Query 039355
Match_columns 122
No_of_seqs 106 out of 111
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 08:55:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02245 HAD_IIID1 HAD-superf 99.8 7.2E-21 1.6E-25 148.8 4.1 87 1-90 54-168 (195)
2 PF03031 NIF: NLI interacting 99.5 4.5E-15 9.9E-20 108.2 2.3 81 1-90 45-142 (159)
3 TIGR02251 HIF-SF_euk Dullard-l 99.4 5E-14 1.1E-18 105.5 3.6 80 1-90 51-147 (162)
4 smart00577 CPDc catalytic doma 98.9 1.7E-09 3.7E-14 79.2 4.5 75 1-84 54-145 (148)
5 TIGR02250 FCP1_euk FCP1-like p 98.8 5E-09 1.1E-13 78.7 2.9 71 1-82 67-155 (156)
6 KOG1605 TFIIF-interacting CTD 98.5 1E-08 2.2E-13 84.0 -0.8 84 5-90 144-236 (262)
7 COG5190 FCP1 TFIIF-interacting 94.4 0.037 8.1E-07 48.0 3.2 81 3-90 263-356 (390)
8 KOG2832 TFIIF-interacting CTD 91.3 0.27 5.8E-06 42.9 4.0 83 1-90 223-318 (393)
9 KOG0323 TFIIF-interacting CTD 88.0 0.61 1.3E-05 43.0 3.8 79 1-83 210-299 (635)
10 PF10929 DUF2811: Protein of u 60.4 5 0.00011 26.4 1.2 17 101-117 19-35 (57)
11 PF07803 GSG-1: GSG1-like prot 55.9 3.1 6.7E-05 31.0 -0.5 26 2-28 80-106 (118)
12 KOG3141 Mitochondrial/chloropl 42.7 29 0.00063 29.7 3.2 58 41-100 245-308 (310)
13 COG0774 LpxC UDP-3-O-acyl-N-ac 35.7 13 0.00027 31.7 0.1 40 38-81 194-236 (300)
14 PF06941 NT5C: 5' nucleotidase 31.7 27 0.00058 26.1 1.3 26 57-82 139-167 (191)
15 KOG3441 Mitochondrial ribosoma 25.6 43 0.00093 25.6 1.4 23 49-76 100-122 (149)
16 PF03331 LpxC: UDP-3-O-acyl N- 20.1 25 0.00055 29.3 -0.8 31 38-71 191-224 (277)
No 1
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.82 E-value=7.2e-21 Score=148.76 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=71.9
Q ss_pred CchhhccceEEEEccCCccc--------------------ccccccccc---cCcCceeeEEEeccccccc-C-CCCCcc
Q 039355 1 MDFCLERFEVGIWSSAREWY--------------------MNNALNCIM---VGLRGKLLFAWHSILSVPV-G-QYSSSN 55 (122)
Q Consensus 1 L~fc~~~F~V~VWSSa~~~n--------------------vw~~~~ct~---~~~~~k~~~~K~L~~vW~~-g-~~~~sN 55 (122)
|++|+++|+|+|||||++.| +| ++|.. ..++.+..++|+|+.+|++ | .|+++|
T Consensus 54 L~~~~~~feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~l--d~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~n 131 (195)
T TIGR02245 54 LTSAYEDYDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLL--DSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKN 131 (195)
T ss_pred HHHHHhCCEEEEEecCCHHHHHHHHHHhcccCCccceEEEEe--ccccceeeEeeccCcEEEeecHHhhhhcccCCCccc
Confidence 67999999999999998877 44 44532 2344666789999999985 3 479999
Q ss_pred eEEEeCCcchhhcCCCCeeecCCCCCCC---CCCCCcc
Q 039355 56 TLLIDTDPYKALLNPPKTAIFPTEYKPS---DVNDNAL 90 (122)
Q Consensus 56 TlLIDDSP~Ka~~nP~n~aI~p~~y~~~---~~~D~~L 90 (122)
||||||+|+++++||.| +|.+.+|.++ +.+|.+|
T Consensus 132 tiiVDd~p~~~~~~P~N-~i~I~~f~~~~~~~~~D~eL 168 (195)
T TIGR02245 132 TIMFDDLRRNFLMNPQN-GLKIRPFKKAHANRGTDQEL 168 (195)
T ss_pred EEEEeCCHHHHhcCCCC-ccccCCccccCCCCcccHHH
Confidence 99999999999999987 9999999975 4678888
No 2
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.51 E-value=4.5e-15 Score=108.16 Aligned_cols=81 Identities=23% Similarity=0.287 Sum_probs=55.7
Q ss_pred CchhhccceEEEEccCCccc-----------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCCc
Q 039355 1 MDFCLERFEVGIWSSAREWY-----------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDP 63 (122)
Q Consensus 1 L~fc~~~F~V~VWSSa~~~n-----------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP 63 (122)
|++|.++|+|+|||++++.| +|.|++|+.. .+. ..|+|+++ +.+.+|||||||+|
T Consensus 45 L~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~---~~~-~~KdL~~l----~~~~~~vvivDD~~ 116 (159)
T PF03031_consen 45 LEELSKHYEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRDDCTFD---KGS-YIKDLSKL----GRDLDNVVIVDDSP 116 (159)
T ss_dssp HHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSEEE---TTE-EE--GGGS----SS-GGGEEEEES-G
T ss_pred HHHHHHhceEEEEEeehhhhhhHHHHhhhhhcccccccccccccccc---ccc-cccchHHH----hhccccEEEEeCCH
Confidence 46789999999999999999 7778888732 222 25999999 35899999999999
Q ss_pred chhhcCCCCeeecCCCCCCCCCCCCcc
Q 039355 64 YKALLNPPKTAIFPTEYKPSDVNDNAL 90 (122)
Q Consensus 64 ~Ka~~nP~n~aI~p~~y~~~~~~D~~L 90 (122)
.++..||.| +|.+.+|.++..+|.+|
T Consensus 117 ~~~~~~~~N-~i~v~~f~~~~~~D~~L 142 (159)
T PF03031_consen 117 RKWALQPDN-GIPVPPFFGDTPNDREL 142 (159)
T ss_dssp GGGTTSGGG-EEE----SSCHTT--HH
T ss_pred HHeeccCCc-eEEeccccCCCcchhHH
Confidence 999999876 88888999964568887
No 3
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.45 E-value=5e-14 Score=105.47 Aligned_cols=80 Identities=24% Similarity=0.321 Sum_probs=69.2
Q ss_pred CchhhccceEEEEccCCccc-----------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCCc
Q 039355 1 MDFCLERFEVGIWSSAREWY-----------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDP 63 (122)
Q Consensus 1 L~fc~~~F~V~VWSSa~~~n-----------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP 63 (122)
|+.|.++|+|+||||+.+.| ++.|++|+.. ++.+.|+|++++ .+.+++|+|||+|
T Consensus 51 L~~l~~~yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~----~~~~~K~L~~l~----~~~~~vIiVDD~~ 122 (162)
T TIGR02251 51 LERVSKWYELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFT----NGKYVKDLSLVG----KDLSKVIIIDNSP 122 (162)
T ss_pred HHHHHhcCEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEe----CCCEEeEchhcC----CChhhEEEEeCCh
Confidence 56789999999999999998 7788888764 333799999986 5789999999999
Q ss_pred chhhcCCCCeeecCCCCCCCCCCCCcc
Q 039355 64 YKALLNPPKTAIFPTEYKPSDVNDNAL 90 (122)
Q Consensus 64 ~Ka~~nP~n~aI~p~~y~~~~~~D~~L 90 (122)
..+..+|.| +|.+.+|.+ +.+|++|
T Consensus 123 ~~~~~~~~N-gI~i~~f~~-~~~D~~L 147 (162)
T TIGR02251 123 YSYSLQPDN-AIPIKSWFG-DPNDTEL 147 (162)
T ss_pred hhhccCccC-EeecCCCCC-CCCHHHH
Confidence 999999986 999999998 5579888
No 4
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.90 E-value=1.7e-09 Score=79.20 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=60.7
Q ss_pred CchhhccceEEEEccCCccc-----------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCCc
Q 039355 1 MDFCLERFEVGIWSSAREWY-----------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDP 63 (122)
Q Consensus 1 L~fc~~~F~V~VWSSa~~~n-----------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP 63 (122)
|++|.++|.+|||||+...+ |+++++|.. .||.++|.|++++ -+++++|+|||+|
T Consensus 54 L~~L~~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~----~KP~~~k~l~~l~----~~p~~~i~i~Ds~ 125 (148)
T smart00577 54 LKRASELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVF----VKGKYVKDLSLLG----RDLSNVIIIDDSP 125 (148)
T ss_pred HHHHHhccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccc----cCCeEeecHHHcC----CChhcEEEEECCH
Confidence 46778899999999999998 233333322 6777999999885 4789999999999
Q ss_pred chhhcCCCCeeecCCCCCCCC
Q 039355 64 YKALLNPPKTAIFPTEYKPSD 84 (122)
Q Consensus 64 ~Ka~~nP~n~aI~p~~y~~~~ 84 (122)
.....+|.| +|...+|.++.
T Consensus 126 ~~~~aa~~n-gI~i~~f~~~~ 145 (148)
T smart00577 126 DSWPFHPEN-LIPIKPWFGDP 145 (148)
T ss_pred HHhhcCccC-EEEecCcCCCC
Confidence 999999875 99999999954
No 5
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.75 E-value=5e-09 Score=78.75 Aligned_cols=71 Identities=10% Similarity=0.012 Sum_probs=57.1
Q ss_pred CchhhccceEEEEccCCccc------------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCC
Q 039355 1 MDFCLERFEVGIWSSAREWY------------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTD 62 (122)
Q Consensus 1 L~fc~~~F~V~VWSSa~~~n------------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDS 62 (122)
|+.|.++|+++|+|++.+.+ +.++++|+ ....|+|+.++ +.+.+++|||||+
T Consensus 67 L~~l~~~yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~-------~~~~KdL~~i~---~~d~~~vvivDd~ 136 (156)
T TIGR02250 67 LKEASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESG-------SPHTKSLLRLF---PADESMVVIIDDR 136 (156)
T ss_pred HHHHHhhcEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCC-------CCccccHHHHc---CCCcccEEEEeCC
Confidence 35677899999999999988 44555553 23479997776 4578999999999
Q ss_pred cchhhcCCCCeeecCCCCCC
Q 039355 63 PYKALLNPPKTAIFPTEYKP 82 (122)
Q Consensus 63 P~Ka~~nP~n~aI~p~~y~~ 82 (122)
|.....||.| +|...+|.+
T Consensus 137 ~~~~~~~~~N-~i~i~~~~~ 155 (156)
T TIGR02250 137 EDVWPWHKRN-LIQIEPYNY 155 (156)
T ss_pred HHHhhcCccC-EEEeCCccc
Confidence 9999999986 998889865
No 6
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=98.54 E-value=1e-08 Score=83.96 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=60.0
Q ss_pred hccceEEEEccCCccc------ccccccc-cccCcCceeeEEEeccccccc--CCCCCcceEEEeCCcchhhcCCCCeee
Q 039355 5 LERFEVGIWSSAREWY------MNNALNC-IMVGLRGKLLFAWHSILSVPV--GQYSSSNTLLIDTDPYKALLNPPKTAI 75 (122)
Q Consensus 5 ~~~F~V~VWSSa~~~n------vw~~~~c-t~~~~~~k~~~~K~L~~vW~~--g~~~~sNTlLIDDSP~Ka~~nP~n~aI 75 (122)
-+.|+++|-++..+.| +|++.+- ....+-....++++..-+|+. .+.+.+|||||||||..++.||.| ||
T Consensus 144 s~~~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~N-gI 222 (262)
T KOG1605|consen 144 SKWYELVLFTASLEVYADPLLDILDPDRKIISHRLYRDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPEN-GI 222 (262)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHccCCCCeeeeeecccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccC-CC
Confidence 3567788888888888 5665222 222233444456666666652 244999999999999999999976 99
Q ss_pred cCCCCCCCCCCCCcc
Q 039355 76 FPTEYKPSDVNDNAL 90 (122)
Q Consensus 76 ~p~~y~~~~~~D~~L 90 (122)
.+.+|..+. .|.||
T Consensus 223 pI~sw~~d~-~D~eL 236 (262)
T KOG1605|consen 223 PIKSWFDDP-TDTEL 236 (262)
T ss_pred cccccccCC-ChHHH
Confidence 999999854 59998
No 7
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=94.39 E-value=0.037 Score=48.03 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=57.8
Q ss_pred hhhccceEEEEccCCccc------ccccccccc------cCcC-ceeeEEEecccccccCCCCCcceEEEeCCcchhhcC
Q 039355 3 FCLERFEVGIWSSAREWY------MNNALNCIM------VGLR-GKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKALLN 69 (122)
Q Consensus 3 fc~~~F~V~VWSSa~~~n------vw~~~~ct~------~~~~-~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP~Ka~~n 69 (122)
++-+-|+|-+||+....+ +.+..+... +... ... +.|||..+- .+.+.|||||.+|+=...+
T Consensus 263 ~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k~~~~~lfr~sc~~~~G~-~ikDis~i~----r~l~~viiId~~p~SY~~~ 337 (390)
T COG5190 263 KLSKIHELVYFTASVKRYADPVLDILDSDKVFSHRLFRESCVSYLGV-YIKDISKIG----RSLDKVIIIDNSPASYEFH 337 (390)
T ss_pred hhhhhEEEEEEecchhhhcchHHHhccccceeehhhhcccceeccCc-hhhhHHhhc----cCCCceEEeeCChhhhhhC
Confidence 344669999999998888 333333110 1111 233 688887763 7789999999999999999
Q ss_pred CCCeeecCCCCCCCCCCCCcc
Q 039355 70 PPKTAIFPTEYKPSDVNDNAL 90 (122)
Q Consensus 70 P~n~aI~p~~y~~~~~~D~~L 90 (122)
|-| +|...++..+- .|++|
T Consensus 338 p~~-~i~i~~W~~d~-~d~el 356 (390)
T COG5190 338 PEN-AIPIEKWISDE-HDDEL 356 (390)
T ss_pred ccc-eeccCcccccc-cchhh
Confidence 975 88888999863 46666
No 8
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=91.34 E-value=0.27 Score=42.95 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=61.7
Q ss_pred CchhhccceEEEEccCCccc------cccccccc-------ccCcCceeeEEEecccccccCCCCCcceEEEeCCcchhh
Q 039355 1 MDFCLERFEVGIWSSAREWY------MNNALNCI-------MVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPYKAL 67 (122)
Q Consensus 1 L~fc~~~F~V~VWSSa~~~n------vw~~~~ct-------~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP~Ka~ 67 (122)
|..|-..|++.|.||-+.-+ -|+-..|. .+.+.+.+. +|||.++=+ +.+..|.||=.++-..
T Consensus 223 L~~~a~~yEIVi~sse~gmt~~pl~d~lDP~g~IsYkLfr~~t~y~~G~H-vKdls~LNR----dl~kVivVd~d~~~~~ 297 (393)
T KOG2832|consen 223 LGHLAKYYEIVVYSSEQGMTVFPLLDALDPKGYISYKLFRGATKYEEGHH-VKDLSKLNR----DLQKVIVVDFDANSYK 297 (393)
T ss_pred HHhhcccceEEEEecCCccchhhhHhhcCCcceEEEEEecCcccccCccc-hhhhhhhcc----ccceeEEEEccccccc
Confidence 35678899999999988877 34444443 233333222 899988854 4688999999999999
Q ss_pred cCCCCeeecCCCCCCCCCCCCcc
Q 039355 68 LNPPKTAIFPTEYKPSDVNDNAL 90 (122)
Q Consensus 68 ~nP~n~aI~p~~y~~~~~~D~~L 90 (122)
++|.| .|-.+++.+ +.+|..|
T Consensus 298 l~P~N-~l~l~~W~G-n~dDt~L 318 (393)
T KOG2832|consen 298 LQPEN-MLPLEPWSG-NDDDTSL 318 (393)
T ss_pred cCccc-ccccCcCCC-Ccccchh
Confidence 99987 777789999 5568777
No 9
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=87.97 E-value=0.61 Score=42.96 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=54.3
Q ss_pred CchhhccceEEEEccCCccc---ccccccccccCcCceeeEEE--------ecccccccCCCCCcceEEEeCCcchhhcC
Q 039355 1 MDFCLERFEVGIWSSAREWY---MNNALNCIMVGLRGKLLFAW--------HSILSVPVGQYSSSNTLLIDTDPYKALLN 69 (122)
Q Consensus 1 L~fc~~~F~V~VWSSa~~~n---vw~~~~ct~~~~~~k~~~~K--------~L~~vW~~g~~~~sNTlLIDDSP~Ka~~n 69 (122)
|+++-+.|++-|.+-+...| ||...+=+.--|.++++..+ +|.++. .=..++.+||||++...-..
T Consensus 210 L~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~~~kt~dL~~~~---p~g~smvvIIDDr~dVW~~~ 286 (635)
T KOG0323|consen 210 LKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESPFFKTLDLVLLF---PCGDSMVVIIDDRSDVWPDH 286 (635)
T ss_pred HHHHHhhceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCCcccccccccCC---CCCCccEEEEeCccccccCC
Confidence 46677899999999999999 44443333333334444433 333333 34578899999999999888
Q ss_pred CCCeeecCCCCCCC
Q 039355 70 PPKTAIFPTEYKPS 83 (122)
Q Consensus 70 P~n~aI~p~~y~~~ 83 (122)
+.| +|.+.+|.+-
T Consensus 287 ~~n-LI~i~~y~yF 299 (635)
T KOG0323|consen 287 KRN-LIQIAPYPYF 299 (635)
T ss_pred Ccc-eEEeeeeecc
Confidence 874 8877777663
No 10
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=60.37 E-value=5 Score=26.39 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=14.5
Q ss_pred CCCCCchhhHHHHhhhc
Q 039355 101 PLHPDWNYYSKIIRRNS 117 (122)
Q Consensus 101 ~~~~~w~~y~~v~~~~~ 117 (122)
++||+|+=|+-+..+++
T Consensus 19 e~hP~WDQ~Rl~~aALa 35 (57)
T PF10929_consen 19 ETHPNWDQYRLFQAALA 35 (57)
T ss_pred HcCCCchHHHHHHHHHH
Confidence 68999999999877765
No 11
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=55.94 E-value=3.1 Score=31.04 Aligned_cols=26 Identities=31% Similarity=0.687 Sum_probs=18.1
Q ss_pred chhhccceEEEEccCCccccccc-cccc
Q 039355 2 DFCLERFEVGIWSSAREWYMNNA-LNCI 28 (122)
Q Consensus 2 ~fc~~~F~V~VWSSa~~~nvw~~-~~ct 28 (122)
||+|.+|++|||-|-.+ ++-+. ++|.
T Consensus 80 kF~fr~FHtG~W~SCEE-~~~~~gekCR 106 (118)
T PF07803_consen 80 KFIFRYFHTGIWLSCEE-NIEGPGEKCR 106 (118)
T ss_pred eeehhhhhcchhhhhhh-hccCCcccee
Confidence 69999999999998544 33332 3553
No 12
>KOG3141 consensus Mitochondrial/chloroplast ribosomal protein L3 [Translation, ribosomal structure and biogenesis]
Probab=42.66 E-value=29 Score=29.68 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=42.9
Q ss_pred ecccccccCC--CCCcceEEEeCCcchhhcCCCCeeecCCCCCCCCCCCCcc----CCCCCCCCCC
Q 039355 41 HSILSVPVGQ--YSSSNTLLIDTDPYKALLNPPKTAIFPTEYKPSDVNDNAL----EHPFGQPAIS 100 (122)
Q Consensus 41 ~L~~vW~~g~--~~~sNTlLIDDSP~Ka~~nP~n~aI~p~~y~~~~~~D~~L----~~pfgq~~i~ 100 (122)
+++.+|=+|. =...|+|.|-|+-.+....+-| . ||..|-..+.+-++| -|-|+-|.|+
T Consensus 245 ~~nvi~VkGsVpG~~g~~V~I~Da~~~~~~i~k~-p-fpt~~~~~~ed~~e~~~~~~~~~~s~si~ 308 (310)
T KOG3141|consen 245 ELNVIWVKGSVPGPKGNLVKIKDAILPTVDIPKN-P-FPTYEGTIDEDPNELFSEKVFRFTSPSIT 308 (310)
T ss_pred CceEEEEecccCCCCCCEEEEEecccccCCcccC-C-CCcccCCCCCChhHhcchhhhccCCCcee
Confidence 4566777652 3467999999999999988865 4 885444446666777 7889988886
No 13
>COG0774 LpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]
Probab=35.68 E-value=13 Score=31.74 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=29.3
Q ss_pred EEEecccccccC---CCCCcceEEEeCCcchhhcCCCCeeecCCCCC
Q 039355 38 FAWHSILSVPVG---QYSSSNTLLIDTDPYKALLNPPKTAIFPTEYK 81 (122)
Q Consensus 38 ~~K~L~~vW~~g---~~~~sNTlLIDDSP~Ka~~nP~n~aI~p~~y~ 81 (122)
|.+|++.+|..| +=+.+|+|+||| ++. .||.- +=||.+|-
T Consensus 194 F~~dvE~L~~~gLalGGSleNaiVidd--~~v-lN~~g-LRf~dEfV 236 (300)
T COG0774 194 FMRDVEYLRSKGLALGGSLENAIVIDD--DRV-LNPEG-LRFEDEFV 236 (300)
T ss_pred hHHHHHHHHHcCccccccccceEEECC--Cce-eCCcc-ccCCCcch
Confidence 577888899863 678899999999 444 56653 66666654
No 14
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=31.73 E-value=27 Score=26.11 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=15.7
Q ss_pred EEEeCCcchhhc--CCCC-eeecCCCCCC
Q 039355 57 LLIDTDPYKALL--NPPK-TAIFPTEYKP 82 (122)
Q Consensus 57 lLIDDSP~Ka~~--nP~n-~aI~p~~y~~ 82 (122)
|||||+|.-+.. +++- ..+|..||.-
T Consensus 139 vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr 167 (191)
T PF06941_consen 139 VLIDDRPHNLEQFANAGIPVILFDQPYNR 167 (191)
T ss_dssp EEEESSSHHHSS-SSESSEEEEE--GGGT
T ss_pred EEecCChHHHHhccCCCceEEEEcCCCCC
Confidence 999999998764 3321 3556566543
No 15
>KOG3441 consensus Mitochondrial ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=25.59 E-value=43 Score=25.62 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=17.0
Q ss_pred CCCCCcceEEEeCCcchhhcCCCCeeec
Q 039355 49 GQYSSSNTLLIDTDPYKALLNPPKTAIF 76 (122)
Q Consensus 49 g~~~~sNTlLIDDSP~Ka~~nP~n~aI~ 76 (122)
+.|++.|.+||||.- ||--|.|.
T Consensus 100 P~fDsNniVLiddnG-----nPlGtRI~ 122 (149)
T KOG3441|consen 100 PVFDSNNIVLIDDNG-----NPLGTRIT 122 (149)
T ss_pred cccCCCcEEEECCCC-----CcccceEe
Confidence 479999999999953 55545553
No 16
>PF03331 LpxC: UDP-3-O-acyl N-acetylglycosamine deacetylase; InterPro: IPR004463 UDP-3-O-N-acetylglucosamine deacetylases are zinc-dependent metalloamidases that catalyse the second and committed step in the biosynthesis of lipid A. Lipid A anchors lipopolysaccharide (the major constituent of the outer membrane) into the membrane in Gram negative bacteria. LpxC shows no homology to mammalian metalloamidases and is essential for cell viability, making it an important target for the development of novel antibacterial compounds []. The structure of UDP-3-O-N-acetylglucosamine deacetylase (LpxC) from Aquifex aeolicus has a two-layer alpha/beta structure similar to that of the second domain of ribosomal protein S5, only in LpxC there is a duplication giving two structural repeats of this fold, each repeat being elaborated with additional structures forming the active site. LpxC contains a zinc-binding motif, which resides at the base of an active site cleft and adjacent to a hydrophobic tunnel occupied by a fatty acid []. This tunnel accounts for the specificity of LpxC toward substrates and inhibitors bearing appropriately positioned 3-O-fatty acid substituents []. This entry represents the UDP-3-O-N-acetylglucosamine deacetylase family of proteins.; GO: 0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity, 0009245 lipid A biosynthetic process; PDB: 2VES_C 3U1Y_A 3P3E_A 3UHM_A 1XXE_A 2IER_A 1YH8_B 2GO4_A 2O3Z_B 2GO3_B ....
Probab=20.06 E-value=25 Score=29.28 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=21.4
Q ss_pred EEEecccccccC---CCCCcceEEEeCCcchhhcCCC
Q 039355 38 FAWHSILSVPVG---QYSSSNTLLIDTDPYKALLNPP 71 (122)
Q Consensus 38 ~~K~L~~vW~~g---~~~~sNTlLIDDSP~Ka~~nP~ 71 (122)
|+++++.++..| +=+.+|+|+||+ ....||+
T Consensus 191 f~~eve~L~~~GL~~Ggsl~Naiv~~~---~~~ln~~ 224 (277)
T PF03331_consen 191 FLEEVEYLRKRGLAKGGSLDNAIVIDD---DGVLNPP 224 (277)
T ss_dssp EHHHHHHHHHTT-STT-STTTCEEE-S---SSBSSTT
T ss_pred cHHHHHHHHHCCCcccccchheEEecc---ccccCcc
Confidence 567778888753 679999999999 3345665
Done!