Query 039353
Match_columns 239
No_of_seqs 107 out of 1076
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 14:59:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039353.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039353hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 34.1 16 0.0012 20.9 2.8 31 44-78 15-45 (56)
2 d1wpga4 f.33.1.1 (A:1-124,A:24 9.3 4.1E+02 0.03 20.9 7.9 24 147-170 414-437 (472)
3 d1r3jc_ f.14.1.1 (C:) Potassiu 9.2 2.1E+02 0.015 17.4 4.4 19 101-119 68-86 (103)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 9.1 1.7E+02 0.012 16.3 3.7 40 55-95 7-46 (57)
5 d1ppjc1 f.32.1.1 (C:261-379) M 8.3 93 0.0068 20.3 2.2 16 160-175 23-39 (119)
6 d1v54d_ f.23.1.1 (D:) Mitochon 7.5 2.4E+02 0.018 18.9 4.2 38 41-79 65-102 (144)
7 d2pila_ d.24.1.1 (A:) Pilin Gc 7.0 1.6E+02 0.012 18.5 3.1 16 151-166 11-26 (158)
8 d1ppjd2 f.23.11.1 (D:196-241) 6.8 1.4E+02 0.0099 16.0 2.0 6 43-48 2-7 (46)
9 d2a65a1 f.54.1.1 (A:5-513) Na( 6.0 6E+02 0.044 19.9 18.9 28 21-48 240-269 (509)
10 d1ciya3 f.1.3.1 (A:33-255) del 5.8 1.9E+02 0.014 20.6 3.1 27 148-174 6-32 (223)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=34.06 E-value=16 Score=20.92 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=18.0
Q ss_pred ccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039353 44 LRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAY 78 (239)
Q Consensus 44 m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~f 78 (239)
-++|+++.|.++... +.+=.+++|.+||..+
T Consensus 15 ~~KP~~~Ef~~ia~v----~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 15 LKKPTKDEYLAVAKV----TALGISLLGIIGYIIH 45 (56)
T ss_dssp EECCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 467888778775433 2233445677776543
No 2
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=9.29 E-value=4.1e+02 Score=20.86 Aligned_cols=24 Identities=13% Similarity=-0.118 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHccchHHHHHH
Q 039353 147 RGFLFAFNIFVAAAFPFIGDFVNL 170 (239)
Q Consensus 147 r~~~~~~~~~iA~~vP~~~~v~~l 170 (239)
.+++..+..++.+.+|.++.+++.
T Consensus 414 av~i~~~l~~~i~yiP~l~~vf~~ 437 (472)
T d1wpga4 414 SICLSMSLHFLILYVDPLPMIFKL 437 (472)
T ss_dssp HHHHHHHHHHHHHHSTTTHHHHTC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHcc
Confidence 333333334445678988877654
No 3
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.19 E-value=2.1e+02 Score=17.40 Aligned_cols=19 Identities=5% Similarity=-0.120 Sum_probs=7.4
Q ss_pred HHHHHHHHhhhhhhhhhcH
Q 039353 101 NSSVFLQSMVCQHVFISPI 119 (239)
Q Consensus 101 ~~~~~~~~~~s~pl~~~p~ 119 (239)
|+...+..+.+..+...+.
T Consensus 68 r~~~~~~~~~Gi~~~~~~~ 86 (103)
T d1r3jc_ 68 RCVAVVVMVAGITSFGLVT 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444443333333
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.13 E-value=1.7e+02 Score=16.26 Aligned_cols=40 Identities=8% Similarity=-0.069 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccccccccCcccChH
Q 039353 55 ALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKW 95 (239)
Q Consensus 55 ~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~~~~ 95 (239)
.+..+..+.+++-+..+..-|++=.+. +++=..++|+.-|
T Consensus 7 ~~~~~~~~~~i~i~~~s~~~y~~E~~~-~~~~f~sip~a~W 46 (57)
T d2h8pc1 7 AAGAATVLLVIVLLAGSYLAVLAERGA-PGAQLITYPRALW 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-CCccccccchhhh
Confidence 445555555555555666666665443 3333666665444
No 5
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.32 E-value=93 Score=20.28 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=9.1
Q ss_pred Hccc-hHHHHHHHhhhh
Q 039353 160 AFPF-IGDFVNLIGSFA 175 (239)
Q Consensus 160 ~vP~-~~~v~~liGa~~ 175 (239)
.+|| ++.++.+.+|+.
T Consensus 23 sipnK~gGvl~m~~si~ 39 (119)
T d1ppjc1 23 SIPNKLGGVLALAFSIL 39 (119)
T ss_dssp TCSSHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHH
Confidence 4664 566666555543
No 6
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.53 E-value=2.4e+02 Score=18.88 Aligned_cols=38 Identities=5% Similarity=-0.021 Sum_probs=19.2
Q ss_pred HhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 039353 41 QSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYG 79 (239)
Q Consensus 41 ~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG 79 (239)
..||..|+. .++.++..++..+.+-.+++...-..+++
T Consensus 65 ~ae~~~p~g-ewK~v~g~~~~~i~~s~~i~~~~r~~v~p 102 (144)
T d1v54d_ 65 FAEMNRSTN-EWKTVVGAAMFFIGFTALLLIWEKHYVYG 102 (144)
T ss_dssp HHHHTCCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cccccCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 457777764 46666655555444443343333333333
No 7
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=6.98 E-value=1.6e+02 Score=18.53 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=7.9
Q ss_pred HHHHHHHHHHccchHH
Q 039353 151 FAFNIFVAAAFPFIGD 166 (239)
Q Consensus 151 ~~~~~~iA~~vP~~~~ 166 (239)
.++..+.|+.+|.+..
T Consensus 11 aIIgILaaia~P~~~~ 26 (158)
T d2pila_ 11 AIVGILAAVALPAYQD 26 (158)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555565544
No 8
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.77 E-value=1.4e+02 Score=15.96 Aligned_cols=6 Identities=0% Similarity=-0.202 Sum_probs=2.6
Q ss_pred hccCch
Q 039353 43 TLRQPV 48 (239)
Q Consensus 43 ~m~~p~ 48 (239)
||.+++
T Consensus 2 e~d~RK 7 (46)
T d1ppjd2 2 EHDHRK 7 (46)
T ss_dssp THHHHH
T ss_pred chHHHH
Confidence 344443
No 9
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=5.95 E-value=6e+02 Score=19.94 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHh--cccchHHHHhhccCch
Q 039353 21 ALGAISAAVVAN--APCLLPEMQSTLRQPV 48 (239)
Q Consensus 21 ~~~~~~~~~faf--~~~~~~~i~~~m~~p~ 48 (239)
...+.+...|++ |.+.+...-+-+++.+
T Consensus 240 W~~A~~Q~ffSlgiG~G~~i~~~Sy~~~~~ 269 (509)
T d2a65a1 240 WIAAVGQIFFTLSLGFGAIITYASYVRKDQ 269 (509)
T ss_dssp HHHHHHHHHHHHTTTSSHHHHHHTTSCTTS
T ss_pred HHHHHHHHhhhhcccCCceeeehhhccchh
Confidence 467788999999 6888887777666554
No 10
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=5.78 E-value=1.9e+02 Score=20.60 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHccchHHHHHHHhhh
Q 039353 148 GFLFAFNIFVAAAFPFIGDFVNLIGSF 174 (239)
Q Consensus 148 ~~~~~~~~~iA~~vP~~~~v~~liGa~ 174 (239)
+.+-++.++++.++|..+.++++++-+
T Consensus 6 i~~~~~~~ll~~~iP~~g~~~~li~~l 32 (223)
T d1ciya3 6 ISLSLTQFLLSEFVPGAGFVLGLVDII 32 (223)
T ss_dssp HHHHHHHHHHHCCSSSHHHHHHHHHHT
T ss_pred hHHHHHHHHhhhcCCchHHHHHHHHHH
Confidence 345577778888899999888776544
Done!