BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>039355
MDFCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLID
TDPYKALLNPPKTAIFPTEYKPSDVNDNALEHPFGQPAISPLHPDWNYYSKIIRRNSKTY
YK

High Scoring Gene Products

Symbol, full name Information P value
AT2G36540 protein from Arabidopsis thaliana 1.2e-12
AT3G29760 protein from Arabidopsis thaliana 5.5e-10

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039355
        (122 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2044862 - symbol:AT2G36540 "AT2G36540" species...   168  1.2e-12   1
TAIR|locus:2091823 - symbol:AT3G29760 "AT3G29760" species...    90  5.5e-10   2


>TAIR|locus:2044862 [details] [associations]
            symbol:AT2G36540 "AT2G36540" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR004274 Pfam:PF03031 PROSITE:PS50969
            SMART:SM00577 EMBL:CP002685 GenomeReviews:CT485783_GR
            Gene3D:3.40.50.1000 InterPro:IPR023214 SUPFAM:SSF56784
            EMBL:AC006919 GO:GO:0016787 IPI:IPI00518305 PIR:G84781
            RefSeq:NP_181193.1 UniGene:At.37542 ProteinModelPortal:Q9SJQ4
            EnsemblPlants:AT2G36540.1 GeneID:818227 KEGG:ath:AT2G36540
            TAIR:At2g36540 HOGENOM:HOG000029061 InParanoid:Q9SJQ4 OMA:WSSACEL
            PhylomeDB:Q9SJQ4 ProtClustDB:CLSN2683935 Genevestigator:Q9SJQ4
            Uniprot:Q9SJQ4
        Length = 249

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 48/110 (43%), Positives = 59/110 (53%)

Query:     1 MDFCLERFEVGIWSSAREWYMN-NAL------NCIMVGL-----RGKLLFA--WHSILSV 46
             M FCLERFEVGIWSSA E   + N L       C   G      R K LF      +   
Sbjct:    96 MKFCLERFEVGIWSSACELVSSLNILIVTGPRECTDSGYKTLENRYKPLFFKDLSKVFKC 155

Query:    47 PVGQYSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNALEHPFGQ 96
               G +S+SNT+ ID +PYKAL NP  T +FP  Y  S++ DN L+ P G+
Sbjct:   156 FKG-FSASNTIFIDDEPYKALRNPDNTGLFPMSYDASNIKDNLLD-PEGE 203


>TAIR|locus:2091823 [details] [associations]
            symbol:AT3G29760 "AT3G29760" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR004274 Pfam:PF03031 PROSITE:PS50969
            SMART:SM00577 EMBL:CP002686 Gene3D:3.40.50.1000 InterPro:IPR023214
            SUPFAM:SSF56784 GO:GO:0016787 IPI:IPI00544063 RefSeq:NP_189619.2
            UniGene:At.36864 ProteinModelPortal:F4J488 SMR:F4J488 PRIDE:F4J488
            EnsemblPlants:AT3G29760.1 GeneID:822663 KEGG:ath:AT3G29760
            OMA:VKNNDSC Uniprot:F4J488
        Length = 465

 Score = 90 (36.7 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query:     3 FCLERFEVGIWSSAREWYMNNALNCIMVGLRGKLLFAW 40
             FC ++FEVGIWSS ++  +      ++  L+ KLLF W
Sbjct:   350 FCFDKFEVGIWSSRKQNNVVRITEFLLGDLKSKLLFCW 387

 Score = 84 (34.6 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query:    48 VGQYSSSNTLLIDTDPYKALLNPPKTAI 75
             +G Y+ +NT+L+D  PYKALLNP  + I
Sbjct:   427 MGDYNETNTVLLDDSPYKALLNPQYSLI 454


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.444    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      122       122   0.00091  102 3  11 22  0.37    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  160 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.45u 0.18s 12.63t   Elapsed:  00:00:01
  Total cpu time:  12.45u 0.18s 12.63t   Elapsed:  00:00:01
  Start:  Fri May 10 22:20:44 2013   End:  Fri May 10 22:20:45 2013

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