Query 039361
Match_columns 253
No_of_seqs 122 out of 454
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:06:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 3E-15 1E-19 113.2 6.2 69 81-151 4-72 (82)
2 1nlw_A MAD protein, MAX dimeri 99.6 6.2E-15 2.1E-19 111.2 7.6 67 84-150 2-68 (80)
3 1nkp_B MAX protein, MYC proto- 99.6 4.4E-15 1.5E-19 112.0 6.8 67 83-150 2-68 (83)
4 1hlo_A Protein (transcription 99.6 3.1E-15 1.1E-19 112.3 5.6 71 79-150 8-78 (80)
5 1nkp_A C-MYC, MYC proto-oncoge 99.5 7.2E-15 2.5E-19 112.6 6.1 69 81-149 4-72 (88)
6 1a0a_A BHLH, protein (phosphat 99.5 4.2E-15 1.4E-19 107.4 0.8 56 83-138 2-61 (63)
7 1an4_A Protein (upstream stimu 99.5 1.7E-14 5.9E-19 104.1 2.4 58 81-138 3-63 (65)
8 3u5v_A Protein MAX, transcript 99.4 6.4E-14 2.2E-18 104.7 1.9 63 81-143 3-66 (76)
9 4ati_A MITF, microphthalmia-as 99.4 3.5E-13 1.2E-17 108.3 5.5 65 80-144 24-89 (118)
10 4h10_B Circadian locomoter out 99.3 7.3E-13 2.5E-17 97.8 4.9 62 79-142 4-65 (71)
11 2ql2_B Neurod1, neurogenic dif 99.3 3.6E-12 1.2E-16 91.1 4.8 58 82-139 1-58 (60)
12 4h10_A ARYL hydrocarbon recept 99.2 3.8E-12 1.3E-16 94.4 0.2 57 80-136 6-63 (73)
13 1mdy_A Protein (MYOD BHLH doma 99.1 1.6E-11 5.5E-16 89.9 3.4 59 80-139 9-67 (68)
14 2lfh_A DNA-binding protein inh 98.7 4.4E-09 1.5E-13 76.8 1.2 48 89-136 20-67 (68)
15 4f3l_A Mclock, circadian locom 98.6 2.7E-08 9.4E-13 91.6 4.8 59 77-137 6-64 (361)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.4 9.9E-08 3.4E-12 88.9 2.4 60 78-137 8-68 (387)
17 4aya_A DNA-binding protein inh 98.2 2.4E-06 8.1E-11 66.4 5.4 51 90-140 32-82 (97)
18 4ath_A MITF, microphthalmia-as 97.5 0.00017 5.9E-09 54.4 6.1 50 95-144 4-54 (83)
19 1zpv_A ACT domain protein; str 95.8 0.12 4E-06 37.4 10.5 64 181-251 6-69 (91)
20 1u8s_A Glycine cleavage system 93.0 0.47 1.6E-05 39.2 8.8 64 180-251 6-69 (192)
21 2nyi_A Unknown protein; protei 91.8 0.75 2.6E-05 38.4 8.6 66 180-250 5-71 (195)
22 2ko1_A CTR148A, GTP pyrophosph 90.8 0.64 2.2E-05 32.8 6.3 62 182-250 7-68 (88)
23 1u8s_A Glycine cleavage system 90.2 1.4 4.7E-05 36.3 8.7 65 180-251 93-165 (192)
24 2nyi_A Unknown protein; protei 87.6 2 7E-05 35.7 8.0 64 180-251 93-162 (195)
25 3p96_A Phosphoserine phosphata 78.0 5.8 0.0002 36.1 7.6 66 180-251 12-77 (415)
26 3n0v_A Formyltetrahydrofolate 75.4 15 0.0005 32.8 9.3 65 180-251 8-74 (286)
27 2jhe_A Transcription regulator 72.9 12 0.0004 29.1 7.2 35 182-218 2-36 (190)
28 3o1l_A Formyltetrahydrofolate 72.6 21 0.00071 32.1 9.6 66 180-251 22-89 (302)
29 3he4_B Synzip5; heterodimeric 72.5 5.3 0.00018 25.8 4.0 28 123-150 4-31 (46)
30 3obi_A Formyltetrahydrofolate 71.3 24 0.00081 31.5 9.6 66 180-251 6-73 (288)
31 3lou_A Formyltetrahydrofolate 69.3 23 0.00078 31.7 9.1 67 180-251 10-79 (292)
32 1y7p_A Hypothetical protein AF 65.8 13 0.00046 32.4 6.5 60 181-250 5-69 (223)
33 2f1f_A Acetolactate synthase i 55.7 19 0.00064 29.6 5.4 55 191-251 12-68 (164)
34 2fgc_A Acetolactate synthase, 51.0 55 0.0019 27.7 7.7 56 191-252 38-95 (193)
35 3nrb_A Formyltetrahydrofolate 50.5 61 0.0021 28.7 8.4 64 180-251 7-72 (287)
36 2f06_A Conserved hypothetical 49.9 83 0.0029 24.0 8.8 50 191-250 81-130 (144)
37 2pc6_A Probable acetolactate s 48.3 41 0.0014 27.6 6.4 55 191-251 13-69 (165)
38 2oqq_A Transcription factor HY 47.9 20 0.00069 23.3 3.4 22 129-150 3-24 (42)
39 2lqj_A Mg2+ transport protein; 45.0 68 0.0023 23.8 6.6 49 180-228 8-59 (94)
40 1gd2_E Transcription factor PA 41.7 24 0.00082 25.2 3.4 20 128-147 28-47 (70)
41 2wt7_A Proto-oncogene protein 41.5 57 0.002 22.3 5.4 44 91-150 1-44 (63)
42 1kd8_B GABH BLL, GCN4 acid bas 40.9 27 0.00092 22.0 3.1 19 131-149 3-21 (36)
43 1zme_C Proline utilization tra 40.3 26 0.0009 23.6 3.4 22 128-149 43-64 (70)
44 2re1_A Aspartokinase, alpha an 36.4 1.4E+02 0.0049 23.5 7.9 50 178-228 23-73 (167)
45 2l5g_A GPS2 protein, G protein 35.2 68 0.0023 20.3 4.3 27 122-148 8-34 (38)
46 2wq1_A General control protein 35.1 39 0.0013 20.9 3.1 18 131-148 2-19 (33)
47 2er8_A Regulatory protein Leu3 34.5 25 0.00085 24.0 2.5 21 128-148 48-68 (72)
48 2jee_A YIIU; FTSZ, septum, coi 33.4 54 0.0018 24.2 4.3 25 124-148 15-39 (81)
49 1xkm_B Distinctin chain B; por 30.1 53 0.0018 18.8 2.9 17 124-140 6-22 (26)
50 1dh3_A Transcription factor CR 29.9 52 0.0018 22.1 3.4 21 129-149 22-42 (55)
51 2dtj_A Aspartokinase; protein- 29.7 2.1E+02 0.0073 22.8 8.4 38 178-216 13-50 (178)
52 1kd8_A GABH AIV, GCN4 acid bas 29.6 36 0.0012 21.4 2.3 18 131-148 3-20 (36)
53 2dt9_A Aspartokinase; protein- 29.6 1.9E+02 0.0064 22.7 7.5 38 178-216 14-51 (167)
54 1jnm_A Proto-oncogene C-JUN; B 28.9 53 0.0018 22.3 3.4 24 127-150 20-43 (62)
55 2oxj_A Hybrid alpha/beta pepti 28.5 58 0.002 20.2 3.1 19 131-149 3-21 (34)
56 3c3g_A Alpha/beta peptide with 26.9 65 0.0022 19.9 3.1 19 131-149 2-20 (33)
57 1hwt_C Protein (heme activator 26.8 27 0.00092 24.3 1.6 21 127-147 56-76 (81)
58 2dgc_A Protein (GCN4); basic d 24.8 70 0.0024 22.1 3.4 24 127-150 28-51 (63)
59 1pyi_A Protein (pyrimidine pat 24.5 57 0.002 23.3 3.1 21 128-148 47-67 (96)
60 3fx7_A Putative uncharacterize 23.2 51 0.0017 25.0 2.6 38 95-143 47-84 (94)
61 3byp_A CZRB protein; membrane 22.6 2E+02 0.0069 20.0 6.9 53 195-250 11-68 (94)
62 3s1t_A Aspartokinase; ACT doma 21.6 3.2E+02 0.011 22.0 8.5 35 179-214 15-49 (181)
63 1g1e_B SIN3A; four-helix bundl 21.2 54 0.0018 24.2 2.4 17 123-139 9-25 (89)
64 1ytz_T Troponin T; muscle, THI 20.8 1.5E+02 0.0051 22.7 4.9 49 85-145 16-65 (107)
65 3c3f_A Alpha/beta peptide with 20.4 1E+02 0.0035 19.1 3.1 18 131-148 3-20 (34)
66 1d66_A Protein (GAL4); protein 20.3 26 0.00089 23.2 0.4 15 128-142 51-65 (66)
67 3m48_A General control protein 20.1 66 0.0022 19.9 2.2 17 132-148 3-19 (33)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.56 E-value=3e-15 Score=113.16 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=61.6
Q ss_pred ccccccchHHHHHHHHHHHhcHhhhhccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 039361 81 NKKMILRKDIERQRRQHLSMLHASLRSLLPLQSITGKRSISDHINEARNYINYLNKNIQELGLKRDKLKNL 151 (253)
Q Consensus 81 ~~kk~~H~~~ERqRR~kMn~lf~~LRSLLP~~~~k~K~Sis~il~eAI~YIKeLq~rVkeLe~kK~~l~~~ 151 (253)
..++..|+.+||+||.+||+.|..|++|||... .|+|.++||.+||+||++||.+++.|+.+.+.|...
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~--~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTE--AKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999852 477888889999999999999999999988777654
No 2
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=6.2e-15 Score=111.17 Aligned_cols=67 Identities=21% Similarity=0.332 Sum_probs=61.7
Q ss_pred cccchHHHHHHHHHHHhcHhhhhccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 039361 84 MILRKDIERQRRQHLSMLHASLRSLLPLQSITGKRSISDHINEARNYINYLNKNIQELGLKRDKLKN 150 (253)
Q Consensus 84 k~~H~~~ERqRR~kMn~lf~~LRSLLP~~~~k~K~Sis~il~eAI~YIKeLq~rVkeLe~kK~~l~~ 150 (253)
+..|+..||+||.+||..|..|+++||......|+|.++||..|++||++|+++.++|+.+++.+..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998877789999999999999999999999999988766643
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.56 E-value=4.4e-15 Score=112.02 Aligned_cols=67 Identities=28% Similarity=0.409 Sum_probs=60.5
Q ss_pred ccccchHHHHHHHHHHHhcHhhhhccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 039361 83 KMILRKDIERQRRQHLSMLHASLRSLLPLQSITGKRSISDHINEARNYINYLNKNIQELGLKRDKLKN 150 (253)
Q Consensus 83 kk~~H~~~ERqRR~kMn~lf~~LRSLLP~~~~k~K~Sis~il~eAI~YIKeLq~rVkeLe~kK~~l~~ 150 (253)
++..|+..||+||..||+.|..|+++||... ..|+|.++||..||+||++|++++++|+.+++.+..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999753 357899999999999999999999999988776654
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=3.1e-15 Score=112.30 Aligned_cols=71 Identities=27% Similarity=0.402 Sum_probs=63.9
Q ss_pred CcccccccchHHHHHHHHHHHhcHhhhhccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 039361 79 NNNKKMILRKDIERQRRQHLSMLHASLRSLLPLQSITGKRSISDHINEARNYINYLNKNIQELGLKRDKLKN 150 (253)
Q Consensus 79 ~~~~kk~~H~~~ERqRR~kMn~lf~~LRSLLP~~~~k~K~Sis~il~eAI~YIKeLq~rVkeLe~kK~~l~~ 150 (253)
....++..|+.+||+||..||..|..|++|||... ..|+|.++||..||+||++|++++++|+.+.+.|..
T Consensus 8 ~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 8 SDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578999999999999999999999999999764 358899999999999999999999999998877754
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=7.2e-15 Score=112.59 Aligned_cols=69 Identities=28% Similarity=0.259 Sum_probs=61.4
Q ss_pred ccccccchHHHHHHHHHHHhcHhhhhccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 039361 81 NKKMILRKDIERQRRQHLSMLHASLRSLLPLQSITGKRSISDHINEARNYINYLNKNIQELGLKRDKLK 149 (253)
Q Consensus 81 ~~kk~~H~~~ERqRR~kMn~lf~~LRSLLP~~~~k~K~Sis~il~eAI~YIKeLq~rVkeLe~kK~~l~ 149 (253)
..++..|++.||+||.+||+.|..|+++||......|+|.++||..||+||++|+++.+.|...++.+.
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999876567889999999999999999999999887665543
No 6
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.48 E-value=4.2e-15 Score=107.37 Aligned_cols=56 Identities=29% Similarity=0.322 Sum_probs=50.2
Q ss_pred ccccchHHHHHHHHHHHhcHhhhhccCCCCCcC----CCCchhhhHHHHHHHHHHHHHHH
Q 039361 83 KMILRKDIERQRRQHLSMLHASLRSLLPLQSIT----GKRSISDHINEARNYINYLNKNI 138 (253)
Q Consensus 83 kk~~H~~~ERqRR~kMn~lf~~LRSLLP~~~~k----~K~Sis~il~eAI~YIKeLq~rV 138 (253)
++.+|+.+||.||..||..|..|++|||..+.. .|.|.+++|+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999999976543 47788888999999999999865
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=1.7e-14 Score=104.09 Aligned_cols=58 Identities=22% Similarity=0.401 Sum_probs=51.2
Q ss_pred ccccccchHHHHHHHHHHHhcHhhhhccCCCCCcC---CCCchhhhHHHHHHHHHHHHHHH
Q 039361 81 NKKMILRKDIERQRRQHLSMLHASLRSLLPLQSIT---GKRSISDHINEARNYINYLNKNI 138 (253)
Q Consensus 81 ~~kk~~H~~~ERqRR~kMn~lf~~LRSLLP~~~~k---~K~Sis~il~eAI~YIKeLq~rV 138 (253)
..++..|+.+||+||..||+.|..|++|||..... .|+|.++||..||+||++||++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999999987642 46778888999999999999764
No 8
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.39 E-value=6.4e-14 Score=104.73 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=51.7
Q ss_pred ccccccchHHHHHHHHHHHhcHhhhhccCCCCCcCCCC-chhhhHHHHHHHHHHHHHHHHHHHH
Q 039361 81 NKKMILRKDIERQRRQHLSMLHASLRSLLPLQSITGKR-SISDHINEARNYINYLNKNIQELGL 143 (253)
Q Consensus 81 ~~kk~~H~~~ERqRR~kMn~lf~~LRSLLP~~~~k~K~-Sis~il~eAI~YIKeLq~rVkeLe~ 143 (253)
..++..|++.||+||..+|+.|..||.+||.....+|+ |..+||..||+||+.||+.+++++.
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999964456677 7889999999999999999998764
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.38 E-value=3.5e-13 Score=108.33 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=52.0
Q ss_pred cccccccchHHHHHHHHHHHhcHhhhhccCCCCCcC-CCCchhhhHHHHHHHHHHHHHHHHHHHHh
Q 039361 80 NNKKMILRKDIERQRRQHLSMLHASLRSLLPLQSIT-GKRSISDHINEARNYINYLNKNIQELGLK 144 (253)
Q Consensus 80 ~~~kk~~H~~~ERqRR~kMn~lf~~LRSLLP~~~~k-~K~Sis~il~eAI~YIKeLq~rVkeLe~k 144 (253)
...++..|+.+||+||.+||+.|..|++|||....+ .|++.++||..||+||++||+.++.|+..
T Consensus 24 ~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 24 ERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999999999999999999987654 47888999999999999999999999864
No 10
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.34 E-value=7.3e-13 Score=97.80 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=53.9
Q ss_pred CcccccccchHHHHHHHHHHHhcHhhhhccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 039361 79 NNNKKMILRKDIERQRRQHLSMLHASLRSLLPLQSITGKRSISDHINEARNYINYLNKNIQELG 142 (253)
Q Consensus 79 ~~~~kk~~H~~~ERqRR~kMn~lf~~LRSLLP~~~~k~K~Sis~il~eAI~YIKeLq~rVkeLe 142 (253)
....++..|+.+||+||.+||+.|..|++|||... .|++.++||..||+||++||+.+.=|+
T Consensus 4 k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~--~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 4 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNA--RKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCC--SCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCC--CCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 35678999999999999999999999999999532 467778889999999999999886554
No 11
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.26 E-value=3.6e-12 Score=91.11 Aligned_cols=58 Identities=28% Similarity=0.320 Sum_probs=53.4
Q ss_pred cccccchHHHHHHHHHHHhcHhhhhccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHH
Q 039361 82 KKMILRKDIERQRRQHLSMLHASLRSLLPLQSITGKRSISDHINEARNYINYLNKNIQ 139 (253)
Q Consensus 82 ~kk~~H~~~ERqRR~kMn~lf~~LRSLLP~~~~k~K~Sis~il~eAI~YIKeLq~rVk 139 (253)
+++..|++.||+|++.||..|..||.+||......|.|..++|-.||+||..|++.++
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999988777799999999999999999998764
No 12
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.15 E-value=3.8e-12 Score=94.41 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=48.3
Q ss_pred cccccccchHHHHHHHHHHHhcHhhhhccCCCCC-cCCCCchhhhHHHHHHHHHHHHH
Q 039361 80 NNKKMILRKDIERQRRQHLSMLHASLRSLLPLQS-ITGKRSISDHINEARNYINYLNK 136 (253)
Q Consensus 80 ~~~kk~~H~~~ERqRR~kMn~lf~~LRSLLP~~~-~k~K~Sis~il~eAI~YIKeLq~ 136 (253)
-..++..|..+||+||.+||+.|..|++|||... ...|.+.++||..||+||+.|+.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999999652 12366667779999999999974
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.15 E-value=1.6e-11 Score=89.87 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=52.7
Q ss_pred cccccccchHHHHHHHHHHHhcHhhhhccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHH
Q 039361 80 NNKKMILRKDIERQRRQHLSMLHASLRSLLPLQSITGKRSISDHINEARNYINYLNKNIQ 139 (253)
Q Consensus 80 ~~~kk~~H~~~ERqRR~kMn~lf~~LRSLLP~~~~k~K~Sis~il~eAI~YIKeLq~rVk 139 (253)
...++..|++.||+|+..||+.|..||.+||... ..|.|..++|-.||+||..|++.++
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4467889999999999999999999999999754 5689999999999999999998653
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.66 E-value=4.4e-09 Score=76.80 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcHhhhhccCCCCCcCCCCchhhhHHHHHHHHHHHHH
Q 039361 89 DIERQRRQHLSMLHASLRSLLPLQSITGKRSISDHINEARNYINYLNK 136 (253)
Q Consensus 89 ~~ERqRR~kMn~lf~~LRSLLP~~~~k~K~Sis~il~eAI~YIKeLq~ 136 (253)
+.||+|+..||.-|..||.+||......|.|..++|--||+||..||+
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 568999999999999999999998877799999999999999999984
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.60 E-value=2.7e-08 Score=91.56 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=39.8
Q ss_pred CCCcccccccchHHHHHHHHHHHhcHhhhhccCCCCCcCCCCchhhhHHHHHHHHHHHHHH
Q 039361 77 DNNNNKKMILRKDIERQRRQHLSMLHASLRSLLPLQSITGKRSISDHINEARNYINYLNKN 137 (253)
Q Consensus 77 ~~~~~~kk~~H~~~ERqRR~kMn~lf~~LRSLLP~~~~k~K~Sis~il~eAI~YIKeLq~r 137 (253)
+.....++..|+.+||+||.+||..|..|++|||.. ..|.+.++||..||.|||.|+..
T Consensus 6 ~~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~--~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 6 DDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN--ARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTCCSS--SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCC--CCCcCHHHHHHHHHHHHHHHHhh
Confidence 344568899999999999999999999999999932 24666677799999999999754
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.37 E-value=9.9e-08 Score=88.93 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=47.3
Q ss_pred CCcccccccchHHHHHHHHHHHhcHhhhhccCCCCC-cCCCCchhhhHHHHHHHHHHHHHH
Q 039361 78 NNNNKKMILRKDIERQRRQHLSMLHASLRSLLPLQS-ITGKRSISDHINEARNYINYLNKN 137 (253)
Q Consensus 78 ~~~~~kk~~H~~~ERqRR~kMn~lf~~LRSLLP~~~-~k~K~Sis~il~eAI~YIKeLq~r 137 (253)
.....++.+|+.+||.||.+||..|..|++|||... ...|.+.++||..||.|||.|+..
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 334578999999999999999999999999999421 123555566799999999999843
No 17
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.15 E-value=2.4e-06 Score=66.38 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcHhhhhccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHH
Q 039361 90 IERQRRQHLSMLHASLRSLLPLQSITGKRSISDHINEARNYINYLNKNIQE 140 (253)
Q Consensus 90 ~ERqRR~kMn~lf~~LRSLLP~~~~k~K~Sis~il~eAI~YIKeLq~rVke 140 (253)
.||.|=..||+-|..||.+||......|.|..++|--||+||..|++-+++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 358888899999999999999887777999999999999999999988754
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.52 E-value=0.00017 Score=54.38 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=42.3
Q ss_pred HHHHHhcHhhhhccCCCCC-cCCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Q 039361 95 RQHLSMLHASLRSLLPLQS-ITGKRSISDHINEARNYINYLNKNIQELGLK 144 (253)
Q Consensus 95 R~kMn~lf~~LRSLLP~~~-~k~K~Sis~il~eAI~YIKeLq~rVkeLe~k 144 (253)
|-.+|..+..|..|||... ...|++..+||.-|++||++||+..+.+.+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999743 4458899999999999999999887777543
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=95.83 E-value=0.12 Score=37.42 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=50.9
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeeeeCCeEEEEEEeeccccCCCccccHHHHHHHHHhh
Q 039361 181 VEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQTDEGFFHTIQAEESQVGDLTCVDLRVLQLKLDHS 251 (253)
Q Consensus 181 veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~~~~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~~ 251 (253)
+.|.+.|. .+++.|.+|..+|-+.|+.|.+++....++.++..+.+ .+.+ ..+...|.++|.++
T Consensus 6 ~~l~v~~~--DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v---~~~~--~~~l~~l~~~L~~~ 69 (91)
T 1zpv_A 6 AIITVVGK--DKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVV---SSDE--KQDFTYLRNEFEAF 69 (91)
T ss_dssp EEEEEEES--CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE---EESS--CCCHHHHHHHHHHH
T ss_pred EEEEEEEC--CCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEE---EeCC--CCCHHHHHHHHHHH
Confidence 45666674 56889999999999999999999998888877777777 5544 34788888888764
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.03 E-value=0.47 Score=39.22 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=50.0
Q ss_pred eeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeeeeCCeEEEEEEeeccccCCCccccHHHHHHHHHhh
Q 039361 180 GVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQTDEGFFHTIQAEESQVGDLTCVDLRVLQLKLDHS 251 (253)
Q Consensus 180 ~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~~~~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~~ 251 (253)
.+.|.+.|. .+++.+++|..+|.+.|+.|+.++.....+.++.++.+ .... .+...|++.|.++
T Consensus 6 ~~~itv~~~--DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v---~~~~---~~~~~l~~~L~~~ 69 (192)
T 1u8s_A 6 HLVITAVGT--DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLI---SGSP---SNITRVETTLPLL 69 (192)
T ss_dssp EEEEEEEEE--CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE---EECH---HHHHHHHHHHHHH
T ss_pred EEEEEEEcC--CCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEE---ecCC---CCHHHHHHHHHHH
Confidence 356777775 45789999999999999999999999888888888777 4321 3567777777654
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=91.81 E-value=0.75 Score=38.44 Aligned_cols=66 Identities=8% Similarity=-0.031 Sum_probs=48.5
Q ss_pred eeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeeeeCCeEEEEEEeeccccCCCc-cccHHHHHHHHHh
Q 039361 180 GVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQTDEGFFHTIQAEESQVGDLT-CVDLRVLQLKLDH 250 (253)
Q Consensus 180 ~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~~~~~~~~tI~a~~~kv~~~~-~id~~~l~~kL~~ 250 (253)
.+.|.|.|. .+++.++.|...|.++|+.|+.++..+..+.++..+.+ ...... ......|++.|..
T Consensus 5 ~~~ltv~~~--DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v---~~~~~~~~~~~~~l~~~L~~ 71 (195)
T 2nyi_A 5 SFVVSVAGS--DRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLV---SLNAKDGKLIQSALESALPG 71 (195)
T ss_dssp EEEEEEEEE--CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE---EESSSSSHHHHHHHHHHSTT
T ss_pred EEEEEEEeC--CCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEE---EecCccchhHHHHHHHHHHH
Confidence 357778885 45789999999999999999999999888887777777 433210 0115667776654
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=90.83 E-value=0.64 Score=32.82 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=42.1
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeeeeCCeEEEEEEeeccccCCCccccHHHHHHHHHh
Q 039361 182 EIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQTDEGFFHTIQAEESQVGDLTCVDLRVLQLKLDH 250 (253)
Q Consensus 182 eI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~~~~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~ 250 (253)
.|.+.+. .+++.|.+|..+|.+.|+.+.+++....++.....+.+ .+.+ .....++.++|.+
T Consensus 7 ~l~v~~~--Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v---~~~~--~~~l~~l~~~L~~ 68 (88)
T 2ko1_A 7 GIRIVGE--DKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMI---FVKN--TDKLTTLMDKLRK 68 (88)
T ss_dssp EEEEEEE--CCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEE---EESS--HHHHHHHHHHHTT
T ss_pred EEEEEEE--CCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEE---EECC--HHHHHHHHHHHhc
Confidence 4445453 45788999999999999999999988766644455555 4433 2244555555543
No 23
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=90.21 E-value=1.4 Score=36.32 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=47.1
Q ss_pred eeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeeeeC--------CeEEEEEEeeccccCCCccccHHHHHHHHHhh
Q 039361 180 GVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQTD--------EGFFHTIQAEESQVGDLTCVDLRVLQLKLDHS 251 (253)
Q Consensus 180 ~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~~~--------~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~~ 251 (253)
...|.+.|. .+++.+.+|...|.+.|++|..+...+.+ +.++-.+.. ... ...+...|++.|..+
T Consensus 93 ~~~l~v~~~--D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~---~~~--~~~~~~~l~~~l~~~ 165 (192)
T 1u8s_A 93 TVEVYVESD--DKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISA---RVD--SGCNLMQLQEEFDAL 165 (192)
T ss_dssp EEEEEEEES--CCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEE---EEC--TTSCHHHHHHHHHHH
T ss_pred eEEEEEEeC--CCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEE---eCC--CCCCHHHHHHHHHHH
Confidence 345666664 45788999999999999999999888664 244444555 332 356888999998764
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=87.56 E-value=2 Score=35.72 Aligned_cols=64 Identities=8% Similarity=0.075 Sum_probs=47.2
Q ss_pred eeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeeeeC------CeEEEEEEeeccccCCCccccHHHHHHHHHhh
Q 039361 180 GVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQTD------EGFFHTIQAEESQVGDLTCVDLRVLQLKLDHS 251 (253)
Q Consensus 180 ~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~~~------~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~~ 251 (253)
...|.|.|. .+++.+.+|-..|-++|+.|.++...+.+ ++++-.+.. .+. ...+ ..|++.|..+
T Consensus 93 ~~iltv~g~--DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~---~~~--~~~~-~~l~~~l~~~ 162 (195)
T 2nyi_A 93 EYELYVEGP--DSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRV---AFP--FPLY-QEVVTALSRV 162 (195)
T ss_dssp EEEEEEEEE--CCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEE---EEE--GGGH-HHHHHHHHHH
T ss_pred EEEEEEEeC--CCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEE---EcC--CCcc-HHHHHHHHHH
Confidence 356777775 45789999999999999999999988775 455555555 332 2446 8888888754
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=78.03 E-value=5.8 Score=36.13 Aligned_cols=66 Identities=11% Similarity=0.149 Sum_probs=51.6
Q ss_pred eeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeeeeCCeEEEEEEeeccccCCCccccHHHHHHHHHhh
Q 039361 180 GVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQTDEGFFHTIQAEESQVGDLTCVDLRVLQLKLDHS 251 (253)
Q Consensus 180 ~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~~~~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~~ 251 (253)
.+.|.+.|. .+++..+.|...|-++|..++.++-...++.++-.+.+ .+... .++.+.|++.|..+
T Consensus 12 ~~~lt~~g~--Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~---~~~~~-~~~~~~l~~~l~~~ 77 (415)
T 3p96_A 12 SVLITVTGV--DQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLV---CCPAD-VADGPALRHDVEAA 77 (415)
T ss_dssp EEEEEEEEE--CCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEE---EECHH-HHTSHHHHHHHHHH
T ss_pred eEEEEEEcC--CCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEE---EecCC-cCCHHHHHHHHHHH
Confidence 456778885 45788999999999999999999999999988877777 54332 34567888887653
No 26
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=75.36 E-value=15 Score=32.82 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=49.1
Q ss_pred eeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeee--eCCeEEEEEEeeccccCCCccccHHHHHHHHHhh
Q 039361 180 GVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQ--TDEGFFHTIQAEESQVGDLTCVDLRVLQLKLDHS 251 (253)
Q Consensus 180 ~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~--~~~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~~ 251 (253)
.+.+.+.|. .+++...+|-..|-+.|+.++.++... ..+.++-.+.+ ...+ ..+...|++.|..+
T Consensus 8 ~~vLtv~c~--DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~---~~~~--~~~~~~L~~~f~~l 74 (286)
T 3n0v_A 8 TWILTADCP--SMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEF---RQPD--DFDEAGFRAGLAER 74 (286)
T ss_dssp CEEEEEEEE--CCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE---ECCS--SCCHHHHHHHHHHH
T ss_pred cEEEEEEeC--CCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEE---ecCC--CCCHHHHHHHHHHH
Confidence 456777785 457889999999999999999998874 45666665656 4433 47889999988654
No 27
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=72.94 E-value=12 Score=29.11 Aligned_cols=35 Identities=6% Similarity=0.087 Sum_probs=29.4
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeeee
Q 039361 182 EIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQT 218 (253)
Q Consensus 182 eI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~~ 218 (253)
.|.|.|. .+.++|.+|+.+|.+.++++..++....
T Consensus 2 ~~~v~~~--dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCE--DRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEEC--SCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEe--cCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 4666673 4578999999999999999999999766
No 28
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=72.56 E-value=21 Score=32.15 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=48.7
Q ss_pred eeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeeee--CCeEEEEEEeeccccCCCccccHHHHHHHHHhh
Q 039361 180 GVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQT--DEGFFHTIQAEESQVGDLTCVDLRVLQLKLDHS 251 (253)
Q Consensus 180 ~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~~--~~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~~ 251 (253)
.+.+.+.|. .+++....|-..|-+.|+.++.++.... .+.++-.+.+ ...+. ..+.++|++.|..+
T Consensus 22 ~~iLtv~c~--DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~---~~~~~-~~~~~~L~~~l~~l 89 (302)
T 3o1l_A 22 TFRLVIACP--DRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEI---RADTL-PFDLDGFREAFTPI 89 (302)
T ss_dssp EEEEEEEEE--CCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEE---EGGGS-SSCHHHHHHHHHHH
T ss_pred eEEEEEECC--CCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEE---ecCCC-CCCHHHHHHHHHHH
Confidence 355777785 4578899999999999999999988865 5666655555 33222 46888999888653
No 29
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=72.47 E-value=5.3 Score=25.84 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 039361 123 HINEARNYINYLNKNIQELGLKRDKLKN 150 (253)
Q Consensus 123 il~eAI~YIKeLq~rVkeLe~kK~~l~~ 150 (253)
.+.+--+||.+|+++-.+|+.-|+.++-
T Consensus 4 tvkelknyiqeleernaelknlkehlkf 31 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHLKF 31 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 4678889999999999999887766543
No 30
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=71.28 E-value=24 Score=31.45 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=49.2
Q ss_pred eeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeee--eCCeEEEEEEeeccccCCCccccHHHHHHHHHhh
Q 039361 180 GVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQ--TDEGFFHTIQAEESQVGDLTCVDLRVLQLKLDHS 251 (253)
Q Consensus 180 ~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~--~~~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~~ 251 (253)
.+.+.+.|. .+++...+|-..|-++|+.++.++... ..+.++-.+.+ .+.+. .++.++|++.|..+
T Consensus 6 ~~iLtv~g~--DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~---~~~~~-~~~~~~L~~~f~~l 73 (288)
T 3obi_A 6 QYVLTLSCP--DRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVF---NAAAK-VIPLASLRTGFGVI 73 (288)
T ss_dssp EEEEEEEEE--CCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE---EESSC-CCCHHHHHHHHHHH
T ss_pred eEEEEEECC--CCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEE---EcCCC-CCCHHHHHHHHHHH
Confidence 356777785 457889999999999999999998753 45666666666 44432 46888999888653
No 31
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=69.35 E-value=23 Score=31.68 Aligned_cols=67 Identities=9% Similarity=0.058 Sum_probs=48.0
Q ss_pred eeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeee--eCCeEEEEEEeeccccCCCc-cccHHHHHHHHHhh
Q 039361 180 GVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQ--TDEGFFHTIQAEESQVGDLT-CVDLRVLQLKLDHS 251 (253)
Q Consensus 180 ~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~--~~~~~~~tI~a~~~kv~~~~-~id~~~l~~kL~~~ 251 (253)
.+.+.+.|. .+++...+|-..|-+.|+.++.++... ..+.++-.+.+ ....+. ..+...|++.|..+
T Consensus 10 ~~vLtv~c~--Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~---~~~~~~~~~~~~~L~~~f~~l 79 (292)
T 3lou_A 10 QFVLTLSCP--SAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVF---HATDDADALRVDALRREFEPI 79 (292)
T ss_dssp EEEEEEEEE--SCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE---EECC----CCHHHHHHHHHHH
T ss_pred cEEEEEEcC--CCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEE---EccCcccCCCHHHHHHHHHHH
Confidence 456777885 457889999999999999999998874 45666655555 333112 46888999888653
No 32
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=65.83 E-value=13 Score=32.37 Aligned_cols=60 Identities=10% Similarity=0.039 Sum_probs=39.5
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeeeeC-----CeEEEEEEeeccccCCCccccHHHHHHHHHh
Q 039361 181 VEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQTD-----EGFFHTIQAEESQVGDLTCVDLRVLQLKLDH 250 (253)
Q Consensus 181 veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~~~-----~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~ 250 (253)
+.+.+.+. .+++.|++|+.+|-+++..+.+.+.+... +...-+ . ++.+. ++.+|-++|.+
T Consensus 5 VtL~I~a~--DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--I---EV~d~---~Le~LL~kLrk 69 (223)
T 1y7p_A 5 RGLRIIAE--NKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--F---EIEGG---DFEKILERVKT 69 (223)
T ss_dssp EEEEEEEE--CCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--E---EECSS---CHHHHHHHHHT
T ss_pred EEEEEEEc--CCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--E---EECCC---CHHHHHHHHhC
Confidence 45555553 45789999999999999999999998753 333333 6 55554 78888888765
No 33
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=55.71 E-value=19 Score=29.62 Aligned_cols=55 Identities=25% Similarity=0.233 Sum_probs=40.0
Q ss_pred CCcchHHHHHHHHHHCCceEEEEEeeeeC--CeEEEEEEeeccccCCCccccHHHHHHHHHhh
Q 039361 191 EENLKLSKVMEAVLEEGLDVIRCASTQTD--EGFFHTIQAEESQVGDLTCVDLRVLQLKLDHS 251 (253)
Q Consensus 191 ~~~~~Ls~Vm~~Lee~gLdVvsassS~~~--~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~~ 251 (253)
++++.|.+|...+.+.|+.+.+.++.... +....+|.+ . .+ .-.+..|...|.++
T Consensus 12 NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V---~-~d--~~~leqI~kqL~Kl 68 (164)
T 2f1f_A 12 NESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQT---V-GD--EKVLEQIEKQLHKL 68 (164)
T ss_dssp CCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEE---E-SC--HHHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEE---e-cc--HHHHHHHHHHHcCC
Confidence 45789999999999999999998887543 566677777 4 22 23455666666654
No 34
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=51.03 E-value=55 Score=27.73 Aligned_cols=56 Identities=7% Similarity=0.011 Sum_probs=40.6
Q ss_pred CCcchHHHHHHHHHHCCceEEEEEeeee--CCeEEEEEEeeccccCCCccccHHHHHHHHHhhh
Q 039361 191 EENLKLSKVMEAVLEEGLDVIRCASTQT--DEGFFHTIQAEESQVGDLTCVDLRVLQLKLDHSI 252 (253)
Q Consensus 191 ~~~~~Ls~Vm~~Lee~gLdVvsassS~~--~~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~~I 252 (253)
++++.|.+|...+.+.|+.+.+.++... .+..-.||.+ .-. .-.+..|...|.+++
T Consensus 38 N~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV---~g~---e~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 38 NKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMV---KGD---DKTIEQIEKQAYKLV 95 (193)
T ss_dssp CCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEE---EEC---TTHHHHHHHHHTTST
T ss_pred CCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEE---ECC---HHHHHHHHHHhcCcC
Confidence 4678999999999999999999888643 3566677777 322 224667777776643
No 35
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=50.49 E-value=61 Score=28.71 Aligned_cols=64 Identities=8% Similarity=0.185 Sum_probs=43.9
Q ss_pred eeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeee--eCCeEEEEEEeeccccCCCccccHHHHHHHHHhh
Q 039361 180 GVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQ--TDEGFFHTIQAEESQVGDLTCVDLRVLQLKLDHS 251 (253)
Q Consensus 180 ~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~--~~~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~~ 251 (253)
.+.+.+.|. .+++...+|-..|-++|+.++.++... ..+.++-.+.. .... .+..+|++.|..+
T Consensus 7 ~~vLtv~c~--Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~---~~~~---~~~~~L~~~f~~l 72 (287)
T 3nrb_A 7 QYVLSLACQ--DAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSV---EIPV---AGVNDFNSAFGKV 72 (287)
T ss_dssp EEEEEEEEE--CCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE---ECCC------CHHHHHHHHH
T ss_pred eEEEEEECC--CCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEE---EcCC---CCHHHHHHHHHHH
Confidence 456777785 457889999999999999999998763 45666655555 3322 3455888887643
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=49.87 E-value=83 Score=23.96 Aligned_cols=50 Identities=16% Similarity=0.043 Sum_probs=34.3
Q ss_pred CCcchHHHHHHHHHHCCceEEEEEeeeeCCeEEEEEEeeccccCCCccccHHHHHHHHHh
Q 039361 191 EENLKLSKVMEAVLEEGLDVIRCASTQTDEGFFHTIQAEESQVGDLTCVDLRVLQLKLDH 250 (253)
Q Consensus 191 ~~~~~Ls~Vm~~Lee~gLdVvsassS~~~~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~ 250 (253)
.+++.+.+++.+|.+.|+.+....++.-++.....|.. + |.....+.|.+
T Consensus 81 d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~---~-------d~~~A~~~L~~ 130 (144)
T 2f06_A 81 NVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP---S-------NMDKCIEVLKE 130 (144)
T ss_dssp SSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE---S-------CHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe---C-------CHHHHHHHHHH
Confidence 45788999999999999999765444245566555655 2 55555555543
No 37
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=48.35 E-value=41 Score=27.59 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=39.5
Q ss_pred CCcchHHHHHHHHHHCCceEEEEEeeee--CCeEEEEEEeeccccCCCccccHHHHHHHHHhh
Q 039361 191 EENLKLSKVMEAVLEEGLDVIRCASTQT--DEGFFHTIQAEESQVGDLTCVDLRVLQLKLDHS 251 (253)
Q Consensus 191 ~~~~~Ls~Vm~~Lee~gLdVvsassS~~--~~~~~~tI~a~~~kv~~~~~id~~~l~~kL~~~ 251 (253)
++++.|.+|...+.+.|+.+.+.++... .+..-.+|.+ . .+ .-.+..|...|.++
T Consensus 13 NrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV---~-~d--~~~leql~kQL~Kl 69 (165)
T 2pc6_A 13 NEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVT---N-GP--DEIVEQITKQLNKL 69 (165)
T ss_dssp CSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEE---E-EC--HHHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEE---e-cc--HHHHHHHHHHhcCC
Confidence 4578999999999999999999888754 3666677777 4 11 23455666666654
No 38
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=47.92 E-value=20 Score=23.33 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHHHhhh
Q 039361 129 NYINYLNKNIQELGLKRDKLKN 150 (253)
Q Consensus 129 ~YIKeLq~rVkeLe~kK~~l~~ 150 (253)
.|+-+|+.++++|+.+-.+|..
T Consensus 3 aYl~eLE~r~k~le~~naeLEe 24 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEE 24 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888877655543
No 39
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=44.98 E-value=68 Score=23.75 Aligned_cols=49 Identities=6% Similarity=0.069 Sum_probs=36.6
Q ss_pred eeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeeee-CC-e-EEEEEEe
Q 039361 180 GVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQT-DE-G-FFHTIQA 228 (253)
Q Consensus 180 ~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~~-~~-~-~~~tI~a 228 (253)
...|.++|....++.....+++.|+..++-+-+..+..+ ++ . +-.++.+
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~a 59 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLM 59 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEe
Confidence 467888897555566778889999999999999996663 33 3 5566777
No 40
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=41.71 E-value=24 Score=25.23 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 039361 128 RNYINYLNKNIQELGLKRDK 147 (253)
Q Consensus 128 I~YIKeLq~rVkeLe~kK~~ 147 (253)
-.||++|+.+|.+|+..-..
T Consensus 28 ~~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999875443
No 41
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.51 E-value=57 Score=22.31 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcHhhhhccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 039361 91 ERQRRQHLSMLHASLRSLLPLQSITGKRSISDHINEARNYINYLNKNIQELGLKRDKLKN 150 (253)
Q Consensus 91 ERqRR~kMn~lf~~LRSLLP~~~~k~K~Sis~il~eAI~YIKeLq~rVkeLe~kK~~l~~ 150 (253)
||.+|....++.++-++ . .--..|+.+|+.+++.|+.....|..
T Consensus 1 Ekr~rrrerNR~AA~rc------------R----~rKk~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC------------R----NRRRELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp CHHHHHHHHHHHHHHHH------------H----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH------------H----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666554 1 23457888888888888876655543
No 42
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=40.93 E-value=27 Score=21.98 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhHHHhh
Q 039361 131 INYLNKNIQELGLKRDKLK 149 (253)
Q Consensus 131 IKeLq~rVkeLe~kK~~l~ 149 (253)
+++|+.+|++|-.++..|.
T Consensus 3 MnQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 5788888888877765543
No 43
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=40.34 E-value=26 Score=23.60 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHhh
Q 039361 128 RNYINYLNKNIQELGLKRDKLK 149 (253)
Q Consensus 128 I~YIKeLq~rVkeLe~kK~~l~ 149 (253)
-.||..|+++|+.|+..-..|.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999998765554
No 44
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=36.42 E-value=1.4e+02 Score=23.47 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=31.0
Q ss_pred CCeeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEeee-eCCeEEEEEEe
Q 039361 178 SGGVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCASTQ-TDEGFFHTIQA 228 (253)
Q Consensus 178 ~~~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS~-~~~~~~~tI~a 228 (253)
.+-..|.+..- ..+++.+.+|+.+|.+.|+.|...+.+. .++....+|.+
T Consensus 23 ~~~~~i~v~~~-~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v 73 (167)
T 2re1_A 23 KNQARINVRGV-PDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTV 73 (167)
T ss_dssp CCCEEEEEEEE-ECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEE
T ss_pred CCEEEEEEecC-CCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEE
Confidence 34455666531 2346679999999999999988776542 23444444444
No 45
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.23 E-value=68 Score=20.34 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHh
Q 039361 122 DHINEARNYINYLNKNIQELGLKRDKL 148 (253)
Q Consensus 122 ~il~eAI~YIKeLq~rVkeLe~kK~~l 148 (253)
..|+++-+-|-.|+.+++.|+..|-.|
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999887543
No 46
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=35.13 E-value=39 Score=20.86 Aligned_cols=18 Identities=22% Similarity=0.122 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhHHHh
Q 039361 131 INYLNKNIQELGLKRDKL 148 (253)
Q Consensus 131 IKeLq~rVkeLe~kK~~l 148 (253)
+++|+.+|++|-.++..+
T Consensus 2 MnQLEdKVEell~~~~~l 19 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHN 19 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHH
Confidence 467888888887776544
No 47
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=34.53 E-value=25 Score=23.99 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHh
Q 039361 128 RNYINYLNKNIQELGLKRDKL 148 (253)
Q Consensus 128 I~YIKeLq~rVkeLe~kK~~l 148 (253)
-.||.+|+++|+.|+..-..+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999865443
No 48
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.36 E-value=54 Score=24.17 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHh
Q 039361 124 INEARNYINYLNKNIQELGLKRDKL 148 (253)
Q Consensus 124 l~eAI~YIKeLq~rVkeLe~kK~~l 148 (253)
|..||+-|.-||..|++|+.+...+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999876554
No 49
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=30.07 E-value=53 Score=18.77 Aligned_cols=17 Identities=29% Similarity=0.690 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039361 124 INEARNYINYLNKNIQE 140 (253)
Q Consensus 124 l~eAI~YIKeLq~rVke 140 (253)
+-||-+|+.+|..+++.
T Consensus 6 liearkyleqlhrklkn 22 (26)
T 1xkm_B 6 LIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 56888999999888753
No 50
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=29.89 E-value=52 Score=22.14 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhh
Q 039361 129 NYINYLNKNIQELGLKRDKLK 149 (253)
Q Consensus 129 ~YIKeLq~rVkeLe~kK~~l~ 149 (253)
.|+.+|+.+|..|+..-..|.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999998655543
No 51
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=29.72 E-value=2.1e+02 Score=22.78 Aligned_cols=38 Identities=8% Similarity=0.202 Sum_probs=25.1
Q ss_pred CCeeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEee
Q 039361 178 SGGVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCAST 216 (253)
Q Consensus 178 ~~~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS 216 (253)
.+-..|.|.... .+++.+.+|+..|.+.|+.|.....+
T Consensus 13 ~~~~~Itv~~~~-~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 13 KSEAKVTVLGIS-DKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp CSEEEEEEEEEE-CSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred CCEEEEEEecCC-CCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 345556664322 34677999999999999666555444
No 52
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.63 E-value=36 Score=21.40 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhHHHh
Q 039361 131 INYLNKNIQELGLKRDKL 148 (253)
Q Consensus 131 IKeLq~rVkeLe~kK~~l 148 (253)
+++|+.+|++|-.++..|
T Consensus 3 MnQLE~kVEeLl~~~~~L 20 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHL 20 (36)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHH
Confidence 467888888887766544
No 53
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=29.61 E-value=1.9e+02 Score=22.73 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=26.6
Q ss_pred CCeeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEEee
Q 039361 178 SGGVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCAST 216 (253)
Q Consensus 178 ~~~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsassS 216 (253)
.+-..|.+... ..+++.+.+++.+|.+.|+.|...+.+
T Consensus 14 ~~~a~Itv~g~-~~~~G~~a~if~~La~~~InVd~I~q~ 51 (167)
T 2dt9_A 14 LDHAQIGLIGI-PDQPGIAAKVFQALAERGIAVDMIIQG 51 (167)
T ss_dssp CSEEEEEEEEE-ECSTTHHHHHHHHHHHHTCCCSCEEBC
T ss_pred CCEEEEEEecC-CCCCCHHHHHHHHHHHcCCcEEEEEcC
Confidence 34455555542 334677899999999999888776544
No 54
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.88 E-value=53 Score=22.33 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhh
Q 039361 127 ARNYINYLNKNIQELGLKRDKLKN 150 (253)
Q Consensus 127 AI~YIKeLq~rVkeLe~kK~~l~~ 150 (253)
--.|+.+|+.+|+.|+.+...|..
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999987766544
No 55
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=28.52 E-value=58 Score=20.21 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhHHHhh
Q 039361 131 INYLNKNIQELGLKRDKLK 149 (253)
Q Consensus 131 IKeLq~rVkeLe~kK~~l~ 149 (253)
+.+|+.+|++|=.++.+|.
T Consensus 3 MnQLE~kVEeLl~~n~~Le 21 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHH
Confidence 4688888888877776554
No 56
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=26.89 E-value=65 Score=19.85 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhHHHhh
Q 039361 131 INYLNKNIQELGLKRDKLK 149 (253)
Q Consensus 131 IKeLq~rVkeLe~kK~~l~ 149 (253)
+++|+.+|++|=.++..|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le 20 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXE 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHH
Confidence 4688888888877765543
No 57
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=26.76 E-value=27 Score=24.29 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 039361 127 ARNYINYLNKNIQELGLKRDK 147 (253)
Q Consensus 127 AI~YIKeLq~rVkeLe~kK~~ 147 (253)
.-.||..|+++|+.||..-..
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~ 76 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 347999999999999985433
No 58
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.77 E-value=70 Score=22.08 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhh
Q 039361 127 ARNYINYLNKNIQELGLKRDKLKN 150 (253)
Q Consensus 127 AI~YIKeLq~rVkeLe~kK~~l~~ 150 (253)
--.|+.+|+.+|+.|+.+...|..
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999887665543
No 59
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=24.53 E-value=57 Score=23.30 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHh
Q 039361 128 RNYINYLNKNIQELGLKRDKL 148 (253)
Q Consensus 128 I~YIKeLq~rVkeLe~kK~~l 148 (253)
-.|+..|+++|+.|+.....+
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 359999999999999866554
No 60
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.24 E-value=51 Score=24.96 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=26.9
Q ss_pred HHHHHhcHhhhhccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 039361 95 RQHLSMLHASLRSLLPLQSITGKRSISDHINEARNYINYLNKNIQELGL 143 (253)
Q Consensus 95 R~kMn~lf~~LRSLLP~~~~k~K~Sis~il~eAI~YIKeLq~rVkeLe~ 143 (253)
|.+..+.|..|.+.+ -.-.+.|=+||..|.++|+-|+.
T Consensus 47 r~kFee~fe~l~s~l-----------~~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 47 RDKFSEVLDNLKSTF-----------NEFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHhhHHHhHHHHHHHHHhHH
Confidence 445555555555544 12257888999999999999987
No 61
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=22.56 E-value=2e+02 Score=20.04 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHC----CceEEEEEeeeeCCeEEEEEEeeccccCCCcc-ccHHHHHHHHHh
Q 039361 195 KLSKVMEAVLEE----GLDVIRCASTQTDEGFFHTIQAEESQVGDLTC-VDLRVLQLKLDH 250 (253)
Q Consensus 195 ~Ls~Vm~~Lee~----gLdVvsassS~~~~~~~~tI~a~~~kv~~~~~-id~~~l~~kL~~ 250 (253)
.+.+|.+.|... -.+|.+..+...|...+.++|+ .+.+... .++.++.+++.+
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi---~v~~~~~~~~~h~i~~~ie~ 68 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHL---VVRGDTPVEEAHRLCDELER 68 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEE---EECTTCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEE---EECCCCcHHHHHHHHHHHHH
Confidence 355666666644 5789999888889888899999 7755422 333444444433
No 62
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=21.59 E-value=3.2e+02 Score=21.98 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=25.3
Q ss_pred CeeEEEEEeecCCCcchHHHHHHHHHHCCceEEEEE
Q 039361 179 GGVEIVINSVHKEENLKLSKVMEAVLEEGLDVIRCA 214 (253)
Q Consensus 179 ~~veI~i~~~~~~~~~~Ls~Vm~~Lee~gLdVvsas 214 (253)
+...|.|..- ...++.+.+|+..|.+.|+.|...+
T Consensus 15 ~~~~Iti~~~-~~~~G~~a~If~~La~~~I~vd~I~ 49 (181)
T 3s1t_A 15 SEAKVTIVGL-PDIPGYAAKVFRAVADADVNIDMVL 49 (181)
T ss_dssp SEEEEEEEEE-ESSTTHHHHHHHHHHHTTCCCCCEE
T ss_pred CEEEEEEecC-CCCcCHHHHHHHHHHHcCCcEEEEE
Confidence 4455555532 3456679999999999999887665
No 63
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=21.22 E-value=54 Score=24.17 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 039361 123 HINEARNYINYLNKNIQ 139 (253)
Q Consensus 123 il~eAI~YIKeLq~rVk 139 (253)
.+++|++||+.++.+-+
T Consensus 9 ~~~~A~~YvnkVK~rF~ 25 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQ 25 (89)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 47999999999999854
No 64
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=20.79 E-value=1.5e+02 Score=22.72 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=32.7
Q ss_pred ccchHHHH-HHHHHHHhcHhhhhccCCCCCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHhH
Q 039361 85 ILRKDIER-QRRQHLSMLHASLRSLLPLQSITGKRSISDHINEARNYINYLNKNIQELGLKR 145 (253)
Q Consensus 85 ~~H~~~ER-qRR~kMn~lf~~LRSLLP~~~~k~K~Sis~il~eAI~YIKeLq~rVkeLe~kK 145 (253)
..-...|| .||+-|.+++-.| =|+ -+|. ++--+.+++|.++|..|++.|
T Consensus 16 ~~k~q~e~EeKkkiLaER~~pL--~id------~l~~----~~L~e~~keLh~~I~~lEeEK 65 (107)
T 1ytz_T 16 RGKKQTARETKKKVLAERRKPL--NID------HLNE----DKLRDKAKELWDWLYQLQTEK 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCC--CCS------SSCS----SHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCC--CCC------CCCH----HHHHHHHHHHHHHHHHHHHHH
Confidence 35566777 4888888877443 122 2333 445678899999999998776
No 65
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.44 E-value=1e+02 Score=19.06 Aligned_cols=18 Identities=0% Similarity=0.004 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhHHHh
Q 039361 131 INYLNKNIQELGLKRDKL 148 (253)
Q Consensus 131 IKeLq~rVkeLe~kK~~l 148 (253)
+++|+.+|++|=.++..|
T Consensus 3 MnQLEdKVEeLl~~~~~L 20 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHX 20 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHH
Confidence 467888888877666544
No 66
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=20.34 E-value=26 Score=23.23 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q 039361 128 RNYINYLNKNIQELG 142 (253)
Q Consensus 128 I~YIKeLq~rVkeLe 142 (253)
..||..|+++|+.||
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 469999999998886
No 67
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.07 E-value=66 Score=19.86 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHh
Q 039361 132 NYLNKNIQELGLKRDKL 148 (253)
Q Consensus 132 KeLq~rVkeLe~kK~~l 148 (253)
.+|+.+|++|-.++.+|
T Consensus 3 ~QLE~kVEeLl~~n~~L 19 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNL 19 (33)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHH
Confidence 56788888887666544
Done!