899999976 688888777777777776443 2232222222
Q ss_pred cccccccCcccCh--HHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccccc----CCCcchhhHHHHHHHHHHHHHHH
Q 039353 82 ASVYLPEQMSCVK--WVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEE----STFSRENIKRRFFLRGFLFAFNI 155 (239)
Q Consensus 82 v~~~Il~n~~~~~--~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~----~~~~~~~~~~r~~~r~~~~~~~~ 155 (239)
.+++-...+.+.+ ....+.|....++++.+--=.++..-+++..+-++... ++.++++.+..-+..+.+..+..
T Consensus 309 ~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~la 388 (541)
T COG0833 309 AASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLA 388 (541)
T ss_pred cCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHH
Confidence 1112111111100 12233343333333333222334444555554332100 01112344444444444444444
Q ss_pred HHHHHccc---hHHHHHHHhhhhhhHHHHHHHHHHHHHHhc
Q 039353 156 FVAAAFPF---IGDFVNLIGSFALIPITFVFPSMVFIKVKA 193 (239)
Q Consensus 156 ~iA~~vP~---~~~v~~liGa~~~~~l~fi~P~l~~l~~~~ 193 (239)
+++..... ++-++++.|-. ..++-+.=++.|++.||
T Consensus 389 fl~~~~~~~~vf~wL~~isg~s--~~i~W~~I~~shirFR~ 427 (541)
T COG0833 389 FLNSSFKETTVFNWLLNISGLS--GFIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHhccCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 44443332 56677766633 34455555777888765
No 53
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=91.74 E-value=11 Score=34.75 Aligned_cols=159 Identities=13% Similarity=0.065 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHh-c-ccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccc-ccccccCcccC
Q 039353 17 KVFNALGAISAAVVAN-A-PCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTA-SVYLPEQMSCV 93 (239)
Q Consensus 17 ~~~~~~~~~~~~~faf-~-~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v-~~~Il~n~~~~ 93 (239)
+..++..+++...-.+ . -.......+-+|+|+.++.-.....+......+-+..|...-.+=|+.. ..++...+..
T Consensus 191 ~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~- 269 (442)
T COG1457 191 SPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG- 269 (442)
T ss_pred cchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc-
Confidence 3444455555444334 3 4566788888888873233345566666777778888888888888765 3333344431
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHH----HccchHHHHH
Q 039353 94 KWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAA----AFPFIGDFVN 169 (239)
Q Consensus 94 ~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~----~vP~~~~v~~ 169 (239)
+...+-+...++...+--.+.++..-.+.+...+ .++..|.+...+. +..++|+ +..+++.++.
T Consensus 270 --~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~--------l~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~ 337 (442)
T COG1457 270 --FGLPAILILVLGTVTTNANNLYSAGLSFANIIPK--------LSKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLL 337 (442)
T ss_pred --HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhh--------hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4555556667777777666777765555554432 1222333332222 3333344 3567888888
Q ss_pred HHhhhhhhHHHHHHHHHHH
Q 039353 170 LIGSFALIPITFVFPSMVF 188 (239)
Q Consensus 170 liGa~~~~~l~fi~P~l~~ 188 (239)
++|+.........+--.+.
T Consensus 338 ~i~~~i~P~~~I~iad~~~ 356 (442)
T COG1457 338 LLGYFIPPWGGVMIADYFI 356 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8887775555555544333
No 54
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=91.27 E-value=11 Score=33.98 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=24.7
Q ss_pred cchHHHHh-hccCchhhcHHHHHHHHH---HHHHHHHHhhhhhhhhc
Q 039353 35 CLLPEMQS-TLRQPVVKNMRKALYVQF---TVGLLFYYGIPIVGYWA 77 (239)
Q Consensus 35 ~~~~~i~~-~m~~p~~~~~~~~~~~s~---~~~~~~y~~~g~~gYl~ 77 (239)
.+.-.+.+ ++|||++ +.++.+..+. .....+|...+.+|-..
T Consensus 198 iiv~~i~~~g~~~~~~-~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~ 243 (378)
T TIGR00796 198 IVVNAIRSRGVTKPKK-ITKYTIKAGLIAAVLLAFIYLSLFYLGATS 243 (378)
T ss_pred HHHHHHHHhCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33344555 8999875 5666655555 34455566666666544
No 55
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=85.63 E-value=28 Score=31.75 Aligned_cols=57 Identities=11% Similarity=0.195 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcC
Q 039353 138 ENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKAN 194 (239)
Q Consensus 138 ~~~~~r~~~r~~~~~~~~~iA~~vP~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~ 194 (239)
+.+.+|...|....+.+.++.+..-+.+.++.+.+.+.+..+-+..+++..+...|+
T Consensus 322 ~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 322 PLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred chHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 356678888877666666665555599999999998888888888888877777664
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=78.92 E-value=52 Score=30.04 Aligned_cols=159 Identities=10% Similarity=0.041 Sum_probs=78.2
Q ss_pred hhhHHHHHHHHHHHHHHh-c-ccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhc----cccccccc--c
Q 039353 15 TDKVFNALGAISAAVVAN-A-PCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWA----YGSTASVY--L 86 (239)
Q Consensus 15 ~~~~~~~~~~~~~~~faf-~-~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~----fG~~v~~~--I 86 (239)
++..+.+..+++..+=.+ . ..+.+...+.+|+|+. -.+....++.........+|+.+-.. +|+...++ +
T Consensus 203 ~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~ 280 (442)
T TIGR00800 203 STGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKT--AIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDI 280 (442)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHH
Confidence 445666777777644333 3 5788999999998763 33345556666666666666666654 77654332 2
Q ss_pred ccCcccChHH--HH---HHHHHHHHHHhh-hhhhhhhcHHHHHHhhccccccCCCcchhhHHHH-HHHHHHHHHHHH--H
Q 039353 87 PEQMSCVKWV--KV---FINSSVFLQSMV-CQHVFISPIHETLDTKFLKLEESTFSRENIKRRF-FLRGFLFAFNIF--V 157 (239)
Q Consensus 87 l~n~~~~~~~--~~---~~~~~~~~~~~~-s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~-~~r~~~~~~~~~--i 157 (239)
+..+..+.+. .. ...++..+..+. ..-.+.++.-..+...+.+. .+ .+|. ++..++-..+.. +
T Consensus 281 ~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l~l~~l~~~~--~~------~~r~~~i~~ii~~~~~~~~~ 352 (442)
T TIGR00800 281 LARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSAGLDIAALLPKY--IK------IKRGSLICAIIALLICPWNL 352 (442)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhCcCc--cc------cchHHHHHHHHHHHhccHHH
Confidence 2333221111 11 111222232222 33444566655555554321 11 1231 111111111111 1
Q ss_pred HHHccchHHHHHHHhhhhhhHHHHHH
Q 039353 158 AAAFPFIGDFVNLIGSFALIPITFVF 183 (239)
Q Consensus 158 A~~vP~~~~v~~liGa~~~~~l~fi~ 183 (239)
.-+.+.+.++++++|..........+
T Consensus 353 ~~~~~~~~~FL~~lg~~~~P~~gI~l 378 (442)
T TIGR00800 353 YNSSSKFTTFLSSIGGFLSPIAGVMI 378 (442)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233566788888877766665554
No 57
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=74.41 E-value=39 Score=29.23 Aligned_cols=113 Identities=11% Similarity=0.115 Sum_probs=72.7
Q ss_pred hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccc-------
Q 039353 15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYL------- 86 (239)
Q Consensus 15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~I------- 86 (239)
+.+..+...+.-...+.| +.....-+...++||+ +..|....+..+..++|...-...-..||.+..++.
T Consensus 171 ~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~--~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~ 248 (320)
T PF03845_consen 171 ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK--KLKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLEL 248 (320)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHH
Confidence 456777888877777888 7777777888888876 467888889988888888888888888886432211
Q ss_pred ccCcccChHHHHH---HHHHHHHHHhhhhhhhhhcHHHHHHhhccc
Q 039353 87 PEQMSCVKWVKVF---INSSVFLQSMVCQHVFISPIHETLDTKFLK 129 (239)
Q Consensus 87 l~n~~~~~~~~~~---~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~ 129 (239)
.+..+-++....+ .-.........+..++.+-..+.+.+.++.
T Consensus 249 ~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~ 294 (320)
T PF03845_consen 249 ARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKL 294 (320)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1111111122221 122233444455566667777888887775
No 58
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=73.16 E-value=7.9 Score=32.37 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHccchHHHHHHH---------hhhhhhHHHHHHHHHHHHHHhcCC--ch---hHHHHHHHHHHHHHHHH
Q 039353 149 FLFAFNIFVAAAFPFIGDFVNLI---------GSFALIPITFVFPSMVFIKVKANT--AR---VKKKAWHWFNILLFSLV 214 (239)
Q Consensus 149 ~~~~~~~~iA~~vP~~~~v~~li---------Ga~~~~~l~fi~P~l~~l~~~~~~--~~---~~~~~~~~~~ii~G~~~ 214 (239)
...+.++++|..++.++-++... ||.++.-++++= |..+.+.+ .. .-.+|+.|+++++|+++
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 44556667777777777766654 777777777765 54444422 11 12468889999999999
Q ss_pred HHHHHHH--HHHHHHH
Q 039353 215 TVATTVA--AVRFVIK 228 (239)
Q Consensus 215 ~v~gt~~--si~~li~ 228 (239)
..-|++. .|+..-+
T Consensus 237 ~lr~~i~YikVrrm~~ 252 (262)
T KOG4812|consen 237 FLRGFINYIKVRRMEE 252 (262)
T ss_pred HHHHHHhHHHHhhHHH
Confidence 9888864 3444433
No 59
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=70.65 E-value=77 Score=28.11 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=12.4
Q ss_pred cccchHHHHhhccCchh
Q 039353 33 APCLLPEMQSTLRQPVV 49 (239)
Q Consensus 33 ~~~~~~~i~~~m~~p~~ 49 (239)
+..+..++-++|++|+.
T Consensus 194 ~~avLv~lg~~~~~~~~ 210 (349)
T COG3949 194 AVAVLVPLGGRMESRKV 210 (349)
T ss_pred HhHhhhhhcccccccch
Confidence 45566677799999874
No 60
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=67.99 E-value=15 Score=29.89 Aligned_cols=63 Identities=10% Similarity=-0.043 Sum_probs=50.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhcCC----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039353 166 DFVNLIGSFALIPITFVFPSMVFIKVKANT----------ARVKKKAWHWFNILLFSLVTVATTVAAVRFVIK 228 (239)
Q Consensus 166 ~v~~liGa~~~~~l~fi~P~l~~l~~~~~~----------~~~~~~~~~~~~ii~G~~~~v~gt~~si~~li~ 228 (239)
.-.-..|++.++-+..++|+...+...+++ .++.+-...++...+|+++.+.+...|..++.+
T Consensus 45 ~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 45 CEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred hhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344566888889999999999999998763 123344678888899999999999999998876
No 61
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=65.10 E-value=1.1e+02 Score=27.95 Aligned_cols=25 Identities=8% Similarity=0.296 Sum_probs=17.1
Q ss_pred chHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 039353 163 FIGDFVNLIGSFALIPITFVFPSMVFIKV 191 (239)
Q Consensus 163 ~~~~v~~liGa~~~~~l~fi~P~l~~l~~ 191 (239)
.++.++. .+...+.++.|...-+..
T Consensus 331 GL~~Ii~----isvPvL~~iYPiaI~Lv~ 355 (431)
T COG1114 331 GLEQIIK----ISVPVLTAIYPIAIALVL 355 (431)
T ss_pred hHHHHHH----HHHHHHHHHhHHHHHHHH
Confidence 4566666 556778888888776554
No 62
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=64.46 E-value=1.1e+02 Score=30.30 Aligned_cols=187 Identities=11% Similarity=0.096 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhh-hh--------hccccccccccc
Q 039353 18 VFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIV-GY--------WAYGSTASVYLP 87 (239)
Q Consensus 18 ~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~-gY--------l~fG~~v~~~Il 87 (239)
.+.+..-+|++.=|- |...=.+-..++|||+| ..+-....+.+.+..+|+.-.++ |- =.||+.+.++..
T Consensus 409 ~tSFtlLvgIfFPsVTGImaGSNrSGDLkDaQk-SIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lV 487 (1075)
T KOG2082|consen 409 TTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQK-SIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLV 487 (1075)
T ss_pred hhhHHHHHHhhccccceeeecCCCCccccchhh-cCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEE
Confidence 345555666666566 66555667789999986 46656777777777777754422 21 235555655543
Q ss_pred -cCc--ccChHHHHHHHHH----HHHHHhhhhhhhhhcH-HHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 039353 88 -EQM--SCVKWVKVFINSS----VFLQSMVCQHVFISPI-HETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAA 159 (239)
Q Consensus 88 -~n~--~~~~~~~~~~~~~----~~~~~~~s~pl~~~p~-~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~ 159 (239)
-++ |. .|+..++..+ ..++.+++-|=.++.+ .+.+-.++..-...+ .++.+.|- .++.++.+-.++
T Consensus 488 va~laWPs-PwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~--~ngEPt~a---LlLT~~Ice~gI 561 (1075)
T KOG2082|consen 488 VATLAWPS-PWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK--ANGEPTWA---LLLTAIICECGI 561 (1075)
T ss_pred EEEecCCC-ceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc--CCCCccHH---HHHHHHHHHhhh
Confidence 223 32 3544444332 3344455555333332 222222222100011 12222222 233444555666
Q ss_pred HccchHHHHHHHhhhhhhHHHHHHHHH---HHHHHhcCC-chhHHHHHHHHHHHHHHHH
Q 039353 160 AFPFIGDFVNLIGSFALIPITFVFPSM---VFIKVKANT-ARVKKKAWHWFNILLFSLV 214 (239)
Q Consensus 160 ~vP~~~~v~~liGa~~~~~l~fi~P~l---~~l~~~~~~-~~~~~~~~~~~~ii~G~~~ 214 (239)
.+-+++.+--++-=+ ..+||.+=-+ .+--++.++ |+++ |.-||.+.++|...
T Consensus 562 LigslD~iApilsmF--FLMCY~fVNLaCavqtLLrtPnWRPRf-kyyHW~LSflG~sL 617 (1075)
T KOG2082|consen 562 LIGSLDLIAPILSMF--FLMCYLFVNLACAVQTLLRTPNWRPRF-KYYHWSLSFLGASL 617 (1075)
T ss_pred eeechhHHHHHHHHH--HHHHHHHHhHHHHHHHHhcCCCCCccc-hhhhhHHHHHHHHH
Confidence 777777766655422 2344433222 222222211 2222 35666666665443
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=63.32 E-value=1.1e+02 Score=27.34 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=23.4
Q ss_pred HHhhccCchhhcHHHHHHHHHHHHHHHHHhh---hhhhhhccc
Q 039353 40 MQSTLRQPVVKNMRKALYVQFTVGLLFYYGI---PIVGYWAYG 79 (239)
Q Consensus 40 i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~---g~~gYl~fG 79 (239)
.|+-+.-++.|+.+|....+.......+... |..++..|.
T Consensus 223 ~qR~~a~ks~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~ 265 (407)
T TIGR00813 223 VQRCLAAKSAKHAKKGCLISGVLKLLPMFGAVLPGLIARALYT 265 (407)
T ss_pred hhHHHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666655555567777777666555555544 444444453
No 64
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=61.68 E-value=1.3e+02 Score=27.59 Aligned_cols=26 Identities=8% Similarity=0.395 Sum_probs=18.8
Q ss_pred cchHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 039353 162 PFIGDFVNLIGSFALIPITFVFPSMVFIKV 191 (239)
Q Consensus 162 P~~~~v~~liGa~~~~~l~fi~P~l~~l~~ 191 (239)
=.++.++++ +...+.++.|...-+.+
T Consensus 328 ~Gl~~Ii~~----s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 328 LGLDQIIKI----SVPILMFIYPVAIVLIL 353 (427)
T ss_pred hCHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 356777774 44778899998877665
No 65
>PRK12768 CysZ-like protein; Reviewed
Probab=61.49 E-value=98 Score=26.02 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=21.0
Q ss_pred HhhccCchhhcHHHHHHHHHHHHHHHHHhhh
Q 039353 41 QSTLRQPVVKNMRKALYVQFTVGLLFYYGIP 71 (239)
Q Consensus 41 ~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g 71 (239)
.+++.||. +++++..++..+..+....+
T Consensus 9 ~~ql~~~~---~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 9 LARLLSPP---MRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHhCCHH---HHHHHHHHHHHHHHHHHHHH
Confidence 35678886 88888888888877777654
No 66
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=58.92 E-value=1.1e+02 Score=30.04 Aligned_cols=50 Identities=10% Similarity=0.145 Sum_probs=36.9
Q ss_pred HHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhh
Q 039353 23 GAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIV 73 (239)
Q Consensus 23 ~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~ 73 (239)
..||++.-+- |...=.+...|+|+|+| ..++...+++.+++++|.+....
T Consensus 298 ~~FgV~F~g~tGimAGAnMSgELk~PSk-SIP~GTl~ava~Tf~~Yvl~~fl 348 (945)
T KOG1288|consen 298 STFGVFFPGTTGIMAGANMSGELKAPSK-SIPKGTLSAVAFTFFVYVLVIFL 348 (945)
T ss_pred hhheeeeccchhhhcCCCcCccccCccc-cCCccchHHHHHHHHHHHHHHHH
Confidence 3345554444 54444567889999998 58888999999999999887543
No 67
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=57.91 E-value=1.4e+02 Score=26.65 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHccch--HHHHHHHhhhhhhHHHHHHHHHH
Q 039353 150 LFAFNIFVAAAFPFI--GDFVNLIGSFALIPITFVFPSMV 187 (239)
Q Consensus 150 ~~~~~~~iA~~vP~~--~~v~~liGa~~~~~l~fi~P~l~ 187 (239)
+.++..++|...|+. -++..+..+.. .+-.+|+++
T Consensus 350 ~~~i~~~la~~~~~~~i~~~~~~~~~~~---~~~~~~~~~ 386 (406)
T PF00474_consen 350 IGIIAILLALFFPDSGIIDLILFAFGIL---AAPFFPPLL 386 (406)
T ss_dssp HHHHHHHHGGGGGGSSHHHHHHHHHTTT---HHHHHHHHH
T ss_pred eHHhHHHHHhccccchHHHHHHHHHHHH---HHHHHHHHH
Confidence 344556667777774 44444444433 333444443
No 68
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=56.53 E-value=1.9e+02 Score=27.76 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=44.7
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHH---HHHHHHHhhhhhhhhcccc
Q 039353 8 YELKGSKTDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFT---VGLLFYYGIPIVGYWAYGS 80 (239)
Q Consensus 8 y~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~---~~~~~y~~~g~~gYl~fG~ 80 (239)
+...++..+++|.++.+-....-++ |.+-. .+|+-|.-|+.|+-++.+..... +.+..+...|++-|..|.|
T Consensus 228 ~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~-~VQR~lsl~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~ 303 (585)
T KOG2349|consen 228 FLRDPTVRHTPWSLLFGGTIMWLSYYGVNQL-IVQRYLSLPSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTD 303 (585)
T ss_pred ccCCCcccccchhHhcCCcHHHHHHHhhhHH-HHhHHhccccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeeccc
Confidence 3444444577888777777777788 63322 26777777777677766544333 3344455666676766654
No 69
>PRK11375 allantoin permease; Provisional
Probab=55.58 E-value=1.8e+02 Score=27.11 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhc--ccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhh----hhcccccccc--ccccCc
Q 039353 19 FNALGAISAAVVANA--PCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVG----YWAYGSTASV--YLPEQM 90 (239)
Q Consensus 19 ~~~~~~~~~~~faf~--~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~g----Yl~fG~~v~~--~Il~n~ 90 (239)
+.+..++...+=++. ..+.|..-+..|+|+. -.+....++.+...+...+|+.. ...+|+...+ +++...
T Consensus 227 ~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~~--~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~ 304 (484)
T PRK11375 227 FLFLVVINAVVAVWAAPAVSASDFTQNAHSFRA--QALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRW 304 (484)
T ss_pred HHHHHHHHHHHHHHHHHHccccchhcccCChhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHh
Confidence 444444444333442 4478888888888753 32333344444444443333332 3456654322 122222
Q ss_pred ccChHHHHHHHHHHHHHHhhhhh-hhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHH--Hccc---h
Q 039353 91 SCVKWVKVFINSSVFLQSMVCQH-VFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAA--AFPF---I 164 (239)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~s~p-l~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~--~vP~---~ 164 (239)
. +.+...++-+...++.+.+-. -+.++.-..+...+-++ .+ .+|...- .-++..+++. .+.+ |
T Consensus 305 ~-~~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~--i~------~~~~~~i--~~iig~~~~pw~~~~~~~~f 373 (484)
T PRK11375 305 D-SLFASFFAVLVILMTTISTNATGNIIPAGYQIAALAPTK--LT------YKNGVLI--ASIISLLICPWKLMENQDSI 373 (484)
T ss_pred c-chHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcCc--cc------hhhHHHH--HHHHHHHhccHHHhccHHHH
Confidence 2 122233333444555555432 45566655666655421 11 1232211 1112222222 2223 8
Q ss_pred HHHHHHHhhhhhhHHHHHH
Q 039353 165 GDFVNLIGSFALIPITFVF 183 (239)
Q Consensus 165 ~~v~~liGa~~~~~l~fi~ 183 (239)
..++++.|++.+.....++
T Consensus 374 ~~FL~~lg~~l~Pi~gImi 392 (484)
T PRK11375 374 YLFLDIIGGMLGPVIGVMM 392 (484)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888999988877666555
No 70
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=54.49 E-value=1.6e+02 Score=26.36 Aligned_cols=132 Identities=15% Similarity=0.155 Sum_probs=67.2
Q ss_pred cchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcccChHHHHHHHHHHHHHHhhhhhh
Q 039353 35 CLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHV 114 (239)
Q Consensus 35 ~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~~~~s~pl 114 (239)
...+...+..|+|+ +.......+..+...+...+|...-.+.++. |..+-+...+ .....-++..++...+-..
T Consensus 190 ~~~~DysRy~k~~~--~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~---d~~~~~~~~g-~~~~~~~~~~l~~~~~n~~ 263 (386)
T TIGR02358 190 PLIADYTRFARNPR--HVFLGTVLGYFIGSCWMYFLGLAVTLATGQT---DIISILAGAG-LGIPALLIILLSTVTTTFM 263 (386)
T ss_pred HHccchhhhcCCCc--ceehHHHHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHhcc-HHHHHHHHHHHhHHHHHHH
Confidence 34677777777665 3444566677777777778887777666653 2222222111 1122334445555555555
Q ss_pred hhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHH--HccchHHHHHHHhhhhhhHHHHHH
Q 039353 115 FISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAA--AFPFIGDFVNLIGSFALIPITFVF 183 (239)
Q Consensus 115 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~--~vP~~~~v~~liGa~~~~~l~fi~ 183 (239)
+.++.-..+...+.+. ++.++.++ ..++...++. ....++.++++.|...+......+
T Consensus 264 N~ys~~l~l~~l~~~~--------~~~~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI~i 323 (386)
T TIGR02358 264 DIYSAAISTGNLLPRL--------KVKHLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFAPLYAVVF 323 (386)
T ss_pred HHHHHHHHHHHHHHhh--------cchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555554221 11122211 1222222222 235677888887776655554444
No 71
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=46.01 E-value=2.1e+02 Score=25.24 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcc
Q 039353 52 MRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMS 91 (239)
Q Consensus 52 ~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~ 91 (239)
-.+++.++...+.-.-+.+...||.......++++..++.
T Consensus 46 T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~l~ 85 (340)
T PF12794_consen 46 TPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVALG 85 (340)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHH
Confidence 3467888888888888899999998887655666555554
No 72
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=41.83 E-value=2.1e+02 Score=24.11 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=27.4
Q ss_pred hhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcc
Q 039353 42 STLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMS 91 (239)
Q Consensus 42 ~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~ 91 (239)
+.+++|. +++.......+..+++...-..++..+++.. +.++..+|
T Consensus 19 ~~l~~P~---lr~~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p 64 (251)
T PRK04949 19 KLILQPG---LRRFVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLP 64 (251)
T ss_pred HHhcCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCc
Confidence 4567776 6677777777777777666444444444332 34444455
No 73
>PRK00701 manganese transport protein MntH; Reviewed
Probab=41.43 E-value=2.8e+02 Score=25.42 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHhhhhhhHHHHHHHHHH
Q 039353 140 IKRRFFLRGFLFAFNIFVAAAF--PFIGDFVNLIGSFALIPITFVFPSMV 187 (239)
Q Consensus 140 ~~~r~~~r~~~~~~~~~iA~~v--P~~~~v~~liGa~~~~~l~fi~P~l~ 187 (239)
+.+|...|.+.++.+..++..- .+...++-... ...++.+|...
T Consensus 346 ~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aq----v~~~i~LP~~~ 391 (439)
T PRK00701 346 WVRRLITRGLAMVPALIVILLGGELDPTRLLVLSQ----VVLSFGLPFAL 391 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH----HHHHHHHHHHH
Confidence 4456666666555555544433 23333333333 34455555544
No 74
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=39.95 E-value=1.8e+02 Score=25.27 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039353 204 HWFNILLFSLVTVATTVAAVRFVIKDIH 231 (239)
Q Consensus 204 ~~~~ii~G~~~~v~gt~~si~~li~~~~ 231 (239)
.+.+++.|++++..|.+.+++.-.+..+
T Consensus 280 ~~~l~~~~~~ig~l~s~~s~~r~L~~~~ 307 (309)
T PRK11026 280 CLLLLLVCSMIGWVAAWLATVQHLRRFT 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456788888899999988888777653
No 75
>PLN02680 carbon-monoxide oxygenase
Probab=39.58 E-value=1.1e+02 Score=25.53 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=46.6
Q ss_pred hcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcccChHHHHHHHHHHHHHHhhhhhhhhhcH
Q 039353 50 KNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPI 119 (239)
Q Consensus 50 ~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 119 (239)
|+.+|.+-+..=...+.....|+..-..+-+ +..+-+-++-..|+.....+++.++.+..+..+..|-
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn--~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHN--EKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3566777777777777778888866444444 3444433443478888888888888888887777774
No 76
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=39.35 E-value=1.2e+02 Score=23.35 Aligned_cols=67 Identities=19% Similarity=0.168 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcccChHHHHHHHHHHHHHHhhhhhhhhhcH
Q 039353 51 NMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPI 119 (239)
Q Consensus 51 ~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 119 (239)
+.++.+-+.+-...++..+.|+..-..+-++ ..+-+..+-..|+..+.-+++.++.+..+..+..|.
T Consensus 38 ~~~k~iH~~l~~la~~~~vvGl~avf~~~~~--~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 38 EVQKAVHLTLHLVALVLGIVGIYAAFKFHNE--VGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556677777777777778887554444443 333333333368888888888888888876666775
No 77
>PRK12488 acetate permease; Provisional
Probab=38.77 E-value=3.4e+02 Score=25.60 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=21.8
Q ss_pred HHhhccCchhhcHHHHHHHHHHHHHHHH---Hhhhhhhhhcccc
Q 039353 40 MQSTLRQPVVKNMRKALYVQFTVGLLFY---YGIPIVGYWAYGS 80 (239)
Q Consensus 40 i~~~m~~p~~~~~~~~~~~s~~~~~~~y---~~~g~~gYl~fG~ 80 (239)
+|+-+.-|+.|+.++...++..+...+| ...|..++..+++
T Consensus 281 ~qR~~aaks~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~l~~~ 324 (549)
T PRK12488 281 LMRFFTVSDAREARKSVLYATGFIGYFYLLIIVVGFGAIVMVGT 324 (549)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555544444466676666544433333 4555555655654
No 78
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=38.76 E-value=2.2e+02 Score=23.31 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=28.7
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccc
Q 039353 93 VKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLK 129 (239)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~ 129 (239)
.+.+..-.+++...+...+.|...+-....+..-+.+
T Consensus 54 ~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~ 90 (215)
T TIGR00945 54 TEPFFTYIKLSLIVGIILSSPVILYQIWAFILPGLYE 90 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 4567777789999999999999988776666665554
No 79
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=38.42 E-value=1.9e+02 Score=23.88 Aligned_cols=78 Identities=15% Similarity=0.065 Sum_probs=49.7
Q ss_pred HhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcccChHHHHHHHHHHHHHHhhhhhhhhhcH
Q 039353 41 QSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPI 119 (239)
Q Consensus 41 ~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 119 (239)
++..++++| +..|.+-+..-...++..++|+..-..+-|+.+..+-+-++-..|.....-+++.++.+..+..+..|.
T Consensus 46 yr~~~~~~k-~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 46 YRVFRNTRK-KRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred hccCccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444333 445667777777777777777655444555544455444444478888888888888888887766774
No 80
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=37.87 E-value=2.5e+02 Score=24.08 Aligned_cols=42 Identities=12% Similarity=0.289 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHccchHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 039353 149 FLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVK 192 (239)
Q Consensus 149 ~~~~~~~~iA~~vP~~~~v~~liGa~~~~~l~fi~P~l~~l~~~ 192 (239)
.+.....++++.+|++. .+.+-.+.+.++.+.+|+..-++..
T Consensus 5 ~~~~~~~~~~~~~~~~~--~~~lr~~~g~~~vlf~PGy~l~~~l 46 (287)
T PF07760_consen 5 ILLVLLALLAILVPDLN--IPPLRVILGFPFVLFLPGYALVAAL 46 (287)
T ss_pred HHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHhccHHHHHHH
Confidence 34445555666777765 6666677778888889999988876
No 81
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=36.83 E-value=2.6e+02 Score=24.31 Aligned_cols=29 Identities=7% Similarity=-0.204 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 039353 203 WHWFNILLFSLVTVATTVAAVRFVIKDIH 231 (239)
Q Consensus 203 ~~~~~ii~G~~~~v~gt~~si~~li~~~~ 231 (239)
....++.+|++++..|.+.+++.-.+..+
T Consensus 279 ~~~~l~~~g~~lg~lgs~~s~~r~Lr~~~ 307 (309)
T TIGR00439 279 ELGLLLGFCIALGVVGAWLATTQHLLCFK 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34567788899999999999988777654
No 82
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=36.28 E-value=1.6e+02 Score=21.16 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039353 202 AWHWFNILLFSLVTVATTVAAV 223 (239)
Q Consensus 202 ~~~~~~ii~G~~~~v~gt~~si 223 (239)
++-..++++|++.++...|.-+
T Consensus 75 ~~tl~~lllGv~~G~~n~w~wi 96 (100)
T TIGR02230 75 SWTLTMLIVGVVIGCLNAWHWV 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456688888888887776544
No 83
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=36.16 E-value=3.5e+02 Score=24.97 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=16.9
Q ss_pred chHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 039353 163 FIGDFVNLIGSFALIPITFVFPSMVFIKV 191 (239)
Q Consensus 163 ~~~~v~~liGa~~~~~l~fi~P~l~~l~~ 191 (239)
.++.+++ .....+.++.|...-+.+
T Consensus 332 G~~~II~----~s~PiL~~iYP~~IvLil 356 (439)
T PRK15433 332 GLSQLIQ----ISVPVLTAIYPPCIALVV 356 (439)
T ss_pred HHHHHHH----HHHHHHHHHhHHHHHHHH
Confidence 4666666 445778888887776554
No 84
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=35.45 E-value=56 Score=21.27 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=18.6
Q ss_pred ccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 039353 44 LRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWA 77 (239)
Q Consensus 44 m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~ 77 (239)
-++|+++.|.+++.. +.+-..++|.+||..
T Consensus 20 ~~KPd~~Ef~~iak~----t~iG~~i~G~IGf~I 49 (61)
T TIGR00327 20 CKKPDLEEYLKVAKV----TGIGIIIVGIIGYII 49 (61)
T ss_pred hcCCCHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 467888788775443 333345667777754
No 85
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=35.42 E-value=40 Score=20.58 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccccc
Q 039353 54 KALYVQFTVGLLFYYGIPIVGYWAYGSTA 82 (239)
Q Consensus 54 ~~~~~s~~~~~~~y~~~g~~gYl~fG~~v 82 (239)
.+...++.+.+++-.++|..-|-+||...
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 34556667777777788888888888753
No 86
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=33.84 E-value=2.5e+02 Score=22.54 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHHHHHhc
Q 039353 174 FALIPITFVFPSMVFIKVKA 193 (239)
Q Consensus 174 ~~~~~l~fi~P~l~~l~~~~ 193 (239)
.......+.+|+-+.++..+
T Consensus 61 ilt~~~~~~lP~~~~l~a~~ 80 (186)
T COG5052 61 ILTNVAGFSLPAQLSLVAFY 80 (186)
T ss_pred HHHHHHHHHccHHHHHHHHH
Confidence 45567788999888877765
No 87
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=33.61 E-value=3.7e+02 Score=24.50 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHh--cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Q 039353 18 VFNALGAISAAVVAN--APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGST 81 (239)
Q Consensus 18 ~~~~~~~~~~~~faf--~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~ 81 (239)
+.+-...++.-.++- +...+|.+-+.-.+.+++++++.+..+......+-+...+ +...+++.
T Consensus 238 YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~-~~~~~a~~ 302 (451)
T PF03023_consen 238 YAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASI-GLIVLAEP 302 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHH
Confidence 344444455544444 4455666665444444434655555555555444444433 33344443
No 88
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=33.04 E-value=97 Score=19.39 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=13.2
Q ss_pred hHHHHhhccC---chhhcHHHHHH
Q 039353 37 LPEMQSTLRQ---PVVKNMRKALY 57 (239)
Q Consensus 37 ~~~i~~~m~~---p~~~~~~~~~~ 57 (239)
+-++.+|||+ |++++..+...
T Consensus 5 ~~~~~~ElkkV~WPt~~e~~~~t~ 28 (55)
T TIGR00964 5 FKEVKAELKKVVWPSRKELITYTI 28 (55)
T ss_pred HHHHHHHHhcCcCcCHHHHHhHHH
Confidence 3467889987 77655554433
No 89
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=32.84 E-value=65 Score=20.94 Aligned_cols=30 Identities=20% Similarity=0.177 Sum_probs=18.3
Q ss_pred ccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 039353 44 LRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWA 77 (239)
Q Consensus 44 m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~ 77 (239)
-++|+++.|.+++.. +.+-..++|.+||..
T Consensus 24 ~~KPd~~Ef~~ia~~----~~iG~~i~G~iGf~I 53 (61)
T PRK09400 24 ARKPTREEFLLVAKV----TGLGILLIGLIGFII 53 (61)
T ss_pred hcCCCHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 467888788775443 333345667777753
No 90
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=32.66 E-value=1.2e+02 Score=23.79 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=37.5
Q ss_pred HHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHH-HHHHHhhhhhhhhcccccc
Q 039353 25 ISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVG-LLFYYGIPIVGYWAYGSTA 82 (239)
Q Consensus 25 ~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~-~~~y~~~g~~gYl~fG~~v 82 (239)
+-...=++ ..+..++-++++|+|.-... ...+... +++|.++|+.+|+++-.+.
T Consensus 17 ~~~a~gs~~~~~~~~~wy~~L~kP~w~pp----~~~f~~vWtvLy~l~~iSa~lvW~~~~ 72 (161)
T COG3476 17 LAVALGSFFISSRDPNWYNNLKKPFWLPP----EWAFPPVWTVLYALIGISAYLVWEKGP 72 (161)
T ss_pred HHHHHHHHHhccccHHHHHhccCCCCCCh----HHHhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 33334455 67777889999999973222 3344444 6779999999999997753
No 91
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=31.86 E-value=1.5e+02 Score=23.04 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=35.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039353 169 NLIGSFALIPITFVFPSMVFIKVKANTAR-VKKKAWHWFNILLFSLVTVATTVAAVRFVIK 228 (239)
Q Consensus 169 ~liGa~~~~~l~fi~P~l~~l~~~~~~~~-~~~~~~~~~~ii~G~~~~v~gt~~si~~li~ 228 (239)
+++|+-.+....|..|.+.+..-.+..++ ...+-.-.+-+++|+..+++|+..+-+...+
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y~ 93 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQYN 93 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788899988876541111000 0001112346778888888888877666554
No 92
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=31.11 E-value=2.5e+02 Score=21.81 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=47.2
Q ss_pred hcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcccChHHHHHHHHHHHHHHhhhhhhhhhcH
Q 039353 50 KNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPI 119 (239)
Q Consensus 50 ~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 119 (239)
|+.+|.+-+..=...++..+.|+..-..+-++. ++.+-++-..|+..+..+++.++.+..+..+..|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 456666777777777777777777665555442 33322333468888888899999999988888885
No 93
>CHL00020 psbN photosystem II protein N
Probab=30.33 E-value=36 Score=20.50 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccc
Q 039353 56 LYVQFTVGLLFYYGIPIVGYWAYGST 81 (239)
Q Consensus 56 ~~~s~~~~~~~y~~~g~~gYl~fG~~ 81 (239)
...++.+.+++..++|..-|-+||..
T Consensus 5 ~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 5 TLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhHHHHHHHHHHHhhheeeeeccCCc
Confidence 44566666777777777788888864
No 94
>PRK10263 DNA translocase FtsK; Provisional
Probab=28.67 E-value=7.5e+02 Score=26.47 Aligned_cols=33 Identities=3% Similarity=-0.027 Sum_probs=21.0
Q ss_pred cCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 039353 45 RQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWA 77 (239)
Q Consensus 45 ~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~ 77 (239)
++++..+.-+-+...+++.+.+|+.++++.|-.
T Consensus 14 ~~~~~~rrL~E~~gIlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 14 TKLSSGRRLLEALLILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 344433333335556667788899999999865
No 95
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=28.29 E-value=42 Score=20.23 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccccc
Q 039353 57 YVQFTVGLLFYYGIPIVGYWAYGSTA 82 (239)
Q Consensus 57 ~~s~~~~~~~y~~~g~~gYl~fG~~v 82 (239)
..+..+.+++-.++|..-|-+||...
T Consensus 6 ~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 6 VLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 34566667777778888888898643
No 96
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=27.70 E-value=2.8e+02 Score=21.23 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=46.0
Q ss_pred hcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcccChHHHHHHHHHHHHHHhhhhhhhhhcH
Q 039353 50 KNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPI 119 (239)
Q Consensus 50 ~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 119 (239)
|+..|.+-+..-...++..+.|+..-..+-++ .++-+-.+-..|.....-+++.++.+..+..+.+|.
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~--~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQA--NGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556677777777777777777766555444 233222233368888888888999999988887774
No 97
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=25.77 E-value=1.7e+02 Score=22.50 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039353 197 RVKKKAWHWFNILLFSLVTVATTVAAVR 224 (239)
Q Consensus 197 ~~~~~~~~~~~ii~G~~~~v~gt~~si~ 224 (239)
++..|..++.+-.++++.+++|.+...+
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~ 64 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFD 64 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445668888888888888888876653
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.40 E-value=1.4e+02 Score=22.36 Aligned_cols=24 Identities=13% Similarity=0.283 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039353 205 WFNILLFSLVTVATTVAAVRFVIK 228 (239)
Q Consensus 205 ~~~ii~G~~~~v~gt~~si~~li~ 228 (239)
++.|++|++.+++|+..-|.-.+.
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776655544444
No 99
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=25.22 E-value=61 Score=29.38 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=24.7
Q ss_pred ccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039353 34 PCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAY 78 (239)
Q Consensus 34 ~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~f 78 (239)
..+.+...+.+|+++. -.+....+..........+|++|-..-
T Consensus 218 ~~~~~DysRy~~~~~~--~~~~~~~~~~~~~~~~~~~g~lg~~~~ 260 (440)
T PF02133_consen 218 APNASDYSRYAKSDTS--AWWGFWLGFPGGFIPFVLVGILGAAAG 260 (440)
T ss_dssp HCCCHHHHTTC--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccHHhhCCCCCC--cEEEEeehhhhHHHHHHHHHHHHHHHH
Confidence 4556788888887663 344555666666566666665554443
No 100
>PRK11017 codB cytosine permease; Provisional
Probab=24.95 E-value=5.1e+02 Score=23.28 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHh-c-ccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 039353 20 NALGAISAAVVAN-A-PCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGS 80 (239)
Q Consensus 20 ~~~~~~~~~~faf-~-~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~ 80 (239)
.+..++...+=.+ . ..+.+...+..|+|++ .+ .....++.........+|...-.+.|+
T Consensus 184 ~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~-~~-~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 184 DFSAALTLVVGSFISGGTLTADFVRFGRSAKI-AV-LATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred cHHHHHHHHHHHHHHhHhcCCChHhhccCccc-ee-ehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444555444333 3 5667777787776642 22 234444445555555556555555554
No 101
>PTZ00478 Sec superfamily; Provisional
Probab=24.89 E-value=1e+02 Score=21.35 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=19.1
Q ss_pred hhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039353 42 STLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYW 76 (239)
Q Consensus 42 ~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl 76 (239)
+--++|.++.+.++...+ .+=+.++|.+||.
T Consensus 35 krctKPdrkEf~kiakat----~iGf~imG~IGy~ 65 (81)
T PTZ00478 35 RKCTKPDAKEYTNIAYAC----SVGFFIMGFIGYS 65 (81)
T ss_pred HHhcCCCHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 345678888888754432 2334556778874
No 102
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=23.68 E-value=5.2e+02 Score=26.09 Aligned_cols=75 Identities=9% Similarity=0.147 Sum_probs=36.4
Q ss_pred HHhhccCch---hhcHHHHHHHHHHHHHHHHH-hhhhhhhhccccccccccccC-cccChHHHHHHHHHHHHHHhhhhhh
Q 039353 40 MQSTLRQPV---VKNMRKALYVQFTVGLLFYY-GIPIVGYWAYGSTASVYLPEQ-MSCVKWVKVFINSSVFLQSMVCQHV 114 (239)
Q Consensus 40 i~~~m~~p~---~~~~~~~~~~s~~~~~~~y~-~~g~~gYl~fG~~v~~~Il~n-~~~~~~~~~~~~~~~~~~~~~s~pl 114 (239)
+.++.|++. ++++........ +..++|+ ...+.--.+||....+.= ++ ++....+..-+-.....+++.+-||
T Consensus 339 l~~DikrR~p~Y~SD~~Da~~~~~-la~~lfiYfa~l~P~ItFG~ll~~~T-dg~~~v~E~L~stal~GiifslfggQPL 416 (876)
T KOG1172|consen 339 LVLDIKRRLPHYKSDFRDAFNIQC-LAATLFIYFACLLPAITFGGLLGEAT-DGLIGVVETLLSTALCGIIFSLFGGQPL 416 (876)
T ss_pred HHHHHHhhcCCChHHHHHHhcccc-chHHHHHHHHhhhhHhhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 445555533 235555555444 3333333 333566788887543322 22 2211222222334566667778787
Q ss_pred hh
Q 039353 115 FI 116 (239)
Q Consensus 115 ~~ 116 (239)
.+
T Consensus 417 lI 418 (876)
T KOG1172|consen 417 LI 418 (876)
T ss_pred EE
Confidence 65
No 103
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=22.70 E-value=7.3e+02 Score=25.33 Aligned_cols=77 Identities=12% Similarity=0.196 Sum_probs=41.1
Q ss_pred HHhhccCch---hhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcccChHHHHHHHHHHHHHHhhhhhhhh
Q 039353 40 MQSTLRQPV---VKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFI 116 (239)
Q Consensus 40 i~~~m~~p~---~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~~~~s~pl~~ 116 (239)
+.+++|++- .++|+.....-.+..+++-....+.--++||...++.==..++....+..-+-..++.+++..-|+.+
T Consensus 348 li~DikRR~p~Y~SD~tDa~~~q~laa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~I 427 (900)
T TIGR00834 348 LIRDIKRRYPHYLSDFTDALNPQCLAAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLV 427 (900)
T ss_pred HHHHHHhhcccchHHHhhhhcchhHHHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEE
Confidence 556676654 34555555544333333333445677788886443322223332233333334567777788888865
No 104
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=22.04 E-value=6.7e+02 Score=23.64 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=19.6
Q ss_pred HHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhh
Q 039353 40 MQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVG 74 (239)
Q Consensus 40 i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~g 74 (239)
+++-+.-|+.|..+|...++......+|+..-+.|
T Consensus 281 ~~R~~taks~k~ar~s~~~~~~~~~~~~~~~~~~G 315 (549)
T TIGR02711 281 LMRFFTVSDAKEARKSVFYATGFMGYFYILTFIIG 315 (549)
T ss_pred heeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555677777766555555555433333
No 105
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=21.87 E-value=3.2e+02 Score=21.85 Aligned_cols=37 Identities=14% Similarity=0.008 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhH
Q 039353 142 RRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIP 178 (239)
Q Consensus 142 ~r~~~r~~~~~~~~~iA~~vP~~~~v~~liGa~~~~~ 178 (239)
.|.++.+.+.+++++++...-+...+++++.+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 45 (199)
T PF10112_consen 9 FRWILGVLIAAITFLVSFFGFDHSFLLSLLIGAVAFA 45 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444445555555554445555556555554433
No 106
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=21.81 E-value=2.8e+02 Score=19.12 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=27.8
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHH--HhcCCchhHHHHHHHHHHHHHHHH
Q 039353 164 IGDFVNLIGSFALIPITFVFPSMVFIK--VKANTARVKKKAWHWFNILLFSLV 214 (239)
Q Consensus 164 ~~~v~~liGa~~~~~l~fi~P~l~~l~--~~~~~~~~~~~~~~~~~ii~G~~~ 214 (239)
.-.+...-|++++. --.+.|.+.|.. .+|..++++|+.....++.+-.-+
T Consensus 14 ~l~vl~~y~~l~~~-YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF~FFPG 65 (81)
T PF10716_consen 14 TLLVLLAYAALAGL-YLLVVPLILYFWMNKRWYVMSSFERLFMYFLVFLFFPG 65 (81)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444445555544 345667666544 455567778887666655544433
No 107
>PF03073 TspO_MBR: TspO/MBR family; InterPro: IPR004307 Members of this group are involved in transmembrane signalling. In both prokaryotes and mitochondria they are localized to the outer membrane, and have been shown to bind and transport dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway [, ]. They are associated with the major outer membrane porins (in prokaryotes) and with the voltage-dependent anion channel (in mitochondria) []. Rhodobacter sphaeroides TspO (previously CrtK) is involved in signal transduction, functioning as a negative regulator of the expression of some photosynthesis genes (PpsR/AppA repressor/antirepressor regulon). This down-regulation is believed to be in response to oxygen levels. TspO works through (or modulates) the PpsR/AppA system and acts upstream of the site of action of these regulatory proteins []. It has been suggested that the TspO regulatory pathway works by regulating the efflux of certain tetrapyrrole intermediates of the haem/bacteriochlorophyll biosynthetic pathways in response to the availability of molecular oxygen, thereby causing the accumulation of a biosynthetic intermediate that serves as a corepressor for the regulated genes []. A homologue of the TspO protein in Rhizobium meliloti (Sinorhizobium meliloti) is involved in regulating expression of the ndi locus in response to stress conditions []. There is evidence that the S. meliloti TspO acts through, or in addition to, the FixL regulatory system. In animals, the peripheral-type benzodiazepine receptor (PBR, MBR) is a mitochondrial protein (located in the outer mitochondrial membrane) characterised by its ability to bind with nanomolar affinity to a variety of benzodiazepine-like drugs, as well as to dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway. Depending upon the tissue, it was shown to be involved in steroidogenesis, haem biosynthesis, apoptosis, cell growth and differentiation, mitochondrial respiratory control, and immune and stress response, but the precise function of the PBR remains unclear. The role of PBR in the regulation of cholesterol transport from the outer to the inner mitochondrial membrane, the rate-determining step in steroid biosynthesis, has been studied in detail. PBR is required for the binding, uptake and release, upon ligand activation, of the substrate cholesterol []. PBR forms a multimeric complex with the voltage-dependent anion channel (VDAC) [] and adenine nucleotide carrier []. Molecular modeling of PBR suggested that it might function as a channel for cholesterol. Indeed, cholesterol uptake and transport by bacterial cells was induced upon PBR expression. Mutagenesis studies identified a cholesterol recognition/interaction motif (CRAC) in the cytoplasmic C terminus of PBR [, ]. In complementation experiments, rat PBR (pk18) functionally substitutes for its homologue TspO in R. sphaeroides, negatively affecting transcription of specific photosynthesis genes []. This suggests that PBR may function as an oxygen sensor, transducing an oxygen-triggered signal leading to an adaptive cellular response. These observations suggest that fundamental aspects of this receptor and the downstream signal transduction pathway are conserved in bacteria and higher eukaryotic mitochondria. The alpha-3 subdivision of the purple bacteria is considered to be a likely source of the endosymbiont that ultimately gave rise to the mitochondrion. Therefore, it is possible that the mammalian PBR remains both evolutionarily and functionally related to the TspO of R. sphaeroides.; GO: 0016021 integral to membrane
Probab=21.74 E-value=1.9e+02 Score=22.03 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=31.1
Q ss_pred cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Q 039353 33 APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGST 81 (239)
Q Consensus 33 ~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~ 81 (239)
......+-++++++|. +...-..--.+=.++|..+|+.+|..+.+.
T Consensus 18 ~~~~~~~wy~~L~kP~---~~Pp~~~f~~vW~~ly~l~g~a~~~v~~~~ 63 (148)
T PF03073_consen 18 TPTDVSEWYDSLKKPS---WTPPGWVFGPVWTILYILMGIASYLVWRKG 63 (148)
T ss_pred cCCcchHHHhhccCCC---CCCcccHHHHHHHHHHHHHHHHHHhhHhcc
Confidence 3333477899999997 332222222345678999999999998764
No 108
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=21.52 E-value=4.9e+02 Score=21.88 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccc
Q 039353 93 VKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLK 129 (239)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~ 129 (239)
.+.+..-.+++..+++..+.|...+-+...+..-+.+
T Consensus 75 ~E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi~PgLy~ 111 (249)
T CHL00182 75 GEYFFSSIKISFYTGLLISSPFIIYQIILFILPGLTK 111 (249)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence 3566777789999999999999988777666665554
No 109
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=21.34 E-value=5.7e+02 Score=22.62 Aligned_cols=56 Identities=21% Similarity=0.181 Sum_probs=27.5
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039353 166 DFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAV 223 (239)
Q Consensus 166 ~v~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~ii~G~~~~v~gt~~si 223 (239)
.+-+++||+....+++++--..--.++|-+. +. .-....-+++|.++.++|...|.
T Consensus 41 ~v~~ligai~~~li~~~~~~~~~~~~~~le~-~i-~k~~~~~ilf~tiGLiiGLlia~ 96 (356)
T COG4956 41 YVDALIGAIIFFLISFWFGKYVLNWLKRLEE-QI-RKLPVTTILFGTIGLIIGLLIAV 96 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HhcCHHHHHHHHHHHHHHHHHHH
Confidence 3556788877766666664433333332111 11 11233455555555555555443
No 110
>PRK11281 hypothetical protein; Provisional
Probab=21.23 E-value=9.7e+02 Score=25.16 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 039353 53 RKALYVQFTVGLLFYYGIPIVGYWAYGS 80 (239)
Q Consensus 53 ~~~~~~s~~~~~~~y~~~g~~gYl~fG~ 80 (239)
.+++.++...+.-..+.+...||+.+..
T Consensus 543 ~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 543 PKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567777777777777778888877764
No 111
>PF04193 PQ-loop: PQ loop repeat
Probab=20.87 E-value=2e+02 Score=17.91 Aligned_cols=30 Identities=7% Similarity=0.199 Sum_probs=19.9
Q ss_pred HHHHHHHHh-cccchHHHHhhccCchhhcHH
Q 039353 24 AISAAVVAN-APCLLPEMQSTLRQPVVKNMR 53 (239)
Q Consensus 24 ~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~ 53 (239)
.+|...... ...-+|.+++..|+++.+...
T Consensus 4 ~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS 34 (61)
T PF04193_consen 4 ILGIISIVLWIISFLPQIIKNYKRKSTGGLS 34 (61)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHcccccccc
Confidence 345555555 566788899988887754443
No 112
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=20.54 E-value=1.4e+02 Score=18.58 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=10.1
Q ss_pred HHHhhccC---chhhcHHHH
Q 039353 39 EMQSTLRQ---PVVKNMRKA 55 (239)
Q Consensus 39 ~i~~~m~~---p~~~~~~~~ 55 (239)
++.+|||+ |++++..+.
T Consensus 8 ~~~~Elkkv~WP~~~e~~~~ 27 (57)
T PF00584_consen 8 EVKKELKKVTWPSRKELLKS 27 (57)
T ss_dssp CHHHHHHHHHCCCTHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHH
Confidence 45667765 766555553
No 113
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=20.51 E-value=2.4e+02 Score=17.82 Aligned_cols=32 Identities=6% Similarity=0.131 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccccccc
Q 039353 52 MRKALYVQFTVGLLFYYGIPIVGYWAYGSTASV 84 (239)
Q Consensus 52 ~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~ 84 (239)
++.++..+ .+..++|++.|+.-+..+.++.+.
T Consensus 22 F~fViik~-vismimylilGi~L~yis~~~~~~ 53 (54)
T PF04835_consen 22 FWFVIIKS-VISMIMYLILGIALIYISSNDDKK 53 (54)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhhccCcccc
Confidence 66655544 456788999998877777665543
No 114
>PF11345 DUF3147: Protein of unknown function (DUF3147); InterPro: IPR021493 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.31 E-value=3.5e+02 Score=19.63 Aligned_cols=20 Identities=25% Similarity=0.580 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHcc
Q 039353 143 RFFLRGFLFAFNIFVAAAFP 162 (239)
Q Consensus 143 r~~~r~~~~~~~~~iA~~vP 162 (239)
|+++.-..++.+.+++-.+|
T Consensus 4 rF~~GG~av~~~~ii~~~~~ 23 (108)
T PF11345_consen 4 RFLLGGLAVVAAYIISRKLP 23 (108)
T ss_pred eeeeccHHHHHHHHHHHHcC
Confidence 33444455556666666555
No 115
>PF14985 TM140: TM140 protein family
Probab=20.04 E-value=4.4e+02 Score=20.68 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=33.2
Q ss_pred HHHHccchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCchhHHH
Q 039353 157 VAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKK 201 (239)
Q Consensus 157 iA~~vP~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~ 201 (239)
=|..+|..+..++=.|--..-.++...|-=+.+..+.++...|+.
T Consensus 67 ealGvp~vgLaLARlgVYgalVltlFvplplLla~cn~~egeW~L 111 (181)
T PF14985_consen 67 EALGVPRVGLALARLGVYGALVLTLFVPLPLLLAWCNGDEGEWQL 111 (181)
T ss_pred HHcCCcHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhcCCcchhHH
Confidence 456778888888877777777788888877777777766666543
Done!