Query 039355
Match_columns 122
No_of_seqs 106 out of 111
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 15:00:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3shq_A UBLCP1; phosphatase, hy 99.6 1.6E-16 5.6E-21 130.0 2.5 89 1-90 173-286 (320)
2 3qle_A TIM50P; chaperone, mito 99.4 5E-14 1.7E-18 109.1 3.7 79 1-90 68-163 (204)
3 2ght_A Carboxy-terminal domain 99.3 9.9E-13 3.4E-17 98.1 4.4 80 1-90 64-159 (181)
4 2hhl_A CTD small phosphatase-l 99.3 2.3E-12 8E-17 97.7 3.9 80 1-90 77-172 (195)
5 3ef0_A RNA polymerase II subun 98.8 2.1E-09 7.2E-14 89.5 4.6 71 1-83 84-172 (372)
6 3ef1_A RNA polymerase II subun 98.7 7.2E-09 2.5E-13 88.6 4.6 78 1-90 92-191 (442)
7 1ckk_B Camkk, protein (RAT Ca2 29.7 19 0.00065 19.4 0.9 8 91-98 19-26 (26)
8 3uhm_A UDP-3-O-[3-hydroxymyris 19.3 21 0.00073 29.0 -0.2 31 38-71 193-226 (299)
9 3p3g_A UDP-3-O-[3-hydroxymyris 19.1 21 0.00073 29.0 -0.3 31 38-71 194-227 (300)
10 1iq5_B Ca2+/calmodulin depende 17.9 39 0.0013 18.3 0.7 8 91-98 19-26 (27)
No 1
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.60 E-value=1.6e-16 Score=129.97 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=72.8
Q ss_pred CchhhccceEEEEccCCccc---------c---------cccccccc---cCcCceeeEEEeccccccc-CCCCCcceEE
Q 039355 1 MDFCLERFEVGIWSSAREWY---------M---------NNALNCIM---VGLRGKLLFAWHSILSVPV-GQYSSSNTLL 58 (122)
Q Consensus 1 L~fc~~~F~V~VWSSa~~~n---------v---------w~~~~ct~---~~~~~k~~~~K~L~~vW~~-g~~~~sNTlL 58 (122)
|++|.++|+|+||||+.+.| . .-+++|+. .....+..++|+|+++|.+ ++++++||||
T Consensus 173 L~~l~~~yeivIfTas~~~ya~~vld~Ld~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~vKdLs~Lw~~~p~rdl~~tIi 252 (320)
T 3shq_A 173 LTSAYEDYDIVIWSATSMRWIEEKMRLLGVASNDNYKVMFYLDSTAMISVHVPERGVVDVKPLGVIWALYKQYNSSNTIM 252 (320)
T ss_dssp HHHHHHHEEEEEECSSCHHHHHHHHHHTTCTTCSSCCCCEEECGGGCEEEEETTTEEEEECCHHHHHHHCTTCCGGGEEE
T ss_pred HHHHHhCCEEEEEcCCcHHHHHHHHHHhCCCCCcceeEEEEEcCCccccccccCCCCEEEEEhHHhhcccCCCChhHEEE
Confidence 57899999999999999999 1 12455542 2234466789999999975 4699999999
Q ss_pred EeCCcchhhcCCCCeeecCCCCCCC---CCCCCcc
Q 039355 59 IDTDPYKALLNPPKTAIFPTEYKPS---DVNDNAL 90 (122)
Q Consensus 59 IDDSP~Ka~~nP~n~aI~p~~y~~~---~~~D~~L 90 (122)
|||+|+++.+||.| +|.+.+|.++ +.+|++|
T Consensus 253 IDdsp~~~~~~p~N-gI~I~~~~~~~~~~~~D~eL 286 (320)
T 3shq_A 253 FDDIRRNFLMNPKS-GLKIRPFRQAHLNRGTDTEL 286 (320)
T ss_dssp EESCGGGGTTSGGG-EEECCCCCCHHHHTTTCCHH
T ss_pred EeCChHHhccCcCc-eEEeCeEcCCCCCCCccHHH
Confidence 99999999999976 9999999885 3679988
No 2
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}
Probab=99.43 E-value=5e-14 Score=109.07 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=66.9
Q ss_pred CchhhccceEEEEccCCccc-----------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCCc
Q 039355 1 MDFCLERFEVGIWSSAREWY-----------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDP 63 (122)
Q Consensus 1 L~fc~~~F~V~VWSSa~~~n-----------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP 63 (122)
|++|.++|+|+||||+.+.| +|.|++|+.. ...++|+|+++. .+++|||||||+|
T Consensus 68 L~~l~~~yeivI~Tas~~~ya~~vl~~LDp~~~~f~~rl~R~~c~~~----~g~y~KdL~~Lg----rdl~~vIiIDDsp 139 (204)
T 3qle_A 68 LGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCVYK----DGVHIKDLSKLN----RDLSKVIIIDTDP 139 (204)
T ss_dssp HHHHTTTEEEEEECSSCHHHHHHHHHHTSTTCSSEEEEECGGGSEEE----TTEEECCGGGSC----SCGGGEEEEESCT
T ss_pred HHHHHhCCEEEEEcCCcHHHHHHHHHHhCCCCCeEEEEEEecceeEE----CCeeeecHHHhC----CChHHEEEEECCH
Confidence 57889999999999999888 6778888752 234799999994 5789999999999
Q ss_pred chhhcCCCCeeecCCCCCCCCCCCCcc
Q 039355 64 YKALLNPPKTAIFPTEYKPSDVNDNAL 90 (122)
Q Consensus 64 ~Ka~~nP~n~aI~p~~y~~~~~~D~~L 90 (122)
.....||.| +|.+.+|.++ .|++|
T Consensus 140 ~~~~~~p~N-~I~I~~~~~~--~D~eL 163 (204)
T 3qle_A 140 NSYKLQPEN-AIPMEPWNGE--ADDKL 163 (204)
T ss_dssp TTTTTCGGG-EEECCCCCSS--CCCHH
T ss_pred HHHhhCccC-ceEeeeECCC--CChhH
Confidence 999999976 9999999873 47788
No 3
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A
Probab=99.32 E-value=9.9e-13 Score=98.10 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=68.1
Q ss_pred CchhhccceEEEEccCCccc----------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCCcc
Q 039355 1 MDFCLERFEVGIWSSAREWY----------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPY 64 (122)
Q Consensus 1 L~fc~~~F~V~VWSSa~~~n----------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP~ 64 (122)
|++|.++|+++||||+.+.+ ++.+++|+. .|..++|+|+++ +.++++||+|||||.
T Consensus 64 L~~l~~~~~i~I~T~~~~~~a~~vl~~ld~~~~f~~~~~rd~~~~----~k~~~~k~L~~L----g~~~~~~vivdDs~~ 135 (181)
T 2ght_A 64 LQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVF----HRGNYVKDLSRL----GRDLRRVLILDNSPA 135 (181)
T ss_dssp HHHHHHHSEEEEECSSCHHHHHHHHHHHCTTCCEEEEECGGGSEE----ETTEEECCGGGT----CSCGGGEEEECSCGG
T ss_pred HHHHHhCCCEEEEcCCCHHHHHHHHHHHCCCCcEEEEEeccCcee----cCCcEeccHHHh----CCCcceEEEEeCCHH
Confidence 46788899999999999988 666777765 345689999988 478999999999999
Q ss_pred hhhcCCCCeeecCCCCCCCCCCCCcc
Q 039355 65 KALLNPPKTAIFPTEYKPSDVNDNAL 90 (122)
Q Consensus 65 Ka~~nP~n~aI~p~~y~~~~~~D~~L 90 (122)
....+|.| +|.+.+|.+ +.+|++|
T Consensus 136 ~~~~~~~n-gi~i~~~~~-~~~D~eL 159 (181)
T 2ght_A 136 SYVFHPDN-AVPVASWFD-NMSDTEL 159 (181)
T ss_dssp GGTTCTTS-BCCCCCCSS-CTTCCHH
T ss_pred HhccCcCC-EeEeccccC-CCChHHH
Confidence 99999986 888899987 5679888
No 4
>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}
Probab=99.26 E-value=2.3e-12 Score=97.71 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=68.6
Q ss_pred CchhhccceEEEEccCCccc----------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCCcc
Q 039355 1 MDFCLERFEVGIWSSAREWY----------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTDPY 64 (122)
Q Consensus 1 L~fc~~~F~V~VWSSa~~~n----------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDSP~ 64 (122)
|++|.++|+++||||+.+.+ ++.+++|+. .|..++|+|++++ .++++||+|||||.
T Consensus 77 L~~l~~~~~i~I~Tss~~~~a~~vl~~ld~~~~f~~~l~rd~~~~----~k~~~lK~L~~Lg----~~~~~~vivDDs~~ 148 (195)
T 2hhl_A 77 LQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVF----HRGNYVKDLSRLG----RELSKVIIVDNSPA 148 (195)
T ss_dssp HHHHHHHSEEEEECSSCHHHHHHHHHHHCCSSCEEEEECGGGCEE----ETTEEECCGGGSS----SCGGGEEEEESCGG
T ss_pred HHHHHcCCeEEEEcCCCHHHHHHHHHHhCCcccEEEEEEccccee----cCCceeeeHhHhC----CChhHEEEEECCHH
Confidence 46788899999999999988 667777775 3456899999995 67899999999999
Q ss_pred hhhcCCCCeeecCCCCCCCCCCCCcc
Q 039355 65 KALLNPPKTAIFPTEYKPSDVNDNAL 90 (122)
Q Consensus 65 Ka~~nP~n~aI~p~~y~~~~~~D~~L 90 (122)
....+|.| +|.+.+|.+ +.+|++|
T Consensus 149 ~~~~~~~n-gi~i~~~~~-~~~D~eL 172 (195)
T 2hhl_A 149 SYIFHPEN-AVPVQSWFD-DMTDTEL 172 (195)
T ss_dssp GGTTCGGG-EEECCCCSS-CTTCCHH
T ss_pred HhhhCccC-ccEEeeecC-CCChHHH
Confidence 99999976 898899987 5679998
No 5
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.83 E-value=2.1e-09 Score=89.53 Aligned_cols=71 Identities=17% Similarity=0.059 Sum_probs=57.4
Q ss_pred CchhhccceEEEEccCCccc------------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCC
Q 039355 1 MDFCLERFEVGIWSSAREWY------------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTD 62 (122)
Q Consensus 1 L~fc~~~F~V~VWSSa~~~n------------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDS 62 (122)
|++|.+.|+|+|||++.+.| +.+|++|+ ..+.|+|++++ +.+.+++|||||+
T Consensus 84 L~~l~~~yeivI~Tas~~~yA~~vl~~LDp~~~~f~~ri~sr~~~g-------~~~~KdL~~L~---~~dl~~viiiDd~ 153 (372)
T 3ef0_A 84 LQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSG-------SLAQKSLRRLF---PCDTSMVVVIDDR 153 (372)
T ss_dssp HHHHHTTEEEEEECSSCHHHHHHHHHHHCTTSCSSSSCEECTTTSS-------CSSCCCGGGTC---SSCCTTEEEEESC
T ss_pred HHHHhcCcEEEEEeCCcHHHHHHHHHHhccCCceeeeEEEEecCCC-------CcceecHHHhc---CCCCceEEEEeCC
Confidence 46788999999999999999 12233331 23589999887 4789999999999
Q ss_pred cchhhcCCCCeeecCCCCCCC
Q 039355 63 PYKALLNPPKTAIFPTEYKPS 83 (122)
Q Consensus 63 P~Ka~~nP~n~aI~p~~y~~~ 83 (122)
|.....|| | +|.+.+|.+.
T Consensus 154 ~~~~~~~p-N-~I~i~~~~~f 172 (372)
T 3ef0_A 154 GDVWDWNP-N-LIKVVPYEFF 172 (372)
T ss_dssp SGGGTTCT-T-EEECCCCCCS
T ss_pred HHHcCCCC-c-EeeeCCcccc
Confidence 99999997 5 9999999875
No 6
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.72 E-value=7.2e-09 Score=88.62 Aligned_cols=78 Identities=21% Similarity=0.129 Sum_probs=60.1
Q ss_pred CchhhccceEEEEccCCccc------------------ccccccccccCcCceeeEEEecccccccCCCCCcceEEEeCC
Q 039355 1 MDFCLERFEVGIWSSAREWY------------------MNNALNCIMVGLRGKLLFAWHSILSVPVGQYSSSNTLLIDTD 62 (122)
Q Consensus 1 L~fc~~~F~V~VWSSa~~~n------------------vw~~~~ct~~~~~~k~~~~K~L~~vW~~g~~~~sNTlLIDDS 62 (122)
|++|.+.|+|.|||++.+.| +..|++|+ ..+.|+|+++. +.+.+.+|||||+
T Consensus 92 L~~ls~~yEivIfTas~~~YA~~Vl~~LDp~~~~f~~Rl~sRd~cg-------~~~~KdL~~ll---~rdl~~vvIIDd~ 161 (442)
T 3ef1_A 92 LQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSG-------SLAQKSLRRLF---PCDTSMVVVIDDR 161 (442)
T ss_dssp HHHHTTTEEEEEECSSCHHHHHHHHHHHCTTSTTTTTCEECTTTSS-------CSSCCCGGGTC---SSCCTTEEEEESC
T ss_pred HHHHhCCcEEEEEcCCCHHHHHHHHHHhccCCccccceEEEecCCC-------CceeeehHHhc---CCCcceEEEEECC
Confidence 56788999999999999999 23344442 13579999875 4788999999999
Q ss_pred cchhhcCCCCeeecCCCCCCC----CCCCCcc
Q 039355 63 PYKALLNPPKTAIFPTEYKPS----DVNDNAL 90 (122)
Q Consensus 63 P~Ka~~nP~n~aI~p~~y~~~----~~~D~~L 90 (122)
|.....|| | +|.+.+|.+. +.||+.|
T Consensus 162 p~~~~~~p-N-~I~I~~~~fF~~~gD~n~~~l 191 (442)
T 3ef1_A 162 GDVWDWNP-N-LIKVVPYEFFVGIGDINSNFL 191 (442)
T ss_dssp SGGGTTCT-T-EEECCCCCCSTTCCCSCC---
T ss_pred HHHhCCCC-C-EEEcCCccccCCCCccccccc
Confidence 99999997 5 9999999743 5677766
No 7
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=29.70 E-value=19 Score=19.44 Aligned_cols=8 Identities=38% Similarity=0.908 Sum_probs=6.6
Q ss_pred CCCCCCCC
Q 039355 91 EHPFGQPA 98 (122)
Q Consensus 91 ~~pfgq~~ 98 (122)
.|+||+|.
T Consensus 19 ~~sf~nPf 26 (26)
T 1ckk_B 19 KRSFGNPF 26 (26)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 78999983
No 8
>3uhm_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; amidohydrolases, anti-bacterial agents, bacteria, catalytic drug design; HET: RFN; 1.26A {Pseudomonas aeruginosa} PDB: 2ves_A* 3u1y_A* 3p3e_A*
Probab=19.31 E-value=21 Score=28.98 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=24.0
Q ss_pred EEEecccccccC---CCCCcceEEEeCCcchhhcCCC
Q 039355 38 FAWHSILSVPVG---QYSSSNTLLIDTDPYKALLNPP 71 (122)
Q Consensus 38 ~~K~L~~vW~~g---~~~~sNTlLIDDSP~Ka~~nP~ 71 (122)
|+++++.++..| +=+.+|+|+|||.. .+||.
T Consensus 193 f~~eve~L~~~GLa~GGsLdNAiVi~~~~---vlN~~ 226 (299)
T 3uhm_A 193 FMRDIEYLRSQNLALGGSVENAIVVDENR---VLNED 226 (299)
T ss_dssp EGGGHHHHHHHTCCTTCSTTTSEEECSSS---BCCTT
T ss_pred cHHHHHHHHHCCcccccCccceEEEcCCc---ccCCC
Confidence 678888888853 67889999999864 46764
No 9
>3p3g_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3 UKW; 1.65A {Escherichia coli} PDB: 3ps1_A* 3ps2_A* 3ps3_A* 3nzk_A*
Probab=19.05 E-value=21 Score=29.02 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=24.0
Q ss_pred EEEecccccccC---CCCCcceEEEeCCcchhhcCCC
Q 039355 38 FAWHSILSVPVG---QYSSSNTLLIDTDPYKALLNPP 71 (122)
Q Consensus 38 ~~K~L~~vW~~g---~~~~sNTlLIDDSP~Ka~~nP~ 71 (122)
|+++++.++..| +=+.+|+|+|||.. .+||.
T Consensus 194 f~~eve~L~~~GLa~GGsLdNAiVi~~~~---vlN~~ 227 (300)
T 3p3g_A 194 FMRDIEYLQSRGLCLGGSFDCAIVVDDYR---VLNED 227 (300)
T ss_dssp EHHHHHHHHHTTCSTTCCTTTCEEECSSS---BCSTT
T ss_pred cHHHHHHHHHCCcccccCccceEEEcCCc---ccCCC
Confidence 677888888863 67899999999854 46764
No 10
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=17.88 E-value=39 Score=18.34 Aligned_cols=8 Identities=38% Similarity=0.820 Sum_probs=6.4
Q ss_pred CCCCCCCC
Q 039355 91 EHPFGQPA 98 (122)
Q Consensus 91 ~~pfgq~~ 98 (122)
.|+||+|.
T Consensus 19 ~~sf~nPf 26 (27)
T 1iq5_B 19 RKRFGNPF 26 (27)
T ss_dssp HTSSSCSC
T ss_pred cccccCCC
Confidence 68899884
Done!