Query 039353
Match_columns 239
No_of_seqs 107 out of 1076
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 14:59:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.5 5E-06 1.7E-10 74.0 17.7 175 17-195 189-379 (445)
2 3gia_A Uncharacterized protein 98.1 6.2E-05 2.1E-09 66.9 14.8 64 15-79 184-248 (444)
3 4djk_A Probable glutamate/gamm 98.1 0.00012 4.2E-09 66.1 16.3 58 23-81 205-263 (511)
4 2jln_A MHP1; hydantoin, transp 73.6 23 0.00079 31.6 10.2 140 34-183 224-378 (501)
5 4b4a_A TATC, SEC-independent p 70.4 41 0.0014 27.2 15.1 96 93-193 58-176 (249)
6 3dh4_A Sodium/glucose cotransp 61.5 90 0.0031 27.9 15.1 39 40-78 242-283 (530)
7 2xq2_A Sodium/glucose cotransp 52.5 1.4E+02 0.0046 27.2 15.6 38 40-77 271-311 (593)
8 3mp7_B Preprotein translocase 31.5 46 0.0016 20.7 3.1 30 43-76 21-50 (61)
9 2ww9_B Protein transport prote 24.7 68 0.0023 21.2 3.1 30 43-76 38-67 (80)
10 1afo_A Glycophorin A; integral 24.3 1E+02 0.0035 17.3 4.2 24 205-228 12-35 (40)
11 1rh5_B Preprotein translocase 23.9 67 0.0023 20.8 3.0 30 44-77 26-55 (74)
12 3bo0_B Preprotein translocase 20.7 61 0.0021 20.1 2.3 36 39-78 12-54 (65)
13 2wwb_B SEC61gamma, protein tra 20.4 49 0.0017 21.1 1.7 30 43-76 24-53 (68)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.53 E-value=5e-06 Score=73.96 Aligned_cols=175 Identities=5% Similarity=-0.057 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccc----cccccCcc
Q 039353 17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTAS----VYLPEQMS 91 (239)
Q Consensus 17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~----~~Il~n~~ 91 (239)
++.++..++....|+| |........+|+|||+| +.+|.+..+...+.++|+..........+.+.- ++..+-+.
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r-~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 267 (445)
T 3l1l_A 189 TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR-NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAAR 267 (445)
T ss_dssp ----HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHH
Confidence 3567888899999999 99999999999999975 799999999999999999988777666654321 11111010
Q ss_pred --cChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc--ccCCC---cchhhHHHHHHHHHHHHHHHHHHHHcc--
Q 039353 92 --CVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL--EESTF---SRENIKRRFFLRGFLFAFNIFVAAAFP-- 162 (239)
Q Consensus 92 --~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~--~~~~~---~~~~~~~r~~~r~~~~~~~~~iA~~vP-- 162 (239)
...+...+..+...+..+.+.--.....-+.+...-+++ | +.+ ++++.+.+-++-...+.....+....|
T Consensus 268 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP-~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~ 346 (445)
T 3l1l_A 268 MALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP-PIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNA 346 (445)
T ss_dssp HHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSC-GGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence 012333444444445444443333233333332221110 0 011 011222232222221111111111223
Q ss_pred --chHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCC
Q 039353 163 --FIGDFVNLIGSFALIPITFVFPSMVFIKVKANT 195 (239)
Q Consensus 163 --~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~ 195 (239)
.++.+.++.+ .+..+.|.++++.+++.++++
T Consensus 347 ~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 347 TKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp HCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 3566666544 456789999999999998754
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.12 E-value=6.2e-05 Score=66.87 Aligned_cols=64 Identities=13% Similarity=0.236 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 039353 15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYG 79 (239)
Q Consensus 15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG 79 (239)
+.++.+++.++....|+| |........+|+|||+| +.+|.+..+...+.++|+...+......+
T Consensus 184 ~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 184 PSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKK-NVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456677888889999999 99999999999999975 79999999999999999988776555554
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.09 E-value=0.00012 Score=66.13 Aligned_cols=58 Identities=5% Similarity=-0.071 Sum_probs=50.2
Q ss_pred HHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Q 039353 23 GAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGST 81 (239)
Q Consensus 23 ~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~ 81 (239)
.++....|+| |........+|+|||+| +.+|++..++.++.++|+...+.-....+++
T Consensus 205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 205 VVFVAFILSYMGVEASATHVNEMSNPGR-DYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTHHHHHHHHTTGGGGTGGGSSSSCCTT-THHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccCccc-chhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 4567789999 99999999999999986 7999999999999999999887777666653
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=73.63 E-value=23 Score=31.63 Aligned_cols=140 Identities=11% Similarity=0.053 Sum_probs=62.2
Q ss_pred ccchHHHHhhccCchh---hcHHH----HHH---HHHHHHHHHHHhhhhhhhhccccccccccccC-cccChHHHHHHH-
Q 039353 34 PCLLPEMQSTLRQPVV---KNMRK----ALY---VQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQ-MSCVKWVKVFIN- 101 (239)
Q Consensus 34 ~~~~~~i~~~m~~p~~---~~~~~----~~~---~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n-~~~~~~~~~~~~- 101 (239)
..+.+...+.+|+++. +++.+ +.. .+..+...+...+|+..-...++.....++.. ++.+.++..+.-
T Consensus 224 ~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~ 303 (501)
T 2jln_A 224 VVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQ 303 (501)
T ss_dssp HTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHH
T ss_pred HhccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHH
Confidence 4667888888987753 11222 322 33334444444444432222222111122222 222222233443
Q ss_pred HHHHHHHhhhhhh-hhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHhhhhhhH
Q 039353 102 SSVFLQSMVCQHV-FISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAF--PFIGDFVNLIGSFALIP 178 (239)
Q Consensus 102 ~~~~~~~~~s~pl-~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~v--P~~~~v~~liGa~~~~~ 178 (239)
+...+..+.+--. ..++.-..+.+.+.+. . ++ ++..+ +..++..+++... ..+..++++.|.+....
T Consensus 304 ~~~~la~i~tn~~~n~ys~~~~l~~~~~~~----i---~~-~~~~~--i~~vi~~~i~~~~~~~~f~~FL~~lg~~l~P~ 373 (501)
T 2jln_A 304 VFVLLATWSTNPAANLLSPAYTLCSTFPRV----F---TF-KTGVI--VSAVVGLLMMPWQFAGVLNTFLNLLASALGPL 373 (501)
T ss_dssp HHHHHHHHTTHHHHHTHHHHHHHHHHSTTT----C---CH-HHHHH--HHHHHHHHTCGGGTHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhCccc----c---ch-hHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4455555444443 5666666666654321 0 11 12211 1122223333321 34777888888777666
Q ss_pred HHHHH
Q 039353 179 ITFVF 183 (239)
Q Consensus 179 l~fi~ 183 (239)
.+.++
T Consensus 374 ~gI~l 378 (501)
T 2jln_A 374 AGIMI 378 (501)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 5
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=70.35 E-value=41 Score=27.18 Aligned_cols=96 Identities=14% Similarity=0.246 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHc-----------
Q 039353 93 VKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAF----------- 161 (239)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~v----------- 161 (239)
.+.+..-.+++...+.+.+.|...+-....+..-+.++ |+++ ...-......+...-...|..+
T Consensus 58 ~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~-Err~----~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~ 132 (249)
T 4b4a_A 58 TEPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSH-EKRA----FIPLLLGSILLFMLGALFAYFIVLPLALKFLLG 132 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCC-CTTT----THHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHh-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777888999999999999888877776666543 3222 1122233334444444444422
Q ss_pred ---------c--chHHHHHHHhhhhhh-HHHHHHHHHHHHHHhc
Q 039353 162 ---------P--FIGDFVNLIGSFALI-PITFVFPSMVFIKVKA 193 (239)
Q Consensus 162 ---------P--~~~~v~~liGa~~~~-~l~fi~P~l~~l~~~~ 193 (239)
| ++++-++++-.+..+ .++|-+|-+..+-.+-
T Consensus 133 ~~~~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~~ 176 (249)
T 4b4a_A 133 LGFTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKA 176 (249)
T ss_dssp SSSTTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred cchhhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5 677777776655543 4889999998877664
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=61.46 E-value=90 Score=27.90 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=20.2
Q ss_pred HHhhccCchhhcHHHHHHHHHHHHHHHH---Hhhhhhhhhcc
Q 039353 40 MQSTLRQPVVKNMRKALYVQFTVGLLFY---YGIPIVGYWAY 78 (239)
Q Consensus 40 i~~~m~~p~~~~~~~~~~~s~~~~~~~y---~~~g~~gYl~f 78 (239)
+|+-|.-++.|+.++....+........ ...|+.++..+
T Consensus 242 ~qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~ 283 (530)
T 3dh4_A 242 IQRTLAAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVIT 283 (530)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655444456666555544433333 34455666555
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=52.51 E-value=1.4e+02 Score=27.16 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=19.7
Q ss_pred HHhhccCchhhcHHHHHHHHHHHHHHH---HHhhhhhhhhc
Q 039353 40 MQSTLRQPVVKNMRKALYVQFTVGLLF---YYGIPIVGYWA 77 (239)
Q Consensus 40 i~~~m~~p~~~~~~~~~~~s~~~~~~~---y~~~g~~gYl~ 77 (239)
.|+-|..|+.|+.++....+-.....+ ....|+.++..
T Consensus 271 ~qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~ 311 (593)
T 2xq2_A 271 IQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVLPGIAAYVI 311 (593)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHTTTHHHHHTHHHHHHHHH
T ss_pred HHHhheeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554446666655554443333 33456666554
No 8
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=31.48 E-value=46 Score=20.71 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=17.9
Q ss_pred hccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039353 43 TLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYW 76 (239)
Q Consensus 43 ~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl 76 (239)
--++|+++.|.++...+.. -..++|.+||.
T Consensus 21 ~~~KPd~~Ef~~iak~~~i----G~~i~G~iGf~ 50 (61)
T 3mp7_B 21 VTKKPNWATYKRAAKITGL----GIILIGLIGML 50 (61)
T ss_dssp HSCCCCTTHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3467888888876544333 33445666664
No 9
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=24.73 E-value=68 Score=21.16 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=18.6
Q ss_pred hccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039353 43 TLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYW 76 (239)
Q Consensus 43 ~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl 76 (239)
--++|+++.|.+++..+ .+=.+++|.+||.
T Consensus 38 ~~~KPdr~Ef~~iak~t----~iG~~imG~IGfi 67 (80)
T 2ww9_B 38 KCKKPDLKEYTKIVKAV----GIGFIAVGIIGYA 67 (80)
T ss_dssp SCCCCCHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 34678888887754433 3334566777775
No 10
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=24.26 E-value=1e+02 Score=17.28 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039353 205 WFNILLFSLVTVATTVAAVRFVIK 228 (239)
Q Consensus 205 ~~~ii~G~~~~v~gt~~si~~li~ 228 (239)
...+++|+..+++||...+.--+.
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777765544443
No 11
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=23.94 E-value=67 Score=20.84 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=17.9
Q ss_pred ccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 039353 44 LRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWA 77 (239)
Q Consensus 44 m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~ 77 (239)
-++|+++.|.+++..+. +-..++|.+||..
T Consensus 26 ~~KPdr~EF~~iak~~~----iG~~imG~IGfiI 55 (74)
T 1rh5_B 26 LKKPTKDEYLAVAKVTA----LGISLLGIIGYII 55 (74)
T ss_dssp EECCCHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 46788888877554433 2334556666643
No 12
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=20.71 E-value=61 Score=20.05 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=16.5
Q ss_pred HHHhhccC---chh----hcHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039353 39 EMQSTLRQ---PVV----KNMRKALYVQFTVGLLFYYGIPIVGYWAY 78 (239)
Q Consensus 39 ~i~~~m~~---p~~----~~~~~~~~~s~~~~~~~y~~~g~~gYl~f 78 (239)
+..+||++ |++ +.+..++..+ .+....+|++|++.+
T Consensus 12 ~~~~E~kkV~wptrKp~~~e~~~v~~~t----~vv~~~v~~i~~~i~ 54 (65)
T 3bo0_B 12 EARTEVRKVIWPTRKPTKDEYLAVAKVT----ALGISLLGIIGYIIH 54 (65)
T ss_dssp HHHHHHHHHSCTTTTTCTTHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHhheeccCCCCCHHHHHHHHHHH----HhhhhHHHHHHHHHH
Confidence 45566643 444 5665433332 233334444454443
No 13
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=20.40 E-value=49 Score=21.09 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=18.5
Q ss_pred hccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039353 43 TLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYW 76 (239)
Q Consensus 43 ~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl 76 (239)
--++|+++.|.+++..+ .+=..++|.+||.
T Consensus 24 ~~~KPdr~Ef~~iak~~----~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 24 RCTKPDRKEFQKIAMAT----AIGFAIMGFIGFF 53 (68)
T ss_dssp HCCCCCTHHHHHHHHHS----SHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 34678888888754433 3334556777775
Done!