BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039355
         (122 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8AEE6|MDTB_CITK8 Multidrug resistance protein MdtB OS=Citrobacter koseri (strain
           ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mdtB PE=3 SV=1
          Length = 1040

 Score = 29.3 bits (64), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 87  DNALEHPFGQPAISPLHPDWNYYSKIIRRNSKT 119
           DNAL + FGQ  IS ++   N Y  ++  N+ T
Sbjct: 738 DNALYNAFGQRLISTIYTQANQYRVVLEHNTDT 770


>sp|P17172|VG27_BPT4 Baseplate structural protein Gp27 OS=Enterobacteria phage T4 GN=27
           PE=1 SV=4
          Length = 391

 Score = 29.3 bits (64), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 13  WSSAREWYMNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKALLNPP 71
           W+S  E Y++      +     K +F W  I+ V +  Y     ++I+ +PY  ++  P
Sbjct: 162 WTSTFENYLSYVREVALAVGSDKFVFVWQDIMGVNMMDYD----MMINQEPYPMIVGEP 216


>sp|Q9CZ62|CEP97_MOUSE Centrosomal protein of 97 kDa OS=Mus musculus GN=Cep97 PE=2 SV=1
          Length = 856

 Score = 29.3 bits (64), Expect = 8.2,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 38  FAWHSILSVPVGQYSSSNTLLI---DTDPYKALLNPPKTAIFPTEYKP-SDVNDNAL--E 91
           F W+ + SV   Q +    L     D  P  + L  PK  +FP    P SD + + L  E
Sbjct: 619 FLWNEVRSVQAWQQTVEQRLASWPPDVPPISSTLASPKPPLFPHHQDPSSDQSSDWLVAE 678

Query: 92  HPFGQPAISPLHPDWNYYSKIIRR 115
               Q   +P  PD  ++S +  +
Sbjct: 679 DEAAQGRSAPDFPDSGFHSSLTEQ 702


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,734,400
Number of Sequences: 539616
Number of extensions: 2100178
Number of successful extensions: 3567
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3564
Number of HSP's gapped (non-prelim): 11
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)