AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>039357
VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI
TFYYNTWIPDDIWYGFNYCNAASDSKSAM
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT5G62200 AT5G62200 AT5G62200	protein from Arabidopsis thaliana	6.0e-32
BLAST match view associations BLAST with AT2G41475 AT2G41475 AT2G41475	protein from Arabidopsis thaliana	2.7e-29
BLAST match view associations BLAST with AT5G62210 AT5G62210 AT5G62210	protein from Arabidopsis thaliana	1.9e-19
BLAST match view associations BLAST with ATS3 ATS3 ATS3 AT5G07190	protein from Arabidopsis thaliana	3.9e-12
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039357
        (89 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2167908 - symbol:AT5G62200 "AT5G62200" species...   350  6.0e-32   1
TAIR|locus:4515102981 - symbol:AT2G41475 "AT2G41475" spec...   325  2.7e-29   1
TAIR|locus:2167928 - symbol:AT5G62210 "AT5G62210" species...   232  1.9e-19   1
TAIR|locus:2182865 - symbol:ATS3 "AT5G07190" species:3702...   163  3.9e-12   1


>TAIR|locus:2167908 [details] [associations]
            symbol:AT5G62200 "AT5G62200" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0031225 "anchored to
            membrane" evidence=TAS] [GO:0005774 "vacuolar membrane"
            evidence=IDA] [GO:0009611 "response to wounding" evidence=RCA]
            [GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA]
            InterPro:IPR001024 GO:GO:0005774 EMBL:CP002688 GO:GO:0031225
            Gene3D:2.60.60.20 InterPro:IPR008976 SUPFAM:SSF49723
            InterPro:IPR010417 Pfam:PF06232 EMBL:BT010895 EMBL:AK175131
            EMBL:AK176035 IPI:IPI00523516 RefSeq:NP_201026.1 UniGene:At.29064
            ProteinModelPortal:Q6NPM5 STRING:Q6NPM5 PRIDE:Q6NPM5
            EnsemblPlants:AT5G62200.1 GeneID:836341 KEGG:ath:AT5G62200
            OMA:NGPCTYQ ProtClustDB:CLSN2916759 Genevestigator:Q6NPM5
            Uniprot:Q6NPM5
        Length = 190

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 54/85 (63%), Positives = 73/85 (85%)

Query:     1 VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI 60
             +YAPRLDDP ++TFE CS+DT+ + GPCTYQICY+YLYRSG DGW P +V +Y + ++++
Sbjct:    80 IYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKAV 139

Query:    61 TFYYNTWIPDDIWYGFNYCNAASDS 85
             TF YNT++P+ +WYGFNYCN+ASDS
Sbjct:   140 TFPYNTYVPESVWYGFNYCNSASDS 164


>TAIR|locus:4515102981 [details] [associations]
            symbol:AT2G41475 "AT2G41475" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009506 "plasmodesma"
            evidence=IDA] InterPro:IPR001024 GO:GO:0009506 EMBL:CP002685
            Gene3D:2.60.60.20 InterPro:IPR008976 SUPFAM:SSF49723 EMBL:AK175164
            EMBL:AK175615 EMBL:AK175765 EMBL:AK221826 EMBL:AK221888
            EMBL:AK228257 IPI:IPI00521526 RefSeq:NP_001118501.1
            UniGene:At.43627 ProteinModelPortal:Q681K2 PRIDE:Q681K2
            EnsemblPlants:AT2G41475.1 GeneID:6240499 KEGG:ath:AT2G41475
            TAIR:At2g41475 OMA:CYLYLLR PhylomeDB:Q681K2 ProtClustDB:CLSN2925507
            Genevestigator:Q681K2 InterPro:IPR010417 Pfam:PF06232
            Uniprot:Q681K2
        Length = 179

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 53/88 (60%), Positives = 66/88 (75%)

Query:     1 VYAPRLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTRSI 60
             VY  RLDDP SRTFE CS+DTY + GPC   +CYLYL R G DGWKPE+V +YG   RS+
Sbjct:    80 VYVKRLDDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQGSDGWKPENVKIYGSSIRSV 139

Query:    61 TFYYNTWIPDDIWYGFNYCNAASDSKSA 88
             TFYYN ++P+ +WYGFN CN   ++KS+
Sbjct:   140 TFYYNLFLPNSVWYGFNVCNGIGNTKSS 167


>TAIR|locus:2167928 [details] [associations]
            symbol:AT5G62210 "AT5G62210" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0031225
            "anchored to membrane" evidence=TAS] [GO:0080167 "response to
            karrikin" evidence=IEP] [GO:0009611 "response to wounding"
            evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic process"
            evidence=RCA] [GO:0009718 "anthocyanin-containing compound
            biosynthetic process" evidence=RCA] [GO:0009744 "response to
            sucrose stimulus" evidence=RCA] [GO:0010224 "response to UV-B"
            evidence=RCA] InterPro:IPR001024 EMBL:CP002688 GO:GO:0031225
            GO:GO:0080167 EMBL:AB019235 Gene3D:2.60.60.20 InterPro:IPR008976
            SUPFAM:SSF49723 InterPro:IPR010417 Pfam:PF06232 EMBL:AY086825
            IPI:IPI00532880 RefSeq:NP_201027.1 UniGene:At.8930
            ProteinModelPortal:Q9LVB5 SMR:Q9LVB5 PRIDE:Q9LVB5 ProMEX:Q9LVB5
            EnsemblPlants:AT5G62210.1 GeneID:836342 KEGG:ath:AT5G62210
            TAIR:At5g62210 InParanoid:Q9LVB5 OMA:HEEESCP PhylomeDB:Q9LVB5
            ProtClustDB:CLSN2687047 Genevestigator:Q9LVB5 Uniprot:Q9LVB5
        Length = 223

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 42/82 (51%), Positives = 56/82 (68%)

Query:     1 VYAPRLDDPYSRT--FESCSTDTYTLYGPCTYQICYLYLYRSGYDGWKPESVTVYGYYTR 58
             V APRLD P S    FE CS+DT+ + G C   IC +Y+YRSG DGW PE+V +Y   ++
Sbjct:    72 VVAPRLDKPLSGGGGFEKCSSDTFQVKGKCLNTICSVYIYRSGTDGWIPETVEIYKEGSK 131

Query:    59 SITFYYNTWIPDDIWYGFNYCN 80
             S+ F +N  +P++IWYG NYCN
Sbjct:   132 SVKFDFNKNVPENIWYGNNYCN 153


>TAIR|locus:2182865 [details] [associations]
            symbol:ATS3 "AT5G07190" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=RCA;TAS] [GO:0031225 "anchored to membrane"
            evidence=TAS] [GO:0016020 "membrane" evidence=IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=RCA] [GO:0009845
            "seed germination" evidence=RCA] [GO:0010162 "seed dormancy
            process" evidence=RCA] EMBL:CP002688 GO:GO:0031225 EMBL:AL163652
            GO:GO:0009793 InterPro:IPR008976 SUPFAM:SSF49723 InterPro:IPR010417
            Pfam:PF06232 ProtClustDB:CLSN2687047 IPI:IPI00523243 PIR:T48490
            RefSeq:NP_196336.1 UniGene:At.5049 ProteinModelPortal:Q9LYP6
            STRING:Q9LYP6 PRIDE:Q9LYP6 ProMEX:Q9LYP6 EnsemblPlants:AT5G07190.1
            GeneID:830610 KEGG:ath:AT5G07190 TAIR:At5g07190 OMA:SIEIYSE
            PhylomeDB:Q9LYP6 Genevestigator:Q9LYP6 Uniprot:Q9LYP6
        Length = 213

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 34/91 (37%), Positives = 49/91 (53%)

Query:     1 VYAPRLDDPYSRT--FESCSTDTYTLYGPCTYQ-ICYLYLYRSGYDGWKPESVTVYGYYT 57
             VYAP+L            CST+T+ + G C    IC LY+ R+G DGW PES+ +Y   +
Sbjct:    66 VYAPKLGGLVRGPGGLGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEGS 125

Query:    58 RSITFYYNTWIPD-DIWYGFNYCNAASDSKS 87
             +S+ F ++  +P  + WYG N CN      S
Sbjct:   126 KSVKFDFSKSVPQLNTWYGHNNCNTTGRPSS 156


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.480    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       89        89   0.00091  102 3  12 22  0.48    29
                                                     29  0.50    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  482 (51 KB)
  Total size of DFA:  103 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.74u 0.11s 7.85t   Elapsed:  00:00:00
  Total cpu time:  7.74u 0.11s 7.85t   Elapsed:  00:00:00
  Start:  Fri May 10 22:21:47 2013   End:  Fri May 10 22:21:47 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
