BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039355
         (122 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AQL|A Chain A, Crystal Structure Of Bovine Bile-Salt Activated Lipase
           Complexed With Taurocholate
 pdb|1AQL|B Chain B, Crystal Structure Of Bovine Bile-Salt Activated Lipase
           Complexed With Taurocholate
          Length = 532

 Score = 29.3 bits (64), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 7/83 (8%)

Query: 27  CIMVGLRGKLLFAWHSILSVPVGQYSSSNT---LLIDTDPYKALLNPPKTAIFPTEYKPS 83
            +  GLRG    A + + + P  Q SS  T    ++D +     L P K A+   ++K  
Sbjct: 352 TVTKGLRGA--NATYEVYTEPWAQDSSQETRKKTMVDLETDILFLIPTKIAV--AQHKSH 407

Query: 84  DVNDNALEHPFGQPAISPLHPDW 106
             + N   + F QP+  P++P W
Sbjct: 408 AKSANTYTYLFSQPSRMPIYPKW 430


>pdb|1PDJ|D Chain D, Fitting Of Gp27 Into Cryoem Reconstruction Of
           Bacteriophage T4 Baseplate
 pdb|1PDJ|E Chain E, Fitting Of Gp27 Into Cryoem Reconstruction Of
           Bacteriophage T4 Baseplate
 pdb|1PDJ|F Chain F, Fitting Of Gp27 Into Cryoem Reconstruction Of
           Bacteriophage T4 Baseplate
 pdb|1WTH|D Chain D, Crystal Structure Of Gp5-S351l Mutant And Gp27 Complex
 pdb|2Z6B|D Chain D, Crystal Structure Analysis Of (Gp27-Gp5)3 Conjugated With
           Fe(Iii) Protoporphyrin
          Length = 391

 Score = 29.3 bits (64), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 13  WSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKALLNPP 71
           W+S  E Y++      +     K +F W  I+ V +  Y     ++I+ +PY  ++  P
Sbjct: 162 WTSTFENYLSYVREVALAVGSDKFVFVWQDIMGVNMMDYD----MMINQEPYPMIVGEP 216


>pdb|2BCE|A Chain A, Cholesterol Esterase From Bos Taurus
          Length = 579

 Score = 29.3 bits (64), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 7/83 (8%)

Query: 27  CIMVGLRGKLLFAWHSILSVPVGQYSSSNT---LLIDTDPYKALLNPPKTAIFPTEYKPS 83
            +  GLRG    A + + + P  Q SS  T    ++D +     L P K A+   ++K  
Sbjct: 352 TVTKGLRGAQ--ATYEVYTEPWAQDSSQETRKKTMVDLETDILFLIPTKIAV--AQHKSH 407

Query: 84  DVNDNALEHPFGQPAISPLHPDW 106
             + N   + F QP+  P++P W
Sbjct: 408 AKSANTYTYLFSQPSRMPIYPKW 430


>pdb|1AKN|A Chain A, Structure Of Bile-salt Activated Lipase
          Length = 579

 Score = 28.5 bits (62), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 7/83 (8%)

Query: 27  CIMVGLRGKLLFAWHSILSVPVGQYSSSNT---LLIDTDPYKALLNPPKTAIFPTEYKPS 83
            +  GLRG    A + + + P  Q SS  T    ++D +     L P K A+   ++K  
Sbjct: 352 TVTKGLRGA--NATYEVYTEPWAQDSSQETRKKTMVDLETDILFLIPTKIAV--AQHKSH 407

Query: 84  DVNDNALEHPFGQPAISPLHPDW 106
             + N   + F QP+  P++P W
Sbjct: 408 AKSANTYTYLFSQPSRMPIYPKW 430


>pdb|3A25|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With
           Adomet
 pdb|3A26|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With
           Mesado
          Length = 301

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 37  LFAWHSILSVPVGQYSSSNTLLIDTDPY 64
           +FA    LS+P+  Y  +  + I+ DPY
Sbjct: 155 MFAGIGHLSLPIAVYGKAKVIAIEKDPY 182


>pdb|1K28|D Chain D, The Structure Of The Bacteriophage T4 Cell-Puncturing
           Device
          Length = 391

 Score = 25.8 bits (55), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 13  WSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKALLNPP 71
           W+S  E Y++      +     K +F W  I  V    Y       I+ +PY  ++  P
Sbjct: 162 WTSTFENYLSYVREVALAVGSDKFVFVWQDIXGVNXXDYDXX----INQEPYPXIVGEP 216


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,242,390
Number of Sequences: 62578
Number of extensions: 166653
Number of successful extensions: 315
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 6
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)